Query psy8311
Match_columns 254
No_of_seqs 268 out of 1490
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:31:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfq_A PKC-B, PKC-beta, protei 99.9 1.7E-25 5.9E-30 218.0 4.8 146 32-250 9-154 (674)
2 2enn_A NPKC-theta, protein kin 99.8 6.6E-21 2.3E-25 135.6 6.4 73 44-116 4-76 (77)
3 2yuu_A NPKC-delta, protein kin 99.8 3.7E-19 1.3E-23 128.4 6.0 73 49-121 3-75 (83)
4 3uej_A NPKC-delta, protein kin 99.6 4.3E-17 1.5E-21 112.2 2.9 59 57-115 3-61 (65)
5 2enz_A NPKC-theta, protein kin 99.6 1.4E-16 4.6E-21 109.6 5.1 58 57-114 6-63 (65)
6 2db6_A SH3 and cysteine rich d 99.6 1.1E-16 3.6E-21 112.9 3.7 61 57-117 11-72 (74)
7 1y8f_A UNC-13 homolog A, MUNC1 99.6 2.8E-16 9.6E-21 108.3 3.7 56 60-115 10-65 (66)
8 1ptq_A Protein kinase C delta 99.6 2.8E-16 9.7E-21 102.3 3.3 50 64-113 1-50 (50)
9 2eli_A Protein kinase C alpha 99.6 6.4E-16 2.2E-20 111.8 4.8 62 60-121 14-75 (85)
10 2row_A RHO-associated protein 99.6 1.3E-15 4.6E-20 109.1 3.7 59 57-115 18-81 (84)
11 1faq_A RAF-1; transferase, ser 99.5 1.5E-14 5.2E-19 94.8 3.3 51 61-115 1-51 (52)
12 2enz_A NPKC-theta, protein kin 99.5 4.8E-14 1.6E-18 96.8 5.4 59 192-250 6-64 (65)
13 1rfh_A RAS association (ralgds 99.4 1E-13 3.5E-18 93.2 2.1 52 60-114 7-59 (59)
14 1ptq_A Protein kinase C delta 99.4 1.2E-13 4.1E-18 89.8 2.3 49 199-247 1-49 (50)
15 4b6d_A RAC GTPase-activating p 99.4 4.3E-13 1.5E-17 90.6 5.0 55 61-116 6-60 (61)
16 2fnf_X Putative RAS effector N 99.4 2.5E-13 8.6E-18 94.9 3.8 52 60-114 20-72 (72)
17 1y8f_A UNC-13 homolog A, MUNC1 99.4 1.5E-13 5E-18 94.6 2.2 55 194-248 9-63 (66)
18 2eli_A Protein kinase C alpha 99.4 7.6E-13 2.6E-17 95.5 5.5 56 194-249 13-68 (85)
19 2db6_A SH3 and cysteine rich d 99.3 4.8E-13 1.6E-17 94.1 3.8 53 194-246 13-65 (74)
20 2enn_A NPKC-theta, protein kin 99.3 5.9E-13 2E-17 94.3 3.5 53 196-248 21-73 (77)
21 3uej_A NPKC-delta, protein kin 99.3 2.9E-13 1E-17 92.8 1.8 54 196-249 7-60 (65)
22 3pfq_A PKC-B, PKC-beta, protei 99.3 6.3E-13 2.2E-17 129.4 3.9 103 2-117 47-156 (674)
23 2yuu_A NPKC-delta, protein kin 99.3 1.3E-12 4.6E-17 93.9 4.0 54 195-248 14-67 (83)
24 1r79_A Diacylglycerol kinase, 99.2 2.5E-12 8.5E-17 92.1 2.7 61 192-252 21-82 (84)
25 2row_A RHO-associated protein 99.2 1.8E-12 6.2E-17 92.8 1.5 53 196-248 22-79 (84)
26 1rfh_A RAS association (ralgds 99.2 5.5E-12 1.9E-16 84.7 2.1 52 194-248 6-58 (59)
27 1faq_A RAF-1; transferase, ser 99.2 1.6E-11 5.5E-16 80.2 3.9 48 197-248 2-49 (52)
28 2fnf_X Putative RAS effector N 99.2 1.5E-11 5.3E-16 85.8 3.9 51 195-248 20-71 (72)
29 3cxl_A N-chimerin; SH2, RHO-GA 99.2 4.7E-12 1.6E-16 118.2 0.9 102 61-171 207-308 (463)
30 1kbe_A Kinase suppressor of RA 99.1 9.5E-11 3.2E-15 75.3 4.2 44 62-110 3-46 (49)
31 4b6d_A RAC GTPase-activating p 99.1 5.9E-11 2E-15 80.0 2.7 53 195-248 5-57 (61)
32 1kbe_A Kinase suppressor of RA 99.0 1.7E-10 5.8E-15 74.1 4.2 46 196-246 2-47 (49)
33 3ky9_A Proto-oncogene VAV; cal 98.9 4.2E-10 1.4E-14 107.9 4.3 59 60-119 515-573 (587)
34 2vrw_B P95VAV, VAV1, proto-onc 98.8 1.3E-09 4.5E-14 99.8 4.3 58 60-118 343-400 (406)
35 3cxl_A N-chimerin; SH2, RHO-GA 98.4 5.6E-08 1.9E-12 90.6 2.7 54 195-248 206-259 (463)
36 1r79_A Diacylglycerol kinase, 98.4 7.6E-08 2.6E-12 68.7 2.1 73 111-184 3-76 (84)
37 3ky9_A Proto-oncogene VAV; cal 98.3 2.3E-07 7.8E-12 88.9 3.5 52 194-245 514-565 (587)
38 2vrw_B P95VAV, VAV1, proto-onc 98.3 3.6E-07 1.2E-11 83.4 3.4 52 195-246 343-394 (406)
39 1v5n_A PDI-like hypothetical p 92.8 0.043 1.5E-06 39.1 1.8 47 59-109 32-79 (89)
40 2ct0_A Non-SMC element 1 homol 82.5 0.47 1.6E-05 32.4 1.3 35 71-109 12-46 (74)
41 1v5n_A PDI-like hypothetical p 79.0 0.79 2.7E-05 32.4 1.6 41 199-243 38-78 (89)
42 3nw0_A Non-structural maintena 74.6 1.1 3.7E-05 37.6 1.5 33 73-109 179-211 (238)
43 2ysm_A Myeloid/lymphoid or mix 62.5 14 0.00047 26.6 5.2 77 74-177 7-83 (111)
44 2yt5_A Metal-response element- 56.5 7.9 0.00027 25.1 2.7 35 74-108 6-40 (66)
45 2csz_A Synaptotagmin-like prot 54.2 5 0.00017 27.4 1.4 38 209-246 25-62 (76)
46 1wev_A Riken cDNA 1110020M19; 52.5 9.5 0.00032 26.6 2.7 34 74-107 16-49 (88)
47 1dl6_A Transcription factor II 51.4 23 0.00079 22.5 4.2 46 205-250 7-54 (58)
48 2ku3_A Bromodomain-containing 48.7 9.7 0.00033 25.4 2.2 45 205-249 12-58 (71)
49 2csz_A Synaptotagmin-like prot 48.0 10 0.00034 25.9 2.1 35 74-108 25-59 (76)
50 1pft_A TFIIB, PFTFIIBN; N-term 47.3 21 0.00073 21.6 3.5 40 211-250 7-48 (50)
51 2ku3_A Bromodomain-containing 43.5 10 0.00034 25.4 1.6 37 72-108 14-50 (71)
52 2yql_A PHD finger protein 21A; 41.3 18 0.00061 22.7 2.4 29 74-107 9-37 (56)
53 2puy_A PHD finger protein 21A; 41.1 17 0.00057 23.1 2.3 29 74-107 5-33 (60)
54 1f62_A Transcription factor WS 37.0 14 0.00049 22.5 1.4 30 76-107 2-31 (51)
55 1wil_A KIAA1045 protein; ring 36.9 12 0.00042 26.0 1.2 40 208-250 14-56 (89)
56 1xwh_A Autoimmune regulator; P 36.6 21 0.00072 23.2 2.3 29 74-107 8-36 (66)
57 1mm2_A MI2-beta; PHD, zinc fin 36.6 15 0.00052 23.5 1.6 29 74-107 9-37 (61)
58 2l5u_A Chromodomain-helicase-D 35.5 14 0.00047 23.7 1.2 31 73-108 10-40 (61)
59 2yt5_A Metal-response element- 34.9 45 0.0015 21.3 3.8 35 209-243 6-40 (66)
60 2lri_C Autoimmune regulator; Z 33.1 16 0.00055 24.0 1.3 29 74-107 12-40 (66)
61 3nw0_A Non-structural maintena 32.9 9.9 0.00034 31.6 0.2 31 209-243 180-210 (238)
62 2jmi_A Protein YNG1, ING1 homo 32.6 30 0.001 24.2 2.7 34 71-108 23-59 (90)
63 1zbd_B Rabphilin-3A; G protein 31.7 31 0.0011 26.0 2.8 37 73-109 54-90 (134)
64 2zet_C Melanophilin; complex, 31.6 28 0.00096 26.9 2.6 38 209-246 68-105 (153)
65 1we9_A PHD finger family prote 29.8 37 0.0013 21.6 2.7 35 73-108 5-39 (64)
66 2zet_C Melanophilin; complex, 28.7 33 0.0011 26.5 2.6 35 73-107 67-101 (153)
67 1zbd_B Rabphilin-3A; G protein 28.5 35 0.0012 25.7 2.6 37 208-244 54-90 (134)
68 3c6w_A P28ING5, inhibitor of g 28.0 37 0.0013 21.6 2.3 33 72-108 7-42 (59)
69 4ayb_P DNA-directed RNA polyme 28.0 22 0.00076 21.8 1.1 30 211-240 5-37 (48)
70 3o70_A PHD finger protein 13; 27.9 44 0.0015 21.8 2.8 34 73-109 18-51 (68)
71 2l43_A N-teminal domain from h 27.7 15 0.00052 25.5 0.4 36 73-108 24-59 (88)
72 1wen_A Inhibitor of growth fam 26.9 43 0.0015 22.2 2.6 33 72-108 14-49 (71)
73 1wff_A Riken cDNA 2810002D23 p 26.8 43 0.0015 23.2 2.6 25 74-101 25-49 (85)
74 2k16_A Transcription initiatio 25.9 27 0.00093 23.1 1.4 33 74-108 18-50 (75)
75 1wev_A Riken cDNA 1110020M19; 25.1 51 0.0018 22.7 2.8 34 209-242 16-49 (88)
76 2g6q_A Inhibitor of growth pro 24.9 45 0.0015 21.4 2.3 33 72-108 9-44 (62)
77 1weu_A Inhibitor of growth fam 24.4 43 0.0015 23.5 2.3 33 72-108 34-69 (91)
78 3h0g_I DNA-directed RNA polyme 23.3 38 0.0013 24.5 1.9 29 74-102 4-37 (113)
79 2vnf_A ING 4, P29ING4, inhibit 23.1 51 0.0018 20.9 2.3 33 72-108 8-43 (60)
80 2e5r_A Dystrobrevin alpha; ZZ 21.7 42 0.0014 21.7 1.7 21 74-97 11-32 (63)
81 2kwj_A Zinc finger protein DPF 21.5 63 0.0021 23.3 2.8 81 75-177 2-87 (114)
82 1fp0_A KAP-1 corepressor; PHD 21.0 57 0.0019 22.7 2.3 30 73-107 24-53 (88)
83 2e6r_A Jumonji/ARID domain-con 20.9 59 0.002 22.6 2.5 33 73-107 15-47 (92)
84 3h0g_L DNA-directed RNA polyme 20.1 46 0.0016 21.7 1.6 27 210-236 22-48 (63)
No 1
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.91 E-value=1.7e-25 Score=218.01 Aligned_cols=146 Identities=45% Similarity=0.912 Sum_probs=49.6
Q ss_pred CCCCcccccccccccccccCcccccceeecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEcccccccccc
Q psy8311 32 DLPLVDEENVFGRAITRRRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLT 111 (254)
Q Consensus 32 ~~~~~~~~k~~~~~~~~r~~~~~~~~~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~ 111 (254)
+.++..++... ...|++|++.++++.+++|.|..++|.+|+||++|+++|||+++|||+|..|++++|++|...+..
