RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8311
(254 letters)
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 178 bits (452), Expect = 6e-52
Identities = 62/142 (43%), Positives = 83/142 (58%), Gaps = 7/142 (4%)
Query: 30 DSDLPLVDEENVFGRAITRRRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGK 89
D E R+GA++ + VH+VK H F A+FF+QPTFC+ C DF+WGFGK
Sbjct: 4 DPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGK 63
Query: 90 QGYQCQTCQTAVHKKCHDKLLTKCSGSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFC 149
QG+QCQ C VHK+CH+ + C G+ + H+FK + + SPTFC
Sbjct: 64 QGFQCQVCSFVVHKRCHEFVTFSCPGADKGP-------ASDDPRSKHKFKIHTYSSPTFC 116
Query: 150 DHCGSLLYGLFRQGLKCEELQV 171
DHCGSLLYGL QG+KC+ +
Sbjct: 117 DHCGSLLYGLIHQGMKCDTCMM 138
Score = 105 bits (264), Expect = 3e-26
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 136 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE--LQVVDLLYEIYEVIVFGFQYLRERF 193
H+F F PTFC HC ++G +QG +C+ V +E G
Sbjct: 38 HKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASD 97
Query: 194 KIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFC 236
H+FK + + SPTFCDHCGSLLYGL QG+KC+ C
Sbjct: 98 DPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNV 140
Score = 83.5 bits (206), Expect = 2e-18
Identities = 36/160 (22%), Positives = 51/160 (31%), Gaps = 21/160 (13%)
Query: 2 SPTFCDHCGSLLSSVTSR-------LRAAHQRSSSDSDLPLVDEENVFGRAITRRRGAIK 54
PTFC HC + + H+R E V +G
Sbjct: 47 QPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRC----------HEFVTFSCPGADKGP-- 94
Query: 55 HQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCS 114
H F + PTFC C L+G QG +C TC VHK+C + + C
Sbjct: 95 -ASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCG 153
Query: 115 GSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFCDHCGS 154
E IY++ +V + + D G
Sbjct: 154 TDHTERRGRIYIQAHIDREVLI-VVVRDAKNLVPMDPNGL 192
Score = 28.8 bits (64), Expect = 2.1
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 1 MSPTFCDHCGSLL 13
SPTFCDHCGSLL
Sbjct: 111 SSPTFCDHCGSLL 123
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 112 bits (281), Expect = 4e-32
Identities = 43/75 (57%), Positives = 53/75 (70%)
Query: 43 GRAITRRRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVH 102
+ +RRGAIK KVH VK H F A FF QPTFC+ C +F+WG KQGYQC+ C A+H
Sbjct: 3 SGSSGQRRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIH 62
Query: 103 KKCHDKLLTKCSGSG 117
KKC DK++ KC+GS
Sbjct: 63 KKCIDKVIAKCTGSA 77
Score = 57.1 bits (138), Expect = 3e-11
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 198 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
H F F PTFC C ++GL +QG +C C
Sbjct: 23 CHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQC 57
Score = 52.8 bits (127), Expect = 1e-09
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 135 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCE 167
H F F PTFC C ++GL +QG +C
Sbjct: 23 CHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCR 55
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 106 bits (265), Expect = 1e-29
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 48 RRRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107
+ K K+H +K H F+A FF QPTFC+ CKDF+WG KQGY+C+ C A+HKKC D
Sbjct: 2 SSGSSGKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCID 61
Query: 108 KLLTKCSGSGRESEST 123
K++ +C+G+ S T
Sbjct: 62 KIIGRCTGTAANSRDT 77
Score = 58.7 bits (142), Expect = 7e-12
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 185 GFQYLRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
G + + H F F PTFC C ++GL +QG KC C
Sbjct: 4 GSSGKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQC 51
Score = 54.4 bits (131), Expect = 3e-10
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 135 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCE 167
H F F PTFC C ++GL +QG KC
Sbjct: 17 NHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCR 49
Score = 25.2 bits (55), Expect = 9.6
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 2 SPTFCDHCGSLL 13
PTFC C +
Sbjct: 27 QPTFCSVCKDFV 38
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 79.6 bits (196), Expect = 9e-20
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 48 RRRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHD 107
+ + K+ K H F FF++P FC C + K G +C+ C+T +H+ C
Sbjct: 2 SSGSSGEPPKLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQS 61
Query: 108 KL-LTKCSGSG 117
+ + +CSG
Sbjct: 62 YVEMQRCSGPS 72
Score = 67.6 bits (165), Expect = 3e-15
