RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8310
(598 letters)
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 35.8 bits (82), Expect = 0.077
Identities = 63/352 (17%), Positives = 109/352 (30%), Gaps = 14/352 (3%)
Query: 6 PNKTLKTSRETPDKTLKTPRETQDKTLKTSRETPDKTLKTPRETPDKTLKTPRETPDKTL 65
P K K PR Q T S + P+ ++ K+P+ P
Sbjct: 582 PKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQR 641
Query: 66 KTPRETPDKTIKTPRETPDKTLKTPRETP-------DKTLKTPRETPDRSLKTPRETPDK 118
+ E P+ P K+ K P + D + ++ E+ +
Sbjct: 642 PSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFES 701
Query: 119 IVLKPSVDKPFNIFQTPKDTPDKTANTPRDTPDKIVLKTKVEKSPSIVLTPRDTPEKTIK 178
I+ + + P F TP+ P K + I + TP +
Sbjct: 702 ILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFH 761
Query: 179 -TPRDTPDKIMLKTNAEKPPSIVQIPKDTPEKIVNTPRDTPDKTIKTPRETPDKTIKTPR 237
TP DTP +L ++ + P++ + P + K P + P K R
Sbjct: 762 ETPADTPLPDILAEEFKEED--IHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHR 819
Query: 238 ETPDETLKTTRET-PDKTLKTPRDTPDKIVLKPNVEKPLSIVQTPRDTPEK---IVNTPR 293
T E+ + K K+ + + ++ + E +V+
Sbjct: 820 LDGLALSTTDLESDAGRIAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDDG 879
Query: 294 DTPDKIVKTPRETPDKNLRTPRETPDKNLKTPRDTPDKIVLKPNVEKPPSIV 345
D P E K+ R P K K + + K KP+ PSI+
Sbjct: 880 TEADDEDTHPPEEKHKSEVRRRRPPKKPSKPKKPSKPKKPKKPDSAFIPSII 931
Score = 29.7 bits (66), Expect = 5.6
Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 13/232 (5%)
Query: 150 PDKIVLKTKVEKSPSIVLTPRDTPEKTIKTPRDTPDKIMLKTNAEKPPSIVQIPKDTPEK 209
P KI +K + P P+D PE+ K R + + + K P ++ IPK
Sbjct: 569 PSKIPTLSKKPEFPKDPKHPKD-PEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRP 627
Query: 210 IVNT-PRDTPDKTIKTPRETPD--KTIKTPR-----ETPDETLKTTRETPDKTLKTPRDT 261
P+ P + E P+ K IK+P+ + P + + D +
Sbjct: 628 ESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSK 687
Query: 262 PDKIVLKPNVEKPLSIVQTPRDTPEKIVNTPRDTPDKIVKTPR--ETPDKNLRTPRETPD 319
K + + + +T +TP TPR P K+ + P + +
Sbjct: 688 ETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDI 747
Query: 320 KNLKTPRDTPDKIVLKPNVEKPPSIVLTPRETPDKTIKTPRDTPDKTIKTPR 371
+ P + P P I+ + D +T PD+ +K P
Sbjct: 748 EFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAET--GEPDEAMKRPD 797
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 33.9 bits (78), Expect = 0.27
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 13/156 (8%)
Query: 384 ELIVNTPRDTPEKTLKTPRETPDKTLNTPRETPDKTLITPRKTPDRTLKTPRETPDRT-L 442
L T R T +T ETP ++ +E + K D L PR L
Sbjct: 105 GLAFGTERSTSGAVPETKDETPASAPSSIKE----QKSSELKKVDSQLPDPRALLKGEDL 160
Query: 443 KTPRETPDKTLKTPRETPDKSLKTPRETPDKISVKS-----NSEVSNGVKTPK--VSKKP 495
KT ET ++ K+ + K K ++ P+K ++ + +K P K
Sbjct: 161 KTV-ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKE 219
Query: 496 LVTKVEKNSLASQKKIQEQKILLRNLKKTKLRLVKK 531
K++K A ++KI+ K L+N KK + +