T Consensus 9 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~ 85 (674)
T 3pfq_A 9 PPPSEGEESTV---RFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTF 85 (674)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCcccchh---hhhccCcccccCCcccCCceEEeeeCCCCCccccccccccccCCceeECCCCCCCcChhhcCcCcc
Confidence 44444444422 235788999888999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcchhhhhhccccccccccccccCCCCccccccccccccccccceecccceeeeeeeeeeeEEeeccccccc
Q psy8311 112 KCSGSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVVDLLYEIYEVIVFGFQYLRE 191 (254)
Q Consensus 112 ~C~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~pt~C~~C~~~i~gl~kqgl~C~~C~~~~h~~~~~~~~~~~~~~~~~ 191 (254)
.|+........
T Consensus 86 ~c~~~~~~~~~--------------------------------------------------------------------- 96 (674)
T 3pfq_A 86 SCPGADKGPAS--------------------------------------------------------------------- 96 (674)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCccccccc---------------------------------------------------------------------
Confidence 99755321000
Q ss_pred cccCCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCccccc
Q psy8311 192 RFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEKAL 250 (254)
Q Consensus 192 ~~~~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~~~ 250 (254)
....++|+|..+++..+++|++|+++++|+.+||++|.||++++|.+|...++..+..
T Consensus 97 -~~~~~~h~~~~~~~~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~ 154 (674)
T 3pfq_A 97 -DDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGT 154 (674)
T ss_dssp ------CCCCCEECCSSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSCCCSSS
T ss_pred -ccccCCcceeecCCCCCCCCCccccccchhhcCccccccCCcchhhhhhhccCccccc
Confidence 0012579999999999999999999999999999999999999999999998877643
No 2
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=6.6e-21 Score=135.63 Aligned_cols=73 Identities=59% Similarity=1.199 Sum_probs=68.9
Q ss_pred cccccccCcccccceeecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCCC
Q psy8311 44 RAITRRRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGS 116 (254)
Q Consensus 44 ~~~~~r~~~~~~~~~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~ 116 (254)
.++.+|++|+++++++.+++|.|..++|..|++|++|.++|||+.+|||+|++|++++|++|...++.+|...
T Consensus 4 ~~~~~r~ga~r~~~~~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~ 76 (77)
T 2enn_A 4 GSSGQRRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCTGS 76 (77)
T ss_dssp CCCCCCCCCCCCCCCEESSSCEEEEECCSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCSCCCCC
T ss_pred ccccccCccccccccccCCCCccEEEcCCCCcCccccChhhccccccccCcCCCCCcCCHhHHhhCcCCCCCC
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999754
No 3
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=128.41 Aligned_cols=73 Identities=49% Similarity=1.115 Sum_probs=67.5
Q ss_pred ccCcccccceeecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCCCCCCCc
Q psy8311 49 RRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGRESE 121 (254)
Q Consensus 49 r~~~~~~~~~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~~~~~~ 121 (254)
|.+|+++++++.+++|.|..++|..|++|++|.++|||+++|||+|++|++++|++|...++..|........
T Consensus 3 ~~~a~r~~k~~~~~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v~~~C~~~~~~~~ 75 (83)
T 2yuu_A 3 SGSSGKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSR 75 (83)
T ss_dssp CCCCCCCCCEECGGGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTCCSCCSSCCCCCS
T ss_pred cccccchhhCcccCCCceEeEeCCCCcChhhcChhhccccccccccCCcCCeeChhhhhhCCCcCCCccccCc
Confidence 5678888999999999999999999999999999999999999999999999999999999999998765543
No 4
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=99.65 E-value=4.3e-17 Score=112.16 Aligned_cols=59 Identities=37% Similarity=0.841 Sum_probs=55.7
Q ss_pred ceeecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCC
Q psy8311 57 KVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSG 115 (254)
Q Consensus 57 ~~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~ 115 (254)
+++.+++|.|..++|.+|++|++|+++|||+.+|||+|++|++++|++|...++..|..
T Consensus 3 ~~~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 61 (65)
T 3uej_A 3 RRASVGSHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCEF 61 (65)
T ss_dssp CCEEEEECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSEEEE
T ss_pred cceEeCCceEEeEeCCCCCcccccChhhhccCceeeECCCCCCeEchhHhhhCCCcCCC
Confidence 55778999999999999999999999999999999999999999999999999998864
No 5
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=109.61 Aligned_cols=58 Identities=33% Similarity=0.838 Sum_probs=53.8
Q ss_pred ceeecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccC
Q psy8311 57 KVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCS 114 (254)
Q Consensus 57 ~~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~ 114 (254)
++....+|.|..++|..|++|++|+++|||+.+|||+|++|++++|++|...++..|.
T Consensus 6 ~~~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~ 63 (65)
T 2enz_A 6 SGKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCG 63 (65)
T ss_dssp CCCCCCCCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTTSCSCTT
T ss_pred cCCCCCCCccEeEcCCCCcCchhcChhheecCCcccccCCCCCccCHhHHhhCcCcCC
Confidence 3344679999999999999999999999999999999999999999999999999886
No 6
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=112.94 Aligned_cols=61 Identities=33% Similarity=0.782 Sum_probs=55.7
Q ss_pred ceeecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEcccccccccc-ccCCCC
Q psy8311 57 KVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLT-KCSGSG 117 (254)
Q Consensus 57 ~~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~-~C~~~~ 117 (254)
+++...+|.|+.++|.+|++|++|+++|||+.+|||+|++|++++|++|...++. +|....
T Consensus 11 k~~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~~C~~~~ 72 (74)
T 2db6_A 11 KLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCSGPS 72 (74)
T ss_dssp CCSCSSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGGSSSBCCCCC
T ss_pred ccccCCCCceEEeeCCCCcCchhcChhhccccCCccccCCCCCccChhHHhhCCCCcCCCCC
Confidence 3556789999999999999999999999999999999999999999999999986 688653
No 7
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=99.61 E-value=2.8e-16 Score=108.35 Aligned_cols=56 Identities=34% Similarity=0.748 Sum_probs=50.2
Q ss_pred ecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCC
Q psy8311 60 QVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSG 115 (254)
Q Consensus 60 ~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~ 115 (254)
...+|.|..++|..|++|++|.++|||+.+|||+|++|++++|++|...++..|.+
T Consensus 10 ~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 65 (66)
T 1y8f_A 10 GGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCKL 65 (66)
T ss_dssp ---CCCEEEEECSSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHSCCCC--
T ss_pred CCCCcccEeeeCCCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhCcCcCCC
Confidence 35789999999999999999999999999999999999999999999999999864
No 8
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=99.60 E-value=2.8e-16 Score=102.32 Aligned_cols=50 Identities=42% Similarity=1.006 Sum_probs=48.0
Q ss_pred CeEEEEeecCCccCcccccccCcccccceeccccceEEcccccccccccc
Q psy8311 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113 (254)
Q Consensus 64 H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C 113 (254)
|.|..++|.+|++|++|+++|||+.+|||+|++|++++|++|...++..|
T Consensus 1 H~F~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T 1ptq_A 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50 (50)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSCC
T ss_pred CCCEeecCCCCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhhcCCCC
Confidence 88999999999999999999999999999999999999999999988776
No 9
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.4e-16 Score=111.80 Aligned_cols=62 Identities=32% Similarity=0.697 Sum_probs=57.1
Q ss_pred ecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCCCCCCCc
Q psy8311 60 QVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGRESE 121 (254)
Q Consensus 60 ~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~~~~~~ 121 (254)
...+|.|..++|..|++|++|.++|||+.+|||+|++|++++|++|...++..|.....++.
