RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8310
(598 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 1e-08
Identities = 75/481 (15%), Positives = 130/481 (27%), Gaps = 118/481 (24%)
Query: 159 VEKSPSIVLTPRDTPEKTIKTPRDTPDKIMLKTNAEKPPSIVQ------IPKDTP---EK 209
V+ P +L+ + + + + T K +VQ + +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 210 IVNTPRDTPDKTIKTPRETPDKTIKTPRETPDETLKTTRETPDKTLKTP--RDTPDKIVL 267
I R P + E D+ + + +R P L+ P K VL
Sbjct: 98 IKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVL 154
Query: 268 KPNVE------KPLSIVQTPRDTPEKIVNTPRDTPDKI-------VKTPRETPDKNLRTP 314
++ K + + KI +P + L+
Sbjct: 155 ---IDGVLGSGKTWVALDVCLSYKVQCKM-----DFKIFWLNLKNCNSPETVL-EMLQKL 205
Query: 315 RETPDKNLKTPRDTPDKIVLKPNVEK------------PPS-IVLTPRETPDKTIKTPRD 361
D N + D I L+ + + +VL + +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFN 263
Query: 362 TPDKTIKTPRDTPDKIVLKPNIELIVNTPRDTPEKTLKTPRETPD---KTLNT-----PR 413
K + T R L + D TL TP E K L+ PR
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPR 320
Query: 414 ETPDKTLITPRKTP--DRTLKTPRETPDRTLKTPRETPDKTLKTPRETPDKSLK--TPRE 469
E PR+ +++ T D + ++ SL P E
Sbjct: 321 EVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-------SSLNVLEPAE 370
Query: 470 T----------PD--KISVK---------SNSEVSNGVKTPKVSKKPLVTKVEKNS---- 504
P I S+V V K+ K LV K K S
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQPKESTISI 428
Query: 505 ----LASQKKIQEQ----KILLRNLKKTKLRLVKKKVPVVMRQV-------HLQEMNHQE 549
L + K++ + + ++ + K +P + Q HL+ + H E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 550 K 550
+
Sbjct: 489 R 489
Score = 44.5 bits (104), Expect = 9e-05
Identities = 44/293 (15%), Positives = 87/293 (29%), Gaps = 88/293 (30%)
Query: 371 RDTPD--KIVL-KPNIELIVNTP-------------RDTPEKTLKTPRETPDKT----LN 410
+D D K +L K I+ I+ + E+ ++ E + L
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 411 TP--RETPDKTLITPR--KTPDRTLKTPRETPDRTLKTPRETPDKTLKTPRETPDKSLKT 466
+P E +++T + DR + + R P L+ ++L
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR-------QALLE 146
Query: 467 PRETPD----------K----ISVKSNSEV----SNGV--------KTPKVSKKPLVT-- 498
R + K + V + +V + +P+ + L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 499 -KVEKNSLASQKKIQEQKILLRNLKKTKLRLVKKKV-P---VVMRQV----HLQEMNHQ- 548
+++ N + K+ + +++ RL+K K +V+ V N
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 549 -------EKNIVRVPVPAVVVCHRVKKMLDHSEPVRPLMTLESRPTPVELLVN 594
K + + A H LDH L E + LL+
Sbjct: 267 KILLTTRFKQVTDF-LSAATTTHIS---LDHHSM--TLTPDEVK----SLLLK 309
Score = 44.5 bits (104), Expect = 1e-04
Identities = 64/466 (13%), Positives = 131/466 (28%), Gaps = 108/466 (23%)
Query: 47 RETPD--KTLKTPRETPDKTLKTP--RETPDKTIKTPRETPDKTLKTPRETPDKT----L 98
++ D K++ + E D + + + T ++ ++ E + L
Sbjct: 36 KDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 99 KTP--RETPDRSLKTPR--ETPDKIVLKPSVDKPFNIFQTPKDTPDKTANTPRDTPDKIV 154
+P E S+ T E D++ V +N+ + + A P K V
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNV 153
Query: 155 LKTKVE------KSPSIVLTP---RDTPEKTIKTPRDTPDKIM-LK-TNAEKPPSIVQIP 203
L ++ K+ + + KI L N P +++++
Sbjct: 154 L---IDGVLGSGKT---WVALDVCLSYKVQCKM-----DFKIFWLNLKNCNSPETVLEML 202
Query: 204 KDTPEKIVNTPRDTPDKTIKTPRETPD-----KTIKTPRETPDETL-------KTTRETP 251
+ +I D + + + + + L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 252 D---KTLKTPRDTPDKIVLKPNVEKPLSIVQ-----TPRDTPE---KIVNTPRDTPDKIV 300
+ K L T R L +S+ TP + K ++ P +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDL- 318
Query: 301 KTPRETPDKN----------LRTPRETPDKNLKTPRDTPDKIVLKPNVEKPPSIVLTPRE 350
PRE N +R T D N K +++ ++ VL P E
Sbjct: 319 --PREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLN-----VLEPAE 370
Query: 351 T----PDKTIKTPRDT--PDKTIKT-----PRDTPDKIVLKPNIELIVNTPRDTPEKTLK 399
++ P P + + +V K + +V + E T+
Sbjct: 371 YRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTI- 426
Query: 400 TPRETPDKTLNTPRETPD-----KTLIT----PRKTPDRTLKTPRE 436
P L + + ++++ P+ L P
Sbjct: 427 ---SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.003
Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 50/143 (34%)
Query: 466 TPRETPDKISVKSNSEVSNGVKTP-----KVSKKPLVTKVEK-N-SLASQKKIQEQKILL 518
P + ++ + E + GV +P ++++ + V K N L + K+++ I L