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 191 ERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
+ D PH+FK + F P FCD C ++ + GL+C+ C
Sbjct: 10 PKLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNC 51
Score = 63.4 bits (154), Expect = 1e-13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 128 ERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
+ D PH+FK + F P FCD C ++ + GL+C+
Sbjct: 10 PKLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKN 50
Score = 27.2 bits (60), Expect = 1.3
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 1 MSPTFCDHCGSLL 13
P FCD C ++
Sbjct: 26 KKPKFCDVCARMI 38
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 85
Score = 79.2 bits (195), Expect = 2e-19
Identities = 23/72 (31%), Positives = 30/72 (41%)
Query: 56 QKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSG 115
H F + PTFC C L+G QG +C TC VHK+C + + C
Sbjct: 10 DTDDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGM 69
Query: 116 SGRESESTIYLR 127
E IYL+
Sbjct: 70 DHTEKRGRIYLK 81
Score = 68.0 bits (166), Expect = 3e-15
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 198 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
H+FK + + SPTFCDHCGSLLYGL QG+KC+ C
Sbjct: 17 KHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTC 51
Score = 64.5 bits (157), Expect = 6e-14
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 135 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
H+FK + + SPTFCDHCGSLLYGL QG+KC+
Sbjct: 17 KHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDT 50
Score = 29.1 bits (65), Expect = 0.40
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 1 MSPTFCDHCGSLL 13
SPTFCDHCGSLL
Sbjct: 26 GSPTFCDHCGSLL 38
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain,
zinc-binding domain, endocytosis/exocytosis,signaling
protein complex; NMR {Rattus norvegicus}
Length = 66
Score = 76.0 bits (187), Expect = 2e-18
Identities = 20/63 (31%), Positives = 26/63 (41%)
Query: 51 GAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLL 110
G+ H F PT+C C+ LWG +QG +C C H+KC D L
Sbjct: 1 GSPGISGGGGGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLN 60
Query: 111 TKC 113
C
Sbjct: 61 ADC 63
Score = 66.4 bits (162), Expect = 7e-15
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 192 RFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
+ H F+ + +PT+C C LL+G+ RQG++C C
Sbjct: 7 GGGGGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTEC 47
Score = 62.9 bits (153), Expect = 2e-13
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 129 RFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
+ H F+ + +PT+C C LL+G+ RQG++C E
Sbjct: 7 GGGGGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTE 46
Score = 27.5 bits (61), Expect = 1.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 1 MSPTFCDHCGSLL 13
+PT+C C LL
Sbjct: 22 TTPTYCYECEGLL 34
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 65
Score = 71.3 bits (175), Expect = 1e-16
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 62 KGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
H F ++ PTFC C LWG +QG +C C VH +C K+ C
Sbjct: 11 MPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLC 62
Score = 71.3 bits (175), Expect = 1e-16
Identities = 29/41 (70%), Positives = 35/41 (85%)
Query: 192 RFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
KID+PHRFK YN+ SPTFC+HCG+LL+GL RQGLKC+ C
Sbjct: 6 SGKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDAC 46
Score = 67.9 bits (166), Expect = 2e-15
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 129 RFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
KID+PHRFK YN+ SPTFC+HCG+LL+GL RQGLKC+
Sbjct: 6 SGKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDA 45
Score = 28.6 bits (64), Expect = 0.41
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 1 MSPTFCDHCGSLL 13
SPTFC+HCG+LL
Sbjct: 21 KSPTFCEHCGTLL 33
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus
musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Length = 50
Score = 69.0 bits (169), Expect = 6e-16
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
H F + PTFC C LWG KQG +C+ C VH KC +K+ C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
Score = 62.1 bits (151), Expect = 2e-13
Identities = 28/34 (82%), Positives = 31/34 (91%)
Query: 199 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
HRFK YN+MSPTFCDHCGSLL+GL +QGLKCE C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDC 34
Score = 58.6 bits (142), Expect = 4e-12
Identities = 27/33 (81%), Positives = 31/33 (93%)
Query: 136 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