T Consensus 14 ~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~~e~r 75 (85)
T 2eli_A 14 PRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEKR 75 (85)
T ss_dssp TTTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCCCCCCCCC
T ss_pred CCCCcccEeeeCCCCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCCcchhhCc
Confidence 35789999999999999999999999999999999999999999999999999987765543
No 10
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.56 E-value=1.3e-15 Score=109.09 Aligned_cols=59 Identities=29% Similarity=0.648 Sum_probs=54.5
Q ss_pred ceeecCCCeEEEEeecCCccCcccccccCccccc--ceeccccceEEcccccc---ccccccCC
Q psy8311 57 KVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQ--GYQCQTCQTAVHKKCHD---KLLTKCSG 115 (254)
Q Consensus 57 ~~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~q--g~~C~~C~~~~Hk~C~~---~~~~~C~~ 115 (254)
.+....||.|..++|..||+|++|+++|||+++| ||+|.+|++++|++|.. .+...|..
T Consensus 18 ~~~~~~~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~ 81 (84)
T 2row_A 18 NYICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKV 81 (84)
T ss_dssp CCEEETTEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCST
T ss_pred ceEEcCCcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCc
Confidence 3456899999999999999999999999999998 99999999999999998 78888874
No 11
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=99.48 E-value=1.5e-14 Score=94.83 Aligned_cols=51 Identities=37% Similarity=0.868 Sum_probs=48.5
Q ss_pred cCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCC
Q psy8311 61 VKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSG 115 (254)
Q Consensus 61 ~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~ 115 (254)
+++|.|..++|..|++|++|+++|| |||+|++|++++|++|...++..|.+
T Consensus 1 ~~~H~F~~~~~~~pt~C~~C~~~l~----qG~~C~~C~~~~H~~C~~~v~~~C~~ 51 (52)
T 1faq_A 1 LTTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMCVD 51 (52)
T ss_dssp CCCCCCEEECCSSCEECTTSSSEEC----SEEECTTTTCCBCSTTSSSSSSCCCC
T ss_pred CCCceeEeEeCCCCcCCCCcccccc----cCCEeCCCCCeEChhHHhhCcCcCCC
Confidence 4689999999999999999999999 99999999999999999999999875
No 12
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=4.8e-14 Score=96.79 Aligned_cols=59 Identities=49% Similarity=0.960 Sum_probs=53.5
Q ss_pred cccCCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCccccc
Q psy8311 192 RFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEKAL 250 (254)
Q Consensus 192 ~~~~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~~~ 250 (254)
.+....+|.|...++..|++|++|+++|||+.+||++|..|++++|++|..+++..+..
T Consensus 6 ~~~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 64 (65)
T 2enz_A 6 SGKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGI 64 (65)
T ss_dssp CCCCCCCCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTTSCSCTTT
T ss_pred cCCCCCCCccEeEcCCCCcCchhcChhheecCCcccccCCCCCccCHhHHhhCcCcCCC
Confidence 34456899999999999999999999999999999999999999999999999876643
No 13
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=99.38 E-value=1e-13 Score=93.24 Aligned_cols=52 Identities=25% Similarity=0.667 Sum_probs=48.2
Q ss_pred ecCCCeEEE-EeecCCccCcccccccCcccccceeccccceEEccccccccccccC
Q psy8311 60 QVKGHYFVA-KFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCS 114 (254)
Q Consensus 60 ~~~~H~f~~-~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~ 114 (254)
...+|.|.. ++|.+|+||++|+++| ++|||+|++|++++|++|...++..|.
T Consensus 7 ~~~~H~F~~~~~~~~pt~C~~C~~~i---~kqg~kC~~C~~~cH~kC~~~v~~~C~ 59 (59)
T 1rfh_A 7 RGEGHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDCR 59 (59)
T ss_dssp CCSSCCCEECCCSSCCEECTTTCSEE---CSCCEECTTTSCEECHHHHTTCCCCCC
T ss_pred CCCCCcCeeeeccCCCeEchhcchhh---hhCccEeCCCCCeEehhhhhhCcCCCC
Confidence 457999999 9999999999999999 489999999999999999999998874
No 14
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=99.38 E-value=1.2e-13 Score=89.76 Aligned_cols=49 Identities=57% Similarity=1.082 Sum_probs=46.7
Q ss_pred ceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCcc
Q psy8311 199 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDE 247 (254)
Q Consensus 199 H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~ 247 (254)
|.|...++..|++|++|+++|||+.+||++|..|++++|++|.+.++..
T Consensus 1 H~F~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~ 49 (50)
T 1ptq_A 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANL 49 (50)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSC
T ss_pred CCCEeecCCCCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhhcCCC
Confidence 8899999999999999999999999999999999999999999998764
No 15
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=99.37 E-value=4.3e-13 Score=90.55 Aligned_cols=55 Identities=29% Similarity=0.646 Sum_probs=51.2
Q ss_pred cCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCCC
Q psy8311 61 VKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGS 116 (254)
Q Consensus 61 ~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~ 116 (254)
..+|.|+.+++.+|++|++|++.|| +++|||+|.+|++.+|++|...++.+|.+.
T Consensus 6 ~~~H~F~~kt~~~~~~C~~Cg~~i~-~gkq~~kC~dC~~~cH~~C~~~~~~~C~p~ 60 (61)
T 4b6d_A 6 MRLHDFVSKTVIKPESCVPCGKRIK-FGKLSLKCRDCRVVSHPECRDRCPLPCIPT 60 (61)
T ss_dssp BCCCCEEEEECCSCEECTTTCCEEC-TTCEEEEESSSSCEECGGGGGGSCSSCCCC
T ss_pred ccceeEEeeeccCCcccccccCEEE-EeeEeeECCCCCCeEchhHhhcCCCCCCCC
Confidence 5789999999999999999999886 889999999999999999999999999754
No 16
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=99.37 E-value=2.5e-13 Score=94.93 Aligned_cols=52 Identities=25% Similarity=0.667 Sum_probs=48.2
Q ss_pred ecCCCeEEE-EeecCCccCcccccccCcccccceeccccceEEccccccccccccC
Q psy8311 60 QVKGHYFVA-KFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCS 114 (254)
Q Consensus 60 ~~~~H~f~~-~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~ 114 (254)
...+|.|.. ++|..|+||++|+++| ++|||+|++|++++|++|...|+..|.
T Consensus 20 ~~~~H~F~~~~~~~~pt~C~~C~~~l---~~qG~kC~~C~~~cHkkC~~~V~~~C~ 72 (72)
T 2fnf_X 20 RGEGHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDCR 72 (72)
T ss_dssp GCSSCCCEECCCCSSCCBCTTTSSBC---SSCCEECTTSSCEECTGGGGGCCSCCC
T ss_pred cCCCCccceeecCCCCcchhhhhHHH---HhCcCccCCCCCeechhhhccCcCCCC
Confidence 357999999 9999999999999999 489999999999999999999998874
No 17
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=99.36 E-value=1.5e-13 Score=94.60 Aligned_cols=55 Identities=29% Similarity=0.665 Sum_probs=48.8
Q ss_pred cCCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCccc
Q psy8311 194 KIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEK 248 (254)
Q Consensus 194 ~~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~ 248 (254)
....+|.|...++..|++|++|+++|||+.+||++|..|++++|++|.++++..+
T Consensus 9 ~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C 63 (66)
T 1y8f_A 9 GGGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADC 63 (66)
T ss_dssp ----CCCEEEEECSSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHSCCCC
T ss_pred CCCCCcccEeeeCCCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhCcCcC
Confidence 3467899999999999999999999999999999999999999999999988755
No 18
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=7.6e-13 Score=95.55 Aligned_cols=56 Identities=41% Similarity=0.752 Sum_probs=51.5
Q ss_pred cCCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCcccc
Q psy8311 194 KIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEKA 249 (254)
Q Consensus 194 ~~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~~ 249 (254)
....+|.|...+|..|++|++|+++|||+.+||++|..|++++|++|.++++..+.
T Consensus 13 ~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~ 68 (85)
T 2eli_A 13 DPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCG 68 (85)
T ss_dssp CTTTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCC
T ss_pred CCCCCcccEeeeCCCCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCC
Confidence 44688999999999999999999999999999999999999999999999877553
No 19
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=94.08 Aligned_cols=53 Identities=28% Similarity=0.550 Sum_probs=49.9
Q ss_pred cCCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCc
Q psy8311 194 KIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSD 246 (254)
Q Consensus 194 ~~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~ 246 (254)
....+|.|...+|..|++|++|+++|||+.+||++|..|++++|++|..+++.
T Consensus 13 ~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~ 65 (74)
T 2db6_A 13 VNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEM 65 (74)
T ss_dssp SCSSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGGSS
T ss_pred ccCCCCceEEeeCCCCcCchhcChhhccccCCccccCCCCCccChhHHhhCCC
Confidence 34689999999999999999999999999999999999999999999999875
No 20
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.33 E-value=5.9e-13 Score=94.34 Aligned_cols=53 Identities=26% Similarity=0.531 Sum_probs=50.1
Q ss_pred CCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCccc
Q psy8311 196 DVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEK 248 (254)
Q Consensus 196 ~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~ 248 (254)
..+|.|...+|..|++|++|.++|||+.+||++|..|++++|++|.++++..+
T Consensus 21 ~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~C 73 (77)
T 2enn_A 21 VKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKC 73 (77)
T ss_dssp SSSCEEEEECCSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCSCC
T ss_pred CCCCccEEEcCCCCcCccccChhhccccccccCcCCCCCcCCHhHHhhCcCCC
Confidence 57899999999999999999999999999999999999999999999988655
No 21
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=99.32 E-value=2.9e-13 Score=92.80 Aligned_cols=54 Identities=52% Similarity=0.929 Sum_probs=50.3
Q ss_pred CCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCcccc
Q psy8311 196 DVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEKA 249 (254)
Q Consensus 196 ~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~~ 249 (254)
..+|.|.+.++..|++|++|+++|||+.+||++|..|++++|++|...++..+.
