Query psy8310
Match_columns 598
No_of_seqs 4 out of 6
Neff 1.2
Searched_HMMs 29240
Date Sat Aug 17 00:30:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sfe_A ADA O6-methylguanine-DN 38.2 5.2 0.00018 35.9 -0.7 14 555-568 139-152 (180)
2 1wrj_A Methylated-DNA--protein 37.2 5 0.00017 35.4 -1.0 14 555-568 112-125 (156)
3 3gva_A Alkyltransferase-like p 35.9 6.2 0.00021 33.6 -0.5 14 555-568 48-61 (116)
4 3l00_A SNAP-TAG; protein TAG, 35.7 5.9 0.0002 35.9 -0.8 13 555-567 140-152 (182)
5 2kif_A O6-methylguanine-DNA me 34.1 6.5 0.00022 33.0 -0.7 14 555-568 46-59 (108)
6 1eh6_A O6-alkylguanine-DNA alk 32.0 7.4 0.00025 35.7 -0.8 14 555-568 137-150 (207)
7 2g7h_A Methylated-DNA--protein 31.8 6.4 0.00022 35.4 -1.2 14 555-568 120-133 (167)
8 1mgt_A MGMT, protein (O6-methy 31.8 6.9 0.00024 35.2 -1.0 14 555-568 133-146 (174)
9 3lcn_C MRNA transport factor G 8.9 1.5E+02 0.0053 20.9 1.7 12 508-519 12-23 (29)
10 1fyj_A Multifunctional aminoac 4.2 4.5E+02 0.015 19.3 2.1 23 503-525 1-23 (57)
No 1
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Probab=38.20 E-value=5.2 Score=35.89 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=11.7
Q ss_pred eecceEEeehhhhh
Q psy8310 555 VPVPAVVVCHRVKK 568 (598)
Q Consensus 555 vpvpavvvchrvkk 568 (598)
-|++.+|.||||-.
T Consensus 139 np~~~~iPcHRVv~ 152 (180)
T 1sfe_A 139 NKLAIVIPCHRVVR 152 (180)
T ss_dssp CCBBTTBCGGGEEC
T ss_pred CCCCcccCcceEEC
Confidence 47889999999953
No 2
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=37.16 E-value=5 Score=35.38 Aligned_cols=14 Identities=36% Similarity=0.562 Sum_probs=11.5
Q ss_pred eecceEEeehhhhh
Q psy8310 555 VPVPAVVVCHRVKK 568 (598)
Q Consensus 555 vpvpavvvchrvkk 568 (598)
-|++.+|.||||-.
T Consensus 112 np~~~~iPcHRVv~ 125 (156)
T 1wrj_A 112 NNVLLIIPCHRVIG 125 (156)
T ss_dssp CSBTTTSCGGGEEC
T ss_pred CCCCCccCCCeEEC
Confidence 38889999999943
No 3
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=35.94 E-value=6.2 Score=33.57 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=11.7
Q ss_pred eecceEEeehhhhh
Q psy8310 555 VPVPAVVVCHRVKK 568 (598)
Q Consensus 555 vpvpavvvchrvkk 568 (598)
-|++.+|.||||-.
T Consensus 48 Np~~i~IPCHRVV~ 61 (116)
T 3gva_A 48 LHPETHVPWHRVIN 61 (116)
T ss_dssp SCTTCSSCGGGBCC
T ss_pred CCCCcCCCceEEEC
Confidence 47889999999964
No 4
>3l00_A SNAP-TAG; protein TAG, protein engineering, benzylguanine, benzylated transferase; HET: BCS; 1.70A {Homo sapiens} PDB: 3kzy_A* 3kzz_A* 1yfh_A* 1t39_A* 1qnt_A 1t38_A*
Probab=35.67 E-value=5.9 Score=35.85 Aligned_cols=13 Identities=54% Similarity=1.091 Sum_probs=11.2
Q ss_pred eecceEEeehhhh
Q psy8310 555 VPVPAVVVCHRVK 567 (598)
Q Consensus 555 vpvpavvvchrvk 567 (598)
-|++.+|.||||-
T Consensus 140 Np~~i~iPCHRVv 152 (182)
T 3l00_A 140 NPVPILIPCHRVV 152 (182)
T ss_dssp CSSBTTBCGGGEE
T ss_pred CCCCCeeCceEEE
Confidence 4788999999995
No 5
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=34.09 E-value=6.5 Score=32.97 Aligned_cols=14 Identities=21% Similarity=0.263 Sum_probs=11.5
Q ss_pred eecceEEeehhhhh
Q psy8310 555 VPVPAVVVCHRVKK 568 (598)
Q Consensus 555 vpvpavvvchrvkk 568 (598)
-|++.+|.||||-.
