RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8308
(311 letters)
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 196 bits (502), Expect = 8e-60
Identities = 85/271 (31%), Positives = 133/271 (49%), Gaps = 69/271 (25%)
Query: 37 PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
PD A++F +Q +L TY ELN +N+LA H+L + V +VA+
Sbjct: 1 PDAVAVVFGDQ---SL-----TYRELNERANRLA----HYLRARGVGPG-----DLVAIC 43
Query: 97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
L S ++ +LAV KAGAAY+PLD P +R+ ++L ++ L++ + + +LAY
Sbjct: 44 LERSPEMVVAILAVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD----DLAY-- 97
Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
V+YTSGSTG PKGV + H
Sbjct: 98 -----------------------------------------VIYTSGSTGRPKGVMVEHR 116
Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII-PRDVTRN 275
++N LAW + + +RV + +F +V EI+ PLLS G L++ P +V R+
Sbjct: 117 GLVNLLAWLQERYGLTAGDRV-LQFASFSFDASVWEIFPPLLS---GATLVLAPPEVLRD 172
Query: 276 PDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306
P+ L L ++++ L LVPSLLR++L L+
Sbjct: 173 PEALAELLREHRITVLHLVPSLLRALLDALE 203
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 164 bits (417), Expect = 1e-47
Identities = 83/249 (33%), Positives = 128/249 (51%), Gaps = 17/249 (6%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY EL+ +N+LA L V GD VA+ L S + +LAV KAGAAY
Sbjct: 1 TYRELDERANRLAAALRA----LGV----GPGDR-VAILLPNSPEWVVAILAVLKAGAAY 51
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+PLD + P +R+ +IL ++ ++I ++E + L + ++ L + + + +
Sbjct: 52 VPLDPSLPAERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111
Query: 178 PGESMLHSDNNNE----QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSP 233
E + + +D+A ++YTSG+TG PKGV L H +L A F +P
Sbjct: 112 DDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTP 171
Query: 234 SERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVL 293
+RV L F +V EI+GPLL GG L++ T +P +L+ +EKYKV L
Sbjct: 172 GDRVLLL-LPLHFDGSVWEIFGPLL---AGGTLVLVPKFTLDPARLLDLIEKYKVTVLYG 227
Query: 294 VPSLLRSML 302
VP+LLR +L
Sbjct: 228 VPTLLRLLL 236
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 160 bits (408), Expect = 2e-46
Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 20/247 (8%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY EL+ +N+LAR L VAV L S+ L+ +LAV KAGAAY
Sbjct: 1 TYRELDERANRLARHLRAAGGVGP--------GDRVAVLLERSAELVVAILAVLKAGAAY 52
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+PLD P +R+ IL +A L++ + LA V+ L L L + +
Sbjct: 53 VPLDPAYPAERLAFILEDAGARLLLTD-SALASRLAGLVLPVILLDPLELAALDDAPAPP 111
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
P ++ D D+A V+YTSGSTG PKGV + H ++N LAW + P +RV
Sbjct: 112 PPDAPSGPD-------DLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRV 164
Query: 238 GAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTL-EKYKVERLVLVPS 296
F +L+F +V EI+G LL+ +++ P D R+ L+ L ++ V L L PS
Sbjct: 165 LQF-ASLSFDASVEEIFGALLAG--ATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPS 221
Query: 297 LLRSMLM 303
LL +
Sbjct: 222 LLALLAA 228
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 136 bits (344), Expect = 9e-37
Identities = 80/270 (29%), Positives = 115/270 (42%), Gaps = 68/270 (25%)
Query: 32 NAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDH 91
A PD A+ F + TY+EL+ +N+LA H + P
Sbjct: 1 RAQTHPDAVAVDFWDGSL--------TYAELDRRANKLAH---HLISLGVRP------GD 43
Query: 92 IVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN 151
IVA+ L S L +LAV KAGAAY+P+D +AP +R++ I+ ++
Sbjct: 44 IVALCLERSPWLYVAILAVLKAGAAYVPIDPSAPVERLQFIIEDSGA------------- 90
Query: 152 LAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
VL+ +D A V+YTSGSTG PKGV
Sbjct: 91 -----TVVLTS----------------------------SPDDPAYVIYTSGSTGKPKGV 117
Query: 212 RLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRD 271
+ H I N L + A P +RV F ++ F ++ EI+ LL+ GG L+IP +
Sbjct: 118 VITHRNICNFLRAEGAILGIRPGDRVLQF-ASIAFDVSILEIFTTLLA---GGTLVIPPE 173
Query: 272 VTRNPDQLIGTLEKYKVERLVLVPSLLRSM 301
R D L L + +V L PSLL +
Sbjct: 174 ELRLED-LAEFLNRLRVTVAHLTPSLLALL 202
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 136 bits (345), Expect = 1e-36
Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 38/267 (14%)
Query: 37 PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
PD AL++ ++ +L TY+ELN +N+LAR L + V GD +VA+
Sbjct: 1 PDAIALVYGDR---SL-----TYAELNERANRLARRLRA----RGV----GPGD-VVALL 43
Query: 97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
L S L+ +LA+ KAGAAY+PLD P +R+ +L ++ +++ + A A +
Sbjct: 44 LERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQL 103
Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
V+ +L A + + D+A V+YTSGSTG PKGV +PH
Sbjct: 104 PLVILEEELDAEDAGPPAPAVDAD-------------DLAYVMYTSGSTGRPKGVAVPHR 150
Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS-EIWGPLLS-ARCGGVLIIPRDVTR 274
++ RL P +R + L+F DA + EIWG LL+ R ++I ++
Sbjct: 151 GVV-RLVRNTNYIALDPDDRF-LQLSPLSF-DASTFEIWGALLNGGRL---VLIDKETLL 204
Query: 275 NPDQLIGTLEKYKVERLVLVPSLLRSM 301
+PD+L + + V L L +L +
Sbjct: 205 DPDRLARLIAEQGVTVLWLTAALFNQL 231
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 138 bits (348), Expect = 1e-36
Identities = 93/279 (33%), Positives = 137/279 (49%), Gaps = 36/279 (12%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
+H +FE+ AA +PD AL+ Q TY+EL++ +N+LAR L + V
Sbjct: 229 IHLLFEEQAATTPDAVALVRGGQQL--------TYAELDARANRLARLL----ISLGVGP 276
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
VA+ S L+ LLAV KAGAAY+PLD P +R+ +IL ++RP L++ +
Sbjct: 277 GET-----VAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQ 331
Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
+ + LP L L A + + +A ++YTSGS
Sbjct: 332 AHLRVD--------DVGLPGLALDDALSEIPDTDPIPQAL------LGDALAYIIYTSGS 377
Query: 205 TGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGG 264
TG PKGVR+ H + N L A F +RV A +L+F +V EI+G LL G
Sbjct: 378 TGQPKGVRIEHRALANLLNDAGARFGLDADDRVLAL-ASLSFDASVFEIFGALL---EGA 433
Query: 265 VLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
L++ P + +P L+ LE + L+LVP LLR +L
Sbjct: 434 RLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLL 472
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 137 bits (346), Expect = 6e-36
Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 31/284 (10%)
Query: 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
++ +HR+FE+ +P+ AL F E+ TL Y+ELN +N+LA L+
Sbjct: 510 QRGVHRLFEEQVERTPEAPALAFGEE---TL-----DYAELNRRANRLAHALIE------ 555
Query: 82 VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
D +V V++ S ++ LLA+ KAG AY+PLD P +R+ ++L ++ L+
Sbjct: 556 ---RGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLL 612
Query: 142 IAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYT 201
++++ + G VL L + S N PG L+ +N +A V+YT
Sbjct: 613 LSQSHLGRKLPLAAGVQVLDLDRPAAWLEGYSEEN-PGTE-LNPEN-------LAYVIYT 663
Query: 202 SGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR 261
SGSTG PKG H + NRL W + + V KT +F +V E + PL+S
Sbjct: 664 SGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTV-LQKTPFSFDVSVWEFFWPLMS-- 720
Query: 262 CGGVLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304
G L++ R+P +L+ + + V+ L VPS+L++ L
Sbjct: 721 -GARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQD 763
Score = 125 bits (315), Expect = 6e-32
Identities = 78/281 (27%), Positives = 141/281 (50%), Gaps = 31/281 (11%)
Query: 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
+ +H++ + A ++PD A++F+E+ L TY+ELN +N+LA H L +
Sbjct: 4550 TRCVHQLVAERARMTPDAVAVVFDEE---KL-----TYAELNRRANRLA----HALIARG 4597
Query: 82 VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
V E +V +++ S+ ++ LLAV KAG AY+PLD P +R+ +++ ++ L+
Sbjct: 4598 VGPEV-----LVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALL 4652
Query: 142 IAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYT 201
+ ++ G L+L + +H+ LH DN +A V+YT
Sbjct: 4653 LTQSHLLQRLPIPDGLASLALDRDEDWEGFPAHDP---AVRLHPDN-------LAYVIYT 4702
Query: 202 SGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR 261
SGSTG PKGV + H ++N L + +P +RV F + +F + ++ PL+
Sbjct: 4703 SGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQF-MSFSFDGSHEGLYHPLI--- 4758
Query: 262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
G ++I D +P++L + +++V LV P L+ +
Sbjct: 4759 NGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLA 4799
Score = 117 bits (295), Expect = 3e-29
Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 31/291 (10%)
Query: 8 ILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASN 67
IL D E + +H+ + AA +P+ A++F +Q +Y+EL+S +N
Sbjct: 1988 ILADWDRTPEAYPRGPGVHQRIAEQAARAPEAIAVVFGDQHL--------SYAELDSRAN 2039
Query: 68 QLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQ 127
+LA L + V E + VA++ S L+ LLAV KAG AY+PLD P +
Sbjct: 2040 RLAHRLR----ARGVGPEVR-----VAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAE 2090
Query: 128 RVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDN 187
R+ ++L ++ L++ + G L L + + L +N
Sbjct: 2091 RLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRDAEWADYPDTAP---AVQLAGEN 2147
Query: 188 NNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFV 247
+A V+YTSGSTG+PKGV + H ++ + SP++ F + +F
Sbjct: 2148 -------LAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQF-MSFSFD 2199
Query: 248 DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLL 298
A + + PLL+ G ++I D +P+QL +E++ V L P L
Sbjct: 2200 GAHEQWFHPLLN---GARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYL 2247
Score = 91.6 bits (227), Expect = 2e-20
Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 34/300 (11%)
Query: 3 PNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSEL 62
+L+ + + E+ +HR+FE+ +PD AL F EQ Y+EL
Sbjct: 3037 EERGQLLEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQRLS--------YAEL 3088
Query: 63 NSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV 122
N +N+LA H L + V D +V V++ S ++ LLA+ KAG AY+PLD
Sbjct: 3089 NRRANRLA----HRLIERGV-----GPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDP 3139
Query: 123 TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM 182
PE+R+ ++L ++ L+++++ L LP + + +
Sbjct: 3140 EYPEERLAYMLEDSGAQLLLSQSH-------------LRLPLAQGVQVLDLDRGDENYAE 3186
Query: 183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKT 242
+ N +A V+YTSGSTG PKGV + H + N L W + +RV F T
Sbjct: 3187 ANPAIRTMPEN-LAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQF-T 3244
Query: 243 ALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
+F V E++ PL+S V++ + R+P L+ + V+ L PS+L++ L
Sbjct: 3245 TFSFDVFVEELFWPLMSG--ARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFL 3302
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 132 bits (335), Expect = 1e-35
Identities = 77/267 (28%), Positives = 120/267 (44%), Gaps = 70/267 (26%)
Query: 37 PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
PD AL +++ TL +Y+EL+ SNQLA L V GD V V
Sbjct: 1 PDAIALRDDDR---TL-----SYAELDERSNQLA----ARLRALGVG----PGD-RVGVL 43
Query: 97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
L S+ L+ LLA+ KAGAAY+PLD + P +R++++L +A P L++ +
Sbjct: 44 LERSADLVAALLAILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLTD------------ 91
Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
+D+A V+YTSGSTG PKGV + H
Sbjct: 92 -----------------------------------PDDLAYVIYTSGSTGKPKGVEVSHR 116
Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII-PRDVTRN 275
++N L S+R+ A T ++F +V E+ PLL G ++I + R+
Sbjct: 117 ALVNFLLSMARRPGLGASDRLLAV-TTISFDISVLELLLPLL---SGATVVIASAETVRD 172
Query: 276 PDQLIGTLEKYKVERLVLVPSLLRSML 302
P++L + ++ + P+ R ML
Sbjct: 173 PERLARLIADERITIMQATPATWR-ML 198
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 133 bits (337), Expect = 9e-35
Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 31/292 (10%)
Query: 12 RDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLAR 71
R A Y +H++ E A P+ AL+F EQ L +Y+ELN +N+LA
Sbjct: 501 RWNAPATEYAPDCVHQLIEAQARQHPERPALVFGEQ---VL-----SYAELNRQANRLAH 552
Query: 72 GLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKH 131
+ P D +V +++ S ++ LLAV KAG AY+PLD P+ R+ +
Sbjct: 553 ---VLIAAGVGP------DVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAY 603
Query: 132 ILNEARPLLVIAENEQACENLAYKGRTVLSLPQL-RLLSASLSHNNIPGESMLHSDNNNE 190
+L+++ L++ ++ + G L L + LL HN
Sbjct: 604 MLDDSGVRLLLTQSHLLAQLPVPAGLRSLCLDEPADLLCGYSGHNPEV----------AL 653
Query: 191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV 250
+++A V+YTSGSTG PKGV + H + N + + + + + F V
Sbjct: 654 DPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSM-LMVSTFAFDLGV 712
Query: 251 SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
+E++G L A + ++P D R+ + + V L +VPS L+++L
Sbjct: 713 TELFGAL--ASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALL 762
Score = 129 bits (326), Expect = 3e-33
Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 29/278 (10%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
+H++ E AA +P+ AL+F EQ+ TY ELN +N+LA H L V
Sbjct: 1576 VHQLIEDQAAATPEAVALVFGEQEL--------TYGELNRRANRLA----HRLIALGV-- 1621
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
+ +V +++ S ++ LLA+ KAG AY+PLD P +R+ +++ ++ L++ +
Sbjct: 1622 ---GPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQ 1678
Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
+ L LR L + + G S + N N +A V+YTSGS
Sbjct: 1679 SH-LQARLP-------LPDGLRSLVLDQEDDWLEGYSDSNPAVNLAPQN-LAYVIYTSGS 1729
Query: 205 TGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGG 264
TG PKG H ++NRL + S ++ V T+ F +V E++ PL++
Sbjct: 1730 TGRPKGAGNRHGALVNRLCATQEAYQLSAADVV-LQFTSFAFDVSVWELFWPLING--AR 1786
Query: 265 VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
++I P R+P+QLI +E+ +V L VPS+L+ +L
Sbjct: 1787 LVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824
Score = 122 bits (309), Expect = 5e-31
Identities = 72/302 (23%), Positives = 130/302 (43%), Gaps = 32/302 (10%)
Query: 3 PNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSEL 62
+L + E+ +H++ E A +P+ AL+F +Q +Y+EL
Sbjct: 3075 HERRQVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQQL--------SYAEL 3126
Query: 63 NSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV 122
N +N+LA L+ D +V V++ S +I LLAV KAG AY+PLD
Sbjct: 3127 NRRANRLAHRLI---------AIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDP 3177
Query: 123 TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM 182
P +R+ +++ ++ L++ + + LP +A
Sbjct: 3178 EYPRERLAYMIEDSGVKLLLTQ-----------AHLLEQLPAPAGDTALTLDRLDLNGYS 3226
Query: 183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKT 242
++ + ++A V+YTSGSTG PKGV + H + N L W + ++RV F
Sbjct: 3227 ENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLF-M 3285
Query: 243 ALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
+ +F A L+ CGG L++ + +P++L + +++ P+ L+
Sbjct: 3286 SFSFDGAQERFLWTLI---CGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFA 3342
Query: 303 MF 304
Sbjct: 3343 ED 3344
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 128 bits (324), Expect = 5e-33
Identities = 79/270 (29%), Positives = 120/270 (44%), Gaps = 35/270 (12%)
Query: 30 EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDG 89
+ AA +PD AL + +Y E+ LA + L + V + G
Sbjct: 465 AQQAAKTPDAPALAD---ARYQF-----SYREMREQVVALA----NLLRERGV----KPG 508
Query: 90 DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC 149
D VAV+L S L L A+ +AGAA+LPLD P+ R+K +L +ARP L+I +Q
Sbjct: 509 D-SVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLP 567
Query: 150 ENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPK 209
+ L+ A G + L Q + A +++TSGSTG PK
Sbjct: 568 R---FADVPDLTSLCYNAPLAP------QGAAPLQLS----QPHHTAYIIFTSGSTGRPK 614