T Consensus 7 ~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~ 60 (65)
T 3uej_A 7 VGSHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60 (65)
T ss_dssp EEECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSEEE
T ss_pred eCCceEEeEeCCCCCcccccChhhhccCceeeECCCCCCeEchhHhhhCCCcCC
Confidence 358999999999999999999999999999999999999999999999887654
No 22
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.31 E-value=6.3e-13 Score=129.41 Aligned_cols=103 Identities=26% Similarity=0.579 Sum_probs=52.3
Q ss_pred CCcccchhhhhhhhhh-hhhh------cccccccCCCCCCCcccccccccccccccCcccccceeecCCCeEEEEeecCC
Q psy8311 2 SPTFCDHCGSLLSSVT-SRLR------AAHQRSSSDSDLPLVDEENVFGRAITRRRGAIKHQKVHQVKGHYFVAKFFRQP 74 (254)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~k~~~~~~~~r~~~~~~~~~~~~~~H~f~~~~~~~p 74 (254)
+||||+||+++|+++. +.++ +.|.+....-...++++.+.. + .......|.|..+++..+
T Consensus 47 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~-----------~--~~~~~~~h~~~~~~~~~~ 113 (674)
T 3pfq_A 47 QPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGP-----------A--SDDPRSKHKFKIHTYSSP 113 (674)
T ss_dssp --------------------------------------------------------------------CCCCCEECCSSC
T ss_pred CCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCccccc-----------c--cccccCCcceeecCCCCC
Confidence 6999999999999863 3333 455555432223333332211 0 111235899999999999
Q ss_pred ccCcccccccCcccccceeccccceEEccccccccccccCCCC
Q psy8311 75 TFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSG 117 (254)
Q Consensus 75 ~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~~ 117 (254)
++|++|+.+|||+..|||+|..|++++|++|...++..|....
T Consensus 114 ~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~d~ 156 (674)
T 3pfq_A 114 TFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDH 156 (674)
T ss_dssp CCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSCCCSSSCS
T ss_pred CCCCccccccchhhcCccccccCCcchhhhhhhccCccccccc
Confidence 9999999999999999999999999999999999999997543
No 23
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=93.86 Aligned_cols=54 Identities=28% Similarity=0.522 Sum_probs=50.1
Q ss_pred CCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCccc
Q psy8311 195 IDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEK 248 (254)
Q Consensus 195 ~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~ 248 (254)
...+|.|...+|..|++|++|+++|||+.+||++|..|++++|++|.+.++..+
T Consensus 14 ~~~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v~~~C 67 (83)
T 2yuu_A 14 YIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRC 67 (83)
T ss_dssp CGGGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTCCSCC
T ss_pred ccCCCceEeEeCCCCcChhhcChhhccccccccccCCcCCeeChhhhhhCCCcC
Confidence 357899999999999999999999999999999999999999999999887654
No 24
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=99.24 E-value=2.5e-12 Score=92.14 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=55.1
Q ss_pred cccCCCcceeeeccCCCCCccccccccccc-cccceEeccccCccccCCCccCCCcccccCC
Q psy8311 192 RFKIDVPHRFKPYNFMSPTFCDHCGSLLYG-LFRQGLKCEVCFSFCNTFSPPRLSDEKALDV 252 (254)
Q Consensus 192 ~~~~~~~H~f~~~~~~~pt~C~~C~~~~~g-~~~qg~~C~~C~~~~H~~C~~~~~~~~~~~~ 252 (254)
.....+.|+|+++|++.+++|.+|.+.+++ +.++|++|.||++++|.+|+++++.++.+|.
T Consensus 21 ~~~~~~~H~WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~~~eC~lG~ 82 (84)
T 1r79_A 21 ADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSGPS 82 (84)
T ss_dssp SSCCCBCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHCCSCBCCSC
T ss_pred CCCccceeeEEccCCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhccCcCCCCC
Confidence 334578999999999999999999999984 6779999999999999999999999999885
No 25
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.22 E-value=1.8e-12 Score=92.76 Aligned_cols=53 Identities=25% Similarity=0.516 Sum_probs=49.1
Q ss_pred CCcceeeeccCCCCCccccccccccccccc--eEeccccCccccCCCcc---CCCccc
Q psy8311 196 DVPHRFKPYNFMSPTFCDHCGSLLYGLFRQ--GLKCEVCFSFCNTFSPP---RLSDEK 248 (254)
Q Consensus 196 ~~~H~f~~~~~~~pt~C~~C~~~~~g~~~q--g~~C~~C~~~~H~~C~~---~~~~~~ 248 (254)
..+|.|...+|..||+|++|+++|||+++| |++|..|+++||++|.+ .+...+
T Consensus 22 ~~~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C 79 (84)
T 2row_A 22 HKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPC 79 (84)
T ss_dssp ETTEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCC
T ss_pred cCCcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCcccccccc
Confidence 578999999999999999999999999998 99999999999999998 676654
No 26
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=99.18 E-value=5.5e-12 Score=84.69 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=47.5
Q ss_pred cCCCcceeee-ccCCCCCccccccccccccccceEeccccCccccCCCccCCCccc
Q psy8311 194 KIDVPHRFKP-YNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEK 248 (254)
Q Consensus 194 ~~~~~H~f~~-~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~ 248 (254)
+...+|.|.. .++..|++|++|+++| .+||++|.+|++++|++|.++++..+
T Consensus 6 ~~~~~H~F~~~~~~~~pt~C~~C~~~i---~kqg~kC~~C~~~cH~kC~~~v~~~C 58 (59)
T 1rfh_A 6 ERGEGHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDC 58 (59)
T ss_dssp CCCSSCCCEECCCSSCCEECTTTCSEE---CSCCEECTTTSCEECHHHHTTCCCCC
T ss_pred cCCCCCcCeeeeccCCCeEchhcchhh---hhCccEeCCCCCeEehhhhhhCcCCC
Confidence 3468999999 9999999999999999 58999999999999999999988654
No 27
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=99.17 E-value=1.6e-11 Score=80.23 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=44.9
Q ss_pred CcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCccc
Q psy8311 197 VPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEK 248 (254)
Q Consensus 197 ~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~ 248 (254)
.+|.|...++..|++|++|+++|| ||++|..|++++|++|.++++..+
T Consensus 2 ~~H~F~~~~~~~pt~C~~C~~~l~----qG~~C~~C~~~~H~~C~~~v~~~C 49 (52)
T 1faq_A 2 TTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMC 49 (52)
T ss_dssp CCCCCEEECCSSCEECTTSSSEEC----SEEECTTTTCCBCSTTSSSSSSCC
T ss_pred CCceeEeEeCCCCcCCCCcccccc----cCCEeCCCCCeEChhHHhhCcCcC
Confidence 479999999999999999999998 899999999999999999988765
No 28
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=99.17 E-value=1.5e-11 Score=85.79 Aligned_cols=51 Identities=27% Similarity=0.492 Sum_probs=47.2
Q ss_pred CCCcceeee-ccCCCCCccccccccccccccceEeccccCccccCCCccCCCccc
Q psy8311 195 IDVPHRFKP-YNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEK 248 (254)
Q Consensus 195 ~~~~H~f~~-~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~ 248 (254)
...+|.|.. .++..|++|++|+++| .+||++|..|+++||++|.++++..+
T Consensus 20 ~~~~H~F~~~~~~~~pt~C~~C~~~l---~~qG~kC~~C~~~cHkkC~~~V~~~C 71 (72)
T 2fnf_X 20 RGEGHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDC 71 (72)
T ss_dssp GCSSCCCEECCCCSSCCBCTTTSSBC---SSCCEECTTSSCEECTGGGGGCCSCC
T ss_pred cCCCCccceeecCCCCcchhhhhHHH---HhCcCccCCCCCeechhhhccCcCCC
Confidence 468999999 9999999999999999 58999999999999999999988754
No 29
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.15 E-value=4.7e-12 Score=118.21 Aligned_cols=102 Identities=28% Similarity=0.618 Sum_probs=80.0
Q ss_pred cCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCCCCCCCcchhhhhhcccccccccccc
Q psy8311 61 VKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGRESESTIYLRERFKIDVPHRFKP 140 (254)
Q Consensus 61 ~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~H~~~~ 140 (254)
++.|.|..++|..|++|++|+++|||+.+||++|++|++++|++|...++..|...... ....|+.++......