Sbjct: 220 EFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAE 255
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 33.3 bits (76), Expect = 0.39
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 388 NTPRDTPEKT--LKTPRETPDKTLNTPRETPDKTLITPRKTPDRTLKTPRETPDRTLKTP 445
NTP TP +TP +TP + ++TP K+ TP +TP + P
Sbjct: 265 NTPAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTP--------AMYSSDYQAP 316
Query: 446 RETPDKTLKTP-RETPDKSLKTPRETPDKISVKSNSEVSNGVKTPKVSKKPLVTKVEKNS 504
+ P T + RE L PD S S+S + K +V P + E
Sbjct: 317 KPEPIYTWEELLRERFPSDLFAISSLPDSDSEASDSGPTRKRKRRRVPPLPEYSSDEDED 376
Query: 505 LASQKKIQEQKILLR 519
+ + ++ +K R
Sbjct: 377 DSDEDEVDYEKERKR 391
Score = 30.6 bits (69), Expect = 2.4
Identities = 28/132 (21%), Positives = 42/132 (31%), Gaps = 13/132 (9%)
Query: 203 PKDTPEKIVN--TPRDTPDKTIKTPRETPDKTIKTPRETPDETLKTT---RETPDKTLKT 257
P TP + TP TP + I TP K+ +TP +TP + P T +
Sbjct: 267 PAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTPAMYSSDYQAPKPEPIYTWEE 326
Query: 258 PRDTP-----DKIVLKPNVEKPLSIVQTPRDTPEKIVN--TPRDTPDKIVKTPRETPDKN 310
I P+ + S R + V + + + + D
Sbjct: 327 LLRERFPSDLFAISSLPDSDSEASDSGPTRKRKRRRVPPLPEYSSDEDEDDSDEDEVDYE 386
Query: 311 L-RTPRETPDKN 321
R R DKN
Sbjct: 387 KERKRRREEDKN 398
Score = 30.6 bits (69), Expect = 2.8
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 41 KTLKTPRETPDKTLKTPRETPDKTLKTPRETPDKTIKTPRETPDKTLKTPRETP---DKT 97
KT+ + TP +T R +TP +TP + I TP K+ +TP +TP
Sbjct: 258 KTVWRQKNTPAQTPMPERS-----WQTPAQTPARRISTPMTEEIKSWQTPLQTPAMYSSD 312
Query: 98 LKTPRETPDRSLKTPRETPDKIVLKPSVDKP 128
+ P+ P + + L P
Sbjct: 313 YQAPKPEPIYTWEELLRERFPSDLFAISSLP 343
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 32.8 bits (74), Expect = 0.53
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 364 DKTIKTPRDTPDKIVLKPNIELIVNTPRDTPEKTLKTPRETPDKTLNTPRETPDKTLITP 423
D ++P TP ++ ++E ++ K + P DK + P T
Sbjct: 338 DDAARSPATTPVAVIRAAHVEHGLDKGEPRASKPAEKPAAATDKPPEKASDKPSPEK-TS 396
Query: 424 RKTPDRTLKTPRETPDRTLKTPRETPDKTLKTPRETPDKSLKTPRETPDK 473
KTPD++ + + K+ +K L + PD + + P ET D+
Sbjct: 397 EKTPDKSHEKQLD------KSSEPVAEKALDKTADKPDAAARLPAETADR 440
Score = 31.7 bits (71), Expect = 1.3
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 28 QDKTLKTSRETPDKTLKTPRETPDKTL--KTPRETPDKTLKTPRETPDKTIKTPRETPDK 85
+ + K + + T K P + DK KT +TPDK+ + + K+ +K
Sbjct: 365 EPRASKPAEKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLD------KSSEPVAEK 418
Query: 86 TLKTPRETPDKTLKTPRETPDR 107
L + PD + P ET DR
Sbjct: 419 ALDKTADKPDAAARLPAETADR 440
Score = 30.9 bits (69), Expect = 2.4
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 46 PRETP-DKTLKTPRETPDKTL--KTPRETPDKTIKTPRETPDKTLKTPRETPDKTLKTPR 102
P E P T K P + DK KT +TPDK+ + + K+ +K L
Sbjct: 371 PAEKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLD------KSSEPVAEKALDKTA 424
Query: 103 ETPDRSLKTPRETPDK 118