Query: 210 GVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII- 268
GV + I+NRL W +P + + V KT +F +V E + P + G L++
Sbjct: 615 GVMVGQTAIVNRLLWMQNHYPLTADDVV-LQKTPCSFDVSVWEFFWPFI---AGAKLVMA 670
Query: 269 PRDVTRNPDQLIGTLEKYKVERLVLVPSLL 298
+ R+P + +Y V VPS+L
Sbjct: 671 EPEAHRDPLAMQQFFAEYGVTTTHFVPSML 700
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 115 bits (289), Expect = 4e-29
Identities = 81/279 (29%), Positives = 115/279 (41%), Gaps = 74/279 (26%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
LH + E A +PD A++ ++ +L TY+ELN +N+LA L
Sbjct: 1 LHELVEAQAERTPDAIAVVCGDE---SL-----TYAELNRRANRLAARLRAAGVGP---- 48
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
+ V V L S L+ LLAV KAGAAY+PLD P +R+ +IL +A LV+
Sbjct: 49 -----ESRVGVCLRRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLT- 102
Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
+D+A V+YTSGS
Sbjct: 103 ----------------------------------------------DPDDLAYVIYTSGS 116
Query: 205 TGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAF-KTALTFVDAVSEIWGPLLSARCG 263
TG PKGV + H L QWA +S E G T++ F +V EI+ PL G
Sbjct: 117 TGRPKGVAIEHRNAAALL--QWAAAVFSAEELAGVLAATSICFDLSVFEIFVPLS---TG 171
Query: 264 GVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
G +++ + L K +V + VPS R +L
Sbjct: 172 GRVVLADNAL----ALPDLPAKAEVTLINTVPSAARELL 206
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 112 bits (282), Expect = 6e-28
Identities = 78/268 (29%), Positives = 117/268 (43%), Gaps = 37/268 (13%)
Query: 37 PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
PD TA+I TL TY EL +N +A L V GD VAV
Sbjct: 1 PDATAVI---DGAGTL-----TYGELARRANAIA----AALRAAGVAP----GDL-VAVV 43
Query: 97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
+ I +L + AGAAY+P+D P +R IL A V+ +
Sbjct: 44 MPKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAGARAVLTD------------ 91
Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
L+ P+ ++ + ES + D+A V++TSGSTG PKGV + H
Sbjct: 92 -PGLAQPEEAPDLLVVADDAAAAESPAPPPPRVDPD-DLAYVIFTSGSTGEPKGVMITHR 149
Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRN- 275
+N + F P++RV A +AL F +V +I+G L G L++P + R
Sbjct: 150 AAVNTILDVNRRFGVGPADRVLAL-SALHFDLSVYDIFGAL---SAGAALVLPDEARRRD 205
Query: 276 PDQLIGTLEKYKVERLVLVPSLLRSMLM 303
PD ++++ V VP+L+ ML+
Sbjct: 206 PDHWAELVQRHGVTVWNSVPALM-DMLL 232
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 109 bits (274), Expect = 8e-27
Identities = 75/285 (26%), Positives = 119/285 (41%), Gaps = 25/285 (8%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
L + E+ A +PD ALIF + TY EL+ +N+LA L
Sbjct: 13 LASLLERAARRNPDRPALIFLGRGGRL------TYRELDRRANRLAAALQALGVKP---- 62
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVI-- 142
GD VA+ L S + LA +AGA +PL+ + + +ILN+A ++I
Sbjct: 63 ----GDR-VAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITS 117
Query: 143 ---AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVL 199
A +A VL + +D +D+A +L
Sbjct: 118 AEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLL 177
Query: 200 YTSGSTGIPKGVRLPHE-VILNRLA-WQWATFPYSPSERVGAFKTALTFVDAVSEIWGPL 257
YTSG+TG+PKGV L H ++ N +P + V ++ L + +
Sbjct: 178 YTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSW-LPLFHIFGLIVGLLAP 236
Query: 258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
L GG L++ +P++++ +EKYKV L VP+ LR +L
Sbjct: 237 LLG--GGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELL 279
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 108 bits (272), Expect = 1e-26
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 69/273 (25%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
AA PD AL+ DTL TY+EL +++LA LL P
Sbjct: 1 AAKHPDRPALVV---GGDTL-----TYAELKERADRLAARLLALGGRAGDP--------- 43
Query: 93 VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENL 152
VAV S +LA KAGAAY+PLD + P +R+ IL A P ++A+ +
Sbjct: 44 VAVYGHKSPDAYAAILACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADPD------ 97
Query: 153 AYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVR 212
D+A +L+TSGSTG PKGV+
Sbjct: 98 -----------------------------------------DLAYILFTSGSTGKPKGVQ 116
Query: 213 LPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL-IIPRD 271
+ H + + L W F + + +F +V +++ L S G L +IP++
Sbjct: 117 ISHANLASFLDWMVEDFDLTEGDVFSNQ-APFSFDLSVFDLFPALAS---GATLYVIPKE 172
Query: 272 VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304
+P L L+++ + V VPS +L+
Sbjct: 173 QIADPLALFEFLKEHGLTVWVSVPSFASLLLLS 205
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 103 bits (258), Expect = 2e-24
Identities = 87/271 (32%), Positives = 137/271 (50%), Gaps = 33/271 (12%)
Query: 30 EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAV-PNENQD 88
+ A +P+ AL+++ D Y+EL++ +N+LA H+L K V P
Sbjct: 1138 NEQARQTPERIALVWDGGSLD--------YAELHAQANRLA----HYLRDKGVGP----- 1180
Query: 89 GDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQA 148
D VA++ S L+ LLA+ KAG AY+PLD P +R+ ++L ++ L++ ++
Sbjct: 1181 -DVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLL 1239
Query: 149 CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIP 208
+G + ++L L L S PG LH DN +A V+YTSGSTG P
Sbjct: 1240 ERLPQAEGVSAIALDSLHLDSWPSQ---APGLH-LHGDN-------LAYVIYTSGSTGQP 1288
Query: 209 KGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII 268
KGV H + RL W AT+ S+ V K ++F +V E + PL++ C VL
Sbjct: 1289 KGVGNTHAALAERLQWMQATYALDDSD-VLMQKAPISFDVSVWECFWPLITG-CRLVLAG 1346
Query: 269 PRDVTRNPDQLIGTLEKYKVERLVLVPSLLR 299
P + R+P ++ +++Y V L VP LL+
Sbjct: 1347 PGE-HRDPQRIAELVQQYGVTTLHFVPPLLQ 1376
Score = 99.5 bits (248), Expect = 5e-23
Identities = 94/309 (30%), Positives = 136/309 (44%), Gaps = 65/309 (21%)
Query: 12 RDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLAR 71
RD LE+ Y +FE A P A +Q Y+ELN A+N+L
Sbjct: 3714 RDYPLEQSYVR-----LFEAQVAAHPQRIAASCLDQQWS--------YAELNRAANRLGH 3760
Query: 72 GLLHFLHTKAVPNENQDG-DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVK 130
L G D VA+ L+ +++ +KAGA YLPLD P QR++
Sbjct: 3761 ALR----------AAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQ 3810
Query: 131 HILNEAR-PLLVIAENEQACENLAYKGRTVLSL------PQLRLL-----SASLSHNNIP 178
I+ +R P+LV AC + R +L P+L + SHN P
Sbjct: 3811 RIIELSRTPVLVC---SAAC---REQARALLDELGCANRPRLLVWEEVQAGEVASHN--P 3862
Query: 179 GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPY-SPSERV 237
G ++S +N +A V+YTSGSTG+PKGV + +LN Q + PY + SE
Sbjct: 3863 G---IYSGPDN-----LAYVIYTSGSTGLPKGVMVEQRGMLNN---QLSKVPYLALSEAD 3911
Query: 238 GAFKTALTFVDAVSEIW----GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVL 293
+TA D +W PL AR V I+P + +P L+ ++ + L
Sbjct: 3912 VIAQTASQSFDI--SVWQFLAAPLFGAR---VEIVPNAIAHDPQGLLAHVQAQGITVLES 3966
Query: 294 VPSLLRSML 302
VPSL++ ML
Sbjct: 3967 VPSLIQGML 3975
Score = 67.9 bits (166), Expect = 1e-12
Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 45/280 (16%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
LH +F AA +P AL F Q TL +Y+EL++ +N+LAR L
Sbjct: 2190 LHGLFAAQAARTPQAPALTFAGQ---TL-----SYAELDARANRLARAL----------R 2231
Query: 85 ENQDGDHI-VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIA 143
E G + V ++L S ++ LLA+ KAG AY+PLD P +R+ +++ ++ L+++
Sbjct: 2232 ERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLS 2291
Query: 144 ENEQACENLAYKGRTVLSLPQ------LRLLSASLSHNNIPGESMLHSDNNNEQSNDIAI 197
+ + LP L +A+L+ + A
Sbjct: 2292 DRALF--------EALGELPAGVARWCLEDDAAALAA--YSDAPL----PFLSLPQHQAY 2337
Query: 198 VLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSE-IWGP 256
++YTSGSTG PKGV + H I F + F + + F DA SE + P
Sbjct: 2338 LIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFYS-INF-DAASERLLVP 2395
Query: 257 LLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPS 296
LL CG +++ +++ + + +V L PS
Sbjct: 2396 LL---CGARVVLRAQGQWGAEEICQLIREQQVSILGFTPS 2432
Score = 48.6 bits (116), Expect = 3e-06
Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 25/189 (13%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
AA +PD AL F D V+ +Y +L+ AR + L +A GD
Sbjct: 19 AAQTPDRLALRFLADDPGEGVVL--SYRDLD----LRARTIAAALQARASF-----GDR- 66
Query: 93 VAVSLAPS-----SGLIQVLLAVWKAGAAYLPLDVTAPEQ-RVKHILNEARPLLVIAENE 146
AV L PS + L A A AY P Q R+ I+ +A P L++ +
Sbjct: 67 -AVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVAD 125
Query: 147 QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTG 206
L + + P+L L + + Q +DIA + YTSGST
Sbjct: 126 LRDSLLQMEELAAANAPEL------LCVDTLDPALAEAWQEPALQPDDIAFLQYTSGSTA 179
Query: 207 IPKGVRLPH 215
+PKGV++ H
Sbjct: 180 LPKGVQVSH 188
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 95.4 bits (238), Expect = 6e-22
Identities = 62/278 (22%), Positives = 108/278 (38%), Gaps = 33/278 (11%)
Query: 37 PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
PD+TA+IF+ +D +T Y +L +LA L K GD VA+
Sbjct: 24 PDDTAIIFDGEDGLFRELT---YGDLRREVARLANALKDLGGVK--------GDR-VAIY 71
Query: 97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
+ S + LLA + GA + + V + + P ++IA++ G
Sbjct: 72 MPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTF-----RNG 126
Query: 157 RTVLSLPQLRLLSAS---LSHNNIPGESMLHSDNNNEQ-----SNDIAIVLYTSGSTGIP 208
+ + L + +S + + + + + + ++D +LYTSG+TG P
Sbjct: 127 KEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKP 186
Query: 209 KGVRLPHEVILNRLAWQWAT-FPYSPSERVGAFKTALTF--VDAVSEIWGPLLSARCGGV 265
KG+ H L P +R + ++ ++ PL S
Sbjct: 187 KGIVHSHGGYLVEHRLTAKFHGDLLPGDRF--WNSSDPGWIYGLWYSVFSPLASGAT--T 242
Query: 266 LIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
++ +P++L LEKYKV P+ LR LM
Sbjct: 243 VLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLR-RLM 279
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 88.3 bits (219), Expect = 2e-19
Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 35/282 (12%)
Query: 23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAV 82
K + I A P A ++ Q+ TY +L S++LA + + K
Sbjct: 1 KLIEAIQA-FAETYPQTIAYRYQGQEL--------TYQQLKEQSDRLAAFIQKRILPKKS 51
Query: 83 PNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVI 142
P + V ++ L K+G AY+P+D + P +R++ I+ A P LVI
Sbjct: 52 P---------IIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVI 102
Query: 143 AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTS 202
E + + + + +++L L S + + + D+N ++YTS
Sbjct: 103 HTAELSIDAVGTQ---IITLSALEQAET--SGGPVSFDHAVKGDDNY-------YIIYTS 150
Query: 203 GSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC 262
GSTG PKGV++ H+ +++ W A FP + + +F +V +++ L S
Sbjct: 151 GSTGNPKGVQISHDNLVSFTNWMLADFP-LSEGKQFLNQAPFSFDLSVMDLYPCLAS--- 206
Query: 263 GGVLI-IPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
GG L + +D+T N L L K + V PS + L+
Sbjct: 207 GGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLL 248
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 83.7 bits (208), Expect = 5e-18
Identities = 67/283 (23%), Positives = 110/283 (38%), Gaps = 57/283 (20%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
L + E+ A PD AL F + L TY+EL+ S++ A +L V
Sbjct: 1 LADLLERAARRFPDRPALTFFGR---KL-----TYAELDELSDRFAA----YLQQLGV-- 46
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
+ GD VA+ L + KAGA +P++ + ++H LN++ ++I
Sbjct: 47 --KKGDR-VALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIV- 102
Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
A L+ L LS +D+A++ YT G+
Sbjct: 103 --------AISFEDALASGAPLPLPVELSP------------------DDLAVLQYTGGT 136
Query: 205 TGIPKGVRLPHE-VILNRLAWQ---WATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSA 260
TG+PKG L H ++ N Q W +R F TAL LL
Sbjct: 137 TGVPKGAMLTHRNLVAN--VQQIAAWVKDLREGEDR---FLTALPLFHIFGLTVNMLLGL 191
Query: 261 RCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
R G +++P P ++ +++Y+ VP+L ++L
Sbjct: 192 RLGATNVLVPN---FRPINVLKEIKRYRFTIFPGVPTLYNALL 231
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 82.7 bits (205), Expect = 1e-17
Identities = 63/266 (23%), Positives = 105/266 (39%), Gaps = 39/266 (14%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
T+++L + +LA+GL + GD +VA+ S V L AG
Sbjct: 12 TFADLLKKALRLAKGL--------RKLGLKQGD-VVALISPNSIEFPPVFLGCLAAGGIV 62
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENE------QACENLAYKGRTVLSLPQLRLLSAS 171
+ + + H L ++P L+ + + +A + L R ++ L ++
Sbjct: 63 SAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIV-------LDSA 115
Query: 172 LSHNNIPGESMLHSDNNNEQS----------NDIAIVLYTSGSTGIPKGVRLPHEVILNR 221
+ E +L E +D A +LY+SG+TG+PKGV L H+ I+
Sbjct: 116 -PDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIAN 174
Query: 222 LAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIG 281
L+ T +P T L F + L S CG +II + + +
Sbjct: 175 LSQVQDTLKGNPDSSNDVVLTFLPF-YHAYGLTTTLASLLCGATVIIMPKF--DSETFLK 231
Query: 282 TLEKYKVERLVLVPSLLRSMLMFLKM 307
+EKYKV L LVP + + K
Sbjct: 232 LIEKYKVTSLFLVPPI---AVALAKS 254
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 82.3 bits (204), Expect = 2e-17
Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 59/285 (20%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
+ I E+ A PD A + + TY +L S+ LA + P
Sbjct: 5 IETI-EEFAQTQPDFPAYDYLGE-------KL-TYGQLKEDSDALAAFIDSLKLPDKSP- 54
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
+ V S ++ L KAG AY+P+DV++P +R++ I+ A+P L+IA
Sbjct: 55 --------IIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIAT 106
Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
E L G V++L + L + N ++N +++TSG+
Sbjct: 107 EE---LPLEILGIPVITLDE---LKDIFATGNPYDFDHAVKGDDN------YYIIFTSGT 154
Query: 205 TGIPKGVRLPHEVILNRLAW-----------QW-ATFPYSPSERVGAFKTALTFVDAVSE 252
TG PKGV++ H+ +++ W Q+ PYS F L+ +D
Sbjct: 155 TGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYS-------FD--LSVMD---- 201
Query: 253 IWGPLLSARCGGVLI-IPRDVTRNPDQLIGTLEKYKVERLVLVPS 296
P L++ GG L+ +P+D+T N QL TL + + V PS
Sbjct: 202 -LYPTLAS--GGTLVALPKDMTANFKQLFETLPQLPINVWVSTPS 243
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 78.8 bits (195), Expect = 2e-16
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 73/195 (37%)
Query: 38 DNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL 97
D AL+ + + TY EL++ S +LA+ LL GD VAV
Sbjct: 1 DRIALVDGGR--------SLTYGELDARSGRLAKALLALGLLP--------GDR-VAVLA 43
Query: 98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR 157
S+ + + LA+W+AG +PL+ + P + +IL++++P L++
Sbjct: 44 PKSAEYVVLYLAIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV--------------- 88
Query: 158 TVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEV 217
D A+++YTSG+TG PKGV L H
Sbjct: 89 ------------------------------------DPALIIYTSGTTGRPKGVVLTHGN 112
Query: 218 ILNRL-----AWQWA 227
+ AW+W
Sbjct: 113 LAANARALVEAWRWT 127
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 72.2 bits (178), Expect = 4e-14
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 32/210 (15%)
Query: 27 RIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNEN 86
+FE+ AA PD AL+FE+Q +Y+ELN+ +N+ A H+ + V
Sbjct: 41 DVFEEAAARHPDRPALLFEDQSI--------SYAELNARANRYA----HWAAARGV---- 84
Query: 87 QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENE 146
GD +VA+ + + L + K GA L+ + H LN +I E
Sbjct: 85 GKGD-VVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEE 143
Query: 147 QACENLAYKGRTVLSLPQLRLLSASLSHNNIPG-------ESMLHSDNNNE-----QSND 194
A++ RL A + P + N + D
Sbjct: 144 LVE---AFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKD 200
Query: 195 IAIVLYTSGSTGIPKGVRLPHEVILNRLAW 224
A +YTSG+TG+PK + H L +
Sbjct: 201 TAFYIYTSGTTGLPKAAVMSHMRWLKAMGG 230
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 71.5 bits (176), Expect = 7e-14
Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 59/297 (19%)
Query: 28 IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQ 87
+FE A PD AL+ ++ +T Y+EL +N+LA H+L + +