HRFK YN+MSPTFCDHCGSLL+GL +QGLKCE+
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCED 33
Score = 27.4 bits (61), Expect = 0.66
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 1 MSPTFCDHCGSLL 13
MSPTFCDHCGSLL
Sbjct: 9 MSPTFCDHCGSLL 21
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 68.2 bits (167), Expect = 1e-15
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 61 VKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
+ H F K F + FC C+ FL G++CQTC H+ C K+ T C
Sbjct: 1 LTTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMC 49
Score = 49.0 bits (117), Expect = 2e-08
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 198 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
H F F+ FCD C L G +C+ C
Sbjct: 3 THNFARKTFLKLAFCDICQKFLL----NGFRCQTC 33
Score = 45.1 bits (107), Expect = 3e-07
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 135 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
H F F+ FCD C L G +C+
Sbjct: 3 THNFARKTFLKLAFCDICQKFLL----NGFRCQT 32
Score = 26.2 bits (58), Expect = 2.0
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 1 MSPTFCDHCGSLL 13
+ FCD C L
Sbjct: 12 LKLAFCDICQKFL 24
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 74.9 bits (184), Expect = 1e-15
Identities = 34/141 (24%), Positives = 48/141 (34%), Gaps = 8/141 (5%)
Query: 26 RSSSDSDLPLVDEENVFGRAITRRRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLW 85
DS E + R Q K H F FR P +C +C +F+W
Sbjct: 172 HDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMW 231
Query: 86 GFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGRESESTIYLRERFKIDVPHRFKPYNFMS 145
G QG +C C VHK+C + C + + + D+ K +
Sbjct: 232 GLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKV------YSCDLTTLVKAHTTKR 285
Query: 146 PTFCDHCGSL--LYGLFRQGL 164
P D C GL +GL
Sbjct: 286 PMVVDMCIREIESRGLNSEGL 306
Score = 49.5 bits (118), Expect = 4e-07
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 190 RERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFC 236
+ K + H FK + F P +C++C + ++GL QG+KC C
Sbjct: 201 EQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNV 247
Score = 44.9 bits (106), Expect = 1e-05
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Query: 127 RERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVV---DLLYEIYEVIV 183
+ K + H FK + F P +C++C + ++GL QG+KC + + +
Sbjct: 201 EQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCK 260
Query: 184 FGFQYLRERFKIDVPHRFKPYNFMSPTFCDHCGSL--LYGLFRQGL--KC-------EVC 232
+++++ + D+ K + P D C GL +GL +V
Sbjct: 261 PDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVK 320
Query: 233 FSFCNTFSPPRLSDEKALDV 252
+F +S D+
Sbjct: 321 MAFDRDGEKADISVNMYEDI 340
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 69.0 bits (168), Expect = 1e-15
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 56 QKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGK--QGYQCQTCQTAVHKKCHDKLLTKC 113
KGH F+ + PT C C LW K +C+ C HK DK
Sbjct: 17 SNYICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEII 76
Query: 114 S 114
+
Sbjct: 77 A 77
Score = 48.6 bits (115), Expect = 4e-08
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 190 RERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFR--QGLKCEVC 232
+ + H F P + PT C+ C L+ +F+ L+C C
Sbjct: 16 KSNYICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRC 60
Score = 45.5 bits (107), Expect = 6e-07
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 127 RERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFR--QGLKCEE 168
+ + H F P + PT C+ C L+ +F+ L+C
Sbjct: 16 KSNYICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRR 59
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 60.3 bits (146), Expect = 1e-12
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 62 KGHYFVAK-FFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
+GH FV P +C C + +Q +C C+ H +C + C
Sbjct: 9 EGHRFVELALRGGPGWCDLCGREVL---RQALRCANCKFTCHSECRSLIQLDC 58
Score = 42.9 bits (101), Expect = 2e-06
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 199 HRFKPYNFMS-PTFCDHCGSLLYGLFRQGLKCEVC 232
HRF P +CD CG + RQ L+C C
Sbjct: 11 HRFVELALRGGPGWCDLCGREVL---RQALRCANC 42
Score = 39.8 bits (93), Expect = 3e-05
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 136 HRFKPYNFMS-PTFCDHCGSLLYGLFRQGLKCEE 168
HRF P +CD CG + RQ L+C
Sbjct: 11 HRFVELALRGGPGWCDLCGREVL---RQALRCAN 41
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis,
cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 60.0 bits (145), Expect = 2e-12