+ PD + + P ET D+
Sbjct: 425 DKPDAAARLPAETADR 440
Score = 29.4 bits (65), Expect = 5.7
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 22/125 (17%)
Query: 140 DKTANTPRDTPDKIVLKTKVEKSPSIVLTPRDTPEKTIKTPRDTPDKIMLKTNAEKPPSI 199
D A +P TP ++ VE D E P + P A P
Sbjct: 338 DDAARSPATTPVAVIRAAHVEHGL-------DKGEPRASKPAEKP------AAATDKPPE 384
Query: 200 VQIPKDTPEKIVNTPRDTPDKTIKTPRETPDKTIKTPRETPDETLKTTRETPDKTLKTPR 259
K +PEK T TPDK+ + + K+ ++ L T + PD + P
Sbjct: 385 KASDKPSPEK---TSEKTPDKSHEKQLD------KSSEPVAEKALDKTADKPDAAARLPA 435
Query: 260 DTPDK 264
+T D+
Sbjct: 436 ETADR 440
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 31.6 bits (71), Expect = 1.5
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 313 TPRETPDKNLKTPRDTPDKIVLKPNVEKPPSIVLTPRETPDKTIKTPRDTPDKTIKTPRD 372
TP + + T V+ P+ P + +P TP K + P + +P
Sbjct: 572 TPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPST 631
Query: 373 TPDKIVLKPNIELIVNTPRDTPEKTLK 399
TP + +T +PE ++K
Sbjct: 632 TPSSPESSIKVA---STETASPESSIK 655
Score = 30.8 bits (69), Expect = 2.1
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 17 PDKTLKTPRETQDKTLKTSRETPDKTLKTPRETPDKT-LKTPRETPDKTLKTPRETPDKT 75
P T TP + + T T+ P +P L +P TP K + P
Sbjct: 566 PGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASH 625
Query: 76 IKTPRETPDKTLKTPRETPDKTLKTPRETPDRSLK 110
+ +P TP + E+ K T +P+ S+K
Sbjct: 626 LGSPSTTP-----SSPESSIKVASTETASPESSIK 655
Score = 30.8 bits (69), Expect = 2.7
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 157 TKVEKSPSIVLTPRDTPEKT-IKTPRDTPDKIMLKTNAEKPPSIVQIPKDTPEKIVNTPR 215
T SPS V+ P +P + +P TP KI+ + + P S + P TP
Sbjct: 583 TFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTS-PPASHLGSPSTTPSSPE---- 637
Query: 216 DTPDKTIKTPRETPDKTIK 234
+ K T +P+ +IK
Sbjct: 638 -SSIKVASTETASPESSIK 655
Score = 30.4 bits (68), Expect = 3.3
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 257 TPRDTPDKIVLKPNVEKPLSIVQTPRDTPEKIVNTPRDTPDKIVKTPRETPDKNLRTPRE 316
T V+ P+ P + +P TP KIV+ P + +P TP + E
Sbjct: 583 TFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTP-----SSPE 637
Query: 317 TPDKNLKTPRDTPDKIVLKPNVEKPPSIV 345
+ K T +P+ + + E S+V
Sbjct: 638 SSIKVASTETASPESSIKVASTESSVSMV 666
Score = 29.3 bits (65), Expect = 6.4
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 283 DTPEKIVNTPRDTPDKIVKTPRETPDKNLRTPRETPDKNLKTPRDTPDKIVLKPNVEKPP 342
D+P +V P + +P TP K + P +L +P TP + E
Sbjct: 587 DSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPS------SPESSI 640
Query: 343 SIVLTPRETPDKTIK 357
+ T +P+ +IK
Sbjct: 641 KVASTETASPESSIK 655
Score = 29.3 bits (65), Expect = 6.9
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 2 SKGTPNKTLKTSRETPDKTLKTPRETQDKTLKTSRETPDKTLKTPRETPDKTLKTPRETP 61
S +P+ + S P L +P T K + S P L +P TP + E+
Sbjct: 585 SSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTP-----SSPESS 639