T Consensus 207 v~~h~f~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~vp~~C~~~~~~------~~~vFG~~L~~~~~~ 280 (463)
T 3cxl_A 207 EKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKH------VKKVYSCDLTTLVKA 280 (463)
T ss_dssp CBCCCEEEECCSSCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTSCSBCCGGGGG------CCCCTTSCHHHHHHH
T ss_pred CCCcceEEeecCCCCcchhhhhhhhhHHhcCeeccccCccccccccccccccccccccc------cccccccccchhhhc
Confidence 68999999999999999999999999999999999999999999999999999764321 234677777665555
Q ss_pred ccCCCCccccccccccccccccceeccccee
Q psy8311 141 YNFMSPTFCDHCGSLLYGLFRQGLKCEELQV 171 (254)
Q Consensus 141 ~~~~~pt~C~~C~~~i~gl~kqgl~C~~C~~ 171 (254)
.....|.+...|.+.|+ +.|+..++..+
T Consensus 281 ~~~~vP~iv~~~i~~le---~~gl~~eGIfR 308 (463)
T 3cxl_A 281 HTTKRPMVVDMCIREIE---SRGLNSEGLYR 308 (463)
T ss_dssp HTCSSCHHHHHHHHHHH---HHCSCSTTTTT
T ss_pred cCCCCCeeHHHHHHHHH---hcCCCCCceeE
Confidence 55667888888877763 23444444443
No 30
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=99.07 E-value=9.5e-11 Score=75.33 Aligned_cols=44 Identities=25% Similarity=0.615 Sum_probs=39.9
Q ss_pred CCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccc
Q psy8311 62 KGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLL 110 (254)
Q Consensus 62 ~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~ 110 (254)
.+|.|..+++. +++|++|+++|| |||+|++|++++|++|...++
T Consensus 3 i~HrF~~~t~~-~t~C~~C~k~i~----~G~kC~~Ck~~cH~kC~~~vp 46 (49)
T 1kbe_A 3 VTHRFSTKSWL-SQVCNVCQKSMI----FGVKCKHCRLKCHNKCTKEAP 46 (49)
T ss_dssp CCCCEEEECCS-SCCCSSSCCSSC----CEEEETTTTEEESSSCTTTSC
T ss_pred CCcccCccCCC-CcCccccCceeE----CcCCCCCCCCccchhhcCcCC
Confidence 47999999887 599999999999 799999999999999998654
No 31
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=99.05 E-value=5.9e-11 Score=80.00 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=48.4
Q ss_pred CCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCccc
Q psy8311 195 IDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEK 248 (254)
Q Consensus 195 ~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~ 248 (254)
...+|.|++.++..|++|++|++.++ +++||++|.+|++.||++|.++++.++
T Consensus 5 ~~~~H~F~~kt~~~~~~C~~Cg~~i~-~gkq~~kC~dC~~~cH~~C~~~~~~~C 57 (61)
T 4b6d_A 5 SMRLHDFVSKTVIKPESCVPCGKRIK-FGKLSLKCRDCRVVSHPECRDRCPLPC 57 (61)
T ss_dssp CBCCCCEEEEECCSCEECTTTCCEEC-TTCEEEEESSSSCEECGGGGGGSCSSC
T ss_pred cccceeEEeeeccCCcccccccCEEE-EeeEeeECCCCCCeEchhHhhcCCCCC
Confidence 35789999999999999999999875 779999999999999999999998776
No 32
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=99.04 E-value=1.7e-10 Score=74.12 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=41.6
Q ss_pred CCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCc
Q psy8311 196 DVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSD 246 (254)
Q Consensus 196 ~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~ 246 (254)
.++|+|...++. +++|++|+++|| ||++|.+|++++|.+|.+.+|+
T Consensus 2 ~i~HrF~~~t~~-~t~C~~C~k~i~----~G~kC~~Ck~~cH~kC~~~vp~ 47 (49)
T 1kbe_A 2 SVTHRFSTKSWL-SQVCNVCQKSMI----FGVKCKHCRLKCHNKCTKEAPA 47 (49)
T ss_dssp CCCCCEEEECCS-SCCCSSSCCSSC----CEEEETTTTEEESSSCTTTSCC
T ss_pred CCCcccCccCCC-CcCccccCceeE----CcCCCCCCCCccchhhcCcCCC
Confidence 468999999987 599999999998 6899999999999999998774
No 33
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.93 E-value=4.2e-10 Score=107.90 Aligned_cols=59 Identities=32% Similarity=0.735 Sum_probs=50.6
Q ss_pred ecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCCCCCC
Q psy8311 60 QVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGRE 119 (254)
Q Consensus 60 ~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~~~~ 119 (254)
..++|.|+.++|.+|++|++|+++|||+.+|||+|..|++++|++|...+ ..|++....
T Consensus 515 ~~~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~~~~~~ 573 (587)
T 3ky9_A 515 TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCGRHGQD 573 (587)
T ss_dssp TGGGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC------
T ss_pred cccCCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCCCCCcc
Confidence 35799999999999999999999999999999999999999999999999 589876543
No 34
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.85 E-value=1.3e-09 Score=99.75 Aligned_cols=58 Identities=33% Similarity=0.701 Sum_probs=50.5
Q ss_pred ecCCCeEEEEeecCCccCcccccccCcccccceeccccceEEccccccccccccCCCCC
Q psy8311 60 QVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGR 118 (254)
Q Consensus 60 ~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~~~ 118 (254)
...+|.|..+++..|++|.+|+.++||+.+||++|..|++++|++|...++. |+....
T Consensus 343 ~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~-C~~~~~ 400 (406)
T 2vrw_B 343 TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPP-CGRHGQ 400 (406)
T ss_dssp TGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCC-C-----
T ss_pred cCCCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCC-CCCCch
Confidence 3578999999999999999999999999999999999999999999999995 986653
No 35
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=98.44 E-value=5.6e-08 Score=90.59 Aligned_cols=54 Identities=26% Similarity=0.601 Sum_probs=48.7
Q ss_pred CCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCccc
Q psy8311 195 IDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSDEK 248 (254)
Q Consensus 195 ~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~ 248 (254)
...+|.|...++..|++|++|++++||+..||++|..|+++||++|...++..+
T Consensus 206 iv~~h~f~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~vp~~C 259 (463)
T 3cxl_A 206 YEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC 259 (463)
T ss_dssp -CBCCCEEEECCSSCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTSCSBC
T ss_pred cCCCcceEEeecCCCCcchhhhhhhhhHHhcCeeccccCccccccccccccccc
Confidence 457899999999999999999999999999999999999999999987776543
No 36
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=98.42 E-value=7.6e-08 Score=68.73 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=52.0
Q ss_pred cccCCCCCCCcchhhhhhccccccccccccccCCCCcccccccccccccc-ccceecccceeeeeeeeeeeEEee
Q psy8311 111 TKCSGSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLF-RQGLKCEELQVVDLLYEIYEVIVF 184 (254)
Q Consensus 111 ~~C~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~pt~C~~C~~~i~gl~-kqgl~C~~C~~~~h~~~~~~~~~~ 184 (254)
.+|++.++++.....+.+.-...+.|+|.+.|++..++|.+|.+.+.+.. .+|++|.||++++|.. |.+.+..
T Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~H~WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~-C~~~~~~ 76 (84)
T 1r79_A 3 SGSSGTTLASIGKDIIEDADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTS-CKESLLT 76 (84)
T ss_dssp CCCCCCCCCCCCCCCCCCSSCCCBCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHH-HHHHCCS
T ss_pred CCccceecccccccccccCCCccceeeEEccCCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHH-HHHhccC
Confidence 46777665543222222223456899999999999999999999987643 4899999999999854 4544433
No 37
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.32 E-value=2.3e-07 Score=88.85 Aligned_cols=52 Identities=29% Similarity=0.540 Sum_probs=48.8
Q ss_pred cCCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCC
Q psy8311 194 KIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLS 245 (254)
Q Consensus 194 ~~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~ 245 (254)
....+|.|....+..|++|++|+.++||+..||++|..|+++||++|...++
T Consensus 514 ~~~~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v~ 565 (587)
T 3ky9_A 514 ATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP 565 (587)
T ss_dssp TTGGGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGSC
T ss_pred ccccCCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhcCC
Confidence 3467899999999999999999999999999999999999999999999884
No 38
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.26 E-value=3.6e-07 Score=83.44 Aligned_cols=52 Identities=29% Similarity=0.512 Sum_probs=49.0
Q ss_pred CCCcceeeeccCCCCCccccccccccccccceEeccccCccccCCCccCCCc
Q psy8311 195 IDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSD 246 (254)
Q Consensus 195 ~~~~H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~ 246 (254)
...+|.|...++..|++|.+|+.++||+.+||++|..|++++|++|...++.
T Consensus 343 ~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~ 394 (406)
T 2vrw_B 343 TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPP 394 (406)
T ss_dssp TGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCC
T ss_pred cCCCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCC
Confidence 4578999999999999999999999999999999999999999999999884
No 39
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=92.77 E-value=0.043 Score=39.13 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=36.0
Q ss_pred eecC-CCeEEEEeecCCccCcccccccCcccccceeccccceEEcccccccc
Q psy8311 59 HQVK-GHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKL 109 (254)
Q Consensus 59 ~~~~-~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~ 109 (254)
+..- .|.+..... .+.+|+.|.+..-| ..|.|..|++.+|..|+..-
T Consensus 32 Hp~Hp~H~L~L~~~-~~~~C~~C~~~~~~---~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 32 HVLHEEHELELTRV-QVYTCDKCEEEGTI---WSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CSTTTTSCEEEECC-SSCCCTTTSCCCCS---CEEECTTTCCCCCHHHHHCS
T ss_pred CCCCCCCccEEeeC-CCeEeCCCCCcCCC---cEEEcCCCCCeEcHHhcCCC
Confidence 3344 488887543 37899999998654 46999999999999998543
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.45 E-value=0.47 Score=32.45 Aligned_cols=35 Identities=31% Similarity=0.706 Sum_probs=29.6
Q ss_pred ecCCccCcccccccCcccccceeccccceEEcccccccc
Q psy8311 71 FRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKL 109 (254)
Q Consensus 71 ~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~ 109 (254)
......|.+|.+++. +|.+|..|+..+|..|+.+.
T Consensus 12 ~~~i~~C~IC~~~i~----~g~~C~~C~h~fH~~Ci~kW 46 (74)
T 2ct0_A 12 PDAVKICNICHSLLI----QGQSCETCGIRMHLPCVAKY 46 (74)
T ss_dssp SSSSCBCSSSCCBCS----SSEECSSSCCEECHHHHHHH
T ss_pred cCCCCcCcchhhHcc----cCCccCCCCchhhHHHHHHH
Confidence 345778999999885 78999999999999998654
No 41
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=79.01 E-value=0.79 Score=32.39 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=30.9
Q ss_pred ceeeeccCCCCCccccccccccccccceEeccccCccccCCCccC
Q psy8311 199 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPR 243 (254)
Q Consensus 199 H~f~~~~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~ 243 (254)
|....... .+-+|+.|+....+. -|+|..|++..|..|...