Sbjct: 8 LFEAVADAVPDRVALVCGDR-----RLT---YAELEERANRLA----HYLIAQGL----G 51
Query: 88 DGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV----TAPEQRVKHILNEARPLLVIA 143
GDH V + ++ +L +KA A P++V E ++++L+++ + ++
Sbjct: 52 PGDH-VGIYARNRIEYVEAMLGAFKARAV--PVNVNYRYVEDE--LRYLLDDSDAVALVY 106
Query: 144 ENEQACENLAYKGRTVL-SLPQLRLL-------SASLSHNNIPGESMLHS----DNNNEQ 191
E E A + VL LP+LR L L + E L + + E+
Sbjct: 107 ERE-----FAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGER 161
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHE----VILNRLAWQWATFPYSP---SERVGAFKTAL 244
S D +LYT G+TG+PKGV E V+L + ++R A
Sbjct: 162 SPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMR 221
Query: 245 TFV-------DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLV 294
F + L S G +++ DV + D++ T+E+ KV + +V
Sbjct: 222 RFPAPPLMHGAGQWAAFAALFS---GQTVVLLPDVRFDADEVWRTIEREKVNVITIV 275
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 70.4 bits (173), Expect = 9e-14
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI 253
D A +LYTSG+TG PKGV L H +L + + + + L V V
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSV-LPLFHV--VGGG 57
Query: 254 WGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN 311
G L + GG V++ P + +E+Y+V L VP+L ++ + G +
Sbjct: 58 SGLLGALLAGGTVVLYEGF--PFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYD 114
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 68.3 bits (168), Expect = 7e-13
Identities = 80/301 (26%), Positives = 122/301 (40%), Gaps = 61/301 (20%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
+ RI A PD A+ F+ + TY+EL+ N+LA + L V
Sbjct: 8 IGRILRHGARKHPDKEAVYFDGR--------RTTYAELDERVNRLA----NALRALGV-- 53
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV-TAPEQRVKHILNEARPLLVIA 143
+ GD VAV S ++ AV K GA P+++ PE+ + +ILN+A +V+
Sbjct: 54 --KKGDR-VAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEE-IAYILNDAEDRVVLV 109
Query: 144 ENE------QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML--HSDNNNEQ---S 192
++E L ++ A E +L SD +
Sbjct: 110 DSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEY---EELLAAASDTFDFPDIDE 166
Query: 193 NDIAIVLYTSGSTGIPKGVRLPH-EVILNRLAWQWATFPYSPSER---------VGAFKT 242
ND A +LYTSG+TG PKGV L H + L+ LA A S + V A
Sbjct: 167 NDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVC-AWLKLSRDDVYLVIVPMFHVHA--- 222
Query: 243 ALTFVDAVSEIWG-PLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSM 301
WG P L+ G +IPR +P+ L+ +E +V VP++ + +
Sbjct: 223 -----------WGLPYLALMAGAKQVIPRRF--DPENLLDLIETERVTFFFAVPTIWQML 269
Query: 302 L 302
L
Sbjct: 270 L 270
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 65.7 bits (161), Expect = 6e-12
Identities = 69/289 (23%), Positives = 107/289 (37%), Gaps = 52/289 (17%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
A D A +F +Q TY+ELN+ + A L K GD
Sbjct: 15 ARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGK--------GDR- 57
Query: 93 VAVSLAPSSGLIQVLLAVWKAGAAYLPLD--VTAPEQRVKHILNEARPLLVIAENEQACE 150
VA+ S + L KAGA +PL+ TA E +IL +
Sbjct: 58 VAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADE--AAYILARGDAKALFVL--GLFL 113
Query: 151 NLAYKGRTVLSLPQLRLL-------SASLSHNNIPGESMLHSDNNNEQSN-----DIAIV 198
+ Y LP L + + L + + E++ D+A +
Sbjct: 114 GVDYSA--TTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVADI 171
Query: 199 LYTSGSTGIPKGVRLPHEVILNRLAWQWAT-FPYSPSERVGAFKTAL----TFVDAVSEI 253
L+TSG+TG PKG L H +L A WA + +R A A F +
Sbjct: 172 LFTSGTTGRPKGAMLTHRQLL-SNAADWAEYLGLTEGDRYLA---ANPFFHVFGYKAG-V 226
Query: 254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
PL+ R +L +P +PD++ +E ++ L P++ S+L
Sbjct: 227 NAPLM--RGATILPLP---VFDPDEVFRLIETERITVLPGPPTMYNSLL 270
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 65.3 bits (160), Expect = 7e-12
Identities = 59/288 (20%), Positives = 104/288 (36%), Gaps = 60/288 (20%)
Query: 17 EKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHF 76
+ ++ L + NAA PD TA++ D + TY EL++A ++LA GLL
Sbjct: 9 AGYWGDQTLGDLLAANAARHPDRTAVV----DGPRRL----TYRELDAAVDRLAAGLLAL 60
Query: 77 LHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEA 136
GD ++ V L + + + A++K GA + + H ++
Sbjct: 61 GIGP--------GDRVL-VQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQS 111
Query: 137 RPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIA 196
I + + + A R +L E+ D+A
Sbjct: 112 EAKAYIIADRFSGFDYAALARELL-----------------------------EELPDVA 142
Query: 197 IVLYTSGSTGIPKGVRLPHE--VILNRLAWQWATFPYSPSERV-GAFKTALTFVDAVSEI 253
+ + G+TG+PK + H + R + + P A F +
Sbjct: 143 LFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGL--DPGTVYLAVLPAAHNFT-----L 195
Query: 254 WGPLL--SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLR 299
P L + GG +++ + PD +E+ KV LVP+LL
Sbjct: 196 SSPGLLGALLAGGTVVLHHPPS--PDVAFPLIEREKVTHTALVPALLN 241
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 65.0 bits (159), Expect = 1e-11
Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 27/180 (15%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY EL LA GLL ++ D I A + LA+ GA
Sbjct: 47 TYRELYERVRALASGLL------SLGIPAGDRVAIFAAN---RPEWAIADLAILALGAVS 97
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+P+ T+ +++ +ILNE+ ++ EN++ + + + L ++ +
Sbjct: 98 VPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE 157
Query: 178 PGESMLH------------------SDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
+L + +D+A ++YTSG+TG PKGV L H +L
Sbjct: 158 AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLL 217
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 64.5 bits (157), Expect = 2e-11
Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 32/284 (11%)
Query: 30 EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDG 89
EK A L PD A+I EE++ TY +L+ +++A L++ L+ K G
Sbjct: 9 EKRAYLHPDRIAIITEEEEM--------TYKQLHEYVSKVAAYLIYELNVKK-------G 53
Query: 90 DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC 149
+ I +S S I +L A+ K +PL++ E + L ++ ++ E
Sbjct: 54 ERIAILS-QNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQN 112
Query: 150 ENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIA--IVLYTSGSTGI 207
L+ + + + + + S E +N + N+ A I+ YTSG+TG
Sbjct: 113 MALSMQKVSYVQ-RVISITS--------LKEIEDRKIDNFVEKNESASFIICYTSGTTGK 163
Query: 208 PKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLI 267
PKG L E + + L + + P L A GGV+I
Sbjct: 164 PKGAVLTQENMFWNALNNTFAIDLT-MHDRSIVLLPLFHIGGIGLFAFPTLFA--GGVII 220
Query: 268 IPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN 311
+PR P + + +EK+KV ++ VP++ ++++ K TN
Sbjct: 221 VPRKF--EPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN 262
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 64.1 bits (157), Expect = 2e-11
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 27/197 (13%)
Query: 33 AALSPDN--TALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGD 90
AA PD T L ++ +++TL TY+EL+ + +A L GD
Sbjct: 3 AAAQPDARYTFLFDDDDEEETL-----TYAELDRRARAIAARLQALGAP---------GD 48
Query: 91 HIVAVSLAPSSGLIQVLLAVWKAGA----AYLPLDVTAPEQRVKHILNEARPLLVIAENE 146
V + P + AGA A P + R+ IL +A V+ +
Sbjct: 49 R-VLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSA 107
Query: 147 QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTG 206
+ L L++A + + +DIA + YTSGSTG
Sbjct: 108 VL--AALRAALAAPAALLLLLIAADDLAALAAADWRPPPPD----PDDIAFLQYTSGSTG 161
Query: 207 IPKGVRLPHEVILNRLA 223
PKGV + H +L L
Sbjct: 162 APKGVMVTHGNLLANLR 178
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 62.7 bits (153), Expect = 6e-11
Identities = 70/294 (23%), Positives = 103/294 (35%), Gaps = 54/294 (18%)
Query: 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLH 78
I K+ L A+ D ALI D TY+EL +LA GL
Sbjct: 1 IPKDLSLDSASLLFASEFGDRPALI------DAATGRALTYAELERLVRRLAAGLAARG- 53
Query: 79 TKAVPNENQDGDHIVAVSLAPSSGLIQVL-LAVWKAGAAYLPLDVTAPEQRVKHILNEAR 137
+ GD V + L+P+S V+ LAV AGA + + + ++
Sbjct: 54 -------GRKGD--VVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSG 104
Query: 138 PLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSN---- 193
L I +E L L L L ++ S D
Sbjct: 105 AKLAITTSE-----------LAEKLASLALEPVVL-LDSADDGSAAIDDLLFADEPEPPV 152
Query: 194 ------DIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFPYSPSERVGAFKTALTF 246
D+A + Y+SG+TG KGV L H +I N P E V L
Sbjct: 153 VVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLC--VLPM 210
Query: 247 VDAVSEIWGPLLSARC-----GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
I+G + V+++PR + ++ + +EKYKV L +VP
Sbjct: 211 ----FHIYGLTVILLALLRLGATVVVMPR---FDLEKFLAAIEKYKVTHLPVVP 257
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 62.0 bits (151), Expect = 8e-11
Identities = 64/260 (24%), Positives = 98/260 (37%), Gaps = 88/260 (33%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
T+ +L ASN+LA L V + GD V V L S LAV+K GA
Sbjct: 8 TFGQLKDASNRLANALREL----GV----ERGDR-VGVYLPQSPETAIAHLAVYKLGAVS 58
Query: 118 LPLDV----TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLS 173
+PL V A E R++ + AR L+
Sbjct: 59 VPLSVLFGPDAVEHRLRD--SGARVLVT-------------------------------- 84
Query: 174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN-----RLAWQWAT 228
+ S+D AI++YTSG+TG PKG H V+L L ++ A
Sbjct: 85 ----------------DGSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAP 128
Query: 229 FP----YSPSE--RVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR-NPDQLIG 281
P ++P++ +G + LL A GV ++ + R +P++
Sbjct: 129 RPGDVFWTPADWAWIGG-------------LLDVLLPALYFGVPVVAYRMQRFDPERAFA 175
Query: 282 TLEKYKVERLVLVPSLLRSM 301
+ +Y V L P+ L+ M
Sbjct: 176 LMRRYGVTNAFLPPTALKMM 195
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 59.8 bits (145), Expect = 4e-10
Identities = 59/208 (28%), Positives = 83/208 (39%), Gaps = 41/208 (19%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
LH + E AA PD TAL+ ++ TL TY+ L+ LA GL L
Sbjct: 2 LHHLLEDAAARLPDATALVHHDR---TL-----TYAALSERVLALASGL-RGLGLA--RG 50
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
E VA+ L + + AG ++P++ ++V HIL + L++
Sbjct: 51 ER------VAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVT- 103
Query: 145 NEQACENLAYKGRTVLSLPQLRLL-------SASLSHNNIPGESMLHSDN---------- 187
+ E L + LR L AS H PGE
Sbjct: 104 ---SSERLDLLHPALPGCHDLRTLIIVGDPAHASEGH---PGEEPASWPKLLALGDADPP 157
Query: 188 NNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
+ +D+A +LYTSGSTG PKGV L H
Sbjct: 158 HPVIDSDMAAILYTSGSTGRPKGVVLSH 185
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 59.9 bits (146), Expect = 5e-10
Identities = 67/297 (22%), Positives = 110/297 (37%), Gaps = 68/297 (22%)
Query: 33 AALSPDNTALIFEE-QDKDTLVITNE-TYSELNSASNQLARGLLHFLHTKAVPNENQDGD 90
A PD A+ + D + +E +++EL++ S+ +A GL + G
Sbjct: 16 AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGR--------GM 67
Query: 91 HIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE 150
V + + PS + A++KAGA + +D + +K L EA+P I
Sbjct: 68 RAV-LMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIP----- 121
Query: 151 NLAYKGRTVLSLPQLRLLSA-SLSHNNIPG----ESMLHSDNNNE------QSNDIAIVL 199
A+ R + + + ++ + G ++L +D+A +L
Sbjct: 122 -KAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAIL 180
Query: 200 YTSGSTGIPKGVRLPH-------EVILNRLAWQ-----WATFPYSPSERVGAFKTALTFV 247
+TSGSTG PKGV H E + + TFP F
Sbjct: 181 FTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFP--------------LFA 226
Query: 248 DAVSEIWGPLLSARCGGVLIIPR-DVTR----NPDQLIGTLEKYKVERLVLVPSLLR 299
L G +IP D TR +P +L +E+Y V L P+LL
Sbjct: 227 ---------LFGPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLE 274
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 59.4 bits (144), Expect = 6e-10
Identities = 51/252 (20%), Positives = 89/252 (35%), Gaps = 67/252 (26%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
+Y+EL S ++A LL L K GD VA L + L+ +LA W+ GA Y
Sbjct: 2 SYAELREQSARVA-NLLADLGVKP-------GDR-VAGLLPRTPELVVAILATWRVGAIY 52
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+PL + +++ L + +V+
Sbjct: 53 VPLFTAFGPKAIEYRLGHSGAKVVVT---------------------------------- 78
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
++ N + +D+ +YTSG+TG+PKGV +P + A+ +
Sbjct: 79 ------NAANRGKLDDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVF 132
Query: 238 GAFKTA-------LTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVER 290
+ A L + I GPL G+ + + + LE+ V
Sbjct: 133 --WNIADPGWAYGLYYA-----ITGPLAM----GITTVFLEGGFTAENTYDVLERLGVTN 181
Query: 291 LVLVPSLLRSML 302
P+ R ++
Sbjct: 182 FAGSPTAYRMLM 193
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 59.1 bits (144), Expect = 7e-10
Identities = 44/201 (21%), Positives = 73/201 (36%), Gaps = 66/201 (32%)
Query: 108 LAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRL 167
LA+ AGA +P+ T+ + V +ILN++ +V E+
Sbjct: 48 LAILAAGAVPVPIYPTSSPEEVAYILNDSGARVVFVED---------------------- 85
Query: 168 LSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL-NRLAWQW 226
+ +D+A ++YTSG+TG PKGV L H +L A
Sbjct: 86 -----------------------KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALL- 121
Query: 227 ATFPYSPSERVGAFKTALTFV------DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLI 280
P SP +RV L+F+ + + PL G + P+ L+
Sbjct: 122 EVIPLSPGDRV------LSFLPLAHVFEQRLGEYLPL---SSGARVNFAES----PETLL 168
Query: 281 GTLEKYKVERLVLVPSLLRSM 301
L + + VP + +
Sbjct: 169 EDLREVRPTVFFAVPRVWEKI 189
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 58.9 bits (143), Expect = 1e-09
Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 38/295 (12%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNE-TYSELNSASNQLARGLLHFLHTKAVP 83
+H IF NA PD T ++ D T TY ++N ASN LA H+L +
Sbjct: 238 IHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILA----HYL----LK 289
Query: 84 NENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARP--LLV 141
+ GD +V + L+ ++ V KAGA + +D P R L+ A+P L+V
Sbjct: 290 TGIKRGD-VVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIV 348
Query: 142 IA---ENEQACENLAYKGRTVLSL-PQLRLLS-ASLSHNNIPGES--MLHSDNNNEQSND 194
I +Q + K + + P L L SL ++ G +L + +
Sbjct: 349 IEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETDVLAPYQALKDTPT 408
Query: 195 IAIV--------LYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF 246
+V +TSGS GIPKGV H + W F S +++ T L+
Sbjct: 409 GVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKF----TMLSG 464
Query: 247 V--DAVS-EIWGPLLSARCGGVLIIP-RDVTRNPDQLIGTLEKYKVERLVLVPSL 297
+ D + +++ PL G L++P D P +L + KY L P++
Sbjct: 465 IAHDPIQRDMFTPLF---LGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAM 516
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 56.7 bits (138), Expect = 3e-09
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI 253
D A++LYTSG+TG PKGV L H +L A SP + L
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDV------YLLA------- 48
Query: 254 WGPLLSA----------RCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
PL A GG +++ P+ ++ +E+++V LVP++ + +L
Sbjct: 49 -APLYHAAGGLFLLPALAAGGTVVLMPKFD--PEAVLDLIERHRVTHTFLVPTMFQRLL 104
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 56.8 bits (138), Expect = 5e-09
Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 31/164 (18%)
Query: 57 ETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAA 116
+Y E+ + + GL + + I A +
Sbjct: 6 ISYKEVEERALNIGSGLRALGLKP---------GDKIGIFAENRPEWIITEQACFSQSLV 56
Query: 117 YLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNN 176
+PL T E+ +++ILNE +V C+ + V S +L L
Sbjct: 57 IVPLYDTLGEEAIEYILNETEISIVF------CDAV-----KVYSFEELEELGKKNKVPP 105
Query: 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN 220
P + D+A ++YTSG+TG PKGV L H I+
Sbjct: 106 TPPKP-----------EDLATIMYTSGTTGNPKGVMLTHGNIVA 138
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 56.1 bits (136), Expect = 8e-09