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE---ISL 370
Query: 519 RN-------------LKKTKLRLVKKKVPVVMRQVHLQEMNHQEKNIVRVPVP--AVVVC 563
N L L L K K P + Q R+P +
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-------------SRIPFSERKLKFS 417
Query: 564 HRVKKMLD-----HSEPVRPLMT 581
+R L HS L+
Sbjct: 418 NRF---LPVASPFHS----HLLV 433
Score = 37.3 bits (86), Expect = 0.018
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 30/72 (41%)
Query: 163 PSIVLTP---RDTPEKTIKTPRDTPDKIML---------------KTNAEKPP-SIVQIP 203
P+ L P D+ E P +P ML KTN+ P V+I
Sbjct: 315 PNTSLPPSILEDSLENNEGVP--SP---MLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 204 KDTPEKIVNTPR 215
+VN +
Sbjct: 370 ------LVNGAK 375
Score = 37.0 bits (85), Expect = 0.019
Identities = 30/188 (15%), Positives = 53/188 (28%), Gaps = 74/188 (39%)
Query: 91 RETPDKTLKTPRETPDRSLKTPRETPDKIVLKPSVD------KPFN---------IFQTP 135
P T ++ + RE ++ + VD K F F++
Sbjct: 1666 INNP--VNLTIHFGGEKGKRI-RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 136 KDTPDKTANT-PRDTPDKI---------VLKTK-VEKSPSI-----------------VL 167
K T T P + LK+K + + + V+
Sbjct: 1723 KGLLSATQFTQPA-----LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 168 TPRDTPE------KTIKT--PRD------------TPDKIMLKTNAEKPPSIV-QIPKDT 206
+ E T++ PRD P ++ + E +V ++ K T
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 207 PEK--IVN 212
IVN
Sbjct: 1838 GWLVEIVN 1845
Score = 33.9 bits (77), Expect = 0.22
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 24/91 (26%)
Query: 182 DTPDKIMLKTNAEKPPSIVQIPKDTPEKIV--------------------NTPRDTPDKT 221
+ D T SI+ I + P + T D KT
Sbjct: 1647 NRADNHFKDTYGF---SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 222 IKTPRETPDKTIKTPRETPDETLKTTRET-P 251
K +E + + + L T+ T P
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 30.4 bits (67), Expect = 1.9
Identities = 45/249 (18%), Positives = 77/249 (30%), Gaps = 17/249 (6%)
Query: 259 RDTPDKIVLKPNVEKPLSIVQTPRDTPEKIVNTPRDTPDKIVKTPRETPDKNLRTPRETP 318
+ + ++K ++ R P K P D+P + ++ + LR PR P
Sbjct: 11 KASILTALMKSTTGDVEDVLIPKRFRPAK---DPLDSPQAAAQFLKDNKYRILR-PRAIP 66
Query: 319 D-KNLKTPRDTPDKIVLKPNVEKPPSIVLTPRETPDKTIKTPRDTPDKTIKTPRDTPDKI 377
L+T P + + + ++ + T P PD PD
Sbjct: 67 TMVELETDAALPRLRQMVEDGKLKDTVSVPEGTTAFYPKYYPFHKPDHDEVGTFGAPDIT 126
Query: 378 VLKPNIELIVNTPRDTPEKTLKTPRETPDKTLNT--------PRETPDKTLITPR---KT 426
+LK ++ T +TL+ RE R K + T R KT
Sbjct: 127 LLKQLTFFLLENDFPTGPETLRQVREAIATLQYGSGSYSGQLNRLLAMKGVATGRNPNKT 186
Query: 427 PDRTLKTPRETPDRTLKT-PRETPDKTLKTPRETPDKSLKTPRETPDKISVKSNSEVSNG 485
P T + +T P TP R P + + S + + +
Sbjct: 187 PKTVGYTNEQLAKLLEQTLPINTPKHEDPDLRWAPSWLINYTGDLSTDKSYLPHVTIKSS 246
Query: 486 VKTPKVSKK 494
P + K
Sbjct: 247 AGLPYIGKT 255
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.0
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 14 RETPDKTLKTPRETQDKTLKTSRETPDKTLKTPRETPDKTLKTPRETPDKTLKTPRETPD 73
+ P+ ++ RE Q K L+ + RE K L ++ + E +
Sbjct: 81 TQEPES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDL-------EEWNQRQSEQVE 132
Query: 74 KTIKTPRETPDKTLKTPRE 92
K R + P
Sbjct: 133 KNKINNRIADKAFYQQPDA 151
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 29.4 bits (65), Expect = 3.8
Identities = 25/165 (15%), Positives = 47/165 (28%), Gaps = 21/165 (12%)
Query: 196 PPSIVQIPKDTPEKIVNTPRDTPDKT-IKTPRETPDKTIKTPRETPDETLKTTRETPDKT 254
P + EK+ T + + + +K + + K +K
Sbjct: 796 PRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKK 855
Query: 255 LKTPRDTPDKIVLKPNVEKPLSIVQTP-RDTP--EKIVNTPRDT----------PDKIV- 300
D+ K V R P + ++ +D + +V
Sbjct: 856 GIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVV 915
Query: 301 ---KTPRETPDKNLRTPRETPDKNLKTPRDTPDKIVLKPNVEKPP 342
+ P+E P + T R+ D N P TP K+ +
Sbjct: 916 LRDREPKE-PVALIETVRQMKDVNAPLP--TPFKVDDNVDFPSAL 957
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.127 0.358
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,086,092
Number of extensions: 482293
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 16
Length of query: 598
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 499
Effective length of database: 3,937,614
Effective search space: 1964869386
Effective search space used: 1964869386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 60 (27.5 bits)