T Consensus 38 H~L~L~~~-~~~~C~~C~~~~~~~---~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 38 HELELTRV-QVYTCDKCEEEGTIW---SYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCEEEECC-SSCCCTTTSCCCCSC---EEECTTTCCCCCHHHHHC
T ss_pred CccEEeeC-CCeEeCCCCCcCCCc---EEEcCCCCCeEcHHhcCC
Confidence 65555433 367899999875443 489999999999999764
No 42
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=74.64 E-value=1.1 Score=37.60 Aligned_cols=33 Identities=33% Similarity=0.790 Sum_probs=29.1
Q ss_pred CCccCcccccccCcccccceeccccceEEcccccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKL 109 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~ 109 (254)
....|.+|.+++- +|.+|..|+..+|..|....
T Consensus 179 ~i~~C~iC~~iv~----~g~~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 179 AVKICNICHSLLI----QGQSCETCGIRMHLPCVAKY 211 (238)
T ss_dssp TCCBCTTTCSBCS----SCEECSSSCCEECHHHHHHH
T ss_pred CCCcCcchhhHHh----CCcccCccChHHHHHHHHHH
Confidence 4788999999886 89999999999999998654
No 43
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.47 E-value=14 Score=26.62 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=47.1
Q ss_pred CccCcccccccCcccccceeccccceEEccccccccccccCCCCCCCcchhhhhhccccccccccccccCCCCccccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFCDHCG 153 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~pt~C~~C~ 153 (254)
-.+|.+|++. |-..+-+.|..|...+|..|+.....+ .. ...|.=. .=.+|.+|+
T Consensus 7 ~~~C~~C~~~--g~~~~ll~C~~C~~~~H~~Cl~~~~~~-----~~---------------~~~W~C~---~C~~C~~C~ 61 (111)
T 2ysm_A 7 GANCAVCDSP--GDLLDQFFCTTCGQHYHGMCLDIAVTP-----LK---------------RAGWQCP---ECKVCQNCK 61 (111)
T ss_dssp CSCBTTTCCC--CCTTTSEECSSSCCEECTTTTTCCCCT-----TT---------------STTCCCT---TTCCCTTTC
T ss_pred CCCCcCCCCC--CCCcCCeECCCCCCCcChHHhCCcccc-----cc---------------ccCccCC---cCCcccccC
Confidence 4679999775 312234899999999999998653211 00 0012100 112577777
Q ss_pred cccccccccceecccceeeeeeee
Q psy8311 154 SLLYGLFRQGLKCEELQVVDLLYE 177 (254)
Q Consensus 154 ~~i~gl~kqgl~C~~C~~~~h~~~ 177 (254)
..-. ..+.+.|..|....|..+
T Consensus 62 ~~~~--~~~ll~Cd~C~~~yH~~C 83 (111)
T 2ysm_A 62 QSGE--DSKMLVCDTCDKGYHTFC 83 (111)
T ss_dssp CCSC--CTTEEECSSSCCEEEGGG
T ss_pred ccCC--CCCeeECCCCCcHHhHHh
Confidence 6532 246789999999988554
No 44
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.46 E-value=7.9 Score=25.12 Aligned_cols=35 Identities=20% Similarity=0.543 Sum_probs=25.5
Q ss_pred CccCcccccccCcccccceeccccceEEccccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDK 108 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~ 108 (254)
-.+|.+|+..-..-..+-+.|..|...+|..|..-
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC
Confidence 45789998642212246789999999999999753
No 45
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.17 E-value=5 Score=27.43 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCccccccccccccccceEeccccCccccCCCccCCCc
Q psy8311 209 PTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSD 246 (254)
Q Consensus 209 pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~ 246 (254)
-..|..|...++.++..|..|..|+..+=.+|.-..+.
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECST
T ss_pred ccchhhhCccccccccCCCcCcccChhhcccccccCCC
Confidence 35699999999988889999999999999999765443
No 46
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.46 E-value=9.5 Score=26.56 Aligned_cols=34 Identities=29% Similarity=0.728 Sum_probs=25.2
Q ss_pred CccCcccccccCcccccceeccccceEEcccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
-.+|.+|...-..-..+-+.|..|...+|..|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC
Confidence 4689999874221123678999999999999974
No 47
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=51.38 E-value=23 Score=22.54 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=33.5
Q ss_pred cCCCCCccccccc--cccccccceEeccccCccccCCCccCCCccccc
Q psy8311 205 NFMSPTFCDHCGS--LLYGLFRQGLKCEVCFSFCNTFSPPRLSDEKAL 250 (254)
Q Consensus 205 ~~~~pt~C~~C~~--~~~g~~~qg~~C~~C~~~~H~~C~~~~~~~~~~ 250 (254)
.+.....|-.|+. ++.......+.|..||+.+-++=++..+.=+++
T Consensus 7 ~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F 54 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTF 54 (58)
T ss_dssp CCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCS
T ss_pred hccccccCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCCccccc
Confidence 4555557999976 334555678999999999998888776654444
No 48
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=48.71 E-value=9.7 Score=25.45 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=30.7
Q ss_pred cCCCCCccccccccccccccceEeccccCccccCCCcc--CCCcccc
Q psy8311 205 NFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPP--RLSDEKA 249 (254)
Q Consensus 205 ~~~~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~--~~~~~~~ 249 (254)
......+|.+|+..-.....+-+.|..|....|..|.. .++...|
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W 58 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQW 58 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCc
Confidence 33456789999875322234568899999999999975 3444444
No 49
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.00 E-value=10 Score=25.91 Aligned_cols=35 Identities=23% Similarity=0.553 Sum_probs=29.6
Q ss_pred CccCcccccccCcccccceeccccceEEccccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDK 108 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~ 108 (254)
--.|..|.+.|--|+..|..|.+|+..+=++|...
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~ 59 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ 59 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE
T ss_pred ccchhhhCccccccccCCCcCcccChhhccccccc
Confidence 45799999998878899999999998888888643
No 50
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=47.26 E-value=21 Score=21.65 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=29.8
Q ss_pred ccccccc-cc-cccccceEeccccCccccCCCccCCCccccc
Q psy8311 211 FCDHCGS-LL-YGLFRQGLKCEVCFSFCNTFSPPRLSDEKAL 250 (254)
Q Consensus 211 ~C~~C~~-~~-~g~~~qg~~C~~C~~~~H~~C~~~~~~~~~~ 250 (254)
.|-.|+. .+ +....+.+.|..||+..-.+=++..+.-+++
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f 48 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF 48 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCcccccccccCCccccc
Confidence 5889987 44 4555688999999999888877766554444
No 51
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=43.46 E-value=10 Score=25.37 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=27.4
Q ss_pred cCCccCcccccccCcccccceeccccceEEccccccc
Q psy8311 72 RQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDK 108 (254)
Q Consensus 72 ~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~ 108 (254)
....+|.+|++.=..-..+-+.|+.|...+|..|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC
Confidence 4567899998642112346789999999999999754
No 52
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.27 E-value=18 Score=22.66 Aligned_cols=29 Identities=38% Similarity=0.909 Sum_probs=24.1
Q ss_pred CccCcccccccCcccccceeccccceEEcccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
..+|.+|++. | .-+.|..|...+|..|..
T Consensus 9 ~~~C~vC~~~--g---~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 9 EDFCSVCRKS--G---QLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CCSCSSSCCS--S---CCEECSSSSCEECSSSSS
T ss_pred CCCCccCCCC--C---eEEEcCCCCcceECccCC
Confidence 5679999873 3 678999999999999975
No 53
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=41.07 E-value=17 Score=23.13 Aligned_cols=29 Identities=38% Similarity=0.909 Sum_probs=23.9
Q ss_pred CccCcccccccCcccccceeccccceEEcccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
-.+|.+|++. | .-+.|+.|...+|..|..
T Consensus 5 ~~~C~vC~~~--g---~ll~Cd~C~~~fH~~Cl~ 33 (60)
T 2puy_A 5 EDFCSVCRKS--G---QLLMCDTCSRVYHLDCLD 33 (60)
T ss_dssp CSSCTTTCCC--S---SCEECSSSSCEECGGGSS
T ss_pred CCCCcCCCCC--C---cEEEcCCCCcCEECCcCC
Confidence 4579999873 3 678999999999999975
No 54
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.96 E-value=14 Score=22.51 Aligned_cols=30 Identities=27% Similarity=0.606 Sum_probs=22.9
Q ss_pred cCcccccccCcccccceeccccceEEcccccc
Q psy8311 76 FCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 76 ~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
+|.+|++. |-..+-+.|+.|...+|-.|..
T Consensus 2 ~C~vC~~~--~~~~~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCTTTCCS--SCCSCCEECTTTCCEECHHHHC
T ss_pred CCCCCCCC--CCCCCEEECCCCChhhCcccCC
Confidence 58888763 2233668899999999999975
No 55
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=36.90 E-value=12 Score=26.02 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=28.2
Q ss_pred CCCccccccccccccccceEeccccCccccCCCccC---CCccccc
Q psy8311 208 SPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPR---LSDEKAL 250 (254)
Q Consensus 208 ~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~---~~~~~~~ 250 (254)
..-.|++|..+--+ .-+.|..|+...|..|... +..+.|.
T Consensus 14 ~D~~C~VC~~~t~~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~ 56 (89)
T 1wil_A 14 NDEMCDVCEVWTAE---SLFPCRVCTRVFHDGCLRRMGYIQGDSAA 56 (89)
T ss_dssp CSCCCTTTCCCCSS---CCSSCSSSSSCCCHHHHHHHTSCCCCCCC
T ss_pred CCcccCcccccccc---ceeccccccccccHhhcccccccccHHHH
Confidence 45679999875432 3478999999999999653 4444443
No 56
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=36.64 E-value=21 Score=23.17 Aligned_cols=29 Identities=34% Similarity=0.720 Sum_probs=24.1
Q ss_pred CccCcccccccCcccccceeccccceEEcccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
-.+|.+|++. | .-+.|+.|...+|..|+.