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 34/204 (16%)
Query: 28 IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQ 87
I ++A PD TAL+F + + TY+EL++A N++A LL +
Sbjct: 16 ILRRSARRYPDKTALVFGD--------RSWTYAELDAAVNRVAAALLD--------LGLK 59
Query: 88 DGDHIVAVSLAPSSGLIQVL-LAVWKAGAAYLPLDVTAPEQRVKHILN--EARPLLV--- 141
GD + A L +S +L LA +AGA ++P++ + + +IL+ AR LV
Sbjct: 60 KGDRVAA--LGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA 117
Query: 142 IAENEQACENLAYKGRTVLSL-PQLRLLSASLSHNNIPGESMLHSDNNNE-----QSNDI 195
+A +A L +LSL R + + + E +D+
Sbjct: 118 LAPTAEAALALLPVDTLILSLVLGGREAPGGW----LDFADWAEAGSVAEPDVELADDDL 173
Query: 196 AIVLYTSGSTGIPKGVRLPHEVIL 219
A +LYTSG+ +PKG L H ++
Sbjct: 174 AQILYTSGTESLPKGAMLTHRALI 197
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 54.6 bits (132), Expect = 3e-08
Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 36 SPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAV 95
D AL + D +L TY EL N+ L + EN+ V +
Sbjct: 18 RGDKIALYY---DDGSL-----TYGELQEEVNRWGNAL----RELGIERENR-----VLL 60
Query: 96 SLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK 155
L + K GA +P++ ++ LN++R +++ E+ E L
Sbjct: 61 ILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVIS-EELWEVLKPA 119
Query: 156 GRTVLSLPQLRLL----SASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
+ L + ++ +LS+ + + + ++D+A LY+SGSTG PKGV
Sbjct: 120 LQKDPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGV 179
Query: 212 RLPH 215
H
Sbjct: 180 VHLH 183
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 54.2 bits (131), Expect = 4e-08
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 31/181 (17%)
Query: 31 KNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGD 90
+ A L+PD TA+ FEE+ T+ EL+ A +A L K
Sbjct: 10 QRAFLTPDRTAIEFEEKK--------VTFMELHEAVVSVAGKLAALGVKK---------G 52
Query: 91 HIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE 150
VA+ + +I V+ A+ + GA + L+ + + L++A +I +++ +
Sbjct: 53 DRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAK 112
Query: 151 NLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKG 210
+ L A + + D ++A ++YTSG+TG PKG
Sbjct: 113 LIPGISVKFAELMNGPKEEAEI-------QEEFDLD-------EVATIMYTSGTTGKPKG 158
Query: 211 V 211
V
Sbjct: 159 V 159
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 53.1 bits (128), Expect = 6e-08
Identities = 54/253 (21%), Positives = 91/253 (35%), Gaps = 78/253 (30%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
T+ EL+ S+++ARGL K V + + P + L + A++K GA
Sbjct: 4 TFRELDERSDRIARGLRASGIRKG---------DRVVLMVPPGADLTALTFALFKVGAVP 54
Query: 118 LPLDVTAPEQRVKHILN---EARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSH 174
+ +D P KH+ EA P I
Sbjct: 55 VLID---PGMGRKHLGRCLEEAEPDAFIGIP----------------------------- 82
Query: 175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPS 234
+++D A +L+TSGSTG PKGV H ++ + +
Sbjct: 83 ----------------KADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREG 126
Query: 235 ER-VGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPR-DVTR----NPDQLIGTLEKYKV 288
+R + AF ++GP L G +IP D T +P +L + +
Sbjct: 127 DRDLAAF--------PPFALFGPAL----GVTTVIPAMDPTAPAALDPAKLAQAIREIGA 174
Query: 289 ERLVLVPSLLRSM 301
+ P+LL+++
Sbjct: 175 SCVFGSPALLKNV 187
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 53.2 bits (128), Expect = 7e-08
Identities = 56/212 (26%), Positives = 91/212 (42%), Gaps = 34/212 (16%)
Query: 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
+ L +++ A PD A++ + TYS L+ A+++LA LL K
Sbjct: 22 DASLADYWQQTARAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLL----AKG 70
Query: 82 VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
+ + GD VA L + LA K GA +PL + E + +LN+ + +
Sbjct: 71 I----EPGD-RVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMF 125
Query: 142 IA---ENEQACENLAYKGRTVLSLPQLRLL-----------SASLSHNNIPGESMLHSDN 187
A + +L + LPQL+ + S SLS E + +
Sbjct: 126 FAPTLFKQTRPVDLILPLQN--QLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAIT 183
Query: 188 NNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
+ +++A VL+TSG+ G+PKGV L H IL
Sbjct: 184 TH--GDELAAVLFTSGTEGLPKGVMLTHNNIL 213
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 52.6 bits (127), Expect = 9e-08
Identities = 41/179 (22%), Positives = 61/179 (34%), Gaps = 59/179 (32%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY+EL N+LA GL V + GD VA+ L ++ A+ K GA
Sbjct: 5 TYAELAERVNRLAAGL----LALGV----RPGDR-VALMLDNCPEFLRAWFALNKLGAVA 55
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+P++ + + HIL+ + L++
Sbjct: 56 VPINTALRGEELAHILDHSGARLIVV---------------------------------- 81
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER 236
D A +LYTSG+TG PKGV L H +L P +
Sbjct: 82 ----------------DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDV 124
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 52.6 bits (127), Expect = 1e-07
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 45/162 (27%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY EL+ A+++LA L V GD +VA L + V LA + GA
Sbjct: 3 TYGELDDAADRLAAALAE----LGVRP----GD-VVAFQLPNWWEFVVVYLACARIGAVI 53
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
P+ E+ + IL +AR ++ +E ++G ++P
Sbjct: 54 NPIVPIYRERELGFILRQARARVLFVPDE-------FRGFDYAAMP-------------- 92
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
+D+A++LYTSG+TG PKGV H +L
Sbjct: 93 ---------------DDVALLLYTSGTTGEPKGVMHTHNTLL 119
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 51.6 bits (124), Expect = 2e-07
Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 54/158 (34%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY+EL ++LA L K V + GD VA+ + S + A+ +AGA
Sbjct: 3 TYAELLELVDRLAG----LLQEKGV----RKGDR-VALYMQNSPQFVIAYYAILRAGAVV 53
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+P++ E ++HILN++ ++I
Sbjct: 54 VPVNPMNREAELEHILNDSGARVLIV---------------------------------- 79
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
+ +D+A++ YTSG+TG+PKG H
Sbjct: 80 -----------GSELDDVAVIPYTSGTTGLPKGCMHTH 106
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 51.0 bits (123), Expect = 3e-07
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 42/188 (22%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY +L++AS +LA + L V GD VAV + S + + LA +AGA +
Sbjct: 30 TYGDLDAASARLA----NLLVALGVK----PGDR-VAVQVEKSPEALALYLATLRAGAVF 80
Query: 118 LPLDV--TAPEQRVKHILNEARPLLVIA--ENEQACENLAYK--GRTVL--------SLP 163
LPL+ T E + + + +A P LV+ N +A V SL
Sbjct: 81 LPLNTAYTLAE--LDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLL 138
Query: 164 QLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL-NRL 222
+ +A +P ++D+A +LYTSG+TG KG L H +L N L
Sbjct: 139 E-AAAAAPDDFETVP-----------RGADDLAAILYTSGTTGRSKGAMLSHGNLLSNAL 186
Query: 223 A----WQW 226
W++
Sbjct: 187 TLVDYWRF 194
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 50.8 bits (122), Expect = 3e-07
Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 69/250 (27%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY EL+ +N+ A L GD V + L S L+ LA KAGA
Sbjct: 12 TYRELHDLANRFANVLRALG--------VSPGDR-VLLLLPDSPELVAAFLACLKAGAVA 62
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+ L+ Q ++HIL+++ L++ E +
Sbjct: 63 VALNPLLTPQDLEHILDDSGAALLVTEAD------------------------------- 91
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH---EVILNRLAWQWATFPYSPS 234
DIA LYTSG+TG PKGV H + + A+ P
Sbjct: 92 ----------------DIAYWLYTSGTTGKPKGV--MHRHRDPLTFAEAFARELLGLQPG 133
Query: 235 ERV-GAFKTALTFVDAVSEIWGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLV 292
+R+ + K + S + PL G +++P T P+ ++ L +++ L
Sbjct: 134 DRIFSSSKLFFAYGLGNS-LLFPL---FSGASAVLLPGWPT--PEAVLDLLARHRPTVLF 187
Query: 293 LVPSLLRSML 302
VP+L R++L
Sbjct: 188 GVPALYRALL 197
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 50.7 bits (122), Expect = 4e-07
Identities = 73/298 (24%), Positives = 112/298 (37%), Gaps = 62/298 (20%)
Query: 27 RIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNEN 86
+ A +PD ALI E TL TY+EL+ SN LARGLL V
Sbjct: 53 GLVAHAARRAPDRAALIDER---GTL-----TYAELDEQSNALARGLL----ALGV---- 96
Query: 87 QDGDHIVAVSLAPSS-GLIQVLLAVWKAGAAYLPLDV-TAPEQRVKHILNEARPLLVIAE 144
+ GD VAV LA + G + L A K GA + L+ + Q + E LV +
Sbjct: 97 RAGD-GVAV-LARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDD 154
Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDI--------- 195
E L +LR + + G + D+ S+
Sbjct: 155 -----EFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPPKPG 209
Query: 196 AIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF-VDAVSEIW 254
IV+ TSG+TG PKG P P + + + + F + +
Sbjct: 210 GIVILTSGTTGTPKGAPRPE--------------PSPLAP-LAGLLSRVPFRAGETTLLP 254
Query: 255 GPL----------LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
P+ L+ G +++ R +P+ + + K+K LV+VP +L +L
Sbjct: 255 APMFHATGWAHLTLAMALGSTVVLRRRF--DPEATLEDIAKHKATALVVVPVMLSRIL 310
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 50.2 bits (120), Expect = 7e-07
Identities = 55/222 (24%), Positives = 85/222 (38%), Gaps = 47/222 (21%)
Query: 29 FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
F+ A PD AL+ Q T+ +L A ++LARGLL
Sbjct: 24 FDATVARFPDREALVVRHQAL------RYTWRQLADAVDRLARGLLALGVQP-------- 69
Query: 89 GDHI-VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVI-AENE 146
GD + + L Q A + GA + ++ +++ L ++ VI A+
Sbjct: 70 GDRVGIWAPNCAEWLLTQ--FATARIGAILVNINPAYRASELEYALGQSGVRWVICADAF 127
Query: 147 QACE----------NLAYKGRTVLS---LPQLRLLSASLSHNNIPG-----------ESM 182
+ + LA L+ LP+LR + SL+ PG E++
Sbjct: 128 KTSDYHAMLQELLPGLAEGQPGALACERLPELRGV-VSLAPAPPPGFLAWHELQARGETV 186
Query: 183 LHSDNNNEQS----NDIAIVLYTSGSTGIPKGVRLPHEVILN 220
Q+ +D + YTSG+TG PKG L H ILN
Sbjct: 187 SREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILN 228
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 49.5 bits (119), Expect = 8e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHE-------VILNRLAWQWATFPYSPSERVGAFKTAL 244
+D+A ++YTSGSTG PKGV L H I L + +R+ A
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-------LTEDDRILAV-LPF 52
Query: 245 TFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
+F +S++ L + R GG L++ P ++ L K ++ VP+ +L
Sbjct: 53 SFDYGLSQL---LTAFRVGGTLVLESRFAF-PRDVLKHLAKERITGFAGVPTTWAQLL 106
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 50.0 bits (120), Expect = 8e-07
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
RT L LR+L+ + P ++ LH + +D A++L TSGSTG+PK V L H
Sbjct: 136 RTRAGLEALRVLAIEELRSAPP-DAPLH----PARPDDPALLLLTSGSTGVPKCVVLTHR 190
Query: 217 VILNRLA 223
IL R A
Sbjct: 191 NILARSA 197
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 49.9 bits (120), Expect = 8e-07
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 50/266 (18%)
Query: 58 TYSELNSASNQLARGL----LHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKA 113
TY EL + SN+LA GL L ++GD VA+ L + +V A ++
Sbjct: 13 TYGELEARSNRLAHGLRALGL------------REGDV-VAILLENNPEFFEVYWAARRS 59
Query: 114 GAAYLPLD--VTAPEQRVKHILN--EARPLLVIAENEQACENLAYKGRTVLSLPQLRLLS 169
G Y P++ +TA E + +I++ A+ L+V A LA +P L +++
Sbjct: 60 GLYYTPINWHLTAAE--IAYIVDDSGAKVLIVSAALADTAAELA--AELPAGVPLLLVVA 115
Query: 170 ASLSHNNIPGESMLHSDNNNEQSNDIAIV------LYTSGSTGIPKGVR--LPH---EVI 218
+PG + IA LY+SG+TG PKG++ LP +
Sbjct: 116 GP-----VPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEA 170
Query: 219 LNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII-PR-DVTRNP 276
+ Y + V A + A +G + + GG +++ + D
Sbjct: 171 PGMMLALLGFGMYGGPDSV-YLSPAPLYHTAPLR-FG-MSALALGGTVVVMEKFD----A 223
Query: 277 DQLIGTLEKYKVERLVLVPSLLRSML 302
++ + +E+Y+V LVP++ ML
Sbjct: 224 EEALALIERYRVTHSQLVPTMFVRML 249
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 49.8 bits (119), Expect = 1e-06
Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 25/201 (12%)
Query: 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
E+ L + + A PD L+F T TY+E A+ A H L
Sbjct: 20 ERTLPAMLARQAERYPDRPLLVFGG--------TRWTYAEAARAAAAAA----HALAAAG 67
Query: 82 VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
V + GD VA+ + V L GA +P++ +++HIL + L+
Sbjct: 68 V----KRGDR-VALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLL 122
Query: 142 IAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLH-------SDNNNEQSND 194
+ E L L LP + LL A S + G S + Q D
Sbjct: 123 VVEAALL-AALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGD 181
Query: 195 IAIVLYTSGSTGIPKGVRLPH 215
A +LYTSG+TG KGV PH
Sbjct: 182 TAAILYTSGTTGPSKGVCCPH 202
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 49.4 bits (118), Expect = 1e-06
Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 32/274 (11%)
Query: 30 EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDG 89
++A + PD AL F T+ EL+ LA L + V G
Sbjct: 24 ARHALMQPDAPALRFLGNTT--------TWRELDDRVAALAGAL----SRRGV----GFG 67
Query: 90 DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLD--VTAPEQRVKHILNEARPLLVIAENEQ 147
D ++ + L + ++ +LA GA +P++ +T PE + ++++ +V+ E
Sbjct: 68 DRVLILMLNRTE-FVESVLAANMLGAIAVPVNFRLTPPE--IAFLVSDCGAHVVVTEA-- 122
Query: 148 ACENLAYKGRTVLSLPQLRLLSASLSHNNIPG-ESMLHSDNNNEQSNDI-----AIVLYT 201
A +A R ++ L +++ S +++ G E +L DI A+++YT
Sbjct: 123 ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYT 182
Query: 202 SGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR 261
SG+TG PKG L H + + T + VG L + + + LL
Sbjct: 183 SGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLL--- 239
Query: 262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
G +I +P QL+ LE KV + LVP
Sbjct: 240 LGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVP 273
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 49.2 bits (118), Expect = 1e-06
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 46/262 (17%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
+Y +L + LA L L K + A++L S + LA +AG
Sbjct: 4 SYQQLWQEVDLLAE-QLRALGVKRI-----------ALALDNSIDWVIADLACLQAGIVC 51
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+P+ Q+ +H+LN+A L+I+++ A SA +
Sbjct: 52 IPIPHFFSAQQTQHLLNDAGADLLISDDPDA-------------------ASALHTPFAT 92
Query: 178 PGE----SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSP 233
GE ++ S N E A + YTSGSTG PKGV L +
Sbjct: 93 LGEDLYIALRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILE 152
Query: 234 SERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR--------NPDQLIGTLEK 285
ER T ++ ++ ++ PLL G +I+ +P Q + L +
Sbjct: 153 PERHLCLLPLATLLENIAGVYAPLLM---GATVILVPLAELGLSGSSGLDPAQFVAALSR 209
Query: 286 YKVERLVLVPSLLRSMLMFLKM 307
++ L+LVP LL +++ ++
Sbjct: 210 WQPHSLILVPQLLMALVAAVEQ 231
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 48.6 bits (116), Expect = 2e-06
Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 33/245 (13%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
T+ +L+ + LA+ L KA + VA+ S ++ +L A GA
Sbjct: 1 TWQDLDCEAAHLAKAL------KAQGIRSGS---RVALVGQNSIEMVLLLHACLLLGAEI 51
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
L+ E + L + L++ + L K SL ++
Sbjct: 52 AMLNTRLTENERTNQLEDLDVQLLLTD-----SLLEEKDFQADSLDRIEAAGRY------ 100
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
E+ L + N +Q IA +++TSG+TG PK V ++ +
Sbjct: 101 --ETSLSASFNMDQ---IATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDN- 154
Query: 238 GAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSL 297
L + +S ++ L+ G L I QL+ + +V + LVP+
Sbjct: 155 WLLSLPLYHISGLSILFRWLIE---GATLRIVDKFN----QLLEMIANERVTHISLVPTQ 207
Query: 298 LRSML 302
L +L
Sbjct: 208 LNRLL 212
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 48.3 bits (116), Expect = 2e-06
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV--- 250
D A++ YTSG+TG PKG L H +LN + A R + V
