RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8308
(311 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 140 bits (354), Expect = 4e-38
Identities = 66/300 (22%), Positives = 116/300 (38%), Gaps = 40/300 (13%)
Query: 28 IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQ 87
+++ + D TA+I+E D + +Y EL+ + A LL K
Sbjct: 77 CLDRHLQENGDRTAIIWEGDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKK------- 127
Query: 88 DGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQ 147
GD VA+ + +LA + GA + + + V + ++ LVI +E
Sbjct: 128 -GDV-VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEG 185
Query: 148 A----------CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQ------ 191
+ A K V S+ + +L + S + L + E+
Sbjct: 186 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 245
Query: 192 -----SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA-TFPYSPSERVGAFKTALT 245
+ D +LYTSGSTG PKGV L A + F Y P + +
Sbjct: 246 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT-ADVG 304
Query: 246 FVDAVS-EIWGPLLSARCGGVLIIPRDVTR--NPDQLIGTLEKYKVERLVLVPSLLRSML 302
+V S ++GPL CG ++ V P ++ ++K++V L P+ +R+++
Sbjct: 305 WVTGHSYLLYGPLA---CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 361
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 126 bits (318), Expect = 3e-33
Identities = 57/298 (19%), Positives = 106/298 (35%), Gaps = 32/298 (10%)
Query: 26 HRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNE 85
+ +++A +P+ A+IFE + + TY EL Q+A+ L + + +
Sbjct: 62 YNCVDRHALKTPNKKAIIFEGDEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRK---- 115
Query: 86 NQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145
GD VAV + I LLA+ + GA + + ++ +N+ +VI +
Sbjct: 116 ---GDT-VAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTD 171
Query: 146 EQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNE--------------- 190
E + + ++ + + +
Sbjct: 172 ESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYY 231
Query: 191 -----QSNDIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFPYSPSERVGAFKTAL 244
S D +LYTSGSTG PKGV+ +L L TF +
Sbjct: 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIG 291
Query: 245 TFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
++GPLL C ++ N + ++++KV + + P+ LR +
Sbjct: 292 WITGHTYVVYGPLLYG-CATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLK 348
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 109 bits (272), Expect = 2e-27
Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 19/287 (6%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
L E+ AAL + + TY+E+ + +L GL
Sbjct: 13 LWDFLERAAALFGRKEVVSRLHTGEVHRT----TYAEVYQRARRLMGGLRALGVGV---- 64
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
GD VA ++ AV GA + + + +ILN A +++ +
Sbjct: 65 ----GDR-VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFD 119
Query: 145 NEQACENLAYKGRT-VLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSG 203
A +G + + A + +D + YT+G
Sbjct: 120 PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTG 179
Query: 204 STGIPKGVRLPHE-VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC 262
+TG+PKGV H ++L+ LA + V + V+A + L
Sbjct: 180 TTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL---- 235
Query: 263 GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG 309
G + +P L+ + V VP++ ++ +L+ TG
Sbjct: 236 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG 282
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 107 bits (267), Expect = 1e-26
Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 34/270 (12%)
Query: 21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTK 80
++K +H++FE+ + P+N A++ E + L TY ELN +NQLAR + K
Sbjct: 21 RDKTIHQLFEEQVSKRPNNVAIVCENE---QL-----TYHELNVKANQLARIFIEKGIGK 72
Query: 81 AVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLL 140
V + + S L +LAV KAG AY+P+D+ P++R+++IL++++ +
Sbjct: 73 --------DTL-VGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARM 123
Query: 141 VIAENEQA--CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIV 198
++ + N+ + G+ + + ++ ++P +S D+A V
Sbjct: 124 LLTQKHLVHLIHNIQFNGQVEIFEEDTIKI-REGTNLHVP-----------SKSTDLAYV 171
Query: 199 LYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLL 258
+YTSG+TG PKG L H+ I N + + + +R+G F + +F +V E++ LL
Sbjct: 172 IYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASI-SFDASVWEMFMALL 230
Query: 259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKV 288
+ + II +D + + + + ++
Sbjct: 231 T--GASLYIILKDTINDFVKFEQYINQKEI 258
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 100 bits (249), Expect = 3e-24
Identities = 46/274 (16%), Positives = 90/274 (32%), Gaps = 25/274 (9%)