T Consensus 8 ~~~C~vC~~~--g---~ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 8 EDECAVCRDG--G---ELICCDGCPRAFHLACLS 36 (66)
T ss_dssp CCSBSSSSCC--S---SCEECSSCCCEECTTTSS
T ss_pred CCCCccCCCC--C---CEEEcCCCChhhcccccC
Confidence 5689999863 3 678999999999999976
No 57
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=36.61 E-value=15 Score=23.53 Aligned_cols=29 Identities=38% Similarity=0.878 Sum_probs=23.5
Q ss_pred CccCcccccccCcccccceeccccceEEcccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
-.+|.+|++ .| +-+.|..|...+|..|..
T Consensus 9 ~~~C~vC~~--~g---~ll~Cd~C~~~fH~~Cl~ 37 (61)
T 1mm2_A 9 MEFCRVCKD--GG---ELLCCDTCPSSYHIHCLN 37 (61)
T ss_dssp CSSCTTTCC--CS---SCBCCSSSCCCBCSSSSS
T ss_pred CCcCCCCCC--CC---CEEEcCCCCHHHcccccC
Confidence 457999986 22 678999999999999975
No 58
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=35.52 E-value=14 Score=23.75 Aligned_cols=31 Identities=32% Similarity=0.785 Sum_probs=25.3
Q ss_pred CCccCcccccccCcccccceeccccceEEccccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDK 108 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~ 108 (254)
...+|.+|++ .| +-+.|..|...+|-.|...
T Consensus 10 ~~~~C~vC~~--~g---~ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQ--GG---EIILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSC--CS---SEEECSSSSCEEEHHHHCT
T ss_pred CCCCCccCCC--CC---cEEECCCCChhhhhhccCC
Confidence 4678999987 23 6789999999999999754
No 59
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.88 E-value=45 Score=21.29 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=26.3
Q ss_pred CCccccccccccccccceEeccccCccccCCCccC
Q psy8311 209 PTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPR 243 (254)
Q Consensus 209 pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~ 243 (254)
...|.+|+..-..-...-+.|..|....|..|..-
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC
Confidence 46799998753222246689999999999999873
No 60
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=33.14 E-value=16 Score=23.96 Aligned_cols=29 Identities=31% Similarity=0.699 Sum_probs=23.4
Q ss_pred CccCcccccccCcccccceeccccceEEcccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
...|.+|++- .+-+.|+.|...+|..|+.
T Consensus 12 ~~~C~vC~~~-----~~ll~Cd~C~~~~H~~Cl~ 40 (66)
T 2lri_C 12 GARCGVCGDG-----TDVLRCTHCAAAFHWRCHF 40 (66)
T ss_dssp TCCCTTTSCC-----TTCEECSSSCCEECHHHHC
T ss_pred CCCcCCCCCC-----CeEEECCCCCCceecccCC
Confidence 3569999752 3678999999999999974
No 61
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=32.87 E-value=9.9 Score=31.63 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=26.2
Q ss_pred CCccccccccccccccceEeccccCccccCCCccC
Q psy8311 209 PTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPR 243 (254)
Q Consensus 209 pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~ 243 (254)
...|..|.+.+. +|.+|..|+...|..|...
T Consensus 180 i~~C~iC~~iv~----~g~~C~~C~~~~H~~C~~~ 210 (238)
T 3nw0_A 180 VKICNICHSLLI----QGQSCETCGIRMHLPCVAK 210 (238)
T ss_dssp CCBCTTTCSBCS----SCEECSSSCCEECHHHHHH
T ss_pred CCcCcchhhHHh----CCcccCccChHHHHHHHHH
Confidence 567999988765 6899999999999999864
No 62
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.56 E-value=30 Score=24.24 Aligned_cols=34 Identities=21% Similarity=0.585 Sum_probs=25.3
Q ss_pred ecCCccCcccccccCcccccceeccccc---eEEccccccc
Q psy8311 71 FRQPTFCAFCKDFLWGFGKQGYQCQTCQ---TAVHKKCHDK 108 (254)
Q Consensus 71 ~~~p~~C~~C~~~i~g~~~qg~~C~~C~---~~~Hk~C~~~ 108 (254)
-..+.|| +|+..-.| .-+.|+.|. --+|-.|+..
T Consensus 23 ~~~~~yC-iC~~~~~g---~MI~CD~c~C~~eWfH~~CVgl 59 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYG---PMVACDNPACPFEWFHYGCVGL 59 (90)
T ss_dssp -CCSCCS-TTTCCCSS---SEECCCSSSCSCSCEETTTSSC
T ss_pred CCCCcEE-EeCCCCCC---CEEEecCCCCccccCcCccCCC
Confidence 3568899 89976555 467899966 6799999864
No 63
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.70 E-value=31 Score=25.98 Aligned_cols=37 Identities=24% Similarity=0.532 Sum_probs=30.1
Q ss_pred CCccCcccccccCcccccceeccccceEEcccccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKL 109 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~ 109 (254)
....|.+|..-+--+...|..|.+|+..+=++|...+
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 4678999998774456789999999999988887654
No 64
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.64 E-value=28 Score=26.87 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCccccccccccccccceEeccccCccccCCCccCCCc
Q psy8311 209 PTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRLSD 246 (254)
Q Consensus 209 pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~~~ 246 (254)
...|..|...+..+...|..|.+|+..+=++|...++.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 56799999988766678999999999999999755443
No 65
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=29.80 E-value=37 Score=21.58 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=25.2
Q ss_pred CCccCcccccccCcccccceeccccceEEccccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDK 108 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~ 108 (254)
...+|.+|+..-- -...-++|+.|..-+|..|+..
T Consensus 5 e~~~C~~C~~~~~-~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 5 SSGQCGACGESYA-ADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SCCCCSSSCCCCC-SSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCccC-CCCCEEEccCCCCCCCccccCc
Confidence 4678888876531 1123478999999999999754
No 66
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.71 E-value=33 Score=26.47 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=28.7
Q ss_pred CCccCcccccccCcccccceeccccceEEcccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
....|..|..-+--+...|..|.+|+..+=++|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc
Confidence 46789999987655567899999999999888874
No 67
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.53 E-value=35 Score=25.67 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCCccccccccccccccceEeccccCccccCCCccCC
Q psy8311 208 SPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPPRL 244 (254)
Q Consensus 208 ~pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~~~ 244 (254)
....|..|...++.+...|..|..|+..+=++|....
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 3467999999886566689999999999999997655
No 68
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=28.02 E-value=37 Score=21.57 Aligned_cols=33 Identities=30% Similarity=0.847 Sum_probs=24.9
Q ss_pred cCCccCcccccccCcccccceeccc--cc-eEEccccccc
Q psy8311 72 RQPTFCAFCKDFLWGFGKQGYQCQT--CQ-TAVHKKCHDK 108 (254)
Q Consensus 72 ~~p~~C~~C~~~i~g~~~qg~~C~~--C~-~~~Hk~C~~~ 108 (254)
..+.|| +|++.-.| .-+.|+. |. --+|-.|+..
T Consensus 7 ~e~~yC-~C~~~~~g---~mi~CD~~~C~~~wfH~~Cvgl 42 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYG---EMIGCDNPDCPIEWFHFACVDL 42 (59)
T ss_dssp -CCEET-TTTEECCS---EEEECSCTTCSSCEEETGGGTC
T ss_pred CCCcEE-ECCCCCCC---CeeEeeCCCCCCCCEecccCCc
Confidence 467899 89886544 4678999 77 4899999874
No 69
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=27.96 E-value=22 Score=21.80 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=21.6
Q ss_pred cccccccccc--cc-ccceEeccccCccccCCC
Q psy8311 211 FCDHCGSLLY--GL-FRQGLKCEVCFSFCNTFS 240 (254)
Q Consensus 211 ~C~~C~~~~~--g~-~~qg~~C~~C~~~~H~~C 240 (254)
.|..|+..+. .+ .+.|.+|..||+.+-.+=
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 4888888664 22 557899999999875443
No 70
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=27.90 E-value=44 Score=21.84 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=25.4
Q ss_pred CCccCcccccccCcccccceeccccceEEcccccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKL 109 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~~ 109 (254)
...+| +|+..-.| ..-++|+.|..-+|..|+...
T Consensus 18 ~~~~C-iC~~~~~~--~~MIqCd~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 18 GLVTC-FCMKPFAG--RPMIECNECHTWIHLSCAKIR 51 (68)
T ss_dssp TCCCS-TTCCCCTT--CCEEECTTTCCEEETTTTTCC
T ss_pred CceEe-ECCCcCCC--CCEEECCCCCccccccccCcC
Confidence 57788 88865432 345789999999999998643
No 71
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=27.71 E-value=15 Score=25.51 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=26.5
Q ss_pred CCccCcccccccCcccccceeccccceEEccccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDK 108 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~ 108 (254)
.-.+|.+|+..-..-..+-+.|+.|...+|..|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p 59 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 59 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC
Confidence 457899998642112346689999999999999753
No 72
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=26.90 E-value=43 Score=22.15 Aligned_cols=33 Identities=27% Similarity=0.805 Sum_probs=24.9
Q ss_pred cCCccCcccccccCcccccceeccc--cc-eEEccccccc
Q psy8311 72 RQPTFCAFCKDFLWGFGKQGYQCQT--CQ-TAVHKKCHDK 108 (254)
Q Consensus 72 ~~p~~C~~C~~~i~g~~~qg~~C~~--C~-~~~Hk~C~~~ 108 (254)
..+.|| +|++.-.| .-+.|.. |. -.+|-.|+..
