RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8311
(254 letters)
>gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1
domain). This domain is also known as the Protein
kinase C conserved region 1 (C1) domain.
Length = 53
Score = 68.2 bits (167), Expect = 2e-15
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
H+FV + F+ PTFC C +FLWG GKQG +C C VHK+CH + +C
Sbjct: 1 HHFVHRTFKSPTFCDHCGEFLWGLGKQGLKCSWCGLNVHKRCHSLVPPEC 50
Score = 50.5 bits (121), Expect = 7e-09
Identities = 21/34 (61%), Positives = 23/34 (67%)
Query: 199 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
H F F SPTFCDHCG L+GL +QGLKC C
Sbjct: 1 HHFVHRTFKSPTFCDHCGEFLWGLGKQGLKCSWC 34
Score = 47.4 bits (113), Expect = 7e-08
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 136 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVV 172
H F F SPTFCDHCG L+GL +QGLKC +
Sbjct: 1 HHFVHRTFKSPTFCDHCGEFLWGLGKQGLKCSWCGLN 37
>gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1) .
Cysteine-rich zinc binding domain. Some members of this
domain family bind phorbol esters and diacylglycerol,
some are reported to bind RasGTP. May occur in tandem
arrangement. Diacylglycerol (DAG) is a second messenger,
released by activation of Phospholipase D. Phorbol
Esters (PE) can act as analogues of DAG and mimic its
downstream effects in, for example, tumor promotion.
Protein Kinases C are activated by DAG/PE, this
activation is mediated by their N-terminal conserved
region (C1). DAG/PE binding may be phospholipid
dependent. C1 domains may also mediate DAG/PE signals in
chimaerins (a family of Rac GTPase activating proteins),
RasGRPs (exchange factors for Ras/Rap1), and Munc13
isoforms (scaffolding proteins involved in exocytosis).
Length = 50
Score = 63.3 bits (154), Expect = 1e-13
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
H FV K F +PTFC C+ +WG KQG +C C+ HKKC DK+ C
Sbjct: 1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVPPSC 50
Score = 47.1 bits (112), Expect = 1e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 199 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
HRF +F PTFCD C ++GLF+QGL+C C
Sbjct: 1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWC 34
Score = 44.4 bits (105), Expect = 1e-06
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 136 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVV 172
HRF +F PTFCD C ++GLF+QGL+C +V
Sbjct: 1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVK 37
>gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains
(Cysteine-rich domains). Some bind phorbol esters and
diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Length = 50
Score = 59.0 bits (143), Expect = 5e-12
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
H V + F +PTFC C+ +WG KQG +C C+ HKKC DK+ C
Sbjct: 1 HKHVFRTFTKPTFCCVCRKSIWGSFKQGLRCSECKVKCHKKCADKVPKAC 50
Score = 40.5 bits (95), Expect = 2e-05
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 199 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
H+ F PTFC C ++G F+QGL+C C
Sbjct: 1 HKHVFRTFTKPTFCCVCRKSIWGSFKQGLRCSEC 34
Score = 37.1 bits (86), Expect = 4e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 136 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVV 172
H+ F PTFC C ++G F+QGL+C E +V
Sbjct: 1 HKHVFRTFTKPTFCCVCRKSIWGSFKQGLRCSECKVK 37
>gnl|CDD|238994 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions as a Na+/H+
antiporter.
Length = 169
Score = 29.0 bits (66), Expect = 1.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 144 MSPTFCDHCGSLLYGLFRQGLK--CEELQVVDLLYEI 178
MS C HCG +Y + G + EEL V LL +I
Sbjct: 130 MSYFVCPHCGKKIYIFGKGGGEKLAEELG-VPLLGKI 165
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 29.6 bits (67), Expect = 2.0
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 11/42 (26%)
Query: 24 HQRSSSDSDLPLVDE----ENVF-GRAITRRRGAIKHQKVHQ 60
HQ +L L+ + EN+F GR R G I +K++
Sbjct: 85 HQ------ELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA 120
>gnl|CDD|212891 cd11958, SH3_RUSC1, Src homology 3 domain of RUN and SH3
domain-containing protein 1. RUSC1, also called NESCA
(New molecule containing SH3 at the carboxy-terminus),
is highly expressed in the brain and is translocated to
the nuclear membrane from the cytoplasm upon stimulation
with neurotrophin. It plays a role in facilitating
neurotrophin-dependent neurite outgrowth. It also
interacts with NEMO (or IKKgamma) and may function in
NEMO-mediated activation of NF-kB. RUSC proteins are
adaptor proteins consisting of RUN, leucine zipper, and
SH3 domains. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 51
Score = 26.7 bits (59), Expect = 2.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 147 TFCDHCGSLLYGLFRQGLKCEELQVVD 173
CDH GS FR+G EELQV+
Sbjct: 4 ALCDHAGSESQLSFRKG---EELQVLG 27
>gnl|CDD|150725 pfam10083, DUF2321, Uncharacterized protein conserved in bacteria
(DUF2321). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 158
Score = 27.6 bits (61), Expect = 4.8
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 3 PTFCDHCGSLLSSVTSRLRAAHQRSSSDSDLPLVDEENVFGRAIT 47
P++C +CG +L AA++ D +L DE+ F +
Sbjct: 68 PSYCHNCGKPFPWTKRKLEAANELIEEDDNLS-PDEKEQFQADLP 111
>gnl|CDD|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
This family is the PRTRC system ThiF family protein.
Length = 244
Score = 27.7 bits (62), Expect = 5.9
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 206 FMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCN 237
F++ +LL+ LFR+G + E F N
Sbjct: 202 FINQAIAVFAMNLLWKLFRKG-RLEFHGVFVN 232
>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 116
Score = 26.8 bits (60), Expect = 6.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 33 LPLVDEENVFGRAITRR 49
LP+VD++ +F ITRR
Sbjct: 95 LPVVDDDGIFIGIITRR 111
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 27.4 bits (61), Expect = 6.8
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 94 CQTCQ-TAVHKKCHDKLLTKCSGSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFCDHC 152
C+TC T K KC G+G+ I V +F+S T CD C
Sbjct: 151 CETCNGTGAKPGTSPKTCDKCGGTGQ-------------IRVQRNTPLGSFVSTTTCDKC 197
Query: 153 G 153
G
Sbjct: 198 G 198
>gnl|CDD|218767 pfam05827, ATP-synt_S1, Vacuolar ATP synthase subunit S1
(ATP6S1). This family consists of eukaryotic vacuolar
ATP synthase subunit S1 proteins.
Length = 277
Score = 27.0 bits (60), Expect = 8.7
Identities = 9/28 (32%), Positives = 9/28 (32%)
Query: 14 SSVTSRLRAAHQRSSSDSDLPLVDEENV 41
L A SSS LP V E
Sbjct: 65 KDNFPNLEAYLTGSSSALRLPYVVNEVE 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.468
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,816,648
Number of extensions: 1180501
Number of successful extensions: 1409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1409
Number of HSP's successfully gapped: 33
Length of query: 254
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 159
Effective length of database: 6,723,972
Effective search space: 1069111548
Effective search space used: 1069111548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.1 bits)