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNN-GYSIA--------RRLGLTEGDRTLVPVPLF 53
Query: 251 --SEIWGPLLSAR-CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
+ +L++ G L++ +P + +E+ ++ L VP++ ++L
Sbjct: 54 HVFGLVLGVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIALL 106
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 48.4 bits (116), Expect = 3e-06
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 39/174 (22%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
+ S+L A+ +A + G VAV P+ + ++ AG
Sbjct: 27 SRSDLAGAATAVAERV--------------AGARRVAVLATPTLATVLAVVGALIAGVPV 72
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+P+ + +HIL ++ + L +P +RL + S
Sbjct: 73 VPVPPDSGVAERRHILADSGAQAWLGPAPDDPAGLP-------HVP-VRLHARSWHRYPE 124
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVI---LNRL--AWQW 226
P A+++YTSG+TG PKGV L I L+ L AWQW
Sbjct: 125 PDPD------------APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQW 166
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 48.3 bits (116), Expect = 3e-06
Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 63/237 (26%)
Query: 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
E+ + ++ ++ AA PD AL++ +Q TY E N + LA+G L
Sbjct: 15 EQTIGQLLDRTAARYPDREALVYRDQGL------RWTYREFNEEVDALAKG----LLALG 64
Query: 82 VPNENQDGDHI----------VAVSLAPSS-GLIQVLL-----------AVWKAGAAYLP 119
+ + GD + V A + G I V + A+ ++G L
Sbjct: 65 I----EKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKAL- 119
Query: 120 LDVTAPEQRVKH---ILNEARPLLVIAENEQ-ACENLAY----------KGRTVLSLPQL 165
+ A + +L E P L E Q L K +L+ +L
Sbjct: 120 --IAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDEL 177
Query: 166 RLLSASLSHNNIPG-ESMLHSDNN-NEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN 220
L ++ + ++ L D+ N Q YTSG+TG PKG L H ILN
Sbjct: 178 LALGRAVDDAELAARQATLDPDDPINIQ--------YTSGTTGFPKGATLTHRNILN 226
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 47.4 bits (113), Expect = 5e-06
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLA 223
D + NDIA+++YTSGSTG+PKGV + H I+ +A
Sbjct: 241 PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVA 280
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 46.8 bits (112), Expect = 7e-06
Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 59/158 (37%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
+Y+E N+ +N+ A H L V GD VA+ + + LA+ K GA
Sbjct: 5 SYAEFNAWANRYA----HALRALGVK----KGDV-VALLMENRPEYLLAWLALAKLGAVA 55
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
++ T + + H +N + VI
Sbjct: 56 ALINTTQRGEVLAHCINVSDARAVIV---------------------------------- 81
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
D A +YTSG+TG+PK + H
Sbjct: 82 ----------------DPAFYIYTSGTTGLPKAAIMSH 103
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 46.6 bits (111), Expect = 1e-05
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 30/210 (14%)
Query: 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLH 78
I + L ++++ A + TALIFE +Y ELN N+ A L + L
Sbjct: 3 IVGGQHLRQMWDDLADVYGHKTALIFESSGGVV---RRYSYLELNEEINRTA-NLFYSLG 58
Query: 79 TKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARP 138
+ GD VA+ L I + K GA +P++ + IL ++
Sbjct: 59 IRK-------GDK-VALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQA 110
Query: 139 LLVIAENE--QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQ----- 191
L++ + + + T L + L +L G + +Q
Sbjct: 111 SLLVTSAQFYPMYRQIQQEDAT--PLRHICLTRVALP--ADDG-VSSFTQLKAQQPATLC 165
Query: 192 ------SNDIAIVLYTSGSTGIPKGVRLPH 215
++D A +L+TSG+T PKGV + H
Sbjct: 166 YAPPLSTDDTAEILFTSGTTSRPKGVVITH 195
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 45.7 bits (109), Expect = 2e-05
Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 56/224 (25%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
L E +A PD TA++F + +Y EL + +LA G L V
Sbjct: 12 LFHNLEVSARRYPDKTAIVF----YGRAI----SYRELLEEAERLA-GYLQ--QECGV-- 58
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
+ GD V + + S + A+ +A A +P++ E+ + H + ++ + I
Sbjct: 59 --RKGDR-VLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVG 115
Query: 145 NEQACENLAYKGRTVL----------------------------SLPQLR-----LLSAS 171
+E A + G L L L +
Sbjct: 116 SELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEA 175
Query: 172 LSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
L+ P D D+A++ YTSG+TG+PKG H
Sbjct: 176 LAAGLAPPPHTAGPD-------DLAVLPYTSGTTGVPKGCMHTH 212
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 44.9 bits (106), Expect = 3e-05
Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 46/279 (16%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
A +PD AL++ +Q+ +Y+E + Q A G+LH GD +
Sbjct: 12 ARRTPDRAALVYRDQEI--------SYAEFHQRILQAA-GMLHARGIGQ-------GD-V 54
Query: 93 VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENL 152
VA+ + S+ +++ A GA +LP++ V +IL +A L++ + E +
Sbjct: 55 VALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDA-IV 113
Query: 153 AYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVR 212
A + ++ + S L+ + D+ ++YTSG+T PKGV
Sbjct: 114 ALETPKIVIDAAAQADSRRLAQGGLEIPPQAAV-----APTDLVRLMYTSGTTDRPKGVM 168
Query: 213 LPHEVILNRLAWQWATFPYSPSER---------VGAFKTALTFVDAVSEIWGPLLSARCG 263
+ + + + SER VGAF + ++ +W G
Sbjct: 169 HSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFD-----LPGIAVLW-------VG 216
Query: 264 GVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
G L I R+ +P+ ++ +E++++ + P +L +L
Sbjct: 217 GTLRIHREF--DPEAVLAAIERHRLTCAWMAPVMLSRVL 253
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 45.3 bits (108), Expect = 3e-05
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 188 NNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
N +D A++L+TSGS G PKGV L H +L A A +SP ++V
Sbjct: 788 CNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKV 837
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 44.8 bits (106), Expect = 3e-05
Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 40/277 (14%)
Query: 29 FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
++K+A+L P+ A+ ++ V+T + + E +L+ K N+
Sbjct: 7 YKKHASLQPNKIAIKENDR-----VLTYKDWFESVCKVAN-------WLNEKESKNKT-- 52
Query: 89 GDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQA 148
+A+ L +Q+ AG +PLD+ + +K L + +++ E +
Sbjct: 53 ----IAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKL 108
Query: 149 CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIP 208
+ +GR + R++ L N + N + +TSGSTG P
Sbjct: 109 NDLPDEEGRVIEIDEWKRMIEKYL--------PTYAPIENVQ--NAPFYMGFTSGSTGKP 158
Query: 209 KGVRLPHEVILNRLAWQWATFPYSPSERV---GAFKTALTFVDAVSEIWGPLLSARCGGV 265
K + L+ F + V G +L A+S ++ G
Sbjct: 159 KAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLY-------VGQT 211
Query: 266 LIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
+ + R P+Q++ LE + + VP++L S+
Sbjct: 212 VHLMR--KFIPNQVLDKLETENISVMYTVPTMLESLY 246
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 44.7 bits (106), Expect = 4e-05
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 46/194 (23%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAG--A 115
TY+E++ SNQ+AR LL K GD VA+ L + + L + K G
Sbjct: 5 TYAEVDKRSNQVARALLAHAGLKP-------GD-TVALLLGNEPAFLWIWLGLAKLGCPT 56
Query: 116 AYLPLDVTAPEQRVKHILN-----EARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSA 170
A+L ++ R +L+ AR L+ E +A E + LP LR +
Sbjct: 57 AFLNTNI-----RSGSLLHCFRCCGARVLVADPELLEAVEEI---------LPALRAMGV 102
Query: 171 S---LSHNNIP--------------GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRL 213
LSH + P E + S + A+ +YTSG+TG+PK R+
Sbjct: 103 RVFYLSHTSPPEGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARI 162
Query: 214 PHEVILNRLAWQWA 227
H +L
Sbjct: 163 SHLRVLQCSGMLSL 176
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 44.5 bits (106), Expect = 4e-05
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 76 FLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNE 135
++ + ++G++I + L S LA+ AG + L+ TA E+ ++ +
Sbjct: 18 LALSRLIKKLTKEGENI-GIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQ 76
Query: 136 A--------RPLLVIAENEQACENLAYKGRTVLSLPQLR-----------LLSASLSHNN 176
A R L + E + +G ++ L LR L+A L
Sbjct: 77 AGIKTVITSRAFLEKLKLEGL--VVLLEGVRIVYLEDLRAKISKADKLKAFLAAKLP--- 131
Query: 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER 236
++L + +D A++L+TSGS G+PKGV L H +L + A + +
Sbjct: 132 ---PALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDV 188
Query: 237 V 237
+
Sbjct: 189 L 189
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 44.1 bits (105), Expect = 5e-05
Identities = 71/306 (23%), Positives = 102/306 (33%), Gaps = 94/306 (30%)
Query: 38 DNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL 97
D AL + + + TY EL SN+ A + L V + GD +
Sbjct: 59 DKVALRYLDASRKEKY----TYKELKELSNKFA----NVLKELGV----EKGDRVF--IF 104
Query: 98 APSSGLIQV-LLAVWKAGAAYLPL----------D----------VTAPEQRVKHILNEA 136
P + LL K GA PL D +T P + ++
Sbjct: 105 MPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDL 164
Query: 137 ---RPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSN 193
+ +L++ E+ + L L + AS + +D
Sbjct: 165 PSLKHVLLVGEDVEEGPG-------TLDFNAL-MEQAS------DEFDIEWTD-----RE 205
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF------- 246
D AI+ YTSGSTG PKGV H +L + T K L
Sbjct: 206 DGAILHYTSGSTGKPKGVLHVHNAMLQ----HYQT-----------GKYVLDLHEDDVYW 250
Query: 247 -------VDAVSE-IWGPLLSARCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLVPSL 297
V S I+ P L G +I D R +P++ LE YKV P+
Sbjct: 251 CTADPGWVTGTSYGIFAPWL---NGATNVI--DGGRFSPERWYRILEDYKVTVWYTAPTA 305
Query: 298 LRSMLM 303
+R MLM
Sbjct: 306 IR-MLM 310
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 43.8 bits (104), Expect = 7e-05
Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 33/200 (16%)
Query: 29 FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
E+ A + PD TA++ D TY E +LA L +
Sbjct: 10 LERAAKVYPDRTAVV----YGDRRY----TYRETYDRCRRLASALS----KLGI----GK 53
Query: 89 GDHIVAVSLAP-SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQ 147
GD VAV LAP + +++ V AGA +PL+ + ILN + ++ + Q
Sbjct: 54 GDV-VAV-LAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVD--Q 109
Query: 148 ACENLAYKGRTVLSLPQLRLLSASLSHNN------IPGESMLHSDNNNE-----QSNDIA 196
+LA + +LS ++ + E +L + +
Sbjct: 110 EFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDP 169
Query: 197 IVL-YTSGSTGIPKGVRLPH 215
I L YTSG+TG PKGV H
Sbjct: 170 ISLNYTSGTTGNPKGVVYTH 189
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 43.8 bits (104), Expect = 8e-05
Identities = 54/202 (26%), Positives = 78/202 (38%), Gaps = 38/202 (18%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNE-TYSELNSASNQLARGLLHFLHTKAVPNENQDGDH 91
A+L PD+ A F + ++D + T+S+L + +A L GD
Sbjct: 11 ASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRH---------GSTGDR 61
Query: 92 IVAVSLAPSSGL--IQVLLAVWKAGAAYLPLDVTAP---EQRVKHILNEARPLLVIAENE 146
AV LAP GL I L +AG +PL V ++RV +L + P +V+ +
Sbjct: 62 --AVILAPQ-GLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSA 118
Query: 147 QACENLAYKGR-------TVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVL 199
+ Y V+ + L L S SD A +
Sbjct: 119 VVDDVTEYVAPQPGQSAPPVIEVDLLDLDSPR------------GSDARPRDLPSTAYLQ 166
Query: 200 YTSGSTGIPKGVRLPHE-VILN 220
YTSGST P GV + H VI N
Sbjct: 167 YTSGSTRTPAGVMVSHRNVIAN 188
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 43.1 bits (102), Expect = 1e-04
Identities = 72/311 (23%), Positives = 117/311 (37%), Gaps = 96/311 (30%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
A +PD A+I + V+T Y EL+ SN+LA H + + + GDH
Sbjct: 7 AQTTPDKPAVIMASTGE---VVT---YRELDERSNRLA----HLFRSLGL----KRGDH- 51
Query: 93 VAVSLAPSSGLIQVLLAVWKAGAAYLPLD--VTAPEQRVKHILN--EARPLL-------V 141
VA+ + + ++V A ++G Y ++ +T E +I++ AR L+ V
Sbjct: 52 VAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAE--AAYIVDDSGARALITSAAKLDV 109
Query: 142 IAENEQACENLAYKGRTVLSLP-------QLRLLSASLSHNNIPGESMLHSDNNNEQSND 194
+ C + + R VL A L I ES L +D
Sbjct: 110 ARALLKQCPGV--RHRLVLDGDGELEGFVGYAEAVAGLPATPIADES-LGTD-------- 158
Query: 195 IAIVLYTSGSTGIPKGVR--LPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSE 252
+LY+SG+TG PKG++ LP + T L +
Sbjct: 159 ---MLYSSGTTGRPKGIKRPLPEQPP----------------------DTPLPLTAFLQR 193
Query: 253 IWG-----------PLLSA----------RCGGVLIIPRDVTRNPDQLIGTLEKYKVERL 291
+WG PL + R GG +I+ + +Q + +E+Y V
Sbjct: 194 LWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME--HFDAEQYLALIEEYGVTHT 251
Query: 292 VLVPSLLRSML 302
LVP++ ML
Sbjct: 252 QLVPTMFSRML 262
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 42.3 bits (100), Expect = 2e-04
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 198 VLYTSGSTGIPKGVRLPHEVILNRLAWQ--WATFPYSPSERVGAFKTALTFVDAVSEIWG 255
+LYT G+TG+PKGV E I L +AT + E
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGA--GTRFLPAC 65
Query: 256 PL---------LSARCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLV 294
PL LSA G ++ + +PD++ T+EK++V LV+V
Sbjct: 66 PLMHGAGQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIV 114
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 41.6 bits (98), Expect = 3e-04
Identities = 51/268 (19%), Positives = 80/268 (29%), Gaps = 105/268 (39%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
T++EL S++ A FL V GD VAV L L V+L K GA +
Sbjct: 2 TFAELKEESDRAAN----FLKDLGV----GRGDR-VAVLLPRVPELWAVILGCIKLGAVF 52
Query: 118 LP----LDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLS 173
+P L R++ AR ++ A+
Sbjct: 53 IPGTTQLGPKDIRYRLER--AGARAIVTSAD----------------------------- 81
Query: 174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH------------------ 215
D A++ +TSG+TG+PK V H
Sbjct: 82 --------------------DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRP 121
Query: 216 -EVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR 274
++ WA +S ++ P L V R
Sbjct: 122 DDLHWTIADPGWAKGAWSS-------------------LFAPWLLGAAVFVYHGRR---F 159
Query: 275 NPDQLIGTLEKYKVERLVLVPSLLRSML 302
+ ++ + LE+Y V P+ R +L
Sbjct: 160 DAERTLELLERYGVTTFCAPPTAYRMLL 187
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 41.3 bits (97), Expect = 5e-04
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 60/248 (24%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY +L +N++A L+ L G+ ++ S A + L+ LAV KAGA
Sbjct: 62 TYQDLLDRANRIAHVLVEDLGVVP-------GNRVLLRS-ANTPMLVACWLAVLKAGAIV 113
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+ T P R K E + K R +L RL +
Sbjct: 114 V---TTMPLLRAK-------------ELTTIVD----KARITHALCDKRLTA-------- 145
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER- 236
++D+A++ +TSG+TG+PKG H IL + + P+
Sbjct: 146 --------------ADDVALIGFTSGTTGLPKGTMHFHRDILA-ICDAFPRHVLQPTPDD 190
Query: 237 --VGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLV 294
+G+ A TF ++ P L VL+ P L+ +++++ L
Sbjct: 191 VFIGSPPLAFTFGLGGLVLF-P-LRFGASAVLL----EQATPPLLLKAIQEHRATILFTA 244
Query: 295 PSLLRSML 302
P+ R+ML
Sbjct: 245 PTAYRAML 252
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 40.8 bits (96), Expect = 6e-04
Identities = 48/209 (22%), Positives = 73/209 (34%), Gaps = 54/209 (25%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
A P A+IF TY+EL+ S++ A LL A GD
Sbjct: 43 ARERPQRPAIIFYGHVI--------TYAELDELSDRFA-ALLRQRGVGA-------GDR- 85
Query: 93 VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN------E 146
VAV L V + K GA ++P+ E + + LN+A +++A + E
Sbjct: 86 VAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVE 145
Query: 147 QACENLAYKGRTVLS--------------LPQLRLLSASLSH----------NNIPGESM 182
Q + R V+ LP L + L+
Sbjct: 146 QVRAETSL--RHVIVTSLADVLPAEPTLPLPDS-LRAPRLAAAGAIDLLPALRACTAPVP 202
Query: 183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
L + +A + YT G+TG+PKG