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 62 KGHYFVAK-FFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
+GH FV P +C C + +Q +C C+ H +C + C
Sbjct: 22 EGHRFVELALRGGPGWCDLCGREVL---RQALRCANCKFTCHSECRSLIQLDC 71
Score = 43.8 bits (103), Expect = 2e-06
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 199 HRFKPYNFMS-PTFCDHCGSLLYGLFRQGLKCEVC 232
HRF P +CD CG + RQ L+C C
Sbjct: 24 HRFVELALRGGPGWCDLCGR---EVLRQALRCANC 55
Score = 40.7 bits (95), Expect = 2e-05
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 136 HRFKPYNFMS-PTFCDHCGSLLYGLFRQGLKCEE 168
HRF P +CD CG + RQ L+C
Sbjct: 24 HRFVELALRGGPGWCDLCGR---EVLRQALRCAN 54
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 53.3 bits (128), Expect = 2e-08
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 55 HQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCS 114
+ + GH F F + T C C+ L G QGY+C C+ HK+C + + C
Sbjct: 338 YPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR-VPPCG 396
Query: 115 GSGRESESTI 124
G++ T+
Sbjct: 397 RHGQDFAGTM 406
Score = 42.5 bits (100), Expect = 7e-05
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 189 LRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
+ H F+ ++F T C C LL G F QG +C C
Sbjct: 337 IYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRC 380
Score = 38.7 bits (90), Expect = 0.001
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 126 LRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCE 167
+ H F+ ++F T C C LL G F QG +C
Sbjct: 337 IYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCY 378
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 48.5 bits (115), Expect = 7e-07
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 55 HQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCS 114
+ + GH F F + T C C+ L G QGY+C C+ + HK+C + + C
Sbjct: 510 YPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR-VPPCG 568
Query: 115 GSGRESESTIY 125
G++ T+
Sbjct: 569 RHGQDFPGTMK 579
Score = 41.2 bits (96), Expect = 2e-04
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 189 LRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
+ H F+ ++F T C C LL G F QG +C C
Sbjct: 509 IYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRC 552
Score = 37.3 bits (86), Expect = 0.003
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 126 LRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
+ H F+ ++F T C C LL G F QG +C
Sbjct: 509 IYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHR 551
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding
domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
g.49.1.1
Length = 84
Score = 43.8 bits (103), Expect = 2e-06
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLW-GFGKQGYQCQTCQTAVHKKCHDKLLTKCSG 115
H ++ C C Q ++C C+ VH C + LLTKCSG
Sbjct: 28 HQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSG 80
Score = 26.5 bits (58), Expect = 2.9
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 195 IDVPHRFKPYNFMSPTFCDHCGSLLYGLFR-QGLKCEVC 232
I +PH++ N C C + R Q +C C
Sbjct: 24 IAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWC 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 7e-05
Identities = 52/278 (18%), Positives = 79/278 (28%), Gaps = 85/278 (30%)
Query: 8 HCGSL---------LSSVTSRLRAAHQRS-SSDSDLPLVDEENV-----FGRAITRRRGA 52
H GSL + S+L+ + ++ D+E G+ + G
Sbjct: 13 H-GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL----GY 67
Query: 53 IKHQKVHQVKGHYF-VAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLT 111
+ G + V F +L G +H KLL
Sbjct: 68 VSSLVEPSKVGQFDQVLNL----CLTEFENCYLEG------------NDIHALAA-KLLQ 110
Query: 112 KCSGSGRESESTI--YLRERFKIDVPHRFKPYNFMSPTFCDHC--GSL-LYGLFR-QG-- 163
+ + +++ I Y+ R P K N S F G+ L +F QG
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFD-KKSN--SALF-RAVGEGNAQLVAIFGGQGNT 166
Query: 164 LKC-EELQVVDLLYEIYEVIVFGFQYLRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGL 222
EEL+ LY+ Y V+V L L
Sbjct: 167 DDYFEELR---DLYQTYHVLVG-------------------------DLIKFSAETLSEL 198
Query: 223 FRQGLKCEVCFSF-CNTFS----PPRLSDEKALD-VPI 254
R L E F+ N P D+ L +PI
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 34.7 bits (79), Expect = 0.016
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLL 110
Y + C C L QG C+TC +H C K
Sbjct: 170 QYIRETYPDAVKICNICHSLL----IQGQSCETCGIRMHLPCVAKYF 212
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding
protein, signaling protein; NMR {Mus musculus} SCOP:
g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 31.5 bits (71), Expect = 0.023