T Consensus 14 ~~~~~C-~C~~~~~g---~MI~CD~~~C~~~wfH~~Cvgl 49 (71)
T 1wen_A 14 NEPTYC-LCHQVSYG---EMIGCDNPDCSIEWFHFACVGL 49 (71)
T ss_dssp TSCCCS-TTCCCSCS---SEECCSCSSCSCCCEETTTTTC
T ss_pred CCCCEE-ECCCCCCC---CEeEeeCCCCCCccEecccCCc
Confidence 457899 79886544 4678999 77 4899999864
No 73
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.76 E-value=43 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.736 Sum_probs=19.4
Q ss_pred CccCcccccccCcccccceeccccceEE
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAV 101 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~ 101 (254)
+..|..|++-+ ||. .+++|. |+..+
T Consensus 25 ~~rC~~C~kkv-gl~-~~f~Cr-Cg~~F 49 (85)
T 1wff_A 25 MKHCFLCGKKT-GLA-TSFECR-CGNNF 49 (85)
T ss_dssp CCBCSSSCCBC-SSS-SCEECT-TCCEE
T ss_pred CccchhhCCee-ccc-CCeEcC-CCCEe
Confidence 57899999874 443 689997 99876
No 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=25.88 E-value=27 Score=23.09 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=25.2
Q ss_pred CccCcccccccCcccccceeccccceEEccccccc
Q psy8311 74 PTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDK 108 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~~ 108 (254)
..+|.+|+..-.| ..-+.|+.|...+|-.|+..
T Consensus 18 ~~~C~~C~~~~~~--~~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 18 IWICPGCNKPDDG--SPMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp EECBTTTTBCCSS--CCEEECSSSSSEEEHHHHTC
T ss_pred CcCCCCCCCCCCC--CCEEEcCCCCcccccccCCC
Confidence 4679899876432 34578999999999999754
No 75
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.10 E-value=51 Score=22.67 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCccccccccccccccceEeccccCccccCCCcc
Q psy8311 209 PTFCDHCGSLLYGLFRQGLKCEVCFSFCNTFSPP 242 (254)
Q Consensus 209 pt~C~~C~~~~~g~~~qg~~C~~C~~~~H~~C~~ 242 (254)
..+|.+|+..-.....+-+.|..|....|..|..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC
Confidence 3579999875321124568899999999999986
No 76
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.90 E-value=45 Score=21.40 Aligned_cols=33 Identities=27% Similarity=0.812 Sum_probs=24.8
Q ss_pred cCCccCcccccccCcccccceeccc--cc-eEEccccccc
Q psy8311 72 RQPTFCAFCKDFLWGFGKQGYQCQT--CQ-TAVHKKCHDK 108 (254)
Q Consensus 72 ~~p~~C~~C~~~i~g~~~qg~~C~~--C~-~~~Hk~C~~~ 108 (254)
..+.|| +|++.-.| .-+.|+. |. --+|-.|+..
T Consensus 9 ~e~~yC-~C~~~~~g---~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYG---EMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp -CCEET-TTTEECCS---EEEECSCTTCSSCEEETGGGTC
T ss_pred CCCcEE-ECCCCCCC---CeeeeeCCCCCcccEecccCCc
Confidence 467899 89886544 4678999 55 7899999874
No 77
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.38 E-value=43 Score=23.45 Aligned_cols=33 Identities=27% Similarity=0.805 Sum_probs=25.3
Q ss_pred cCCccCcccccccCcccccceeccc--cc-eEEccccccc
Q psy8311 72 RQPTFCAFCKDFLWGFGKQGYQCQT--CQ-TAVHKKCHDK 108 (254)
Q Consensus 72 ~~p~~C~~C~~~i~g~~~qg~~C~~--C~-~~~Hk~C~~~ 108 (254)
..+.|| +|++.-.| .-+.|+. |. --+|-.|+..
T Consensus 34 ~e~~yC-iC~~~~~g---~MI~CD~~dC~~~WfH~~CVgl 69 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG---EMIGCDNPDCSIEWFHFACVGL 69 (91)
T ss_dssp CCCBCS-TTCCBCCS---CCCCCSCSSCSCCCCCSTTTTC
T ss_pred CCCcEE-ECCCCCCC---CEeEecCCCCCCCCEecccCCc
Confidence 467899 99986555 4678999 76 4799999864
No 78
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.28 E-value=38 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.558 Sum_probs=21.6
Q ss_pred CccCcccccccCccccc-----ceeccccceEEc
Q psy8311 74 PTFCAFCKDFLWGFGKQ-----GYQCQTCQTAVH 102 (254)
Q Consensus 74 p~~C~~C~~~i~g~~~q-----g~~C~~C~~~~H 102 (254)
..||..|+++|.--... -|.|..|++...
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 56999999998643222 389999998764
No 79
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=23.10 E-value=51 Score=20.89 Aligned_cols=33 Identities=27% Similarity=0.805 Sum_probs=24.1
Q ss_pred cCCccCcccccccCcccccceeccc--cc-eEEccccccc
Q psy8311 72 RQPTFCAFCKDFLWGFGKQGYQCQT--CQ-TAVHKKCHDK 108 (254)
Q Consensus 72 ~~p~~C~~C~~~i~g~~~qg~~C~~--C~-~~~Hk~C~~~ 108 (254)
..+.+| +|++.-.| .-+.|.. |. -.+|-.|+..
T Consensus 8 ~e~~~C-~C~~~~~g---~mi~CD~cdC~~~wfH~~Cvgl 43 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYG---EMIGCDNPDCSIEWFHFACVGL 43 (60)
T ss_dssp -CCEET-TTTEECCS---EEEECSCTTCSSCEEETGGGTC
T ss_pred CCCCEE-ECCCcCCC---CEEEeCCCCCCCceEehhcCCC
Confidence 457889 79886444 4678999 66 5899999873
No 80
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.73 E-value=42 Score=21.69 Aligned_cols=21 Identities=38% Similarity=1.108 Sum_probs=16.5
Q ss_pred CccCcccccc-cCcccccceecccc
Q psy8311 74 PTFCAFCKDF-LWGFGKQGYQCQTC 97 (254)
Q Consensus 74 p~~C~~C~~~-i~g~~~qg~~C~~C 97 (254)
+..|+.|... |.| .-|+|..|
T Consensus 11 ~~~Cd~C~~~pi~G---~RykC~~C 32 (63)
T 2e5r_A 11 PVECSYCHSESMMG---FRYRCQQC 32 (63)
T ss_dssp CSCCSSSCCCSSCS---CEEEESSC
T ss_pred CCCCcCCCCcceec---ceEEecCC
Confidence 4789999975 777 45788877
No 81
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=21.52 E-value=63 Score=23.26 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=44.6
Q ss_pred ccCccccccc-----CcccccceeccccceEEccccccccccccCCCCCCCcchhhhhhccccccccccccccCCCCccc
Q psy8311 75 TFCAFCKDFL-----WGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFC 149 (254)
Q Consensus 75 ~~C~~C~~~i-----~g~~~qg~~C~~C~~~~Hk~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~pt~C 149 (254)
.+|++|..-- .|-...-+.|..|+..+|..|...-... ...++ .-.|.=. .=..|
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~----------~~~~~-------~~~W~C~---~C~~C 61 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNM----------TEAVK-------TYKWQCI---ECKSC 61 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHH----------HHHHH-------HTTCCCG---GGCCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhh----------hhccC-------CCccCcc---ccCcc
Confidence 4688885432 1222345889999999999997532110 00000 0012100 01247
Q ss_pred cccccccccccccceecccceeeeeeee
Q psy8311 150 DHCGSLLYGLFRQGLKCEELQVVDLLYE 177 (254)
Q Consensus 150 ~~C~~~i~gl~kqgl~C~~C~~~~h~~~ 177 (254)
.+|+.... ..+.+.|+.|....|..+
T Consensus 62 ~~C~~~~~--~~~ll~Cd~C~~~yH~~C 87 (114)
T 2kwj_A 62 ILCGTSEN--DDQLLFCDDCDRGYHMYC 87 (114)
T ss_dssp TTTTCCTT--TTTEEECSSSCCEEETTT
T ss_pred CcccccCC--CCceEEcCCCCccccccc
Confidence 77776432 235788999998887543
No 82
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.98 E-value=57 Score=22.69 Aligned_cols=30 Identities=30% Similarity=0.749 Sum_probs=24.5
Q ss_pred CCccCcccccccCcccccceeccccceEEcccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
...+|.+|++- | +-+.|+.|...+|-.|..
T Consensus 24 n~~~C~vC~~~--g---~LL~CD~C~~~fH~~Cl~ 53 (88)
T 1fp0_A 24 SATICRVCQKP--G---DLVMCNQCEFCFHLDCHL 53 (88)
T ss_dssp SSSCCSSSCSS--S---CCEECTTSSCEECTTSSS
T ss_pred CCCcCcCcCCC--C---CEEECCCCCCceecccCC
Confidence 35789999863 2 678999999999999974
No 83
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.89 E-value=59 Score=22.57 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=25.0
Q ss_pred CCccCcccccccCcccccceeccccceEEcccccc
Q psy8311 73 QPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107 (254)
Q Consensus 73 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~Hk~C~~ 107 (254)
...+|.+|+.. +-..+-+.|..|...+|..|+.
T Consensus 15 ~~~~C~vC~~~--~~~~~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 15 DSYICQVCSRG--DEDDKLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCSSSCCS--GGGGGCEECTTTCCEECSSSSS
T ss_pred CCCCCccCCCc--CCCCCEEEcCCCCchhccccCC
Confidence 34579999864 2223568999999999999975
No 84
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.14 E-value=46 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=19.4
Q ss_pred CccccccccccccccceEeccccCccc
Q psy8311 210 TFCDHCGSLLYGLFRQGLKCEVCFSFC 236 (254)
Q Consensus 210 t~C~~C~~~~~g~~~qg~~C~~C~~~~ 236 (254)
-.|..|+...........+|..|+..+
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred EECCCCCCeeecCCCCceECCCCCcEE
Confidence 468888887653335678999998765
Done!