Query psy8310
Match_columns 598
No_of_seqs 4 out of 6
Neff 1.2
Searched_HMMs 13730
Date Sat Aug 17 00:30:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8310.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8310hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sfea1 a.4.2.1 (A:93-176) Ada 42.6 1.8 0.00013 32.9 -0.7 15 554-568 45-59 (84)
2 d1mgta1 a.4.2.1 (A:89-169) O6- 41.8 1.7 0.00013 33.0 -1.0 12 556-567 46-57 (81)
3 d1qnta1 a.4.2.1 (A:92-176) O6- 38.4 2.3 0.00017 32.3 -0.8 13 556-568 47-59 (85)
4 d2bvya2 c.1.8.3 (A:5-370) Mann 7.8 1E+02 0.0074 27.5 2.8 18 527-546 156-173 (366)
5 d1d0gr3 g.24.1.1 (R:102-128) D 5.8 94 0.0068 20.0 1.0 7 108-114 3-9 (27)
6 d1fyja_ a.16.1.3 (A:) Multifun 5.5 1.5E+02 0.011 21.2 2.1 23 504-526 2-24 (57)
7 d1j93a_ c.1.22.1 (A:) Uroporph 4.3 80 0.0058 26.6 -0.1 22 515-540 3-25 (343)
8 d1nm3a1 c.47.1.1 (A:166-239) C 3.9 99 0.0072 20.6 0.1 24 549-572 4-27 (74)
9 d1jfra_ c.69.1.16 (A:) Lipase 3.7 1.4E+02 0.0099 23.4 0.8 11 556-566 51-61 (260)
10 d1l5ja3 c.83.1.1 (A:373-862) A 3.7 2.2E+02 0.016 25.9 2.3 27 513-539 13-42 (490)
No 1
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=42.59 E-value=1.8 Score=32.90 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=11.9
Q ss_pred eeecceEEeehhhhh
Q psy8310 554 RVPVPAVVVCHRVKK 568 (598)
Q Consensus 554 rvpvpavvvchrvkk 568 (598)
+-|.+.+|.||||-.
T Consensus 45 ~Np~~~~iPcHRVv~ 59 (84)
T d1sfea1 45 ANKLAIVIPCHRVVR 59 (84)
T ss_dssp TCCBBTTBCGGGEEC
T ss_pred cCCCCCcCCceeeec
Confidence 347888999999953
No 2
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=41.77 E-value=1.7 Score=33.04 Aligned_cols=12 Identities=67% Similarity=1.171 Sum_probs=10.7
Q ss_pred ecceEEeehhhh
Q psy8310 556 PVPAVVVCHRVK 567 (598)
Q Consensus 556 pvpavvvchrvk 567 (598)
|.|.+|.||||-
T Consensus 46 p~~~~IPcHRVv 57 (81)
T d1mgta1 46 PYPIVVPCHRVV 57 (81)
T ss_dssp SCTTTSCGGGEE
T ss_pred CCcccccceEEE
Confidence 788999999995
No 3
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.45 E-value=2.3 Score=32.33 Aligned_cols=13 Identities=54% Similarity=1.076 Sum_probs=10.9
Q ss_pred ecceEEeehhhhh
Q psy8310 556 PVPAVVVCHRVKK 568 (598)
Q Consensus 556 pvpavvvchrvkk 568 (598)
|.+.+|.||||-.