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDK 108
H F K + C C+ + G +C+ C+ H KC +
Sbjct: 5 HRFSTKSW-LSQVCNVCQKSMI----FGVKCKHCRLKCHNKCTKE 44
Score = 24.9 bits (54), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 197 VPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
V HRF +++S C+ C + G+KC+ C
Sbjct: 3 VTHRFSTKSWLSQV-CNVCQKSMI----FGVKCKHC 33
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 30.7 bits (69), Expect = 0.29
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 14/96 (14%)
Query: 76 FCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTK-------CSGSGRESESTIYLRE 128
+CA C++ G + C+ C H CH LT C+ S+ +
Sbjct: 6 WCAVCQN-----GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDC 60
Query: 129 --RFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQ 162
+ + ++P C LL L+
Sbjct: 61 DAPSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCH 96
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 29.1 bits (64), Expect = 0.71
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 77 CAFCKDFLWGFGKQGYQCQTCQTAVHKKC 105
C C + L G C+ C+ V KC
Sbjct: 58 CILCGEQLGMLGSASVVCEDCKKNVCTKC 86
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 27.6 bits (61), Expect = 0.96
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 76 FCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLL 110
C C L QG C+TC +H C K
Sbjct: 17 ICNICHSLL----IQGQSCETCGIRMHLPCVAKYF 47
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 29.2 bits (65), Expect = 1.4
Identities = 6/35 (17%), Positives = 9/35 (25%), Gaps = 1/35 (2%)
Query: 71 FRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKC 105
C C + + C C V + C
Sbjct: 372 VTHVMMCMNCGCDF-SLTLRRHHCHACGKIVCRNC 405
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.7
Identities = 16/79 (20%), Positives = 23/79 (29%), Gaps = 17/79 (21%)
Query: 107 DKLLTKCSGSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKC 166
+ T+ + I R+R D F YN Y RQ L
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQ--------PYLKLRQALL- 145
Query: 167 EELQVVDLLYEIYEVIVFG 185
EL+ V++ G
Sbjct: 146 -ELRPAKN------VLIDG 157
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 28.7 bits (63), Expect = 1.7
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 11/114 (9%)
Query: 76 FCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGRESESTIYLRERFKIDVP 135
+CA C++ G C+ C H CH L + +
Sbjct: 9 WCAVCQN-----GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDC 63
Query: 136 HRF------KPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVVDLLYEIYEVIV 183
K +SP C LL L+ L E + V Y I+
Sbjct: 64 DNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKII 117
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 27.0 bits (60), Expect = 5.4
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 90 QGYQCQTCQTAVHKKCHDKLLTKCSG 115
G + + + ++ H+ T+ G
Sbjct: 37 YGIKVKGVRGQCDRRRHETAATEIGG 62
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol
protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A
2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Length = 238
Score = 26.7 bits (58), Expect = 7.1
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 180 EVIVFGFQYLRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFCNTF 239
E+I F L ER K + + F + Y ++ K FS
Sbjct: 63 EIINFYMNMLMERSK---EKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILL 119
Query: 240 SP 241
P
Sbjct: 120 VP 121
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme,
3_10 helix, lyase; 2.35A {Paracoccus denitrificans}
SCOP: b.88.1.4 PDB: 1xa8_A*
Length = 196
Score = 26.6 bits (58), Expect = 7.4
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 96 TCQTAVHKKCHDKLLTKCSGSGRESESTIYLRERFKI----DVPHRFKPYNFMSPTFCDH 151
QTA + C K G+ S+ + R+ ++ + + C
Sbjct: 45 RAQTAHNHVCGCTKCWKPEGAIF-SQVAVVGRDALEVLEGAEKLEIVNAEAPIQRHRCRD 103
Query: 152 CGSLLYG 158
CG +YG
Sbjct: 104 CGVHMYG 110
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 26.1 bits (56), Expect = 8.5
Identities = 13/58 (22%), Positives = 15/58 (25%)
Query: 48 RRRGAIKHQKVHQVKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKC 105
R +G + K T CA C QC C V K C
Sbjct: 42 RLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSC 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.468
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,011,808
Number of extensions: 233843
Number of successful extensions: 892
Number of sequences better than 10.0: 1
Number of HSP's gapped: 865
Number of HSP's successfully gapped: 100
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.0 bits)