Query: 62 DKTLKTPRETPDKTIK 77
K T +P+ +IK
Sbjct: 640 IKVASTETASPESSIK 655
Score = 29.3 bits (65), Expect = 8.0
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 388 NTPRDTPEKTLKTPRETPDKT-LNTPRETPDKTLITPRKTPDRTLKTPRETPDRTLKTPR 446
T T+ P +P L +P TP K + P L +P TP +
Sbjct: 582 TTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTP-----SSP 636
Query: 447 ETPDKTLKTPRETPDKSLK 465
E+ K T +P+ S+K
Sbjct: 637 ESSIKVASTETASPESSIK 655
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.8 bits (69), Expect = 2.2
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 414 ETPDKTLITPRKTPDRTLK-TPRETPDRTLKTPRETPDKTLKTPRETPDKSLKTPRETPD 472
E PD+ +K P R++K ++T + E + + +S KTPR T
Sbjct: 60 EEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRR 119
Query: 473 KISVKSNSEVSNGVKTPKVSKKPLVTKVEKNS 504
K + S S+V KV K+ V K++++
Sbjct: 120 KAAAAS-SDVEEEKTEKKVRKRRKVKKMDEDV 150
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 30.9 bits (69), Expect = 2.7
Identities = 35/223 (15%), Positives = 53/223 (23%), Gaps = 17/223 (7%)
Query: 229 PDKTIKTPRET--PDETLKTTRETPDKTLKTPRDTPDKIVLKPNVEKPLSIVQTPRDTPE 286
P KT P P + T T D T TP T + P P S +
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTL--PEDTSPTSRTTSATPNAT 500
Query: 287 KIVNTPRDTPDKIVKTPRETPDKNLRTPRETPDKNLKTPRDTPDKIVLKPNVEKPPSIVL 346
T + + N +P TP I + PP+
Sbjct: 501 SPTPAVTTPNATSPTTQKTSDTPNATSP-------------TPIVIGVTTTATSPPTGTT 547
Query: 347 TPRETPDKTIKTPRDTPDKTIKTPRDTPDKIVLKPNIELIVNTPRDTPEKTLKTPRETPD 406
+ + + P + T ++
Sbjct: 548 SVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHST 607
Query: 407 KTLNTPRETPDKTLITPRKTPDRTLKTPRETPDRTLKTPRETP 449
N+ TP T P + T +TP + T P
Sbjct: 608 PRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGP 650
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 30.0 bits (68), Expect = 4.9
Identities = 23/199 (11%), Positives = 58/199 (29%), Gaps = 1/199 (0%)
Query: 229 PDKTIKTPRETPDETLKTTRETPDKTLKTPRDTPDKIVLKPNVEKPLSIVQTPRDT-PEK 287
K + P K ++ K+ + + + + ++ + P +
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Query: 288 IVNTPRDTPDKIVKTPRETPDKNLRTPRETPDKNLKTPRDTPDKIVLKPNVEKPPSIVLT 347
+ D ++ K + + + + + + D + + + P V
Sbjct: 1221 SGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSA 1280
Query: 348 PRETPDKTIKTPRDTPDKTIKTPRDTPDKIVLKPNIELIVNTPRDTPEKTLKTPRETPDK 407
+ +P K P + K T K+ + L + EK +++ +
Sbjct: 1281 VQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTR 1340
Query: 408 TLNTPRETPDKTLITPRKT 426
+ L PRK
Sbjct: 1341 VKQASASQSSRLLRRPRKK 1359
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 29.6 bits (66), Expect = 5.7
Identities = 58/275 (21%), Positives = 89/275 (32%), Gaps = 45/275 (16%)
Query: 181 RDTPDKIMLKTNAEKPPSIVQI------PKDTPEKIVNTPRDTPDKTIKTPRETPDKTIK 234
RD + M+ +++ P S ++ P+ T + TP + T PR T T
Sbjct: 65 RDLSNDEMMMVSSDPPKSSSEMEGEMLAPQATVGRDEATPSIAMENTPSPPRRTAKITPT 124