Query: 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLH 78
+ + + AA D A+ +Y EL++ +++LA G
Sbjct: 21 CWAGETFGDLLRDRAAKYGDRIAITCGNT---HW-----SYRELDTRADRLAAGFQKLGI 72
Query: 79 TKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARP 138
+ D V V L +V+ A+++ GA + + + + A
Sbjct: 73 QQ--------KDR-VVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEA 123
Query: 139 LLVIAENEQACENLAYKGRTVLS-LPQLRLLSASLSHNNIPGESMLHSDNNNE---QSND 194
I + + + R V S LP L+ + + LH++ +S+D
Sbjct: 124 AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSD 183
Query: 195 IAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIW 254
+A + + GSTG+ K + H+ + L S A +
Sbjct: 184 VAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYP----LS 239
Query: 255 GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKV 288
P + + + +PD +E+ KV
Sbjct: 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKV 273
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 98.2 bits (243), Expect = 2e-23
Identities = 38/283 (13%), Positives = 85/283 (30%), Gaps = 19/283 (6%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
++ + + A +PD+ AL + T++EL + +A L
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRL------THAELRARVEAVAARLHADGLRP---- 53
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
VAV S+ ++ +LA+ + GA L+ + ++ +
Sbjct: 54 ----QQR-VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA 108
Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
+ + ++ + + L L P ++ + A + YTSG+
Sbjct: 109 VGRQVADAIFQSGSGARIIFLGDLVRDGE----PYSYGPPIEDPQREPAQPAFIFYTSGT 164
Query: 205 TGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGG 264
TG+PK +P +R+ + + A G
Sbjct: 165 TGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224
Query: 265 VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM 307
+++ + QL+ + + L +
Sbjct: 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS 267
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 94.6 bits (234), Expect = 3e-22
Identities = 51/289 (17%), Positives = 106/289 (36%), Gaps = 31/289 (10%)
Query: 25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
LH+ ++ A + P A + + TY+E S +LA + +
Sbjct: 23 LHKAMKRYALV-PGTIAFTDAHIEVNI------TYAEYFEMSVRLAEAMKRYGLNT---- 71
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
+ V S +L G A P + E+ + + +N ++P +V
Sbjct: 72 ----NHR-IVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 126
Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSD------------NNNEQS 192
+ + L + + + + + S + + + S + ++
Sbjct: 127 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 186
Query: 193 NDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSE 252
IA+++ +SGSTG+PKGV LPH R + + A + + F
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG- 245
Query: 253 IWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSM 301
++ L CG +++ + + +L+ YK++ +LVP+L
Sbjct: 246 MFTTLGYLICGFRVVLMYR--FEEELFLRSLQDYKIQSALLVPTLFSFF 292
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 73
Score = 25.5 bits (56), Expect = 2.5
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 120 LDVTAPEQRVKHILNEARPLLV 141
L++ E+ V+ +LNE RP L
Sbjct: 1 LELN--EENVEKVLNEIRPYLA 20
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 500
Score = 26.3 bits (58), Expect = 5.4
Identities = 34/160 (21%), Positives = 50/160 (31%), Gaps = 31/160 (19%)
Query: 85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGA------AYLPLDVTAPEQRVKHILNEARP 138
E +D + AP + QVL A W+ G A D TA IL ARP
Sbjct: 339 EMRDSEQPPDAMSAPEELVQQVLSAGWREGLNVSCENALPRYDPTAYNT----ILRNARP 394
Query: 139 LLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPG-----ESMLHSDNNNEQSN 193
+ + LRL + + N + M H++ +
Sbjct: 395 HGINQSGP--------PEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRM-HANLPRDPYV 445
Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSP 233
D L SG + E+IL + FP+
Sbjct: 446 DPMAPLPRSGP-------EISIEMILQAAQPKIQPFPFQE 478
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 26.4 bits (57), Expect = 5.5
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 5/93 (5%)
Query: 41 ALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS 100
A + E + LV+ + QLA AV D+ + P
Sbjct: 46 AKVIEALGRPALVLAPNKIL-----AAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPG 100
Query: 101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHIL 133
L A L T + ++
Sbjct: 101 KDLYIEKDASINPEIERLRHSTTRSLLTRRDVI 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,079,428
Number of extensions: 47439
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 11
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)