T Consensus 47 p~~~~iPcHRVv~ 59 (85)
T d1qnta1 47 PVPILIPCHRVVC 59 (85)
T ss_dssp SSBTTBCGGGEEC
T ss_pred CCCCCCcceeEec
Confidence 7888999999853
No 4
>d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]}
Probab=7.81 E-value=1e+02 Score=27.50 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=14.4
Q ss_pred eeeccccceeeeehhhhhcc
Q psy8310 527 RLVKKKVPVVMRQVHLQEMN 546 (598)
Q Consensus 527 rlvkkkvpvvmrqvhlqemn 546 (598)
++-..+|||+.|-.| |||
T Consensus 156 ~~~~~~VPVl~Rp~H--E~n 173 (366)
T d2bvya2 156 RDDGTLIPIVFRPWH--ENA 173 (366)
T ss_dssp CTTSCBCCEEEECST--TTT
T ss_pred hccCCCccEEEeech--hcC
Confidence 455678999999988 676
No 5
>d1d0gr3 g.24.1.1 (R:102-128) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.77 E-value=94 Score=19.95 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=5.4
Q ss_pred CCCCCCC
Q psy8310 108 SLKTPRE 114 (598)
Q Consensus 108 slGnPle 114 (598)
++|||++
T Consensus 3 ~tgcprg 9 (27)
T d1d0gr3 3 RTGCPRG 9 (27)
T ss_dssp CSSCCTT
T ss_pred ccCCCCc
Confidence 5788886
No 6
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.46 E-value=1.5e+02 Score=21.23 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=18.8
Q ss_pred hhhhHHhHHHHHHHHHhhcccce
Q psy8310 504 SLASQKKIQEQKILLRNLKKTKL 526 (598)
Q Consensus 504 slasqkkiqeqkillrnlkktkl 526 (598)
+++-..+|.+|.-+.|.||..|-
T Consensus 2 ~~~L~~~V~~QGd~VR~LK~~ka 24 (57)
T d1fyja_ 2 SLVLYNRVAVQGDVVRELKAKKA 24 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 56677889999999999987653
No 7
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}
Probab=4.35 E-value=80 Score=26.56 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=16.2
Q ss_pred HHHHHhhcccceeeeccccce-eeeeh
Q psy8310 515 KILLRNLKKTKLRLVKKKVPV-VMRQV 540 (598)
Q Consensus 515 killrnlkktklrlvkkkvpv-vmrqv 540 (598)
.|+|+-|+..+. ..+|| .|||.
T Consensus 3 ~~~l~al~g~~~----dr~PVw~mrqa 25 (343)
T d1j93a_ 3 PLLLDAVRGKEV----ERPPVWLMRQA 25 (343)
T ss_dssp CHHHHHHHTCCC----SSCCBCCSCCC
T ss_pred hHHHHHHcCCCC----CCCCEEEEecc
Confidence 478888877664 36898 68987
No 8
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=3.91 E-value=99 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=17.4
Q ss_pred ccCeeeeecceEEeehhhhhhccC
Q psy8310 549 EKNIVRVPVPAVVVCHRVKKMLDH 572 (598)
Q Consensus 549 eknivrvpvpavvvchrvkkmldh 572 (598)
+++|+-.--+---.|+|+|++|+.
T Consensus 4 ~~~I~iYs~~~C~~C~~ak~lL~~ 27 (74)
T d1nm3a1 4 QESISIFTKPGCPFCAKAKQLLHD 27 (74)
T ss_dssp CCCEEEEECSSCHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCHHHHHHHHHHHH
Confidence 345666666777789999999864
No 9
>d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]}
Probab=3.71 E-value=1.4e+02 Score=23.40 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=9.0
Q ss_pred ecceEEeehhh
Q psy8310 556 PVPAVVVCHRV 566 (598)
Q Consensus 556 pvpavvvchrv 566 (598)
+.|+||+||-.
T Consensus 51 ~~P~Vv~~HG~ 61 (260)
T d1jfra_ 51 TFGAVVISPGF 61 (260)
T ss_dssp CEEEEEEECCT
T ss_pred CccEEEEECCC
Confidence 46899999974
No 10
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.68 E-value=2.2e+02 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=14.0
Q ss_pred HHHHHHHhhcccce---eeeccccceeeee
Q psy8310 513 EQKILLRNLKKTKL---RLVKKKVPVVMRQ 539 (598)
Q Consensus 513 eqkillrnlkktkl---rlvkkkvpvvmrq 539 (598)
-||||-|..-+..+ .+|.-+|=.||-|
T Consensus 13 ~EKIl~~~~g~~~v~~G~~v~~~vD~v~~h 42 (490)
T d1l5ja3 13 AQKMVGRACGVKGIRPGAYCEPKMTSVGSQ 42 (490)
T ss_dssp HHHHHHHTTTSSCCCTTCEECCBCSEEEEC
T ss_pred HHHHHHHhhCCCCCCCcCEEEEeCCEEEEe
Confidence 35666666543322 2455556666554
Done!