Sbjct: 203 LPP----PALDALAALNYTGGTTGMPKGC 227
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 40.6 bits (95), Expect = 7e-04
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 35/191 (18%)
Query: 37 PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
+TALI D+ + +YSEL +A GL H + + GD +V +
Sbjct: 53 NGDTALI------DSSTGFSISYSELQPLVKSMAAGLYHVMGVRQ-------GD-VVLLL 98
Query: 97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
L S + LAV G ++ ++ +K + + L E + L+ G
Sbjct: 99 LPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEK-LSPLG 157
Query: 157 RTVLSLPQLRLLSASLSHNNIPGE-----SMLHSDNN-------NEQSNDIAIVLYTSGS 204
V+ +P+ + ++ E ++ D + + D+A ++Y+SG+
Sbjct: 158 VPVIGVPE------NYDFDSKRIEFPKFYELIKEDFDFVPKPVIKQD--DVAAIMYSSGT 209
Query: 205 TGIPKGVRLPH 215
TG KGV L H
Sbjct: 210 TGASKGVVLTH 220
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 40.6 bits (96), Expect = 7e-04
Identities = 36/156 (23%), Positives = 52/156 (33%), Gaps = 61/156 (39%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
T+ EL+ +QLA L V GD VA+ S + + LA+ + GA
Sbjct: 3 TFQELDQRVSQLAEQL----AALGVRR----GD-RVALLAKNSIEFLLLFLALLRLGAVV 53
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
LPL+ P++ E +Q +L P L
Sbjct: 54 LPLNPRLPQE----------------ELQQQLADLQ---------PDLD----------- 77
Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRL 213
A +++TSGSTG PK V
Sbjct: 78 ----------------RPATIIFTSGSTGKPKAVVH 97
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 40.3 bits (95), Expect = 8e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 189 NEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
+DIA + ++SGSTG PKGV L H+ +L
Sbjct: 102 LSLPDDIAFIQFSSGSTGEPKGVILTHKNLL 132
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 40.4 bits (95), Expect = 0.001
Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 193 NDIAIVLYTSGSTGIPKGVRLPHEVIL-NRL---AWQWATFPYSPSERVGAFKTALTFVD 248
+D+A + YT G+TG+ KG L H I+ N L AW F P F AL
Sbjct: 204 DDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYH 263
Query: 249 AVSEIWGPLLSARCGGVLII---PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
+ LL R GG I+ PRD+ I L+KY+V V +L ++L
Sbjct: 264 IFALTVCGLLGMRTGGRNILIPNPRDIP----GFIKELKKYQVHIFPAVNTLYNALL 316
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 40.4 bits (95), Expect = 0.001
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 25/118 (21%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI 253
DIA + YT G+TG PKGV H I Q A + + R T
Sbjct: 169 DIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRF----LMCT-------- 216
Query: 254 WGPLLSARCGGVLIIPR-------DVTR--NPDQLIGTLEKYKVERLVLVPSLLRSML 302
PL A GG +P V +P +++ +E+ ++ LVP+++ ++L
Sbjct: 217 --PLSHA--GGAFFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALL 270
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 40.1 bits (94), Expect = 0.001
Identities = 61/291 (20%), Positives = 107/291 (36%), Gaps = 57/291 (19%)
Query: 29 FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
F A PD LI + TL T+ EL+ S+ LA L +A+P
Sbjct: 49 FAIAAQRCPDRPGLI---DELGTL-----TWRELDERSDALAAAL------QALPIGEPR 94
Query: 89 GDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENE-- 146
+V + G ++ LLA + GA L L+ + + ++ VI + E
Sbjct: 95 ---VVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFS 151
Query: 147 ----QACENLAYKGRTV-LSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYT 201
+A + R V + L L + G+ + ++L T
Sbjct: 152 ATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHA-GQRPEPTGRKGR------VILLT 204
Query: 202 SGSTGIPKGVR-------LPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIW 254
SG+TG PKG R + IL+R W+ +E A F W
Sbjct: 205 SGTTGTPKGARRSGPGGIGTLKAILDRTPWR--------AEEP-TVIVAPMF-----HAW 250
Query: 255 G---PLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
G +L+A ++ R +P+ + +++++ L +VP + ++
Sbjct: 251 GFSQLVLAASLACTIVTRRRF--DPEATLDLIDRHRATGLAVVPVMFDRIM 299
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 40.1 bits (94), Expect = 0.001
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER 236
D+A + YTSG+TG PKGV L H ++ +A + + PS+
Sbjct: 222 DVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDV 264
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 40.3 bits (95), Expect = 0.001
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVIL 219
D A ++++SGS G PKGV L H IL
Sbjct: 783 DTATIIFSSGSEGEPKGVMLSHHNIL 808
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 39.8 bits (93), Expect = 0.001
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 36/184 (19%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
A L P A + D + TY+EL++ +LA L + DG+ +
Sbjct: 5 ARLQPQRLAAV------DLALGRRWTYAELDALVGRLAA----VLRRRGC----VDGERL 50
Query: 93 VAVSLAPSSGLIQVL-LAVWKAGAAYLPLD--VTAPEQRVKHILNEARPLLVIAENEQAC 149
LA +S + L A + GA Y+PL+ ++A E +L +A P L++ +
Sbjct: 51 A--VLARNSVWLVALHFACARVGAIYVPLNWRLSASELDA--LLQDAEPRLLLGD----- 101
Query: 150 ENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPK 209
+ +A V L ++++ + S+ ++++L+TSG++G PK
Sbjct: 102 DAVAAGRTDVEDLA--AFIASADALEPADTPSI--------PPERVSLILFTSGTSGQPK 151
Query: 210 GVRL 213
GV L
Sbjct: 152 GVML 155
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 39.5 bits (93), Expect = 0.001
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA-TFPYSPSERV 237
+D A++L+TSG+TG PKGV L H+ +L A A + +PS+R
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLL-ASARNIAKSHKLTPSDRC 46
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 39.8 bits (93), Expect = 0.001
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 185 SDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
S+ N + DI ++YTSG++G PKGV L HE
Sbjct: 212 SETNPPKPLDICTIMYTSGTSGDPKGVVLTHE 243
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 39.6 bits (93), Expect = 0.001
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 53 VITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWK 112
T++++ + ++A L GD I +S + I LA+W
Sbjct: 3 QWHEYTWAQVADQARRIAAALQSLGLEP--------GDRIAILS-KNCAEWIIADLAIWM 53
Query: 113 AGAAYLPLDVTAPEQRVKHILN--EARPLLVIA-ENEQACENLAYKGRTVLSLPQLRLLS 169
AG +PL T + ++++L +A+ L V ++ A + +G + L L
Sbjct: 54 AGHVSVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLK 113
Query: 170 ASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
+++ + + D+A ++YTSG+TG PKGV L
Sbjct: 114 DHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFG 160
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 39.6 bits (93), Expect = 0.002
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 93 VAVSLAPSSGLIQVLL-AVWKAGAAYLPLDVTAP--------EQRVKHI-LNEARPLLVI 142
VAV LA + I +W GA+ L P E ++ I + A+ ++V
Sbjct: 57 VAV-LAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVG 115
Query: 143 AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTS 202
A L KG VL++ L A+ P + + ++ D+A++ TS
Sbjct: 116 EPFLAAAPVLEEKGIRVLTVADLL---AAD-----PIDPVETGED------DLALMQLTS 161
Query: 203 GSTGIPKGVRLPHE 216
GSTG PK V++ H
Sbjct: 162 GSTGSPKAVQITHG 175
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 39.6 bits (93), Expect = 0.002
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPH 215
D+A++LYTSG+TG PKG +L H
Sbjct: 220 DVALILYTSGTTGKPKGAQLTH 241
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 39.7 bits (93), Expect = 0.002
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 39/125 (31%)
Query: 198 VLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFV----DAVSEI 253
++YTSG+TG PKGVR +P + A + + +
Sbjct: 157 MIYTSGTTGHPKGVR---------------RAAPTPEQAAAAEQMRALIYGLKPGIRALL 201
Query: 254 WGPL----------LSARCGGVLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
GPL + R GGVL++ PR +P++L+ +E++++ + +VP+
Sbjct: 202 TGPLYHSAPNAYGLRAGRLGGVLVLQPR---FDPEELLQLIERHRITHMHMVPT------ 252
Query: 303 MFLKM 307
MF+++
Sbjct: 253 MFIRL 257
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 39.5 bits (92), Expect = 0.002
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 22/197 (11%)
Query: 28 IFEKNAALSPDNTALIFEEQDKDTLVITNETYSEL-NSASNQLARGLLHFLHTKAVPNEN 86
+ E A P+ AL+ D + I+ + L + + QL R L +P +
Sbjct: 21 LVEVAATRLPEAPALVVTA---DRIAISYRDLARLVDDLAGQLTRSGL-------LPGD- 69
Query: 87 QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAP--EQRVKHILNEARPLLVIAE 144
VA+ + ++ + LLA +A +PLD P EQRV+ AR +L+ A+
Sbjct: 70 -----RVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDAD 124
Query: 145 --NEQACENLAYKGRTVLSLPQLRLLSASLS-HNNIPGESMLHSDNNNEQSNDIAIVLYT 201
+++A + TV +LS H + E + D A++++T
Sbjct: 125 GPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMIMFT 184
Query: 202 SGSTGIPKGVRLPHEVI 218
G+TG+PK V H I
Sbjct: 185 GGTTGLPKMVPWTHANI 201
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 39.3 bits (92), Expect = 0.002
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVI 218
+IP + L + +++ N ++YTSG+TG+PKGV L H+ I
Sbjct: 133 RSIP-DEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 39.3 bits (92), Expect = 0.002
Identities = 64/253 (25%), Positives = 91/253 (35%), Gaps = 67/253 (26%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
+Y EL S + A L K G+ V L S L L K GA Y
Sbjct: 2 SYQELKELSARFANVLASLGVGK--------GER-VFTLLPRSPELYVAALGTLKLGAVY 52
Query: 118 LPL-DVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNN 176
PL PE P+ E +A + +++ P+L +
Sbjct: 53 GPLFSAFGPE-----------PIRDRLELGEA--------KVLITTPEL--------YER 85
Query: 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYS---- 232
E D A++ +TSG+TG PKGV H + +AT Y
Sbjct: 86 TDPE-------------DPALLHFTSGTTGKPKGVLHVHRAV----VAHYATARYVLDLR 128
Query: 233 PSERVGAFKTA-LTFVDAVS-EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVER 290
P + + TA +V S I PLL G L++ + ++ G LE+ KV
Sbjct: 129 PDDVY--WCTADPGWVTGTSYGIIAPLL---NGVTLVVDEG-EFDAERWYGILEEEKVTV 182
Query: 291 LVLVPSLLRSMLM 303
P+ LR MLM
Sbjct: 183 WYTAPTALR-MLM 194
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 39.1 bits (92), Expect = 0.002
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 128 RVKHILNEARPLLVIAENEQACEN----LAYKGRTVLSL----PQLRLLSASLSHNNIPG 179
+++HI + P V AE+ A L G V+++ + A+L
Sbjct: 93 KLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPAIAFAALLATPPTA 152
Query: 180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
+ +A L+TSGSTG+PK V
Sbjct: 153 AVDAAFAAVGP--DTVAKYLFTSGSTGLPKAV 182
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 39.2 bits (92), Expect = 0.002
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 33/128 (25%)
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEV---ILNRLAWQWATFPYSPSER------VGAFKT 242
S D +LYTSGSTG PKGV H +L F + VG + T
Sbjct: 235 SEDPLFILYTSGSTGKPKGVL--HTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG-WIT 291
Query: 243 ALTFVDAVSEIWGPLLSARCG-------GVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
+++ ++GPL G G P +P + +EK+KV P
Sbjct: 292 GHSYI-----VYGPLA---NGATTVMFEGTPTYP-----DPGRFWEIIEKHKVTIFYTAP 338
Query: 296 SLLRSMLM 303
+ +R LM
Sbjct: 339 TAIR-ALM 345
Score = 28.8 bits (65), Expect = 3.9
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 30 EKNAALSPDNTALIFE-EQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
+++ PD A+I+E ++ + I TY EL+ + A L K
Sbjct: 64 DRHLEARPDKVAIIWEGDEPGEVRKI---TYRELHREVCRFANVLKSLGVKK-------- 112
Query: 89 GDHIVAVSLAPSSGLIQVLLAVWKAGA 115
GD VA+ + +LA + GA
Sbjct: 113 GD-RVAIYMPMIPEAAIAMLACARIGA 138
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 39.0 bits (91), Expect = 0.002
Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 35/258 (13%)
Query: 69 LARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQR 128
LA GLL ++GD +VA++ S ++ LLAV AG PL+ +
Sbjct: 45 LAAGLLRL--------GLRNGD-VVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEE 95
Query: 129 VKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRL------LSASLSH--NNIPGE 180
K + RP++++ ++ C + Y+ LP L S+S+ N+
Sbjct: 96 AKSAMLLVRPVMLVT--DETCSSW-YEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTT 152
Query: 181 SMLHSDNNNEQS-------NDIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFPYS 232
ML +D ++ +TSG+TG PKGV + H +I+ LA + A Y
Sbjct: 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLA-KIAIVGYG 211
Query: 233 PSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLV 292
+ V L + +S L+ C +++P+ + Q I +++ V ++
Sbjct: 212 -EDDVYLHTAPLCHIGGLSSALAMLMVGACH--VLLPKFDAKAALQAI---KQHNVTSMI 265
Query: 293 LVPSLLRSMLMFLKMTGT 310
VP+++ ++ + + T
Sbjct: 266 TVPAMMADLISLTRKSMT 283
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 38.8 bits (91), Expect = 0.003
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 23/123 (18%)
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRL--AWQWATF-PYSPSERVGA----FKTAL 244
+D+A +T G+TG PK R H N + AW A P + + F
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSH---RNEVANAWMAALLSGLGPGDVLLNGLPLFHVGG 57
Query: 245 TFVDAVSEIWGPLLSARCGGVLIIPRDV-TRNPDQLIGTL----EKYKVERLVLVPSLLR 299
V ++ PL G +++P RNP ++ E+Y+V L VP++L
Sbjct: 58 AIVTGLA----PLAR---GATVVLPTPSGFRNP-AVVANFWKIVERYRVTLLSAVPTVLA 109
Query: 300 SML 302
++L
Sbjct: 110 ALL 112
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 38.6 bits (90), Expect = 0.003
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 35/209 (16%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
L RI E + + D T + +++ T++ + + + LA H LH +
Sbjct: 12 LTRILEYGSTVHGDTTVTTWGGAEQEQT-----TFAAIGARAAALA----HALHDEL--- 59
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
GD V + + ++VL AV GA + PL+ ++ HI+N A +++A+
Sbjct: 60 -GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVAD 118
Query: 145 NEQACENLAYKGRTVLSLPQLRLL------SASLSHNNIPG-------ESML-----HSD 186
A E L G + P +R + A + ++P E++L D
Sbjct: 119 PRLA-EQL---GEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYD 174
Query: 187 NNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
A + Y++G+TG PKGV H
Sbjct: 175 WPELDETTAAAICYSTGTTGAPKGVVYSH 203
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 38.2 bits (89), Expect = 0.004
Identities = 47/209 (22%), Positives = 76/209 (36%), Gaps = 33/209 (15%)
Query: 15 ALEKIYKE------KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQ 68
L + Y+E K L I AA PD A+I + +Y EL+ ++
Sbjct: 9 ELAERYREKGYWQDKPLTDILRDQAARYPDAIAIICGNR--------QWSYRELDQRADN 60
Query: 69 LARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQR 128
LA GL TK + GD V V L + V A+ K G A P+ ++
Sbjct: 61 LAAGL-----TKL---GIKQGDTAV-VQLPNIAEFYIVFFALLKLGVA--PVLALFSHRK 109
Query: 129 --VKHILNEARPLLVIAENEQAC-ENLAYKGRTVLSLPQLR---LLSASLSHNNIPGESM 182
+ ++ P L I + + + + + LP LR + +
Sbjct: 110 SELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEAELFLWLES 169
Query: 183 LHSDNN--NEQSNDIAIVLYTSGSTGIPK 209
+S+++A + GSTG PK
Sbjct: 170 PAEPVKFPPTKSDEVAFFQLSGGSTGTPK 198
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 38.5 bits (90), Expect = 0.004
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 35/128 (27%)
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPH-EVILNRLAWQWATFPYSPSERVGAFK--TALTFVD 248
D+A + YT G+TG+ KG L H ++ N + A Y P G TAL
Sbjct: 205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAA---YGPLLHPGKELVVTAL---- 257
Query: 249 AVSEIWGPL-----LSARC------GG--VLII-PRDVTRNPDQLIGTLEKYKVERLVLV 294
PL L+ C GG +LI PRD+ + L+KY + V
Sbjct: 258 -------PLYHIFALTVNCLLFIELGGQNLLITNPRDI----PGFVKELKKYPFTAITGV 306
Query: 295 PSLLRSML 302
+L ++L
Sbjct: 307 NTLFNALL 314
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 37.9 bits (88), Expect = 0.005
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNR 221
A V YTSG+TG+PKG +P +R
Sbjct: 153 QPAFVFYTSGTTGLPKGAVIPQRAAESR 180
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 37.8 bits (88), Expect = 0.005
Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 39/213 (18%)
Query: 15 ALEKIYKEK------QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQ 68
+ Y+EK L I +AA PD A+I E+ +Y+EL+ +++
Sbjct: 14 EFARRYREKGYWQDRTLTDILTDHAARYPDRIAVIDGER--------RLSYAELDQRADR 65
Query: 69 LARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTA-PEQ 127
LA G L + + GD ++ V L + A+ + G A V A P
Sbjct: 66 LAAG----LRRLGI----KPGDTVL-VQLPNVAEFYITFFALLRLGVA----PVLALPSH 112
Query: 128 R---VKHILNEARPLLVIAENEQACENLAYKGRTVLS-LPQLR--LLSASLSHNNIPGES 181
R + ++ L+I + + + R +++ P LR +++ H ++ +
Sbjct: 113 RASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAA 172
Query: 182 MLHSDNN-----NEQSNDIAIVLYTSGSTGIPK 209
+ H + ++A + G+TG PK
Sbjct: 173 LCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPK 205
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 38.0 bits (88), Expect = 0.005
Identities = 43/207 (20%), Positives = 82/207 (39%), Gaps = 25/207 (12%)
Query: 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLH 78
+++++ ++ F+ A PD AL + +Y EL+ +++A GL
Sbjct: 18 LWRDRTINDHFDAAVANCPDKPALTAYRDGHGAVR--RFSYRELDCRVDRIAVGL----- 70
Query: 79 TKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARP 138
+ D +V+ L + LA + GA PL E+ + +LN A
Sbjct: 71 -ARLGVGRGD---VVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADS 126
Query: 139 -LLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQS----- 192
+ V+ + ++ A LP LR + + + +L + ++
Sbjct: 127 KVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAI 186
Query: 193 --------NDIAIVLYTSGSTGIPKGV 211
+D+ ++YTSG+TG PKGV
Sbjct: 187 LAGPRPSPDDVTQLIYTSGTTGEPKGV 213
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 37.9 bits (89), Expect = 0.006
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 192 SNDIAIVLYTSGSTGIPKGV 211
+ D +LYTSGSTG PKGV
Sbjct: 224 AEDPLFILYTSGSTGKPKGV 243
Score = 29.8 bits (68), Expect = 1.9
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
A + A+I+E + D TY EL + A L K GD
Sbjct: 57 KAGRGNKVAIIWEGEPGDESRTI--TYRELYREVCRFANVLKSLGVKK--------GD-R 105
Query: 93 VAVSLAPSSGLIQVLLAVWKAGA 115
VA+ + L +LA + GA
Sbjct: 106 VAIYMPMIPELPIAMLACARIGA 128
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 37.7 bits (88), Expect = 0.006
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 195 IAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSE 235
+A L+TSGSTG+PK V ++ +A Q P P
Sbjct: 222 VAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDP 262
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 37.8 bits (88), Expect = 0.006
Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 57/155 (36%)
Query: 58 TYSELNSASNQLARGLLHFLH-TKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAA 116
TYSE + A H+LH + V Q GD VA+ S+ + + LA+W GA
Sbjct: 7 TYSETYDLVLRYA----HWLHGDRNV----QSGD-FVAIDTTNSAEFVFLWLALWSIGAV 57
Query: 117 YLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNN 176
++ + H L + VI + +
Sbjct: 58 PAFINYNLSGDPLIHCLKISGAKFVIVDPD------------------------------ 87
Query: 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
D A ++YTSG+TG+PKG
Sbjct: 88 -----------------DPAALIYTSGTTGLPKGC 105
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 37.6 bits (88), Expect = 0.006
Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 52/162 (32%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TYSEL N+LA GL K GD V + + + LLA+ K GA
Sbjct: 9 TYSELAREVNRLASGLAALGLGK--------GD-RVGIYMPMIPEAVVALLAIAKIGAIA 59
Query: 118 LPL----DVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLS 173
+P+ A R++ EA+ L+ + +G+ V
Sbjct: 60 VPIFSGFGPDAVATRLQ--DAEAKVLI-------TADGFLRRGKRV-------------- 96
Query: 174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
+ +D A+++YTSG+TG PKG H
Sbjct: 97 -------DLK---------DDPAMIIYTSGTTGKPKGTVHTH 122
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 37.8 bits (88), Expect = 0.006
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
+Q D A++L+TSGS G PKGV H+ +L
Sbjct: 362 QQPEDAALILFTSGSEGHPKGVVHSHKSLL 391
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 37.5 bits (87), Expect = 0.007
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 189 NEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
+Q DI ++YTSG+TG PKGV L + I+
Sbjct: 216 PKQKTDICTIMYTSGTTGEPKGVILTNRAII 246
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 37.6 bits (88), Expect = 0.008
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 192 SNDIAIVLYTSGSTGIPKGV 211
SN+ + +LYTSG+TG PKGV
Sbjct: 232 SNEPSYILYTSGTTGKPKGV 251
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 37.3 bits (87), Expect = 0.008
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 179 GESML--HSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
G S H N E ++D+A+++YTSG+TG PKGV
Sbjct: 248 GHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGV 282
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 37.0 bits (87), Expect = 0.010
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 198 VLYTSGSTGIPKGV 211
+LYTSGSTG PKGV
Sbjct: 250 ILYTSGSTGKPKGV 263
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 37.1 bits (86), Expect = 0.011
Identities = 38/167 (22%), Positives = 57/167 (34%), Gaps = 24/167 (14%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
+Y EL + +L L V E + V + + L +AG
Sbjct: 32 SYGELEAQVRRLG----AALRRLGVKREER-----VLLLMLDGVDFPIAFLGAIRAGIVP 82
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+ L+ ++L ++R +V E L + P L
Sbjct: 83 VALNTLLTADDYAYMLEDSRARVVFVSGEL----LPVIKAALGKSPHLEHRVVV--GRPE 136
Query: 178 PGESMLHSDNNNE---------QSNDIAIVLYTSGSTGIPKGVRLPH 215
GE L E Q++D A LY+SGSTG+PKGV H
Sbjct: 137 AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTH 183
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 36.6 bits (85), Expect = 0.013
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 18/67 (26%)
Query: 152 LAYKGRTVLSLP-----QLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTG 206
LA + +L +P + LL +L GE + +D+A+V+ TSG+TG
Sbjct: 2 LAGRAPALLPVPAQDERRAALLRDALR----VGEPI---------DDDVALVVATSGTTG 48
Query: 207 IPKGVRL 213
PKG L
Sbjct: 49 TPKGAML 55
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 36.8 bits (85), Expect = 0.014
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 22/122 (18%)
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHE----VILNRLAWQWATFPYSPSERVG-----AFKT 242
+ D +LYTSGSTG PKGV H ++ +++A F Y P++ + T
Sbjct: 274 AEDPLFLLYTSGSTGKPKGVL--HTTGGYMVYTATTFKYA-FDYKPTDVYWCTADCGWIT 330
Query: 243 ALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPD--QLIGTLEKYKVERLVLVPSLLRS 300
++V +GP+L+ G +++ PD + ++KYKV P+L+RS
Sbjct: 331 GHSYV-----TYGPMLN---GATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRS 382
Query: 301 ML 302
++
Sbjct: 383 LM 384
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 36.3 bits (84), Expect = 0.016
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 177 IPGESMLHSDNNNEQ-SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP-YSPS 234
IP E ++ +++ D+A++L+TSG+ +PKGV L H N LA Q A +SP
Sbjct: 166 IPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHA---NLLANQRACLKFFSPK 222
Query: 235 E 235
E
Sbjct: 223 E 223
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 36.3 bits (84), Expect = 0.017
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 57/197 (28%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY EL S A L HT P GD I AV L ++Q +AV+ A A
Sbjct: 51 TYGELYKLSGAFAAWLQQ--HTDLKP-----GDRI-AVQLP---NVLQYPVAVFGAMRAG 99
Query: 118 LPLDVTAP---EQRVKHILNE--ARPLLVIAENEQACENLAYKGRTVLS----------- 161
L + T P + ++H N+ A+ L+ +A N+A+ VL
Sbjct: 100 LIVVNTNPLYTAREMEHQFNDSGAKALVCLA-------NMAHLAEKVLPKTGVKHVIVTE 152
Query: 162 ----LPQLR--LLSASLSH-------NNIPGESMLH----------SDNNNEQSNDIAIV 198
LP L+ L++A + H ++P + N Q++D+A++
Sbjct: 153 VADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVL 212
Query: 199 LYTSGSTGIPKGVRLPH 215
YT G+TG+ KG L H
Sbjct: 213 QYTGGTTGVAKGAMLTH 229
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 36.2 bits (83), Expect = 0.018
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 193 NDIAIVLYTSGSTGIPKGVRLPHEVILNR--LAWQW 226
ND+A++ YT G+TG PKGV L H+ +++ + QW
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQW 241
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 36.2 bits (84), Expect = 0.020
Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 30/209 (14%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
L + A PD AL++ ++ + T+ E+++ + LA L K
Sbjct: 9 LAHFLRQAARRFPDRIALVWGDR--------SWTWREIDARVDALAAALAARGVRK---- 56
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVI-- 142
GD I+ S + + + + A ++ GA ++P + V ++ + +I
Sbjct: 57 ----GDRILVHS-RNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICH 111
Query: 143 ---AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHS-DNNNEQSNDIAIV 198
E+ A + V+++ R A L + + + N +D
Sbjct: 112 ADFPEHAAAVRAASPDLTHVVAIGGAR---AGLDYEALVARHLGARVANAAVDHDDPCWF 168
Query: 199 LYTSGSTGIPKGVRLPHE----VILNRLA 223
+TSG+TG PK L H VI N LA
Sbjct: 169 FFTSGTTGRPKAAVLTHGQMAFVITNHLA 197
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 36.2 bits (83), Expect = 0.022
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLA 223
++ +DI ++YTSG+TG PKGV + +E I+ +A
Sbjct: 220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIA 253
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 35.9 bits (83), Expect = 0.023
Identities = 49/246 (19%), Positives = 84/246 (34%), Gaps = 59/246 (23%)
Query: 87 QDGDHIVAVSL--APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
Q GD VAV L P L+ V A + G ++P + + + + L ++ ++
Sbjct: 65 QRGDR-VAVILPRVPEWWLVNV--ACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVTS 121
Query: 145 NEQA---------CENLAYKGRTVLSLPQLR---------LLSASLSHNNIPGESMLHSD 186
+E A C +L K +L R L AS H +
Sbjct: 122 DELAPAVDSIASECPSLKTK---LLVSEHSRDGWLNFKELLKEASTEHTCV--------- 169
Query: 187 NNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF 246
+S + + +TSG+TG PK H + + G + LT
Sbjct: 170 --KTKSQEPMAIYFTSGTTGFPKMAEHSHSSLG---------LGLKVN---GRYWLDLTP 215
Query: 247 VDA---------VSEIWGPLLSARCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLVPS 296
D + L S G + + R +P ++ TL KY + P+
Sbjct: 216 SDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPT 275
Query: 297 LLRSML 302
+ R ++
Sbjct: 276 VYRMLV 281
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 35.8 bits (83), Expect = 0.028
Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 27/198 (13%)
Query: 29 FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
+ A PD TA+ T TY EL + +++A GL L
Sbjct: 30 LDACVASCPDKTAVT--AVRLGTGAPRRFTYRELAALVDRVAVGLAR-LGVGR------- 79
Query: 89 GDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQA 148
GD +V+ L + LA + GA PL E+ + +L A +++
Sbjct: 80 GD-VVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFR 138
Query: 149 CENLAYKGRTVL-SLPQLRLLSASLSHNNIPGESMLHSDNNNEQS--------------N 193
+ A R + LP LR + E++L EQ +
Sbjct: 139 GFDHAAMARRLRPELPALRHVVVVGGDGADSFEALL-ITPAWEQEPDAPAILARLRPGPD 197
Query: 194 DIAIVLYTSGSTGIPKGV 211
D+ ++YTSG+TG PKGV
Sbjct: 198 DVTQLIYTSGTTGEPKGV 215
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 35.6 bits (83), Expect = 0.031
Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 38/132 (28%)
Query: 105 QVLLAVWKAGAAYLPLD-----VTAPEQRVKHILNEARPLLVIAENE-------QACE-- 150
+ LA AG Y P+ V+ +++H+L P LV A++ A
Sbjct: 109 LLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPA 168
Query: 151 -------NLAYKGRTVLSLPQL----RLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVL 199
A GR L + +H + + IA L
Sbjct: 169 DVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPD-------------TIAKFL 215
Query: 200 YTSGSTGIPKGV 211
+TSGSTG+PK V
Sbjct: 216 FTSGSTGLPKAV 227
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 35.5 bits (82), Expect = 0.033
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 188 NNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLA 223
NE + I ++YTSG++G PKGV L ++ + N +
Sbjct: 299 QNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVV 334
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 35.0 bits (81), Expect = 0.045
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 192 SNDIAIVLYTSGSTGIPKGV 211
S D +LYTSG+TG PKGV
Sbjct: 219 STDPLYILYTSGTTGKPKGV 238
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 35.1 bits (81), Expect = 0.050
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 21/138 (15%)
Query: 87 QDGDHIVAVSLAPSSGLIQV--LLAVWKAGAAYLPLDVTAPE-----QRVKHILNEARP- 138
GD VA+ LAP G+ V A KAG +PL APE +R+ L +A P
Sbjct: 90 GPGDR-VAI-LAPQ-GIDYVAGFFAAIKAGTIAVPL--FAPELPGHAERLDTALRDAEPT 144
Query: 139 -LLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAI 197
+L +A E + +LP+LR ++ + IP + ++D++
Sbjct: 145 VVLTTTAAAEAVEGF------LRNLPRLRR-PRVIAIDAIPDSAGESFVPVELDTDDVSH 197
Query: 198 VLYTSGSTGIPKGVRLPH 215
+ YTSGST P GV + H
Sbjct: 198 LQYTSGSTRPPVGVEITH 215
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 34.3 bits (79), Expect = 0.067
Identities = 49/274 (17%), Positives = 93/274 (33%), Gaps = 99/274 (36%)
Query: 57 ETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAA 116
+Y++L+ SN++A +FL V + GD ++ + L L + +LA K GA
Sbjct: 1 YSYAQLSKRSNRVA----NFLRKHGV----RRGDRVL-LMLPNVPELWEAMLAAIKLGAV 51
Query: 117 YLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNN 176
+P ++ + +P ++A+ +A
Sbjct: 52 VIPATTLLTPADLRDRFSRGKPKAIVADETRA---------------------------- 83
Query: 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPK--------------------GVRLPHE 216
+D ++ +TSG+TG+PK G++ P +
Sbjct: 84 ----------------DDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQ-PGD 126
Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR-N 275
+ LN + WA A S + P + V I + R +
Sbjct: 127 IHLNISSPGWAKH-------------------AWSSFFAPWNAGAT--VFGI--NYPRFD 163
Query: 276 PDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG 309
+ +G LEK+ V P++ R M + +
Sbjct: 164 ARRYLGALEKFGVTTFCAPPTVWR-MFIQQDLAQ 196
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 34.7 bits (80), Expect = 0.067
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 193 NDIAIVLYTSGSTGIPKGVRLPHE 216
+ IA + YTSGST IP GV++ H
Sbjct: 180 DTIAYLQYTSGSTRIPAGVQITHL 203
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 34.6 bits (79), Expect = 0.068
Identities = 45/218 (20%), Positives = 83/218 (38%), Gaps = 31/218 (14%)
Query: 107 LLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLR 166
+LA K GA + D P ++ P + + + + S+P +
Sbjct: 83 VLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALV-APGSKMASSAVPEALHSIPVIA 141
Query: 167 L-LSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEV------IL 219
+ ++A + ++ + N ++ S D +++TSG+TG PK V L + IL
Sbjct: 142 VDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDIL 201
Query: 220 NRLAWQWATF-----PYSP--SERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDV 272
+ W T+ YSP + +G +W L GG+ + +
Sbjct: 202 QKEGLNWVTWVVGETTYSPLPATHIGG-------------LWWILTCLMHGGLCVTGGEN 248
Query: 273 TRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGT 310
T + ++ L V LVP+LL ++ LK
Sbjct: 249 TTSLLEI---LTTNAVATTCLVPTLLSKLVSELKSANA 283
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 34.3 bits (79), Expect = 0.072
Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 31/283 (10%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
A PD ALI+ + D + + T + +L SN+ A +F + GD
Sbjct: 27 ADEEPDKLALIWCDDDGEEKIFT---FGDLKDYSNKAA----NFFKALGI----GKGDT- 74
Query: 93 VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEA--RPLLVIAEN----- 145
V ++L +LA+ K GA +P + + + + A + ++ I E+
Sbjct: 75 VMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEH 134