Query: 235 TPRETPDETLKTTRETPDKTLKTPRDTPDKIVLKPNVEKPLSIVQTPRDTPEKIVNTPRD 294
TP+ T T + T TP + + + V +
Sbjct: 125 TPKNNYSPTAAGTERVKEDTPATPSRALN---------------HYISTSGRQRVKSYTP 169
Query: 295 TPDKIVKTPRETPDKNLRTPRETPDKNLKTPRDTPDKIVLKPNVEKPPSIVLTPRE---T 351
P VK+ T + K + TP + N P + + PR T
Sbjct: 170 KPRGEVKSSSPTQTRE------------KVRKYTPSPLGRMVNSYAPSTFMTMPRSHGIT 217
Query: 352 PDKTIKTPRDTPDKTIKTPRD---TPDKIVLKPNIELIVNTP----RDTPEKTLKTPRET 404
P T+K T + T K P + NTP R+ L +PR
Sbjct: 218 PRTTVKDSEITATYKMLETNPSKRTAGKTTPTPLKGMTDNTPTFLTREVETDLLTSPRSV 277
Query: 405 PDK-TLNTPRETPDKTLITPRKTPDRT-LKTPRET 437
+K TL TPR + + L TP+ T
Sbjct: 278 VEKNTLTTPRRVESNSSTNHWGLVGKNNLTTPQGT 312
>gnl|CDD|234166 TIGR03310, matur_ygfJ, molybdenum hydroxylase accessory protein,
YgfJ family. Members of this protein family are
probable accessory proteins for the biosynthesis of
enzymes related to xanthine dehydrogenase. Comparative
genomics suggests a role in the maturation of
selenium-dependent molybdenum hydroxylases, although a
tenuous alternative hypothesis is a role for this
protein (with a requirement for SelD, the selenium donor
protein in the selenocysteine and selenouridine
biosynthesis pathways) metabolizing a
selenium-containing substrate such as selenate.
Length = 188
Score = 28.1 bits (63), Expect = 9.2
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 126 DKPFNIFQTPKDTPDKTANTPRDTPDKIVLKTKVEKSPSIVLTPRDTPEKTIKTPRDTPD 185
D+PF D D+IV+ K VL PR + + DT
Sbjct: 99 DQPF----VTPDIIQLLLEAFALKNDEIVVPLYKGKRGHPVLFPRKLFPELLALTGDTGG 154
Query: 186 KIMLKTNAEKPPSIVQIPK-------DTPE 208
+ +L+ V++ DTPE
Sbjct: 155 RQILRELPH-EVKYVEVKDPGILFDIDTPE 183
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 29.0 bits (65), Expect = 9.9
Identities = 21/141 (14%), Positives = 34/141 (24%), Gaps = 22/141 (15%)
Query: 208 EKIVNTPRDTPDKTIKTPRETPDKTIKTPRETPDETLKTTRETPDKTLKTPRDTPDKIVL 267
E + + R + + T T TT +T K K+ L
Sbjct: 225 EVNESDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKSIDDHKLSL 284
Query: 268 KPNVEKPLSIVQTPRDTPEKIVNTPRDTPDKIVKTPRETPDKN--LRTPRETPDKNLKTP 325
PEK N + D + K+ L+ R +
Sbjct: 285 NQ--------------APEKFKNNTKPDDDPQSDFSDKGSRKSGSLKDVRIDNISCSVSH 330
Query: 326 RDT------PDKIVLKPNVEK 340
+ I+ N K
Sbjct: 331 NGVNISISPTETIISVSNKIK 351
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.127 0.358
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,754,434
Number of extensions: 2890651
Number of successful extensions: 2106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1880
Number of HSP's successfully gapped: 212
Length of query: 598
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 496
Effective length of database: 6,413,494
Effective search space: 3181093024
Effective search space used: 3181093024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 62 (27.9 bits)