T Consensus 46 Np~~~~iPcHRVv~ 59 (108)
T 2kif_A 46 LPEGSKLPWFRVIN 59 (108)
T ss_dssp SCTTCSSCCTTEEC
T ss_pred CCCCCCCCCceeEC
Confidence 37889999999854
No 6
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1eh7_A 1eh8_A*
Probab=31.95 E-value=7.4 Score=35.69 Aligned_cols=14 Identities=50% Similarity=0.947 Sum_probs=11.6
Q ss_pred eecceEEeehhhhh
Q psy8310 555 VPVPAVVVCHRVKK 568 (598)
Q Consensus 555 vpvpavvvchrvkk 568 (598)
-|++.+|.||||-.
T Consensus 137 Np~~~~iPCHRVv~ 150 (207)
T 1eh6_A 137 NPVPILIPCHRVVC 150 (207)
T ss_dssp CSSBTTBCGGGEEC
T ss_pred CCCCCcCCCCeEEC
Confidence 38889999999953
No 7
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=31.82 E-value=6.4 Score=35.41 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=11.5
Q ss_pred eecceEEeehhhhh
Q psy8310 555 VPVPAVVVCHRVKK 568 (598)
Q Consensus 555 vpvpavvvchrvkk 568 (598)
-|++.+|.||||-.
T Consensus 120 Np~~i~iPCHRVv~ 133 (167)
T 2g7h_A 120 NPLPLIIPCHRVVA 133 (167)
T ss_dssp CSCTTTSGGGGEEC
T ss_pred CCCCCccCceeEEC
Confidence 37888999999954
No 8
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=31.75 E-value=6.9 Score=35.15 Aligned_cols=14 Identities=57% Similarity=0.942 Sum_probs=11.4
Q ss_pred eecceEEeehhhhh
Q psy8310 555 VPVPAVVVCHRVKK 568 (598)
Q Consensus 555 vpvpavvvchrvkk 568 (598)
-|++.+|.||||-.
T Consensus 133 Np~~~~iPcHRVv~ 146 (174)
T 1mgt_A 133 NPYPIVVPCHRVVA 146 (174)
T ss_dssp CSCTTTSCGGGEEB
T ss_pred CCCCCcCCcCeEEC
Confidence 37888999999954
No 9
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=8.94 E-value=1.5e+02 Score=20.88 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=9.8
Q ss_pred HHhHHHHHHHHH
Q psy8310 508 QKKIQEQKILLR 519 (598)
Q Consensus 508 qkkiqeqkillr 519 (598)
.|||.||+.+|.
T Consensus 12 KKKIEEQr~i~~ 23 (29)
T 3lcn_C 12 KKKIEEQREILQ 23 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999988875
No 10
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=4.21 E-value=4.5e+02 Score=19.27 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=0.0
Q ss_pred hhhhhHHhHHHHHHHHHhhcccc
Q psy8310 503 NSLASQKKIQEQKILLRNLKKTK 525 (598)
Q Consensus 503 nslasqkkiqeqkillrnlkktk 525 (598)
+..+-+..|.+|.-++|.||..+
T Consensus 1 ~~~~l~~~v~~qG~~VR~LKa~k 23 (57)
T 1fyj_A 1 DSLVLYNRVAVQGDVVRELKAKK 23 (57)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHhhcC
Done!