Query: 146 -EQACENLAYKGRTVLSLPQLRLLSASLSH--NNIPGESMLHSDNNNEQSNDIAIVLYTS 202
++A VL + N + + N+ ++DI +V +TS
Sbjct: 135 IDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTS 194
Query: 203 GSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDA--VSEIWGPLLSA 260
G+TG+PK V H L + T Y + + G LT D +WG L
Sbjct: 195 GTTGMPKMVEHDHTYPLGHI----VTAKYWQNVKEGGLH--LTVADTGWGKAVWGKLYGQ 248
Query: 261 RCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLVPSLLRSML 302
G + D + +P L+ +EKY V P++ R ++
Sbjct: 249 WIAGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLI 291
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 34.5 bits (79), Expect = 0.079
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRL--AWQWAT 228
+ +DIA + YT G+TG+ KG L H ++ + A QW
Sbjct: 206 EPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLA 245
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 34.1 bits (79), Expect = 0.085
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 193 NDIAIVLYTSGSTGIPKGV 211
N A + YTSG+TG PKGV
Sbjct: 162 NTAAGLCYTSGTTGNPKGV 180
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 34.1 bits (78), Expect = 0.089
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 191 QSNDIAIVLYTSGSTGIPKGVRLP---HEVILNRLAWQWATFPYSPSERVGAFKTALTFV 247
+SN+ + +LYTSG+TG PKGV+ + V L WA F + + + V
Sbjct: 230 ESNEPSYILYTSGTTGKPKGVQRDVGGYAVAL--ALSMWAIFGIRAGQVMFSASDVGWVV 287
Query: 248 DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLI--GTLEKYKVERLVLVPSLLR 299
++ PLL+ G ++ + NPD + +E+Y V + P+ +R
Sbjct: 288 GHSYIVYAPLLA---GAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIR 338
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 34.2 bits (78), Expect = 0.092
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 193 NDIAIVLYTSGSTGIPKGVRLPH 215
+D+A++ YT G+TG+PKG L H
Sbjct: 192 DDVALLQYTGGTTGLPKGAMLTH 214
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 33.8 bits (78), Expect = 0.098
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 181 SMLHSDNNNE------QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ 225
S L + NE +D+ + Y+SG+TG+PKGV L H+ ++ +A Q
Sbjct: 161 SELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ 211
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 33.8 bits (77), Expect = 0.11
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 196 AIVLYTSGSTGIPKGVR--LPHEVILNR----LAWQWATFPYSPSERVGAFKTALTFVDA 249
A++LY+SG+TG PKG++ LP + +A A + S S+ + ++ A
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESD---IYYSSAPIYHA 207
Query: 250 VSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
W ++ A G V++ R + +G +E+Y++ +VP++ +L
Sbjct: 208 APLRWCSMVHALGGTVVLAKR---FDAQATLGHVERYRITVTQMVPTMFVRLL 257
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 33.5 bits (76), Expect = 0.16
Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 46/236 (19%)
Query: 97 LAPSS-GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK 155
LAP++ + ++ AV AGA P++ + IL A+P ++ +
Sbjct: 70 LAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRS-----FEPL 124
Query: 156 GRTVLSL-------PQLRLL------------SASLSHNNI-----PGESMLHSDNNNEQ 191
R VL L L ++ S L + + P S++ +
Sbjct: 125 AREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQD 184
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHE-VILNRLA----WQWATFPYSPSERVGAFKTALTF 246
+D + YTSG+T PKGV + H L+ L+ W+ T P V + +
Sbjct: 185 EHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCP------VYLWTLPMFH 238
Query: 247 VDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
+ + WG +AR GG + R VT ++ +E + V + VP++ +L
Sbjct: 239 CNGWTFTWG--TAAR-GGTSVCMRHVT--APEIYKNIEMHNVTHMCCVPTVFNILL 289
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 32.2 bits (74), Expect = 0.40
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 196 AIVL-YTSGSTGIPKGVRLPHE-----VILNRLAWQ 225
AI L YTSG+TG PKGV H + N LAW
Sbjct: 184 AIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWG 219
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 31.7 bits (72), Expect = 0.50
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 193 NDIAIVLYTSGSTGIPKGVRLPH 215
+DIA++ YT G+TG+ KG L H
Sbjct: 207 DDIAVLQYTGGTTGLAKGAMLTH 229
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 31.5 bits (72), Expect = 0.52
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFV------ 247
D ++++TSG+TG PK VR H + + +ER G + + +V
Sbjct: 151 DPFMLIFTSGTTGAPKAVRCSHGRLA-FAG-------RALTERFGLTRDDVCYVSMPLFH 202
Query: 248 -DAVSEIWGPLLSARCGGVLIIPR 270
+AV W P +++ G + +P
Sbjct: 203 SNAVMAGWAPAVAS--GAAVALPA 224
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 31.6 bits (72), Expect = 0.60
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 191 QSNDIAIVLYTSGSTGIPKGVRLPHEVI 218
+D+ ++++TSG++G PK VR H +
Sbjct: 150 DPDDLFMLIFTSGTSGDPKAVRCTHRKV 177
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 31.1 bits (70), Expect = 0.72
Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 24/173 (13%)
Query: 58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
TY E+ + + A+ L K +V V L + V L + AG +
Sbjct: 57 TYGEVVRDTRRFAKALRSLGLRKG---------QVVVVVLPNVAEYGIVALGIMAAGGVF 107
Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
+ TA E +K A L++ + Y L LP + L + +
Sbjct: 108 SGANPTALESEIKKQAEAAGAKLIVTND------TNYGKVKGLGLPVIVLGEEKIE-GAV 160
Query: 178 PGESMLH--------SDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRL 222
+ +L SDN D+ + ++SG+TGI KGV L H ++ L
Sbjct: 161 NWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANL 213
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 30.7 bits (70), Expect = 0.97
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)
Query: 191 QSNDIAIVLYTSGSTGIPKGV-RLPHEVIL--NRLAWQWATFPYSPSERVGAFKTALTFV 247
+I + +SG+TG P ++ LA + ++V F
Sbjct: 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFT 147
Query: 248 DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLR 299
+ + R G +IP N ++ + ++ +K + PS L
Sbjct: 148 GG---LGLHYGAERIGAT-VIPIS-GGNTERQLELMKDFKPTVIAATPSYLL 194
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 30.7 bits (70), Expect = 1.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 193 NDIAIVLYTSGSTGIPKGVRLPHEVILNRLA 223
+DIA + Y+SGST P+GV + H ++ L
Sbjct: 176 DDIAYLQYSSGSTRFPRGVIITHRALMANLR 206
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 30.6 bits (69), Expect = 1.2
Identities = 53/252 (21%), Positives = 83/252 (32%), Gaps = 33/252 (13%)
Query: 53 VITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWK 112
+ TY +L S + ++A LL L K GD +V V I
Sbjct: 6 PLYTLTYGKLWSRAAKIAYALLKKLGIKP-------GDRVVLV-YPDPEDFIAAFYGCLY 57
Query: 113 AGAAYLP---LDVTAPEQRVKHILNEARPLLVIA--ENEQACENLAYKGRTVLSL----- 162
AG +P A Q+V +L + +A +AC T L
Sbjct: 58 AGLIPVPVEPPLSRAGSQQVGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKFKGW 117
Query: 163 PQLRLLSASLSHNNIP-GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNR 221
P+L + P + H N D A + Y + G GV + H+ +L
Sbjct: 118 PRLVWFVTEIKTLKKPIKDWNPHLPPANL---DTAYIEYKTSKEGSVMGVTVTHQALLTH 174
Query: 222 LAWQWATFPYSPSERVGAFKTALTFVDAVSEI--WGPLLSARCGG---VLIIPRDVTRNP 276
Y+ T + +D + W L++ G +LI P + NP
Sbjct: 175 CQALKQACQYTEGR------TIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNP 228
Query: 277 DQLIGTLEKYKV 288
+ KYK+
Sbjct: 229 LLWFQIISKYKI 240
>gnl|CDD|239591 cd03514, CrtR_beta-carotene-hydroxylase, Beta-carotene hydroxylase
(CrtR), the carotenoid zeaxanthin biosynthetic enzyme
catalyzes the addition of hydroxyl groups to the
beta-ionone rings of beta-carotene to form zeaxanthin
and is found in bacteria and red algae. Carotenoids are
important natural pigments; zeaxanthin and lutein are
the only dietary carotenoids that accumulate in the
macular region of the retina and lens. It is proposed
that these carotenoids protect ocular tissues against
photooxidative damage. CrtR does not show overall amino
acid sequence similarity to the beta-carotene
hydroxylases similar to CrtZ, an astaxanthin
biosynthetic beta-carotene hydroxylase. However, CrtR
does show sequence similarity to the green alga,
Haematococcus pluvialis, beta-carotene ketolase (CrtW),
which converts beta-carotene to canthaxanthin. Sequences
of the CrtR_beta-carotene-hydroxylase domain family, as
well as, the CrtW_beta-carotene-ketolase domain family
appear to be structurally related to membrane fatty acid
desaturases and alkane hydroxylases. They all share in
common extensive hydrophobic regions that would be
capable of spanning the membrane bilayer at least twice.
Comparison of these sequences also reveals three regions
of conserved histidine cluster motifs that contain eight
histidine residues: HXXXH, HXXHH, and HXXHH. These
histidine residues are reported to be catalytically
essential and proposed to be the ligands for the iron
atoms contained within homologs, stearoyl CoA desaturase
and alkane hydroxylase.
Length = 207
Score = 30.0 bits (68), Expect = 1.3
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 75 HFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAA 116
H H + +D DH + L S I +L+ G
Sbjct: 79 HMQHHAHTNDPEKDPDHFLLEWLVARSLFITLLVIAILFGFL 120
>gnl|CDD|150854 pfam10245, MRP-S22, Mitochondrial 28S ribosomal protein S22. This
is the conserved N-terminus and central portion of the
mitochondrial small subunit 28S ribosomal protein S22.
Mammalian mitochondria carry out the synthesis of 13
polypeptides that are essential for oxidative
phosphorylation and, hence, for the synthesis of the
majority of the ATP used by eukaryotic organisms. The
number of proteins produced by prokaryotes is smaller,
reflected in the lower number of ribosomal proteins
present in them.
Length = 243
Score = 30.1 bits (68), Expect = 1.3
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 9 LKGRDTALEKIYKEKQLHRIFEKNA-ALSPDNTALIFEEQDKDTLVITNETYSELN-SAS 66
L+GR +++++ L ++ E+ D + FE + + ++ Y +N S
Sbjct: 133 LEGRKVFPPPMFEDENLKKLLEQGKYEFVLDRACVQFEPDEPEYHRLSARVYEHINESGK 192
Query: 67 NQLARGLLHF 76
R HF
Sbjct: 193 FDKLRSTRHF 202
>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope
biogenesis, outer membrane].
Length = 281
Score = 30.0 bits (68), Expect = 1.6
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 103 LIQVLLAVWKAGAAYLP-LDVTAPEQRVKHILNEARPLLVI----------AENEQACEN 151
L + L ++ A LD+T P+ V ++ E RP +VI AE+E
Sbjct: 16 LRRALPGEFEVIATDRAELDITDPDA-VLEVIRETRPDVVINAAAYTAVDKAESEPE--- 71
Query: 152 LAYK 155
LA+
Sbjct: 72 LAFA 75
>gnl|CDD|222028 pfam13289, SIR2_2, SIR2-like domain. This family of proteins are
related to the sirtuins.
Length = 139
Score = 28.8 bits (65), Expect = 1.9
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 13 DTALEKIYKEKQLHRIF---EKNAALSPDNTALIFE----EQDKDTLVITNETYSELNSA 65
D LE +E+ I + A LI++ D D++V+T + Y EL S
Sbjct: 9 DDLLEDALEEEGKPIIVVSDDLALANLESGRPLIYKLHGDIDDPDSIVLTEDDYLELLSD 68
Query: 66 SNQLARGLLHFLHTKAV 82
L R L L T+ +
Sbjct: 69 EEPLPRFLRSLLSTRTL 85
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 30.0 bits (68), Expect = 1.9
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 16/65 (24%)
Query: 15 ALEKIYKEK------QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQ 68
+ Y+EK L I ++AA D A+I E+ +Y ELN AS+
Sbjct: 11 EFARRYREKGYWQDLPLTDILTRHAA--SDAIAVICGER--------QFSYRELNQASDN 60
Query: 69 LARGL 73
LA L
Sbjct: 61 LACSL 65
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 29.7 bits (67), Expect = 2.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVG 238
S A++ T+GSTG P+ L +L+ L A + VG
Sbjct: 151 SGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVG 197
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 29.7 bits (67), Expect = 2.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 193 NDIAIVLYTSGSTGIPKGVRLPH 215
N A + YTSG+TG PKGV H
Sbjct: 177 NTAAGMCYTSGTTGDPKGVLYSH 199
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 29.7 bits (67), Expect = 2.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
D +YTSG+TG+PK + H A + F P + V
Sbjct: 105 DKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVV 148
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 29.5 bits (67), Expect = 2.4
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 192 SNDIAIVLYTSGSTGIPKGVRLPH--EVILNRLAWQWATFPYSPSERVGAFKTALTFVDA 249
+D+A +T G+TG+PK + H EV AW A L V+A
Sbjct: 212 PDDVAAYFHTGGTTGMPKLAQHTHGNEVA---NAWLGALLLGLGPGDTVFCGLPLFHVNA 268
Query: 250 V-SEIWGPLLSARCGGVLIIP-----RD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSM 301
+ PL G +++ R V N +++ E+Y++ L VP++ ++
Sbjct: 269 LLVTGLAPLAR---GAHVVLATPQGYRGPGVIANFWKIV---ERYRINFLSGVPTVYAAL 322
Query: 302 L 302
L
Sbjct: 323 L 323
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 29.6 bits (66), Expect = 2.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 197 IVLYTSGSTGIPKGV 211
IVL TSG+TG PKGV
Sbjct: 178 IVLLTSGTTGKPKGV 192
>gnl|CDD|237850 PRK14888, PRK14888, KEOPS complex Pcc1-like subunit; Provisional.
Length = 59
Score = 26.8 bits (60), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 33 AALSPDNTALIFEEQDKDTLVITNET 58
AL PDN ++ E D DT+V T E+
Sbjct: 3 KALEPDNLDIMETEVDGDTVVYTIES 28
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 29.4 bits (67), Expect = 2.9
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 198 VLYTSGSTGIPKG 210
+LY+SG+TG+PK
Sbjct: 268 ILYSSGTTGLPKC 280
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 29.1 bits (66), Expect = 3.3
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 198 VLYTSGSTGIPKG 210
+LY+SG+TG+PK
Sbjct: 241 ILYSSGTTGLPKC 253
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 28.8 bits (65), Expect = 3.6
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 53 VITNETYSELNSASNQLA--RGLLHFLHTKAVPNENQDGDHIV--AVSLAPSSGLIQ--- 105
V NE + QL RG+ L + P +D D + AV++A GL++
Sbjct: 404 VTRNEQ------TARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGD 457
Query: 106 --VLLAVWKAGAAY 117
V++ W G+
Sbjct: 458 LVVVVQGWPVGSGS 471
>gnl|CDD|226028 COG3497, COG3497, Phage tail sheath protein FI [General function
prediction only].
Length = 394
Score = 28.5 bits (64), Expect = 4.7
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 105 QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQA 148
LL A P + AP + A L+ IAE +A
Sbjct: 116 YALLPAESVRAGVRPRILAAPGLDTQVAAPVATTLIGIAEKLRA 159
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 28.7 bits (64), Expect = 4.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 200 YTSGSTGIPKGVRLPH 215
YTSG+T PKGV L H
Sbjct: 202 YTSGTTASPKGVVLHH 217
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 28.1 bits (63), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 200 YTSGSTGIPKGVRLPH 215
YTSG+TG PKG H
Sbjct: 183 YTSGTTGNPKGALYSH 198
>gnl|CDD|220995 pfam11138, DUF2911, Protein of unknown function (DUF2911). This
bacterial family of proteins has no known function.
Length = 145
Score = 26.8 bits (60), Expect = 8.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 216 EVILNRLAWQWATFPYSPSERVGAFK 241
VI N+ QW + Y S+ V
Sbjct: 80 TVIFNKDTNQWGAYTYDESKDVLRVT 105
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 27.5 bits (61), Expect = 9.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
CGG+ DV R Q++ TLE Y V+ +V +P
Sbjct: 61 CGGLCPGLNDVIR---QIVFTLEIYGVKNIVGIP 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,839,585
Number of extensions: 1517873
Number of successful extensions: 1711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1561
Number of HSP's successfully gapped: 220
Length of query: 311
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 214
Effective length of database: 6,635,264
Effective search space: 1419946496
Effective search space used: 1419946496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)