RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8311
(254 letters)
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 68.5 bits (167), Expect = 4e-16
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 62 KGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKCSGSGR 118
K H F FR P +C +C +F+WG QG +C C VHK+C + C +
Sbjct: 3 KTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLK 59
Score = 53.5 bits (128), Expect = 2e-10
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 198 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFC 236
H FK + F P +C++C + ++GL QG++C C
Sbjct: 4 THNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNV 42
Score = 49.6 bits (118), Expect = 4e-09
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 135 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVV 172
H FK + F P +C++C + ++GL QG++C + +
Sbjct: 4 THNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLN 41
Score = 24.2 bits (52), Expect = 5.3
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 1 MSPTFCDHCGSLL 13
P +C++C + +
Sbjct: 13 RGPHWCEYCANFM 25
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 64.3 bits (156), Expect = 2e-14
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 62 KGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
H F + PTFC C L+G QG +C C+ VH++C + + C
Sbjct: 7 NKHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLC 58
Score = 49.3 bits (117), Expect = 5e-09
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 198 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
H+F+ +++ SPTFCDHCGSLLYGL QG+KC C
Sbjct: 8 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCC 42
Score = 45.8 bits (108), Expect = 1e-07
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 135 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVV 172
H+F+ +++ SPTFCDHCGSLLYGL QG+KC ++
Sbjct: 8 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMN 45
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 63.2 bits (153), Expect = 3e-14
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
H F + PTFC C LWG KQG +C+ C VH KC +K+ C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
Score = 51.6 bits (123), Expect = 6e-10
Identities = 28/38 (73%), Positives = 31/38 (81%)
Query: 199 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVCFSFC 236
HRFK YN+MSPTFCDHCGSLL+GL +QGLKCE C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNV 38
Score = 47.7 bits (113), Expect = 1e-08
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 136 HRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEELQVV 172
HRFK YN+MSPTFCDHCGSLL+GL +QGLKCE+ +
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMN 37
Score = 23.1 bits (49), Expect = 8.3
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 1 MSPTFCDHCGSLLSSV 16
MSPTFCDHCGSLL +
Sbjct: 9 MSPTFCDHCGSLLWGL 24
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 63.9 bits (155), Expect = 4e-14
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWG-FGKQGYQCQTCQTAVHKKCHDKLLTKCSG 115
H ++ C C Q ++C C+ VH C + LLTKCSG
Sbjct: 28 HQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSG 80
Score = 58.1 bits (140), Expect = 5e-12
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 189 LRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFR-QGLKCEVCFSFCNTFSPPRLSDE 247
+ + I +PH++ N C C + R Q +C C + +T L +
Sbjct: 18 IEDADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTK 77
Score = 55.1 bits (132), Expect = 7e-11
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 112 KCSGSGRESESTIYLRERFKIDVPHRFKPYNFMSPTFCDHCGSLLYGLFR-QGLKCEE 168
SG+ S + + I +PH++ N C C + R Q +C
Sbjct: 4 GSSGTTLASIGKDIIEDADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLW 61
Score = 25.4 bits (55), Expect = 2.6
Identities = 4/19 (21%), Positives = 4/19 (21%)
Query: 1 MSPTFCDHCGSLLSSVTSR 19
C C SV
Sbjct: 36 PVSAKCTVCDKTCGSVLRL 54
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 56.1 bits (135), Expect = 1e-11
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 61 VKGHYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTKC 113
+ H F K F + FC C+ FL G++CQTC H+ C K+ T C
Sbjct: 1 LTTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMC 49
Score = 40.3 bits (94), Expect = 7e-06
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 198 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
H F F+ FCD C L G +C+ C
Sbjct: 3 THNFARKTFLKLAFCDICQKFLL----NGFRCQTC 33
Score = 36.9 bits (85), Expect = 1e-04
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 135 PHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
H F F+ FCD C L G +C+
Sbjct: 3 THNFARKTFLKLAFCDICQKFLL----NGFRCQT 32
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 48.3 bits (115), Expect = 1e-08
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 64 HYFVAKFFRQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKL 109
H F K + C C+ + G +C+ C+ H KC +
Sbjct: 5 HRFSTKSWLSQV-CNVCQKSMI----FGVKCKHCRLKCHNKCTKEA 45
Score = 42.1 bits (99), Expect = 1e-06
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 197 VPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEVC 232
V HRF +++S C+ C + G+KC+ C
Sbjct: 3 VTHRFSTKSWLSQV-CNVCQKSMI----FGVKCKHC 33
Score = 39.0 bits (91), Expect = 2e-05
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 134 VPHRFKPYNFMSPTFCDHCGSLLYGLFRQGLKCEE 168
V HRF +++S C+ C + G+KC+
Sbjct: 3 VTHRFSTKSWLSQV-CNVCQKSMI----FGVKCKH 32
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
aggregans [TaxId: 54254]}
Length = 481
Score = 25.9 bits (56), Expect = 5.2
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 79 FCKDFLWGFGKQGYQC 94
F KDF+ G+ +Q
Sbjct: 3 FPKDFMIGYSSSPFQF 18
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 25.9 bits (56), Expect = 5.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 79 FCKDFLWGFGKQGYQC 94
F FL+G YQ
Sbjct: 13 FPPSFLFGAATSAYQI 28
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase)
{Creeping white clover (Trifolium repens) [TaxId:
3899]}
Length = 490
Score = 25.9 bits (56), Expect = 5.5
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 79 FCKDFLWGFGKQGYQC 94
F F++G +Q
Sbjct: 19 FAPGFVFGTASSAFQY 34
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.1 bits (54), Expect = 5.6
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 72 RQPTFCAFCKDFLWGFGKQGYQCQTCQTAVHKKC 105
C C + L G C+ C+ V KC
Sbjct: 46 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 79
>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White
mustard (Sinapis alba) [TaxId: 3728]}
Length = 499
Score = 25.9 bits (56), Expect = 5.8
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 79 FCKDFLWGFGKQGYQC 94
F DF++G YQ
Sbjct: 23 FSSDFIFGVASSAYQI 38
>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans,
subsp. alkalophilus [TaxId: 1397]}
Length = 449
Score = 25.9 bits (56), Expect = 6.0
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 79 FCKDFLWGFGKQGYQC 94
F DF WG YQ
Sbjct: 5 FPSDFKWGVATAAYQI 20
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 56
Score = 23.7 bits (51), Expect = 6.1
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 77 CAFCKDFLWGFGKQGYQCQTCQ 98
C CK+ +G C+
Sbjct: 34 CDRCKEGFFGNPLAPNPADKCK 55
>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId:
1931]}
Length = 464
Score = 25.9 bits (56), Expect = 6.2
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 79 FCKDFLWGFGKQGYQC 94
F + FLWG YQ
Sbjct: 4 FPEGFLWGSATASYQI 19
>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid
(Brevicoryne brassicae) [TaxId: 69196]}
Length = 462
Score = 25.6 bits (55), Expect = 6.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 79 FCKDFLWGFGKQGYQC 94
F KDF++G YQ
Sbjct: 3 FPKDFMFGTSTASYQI 18
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.4 bits (52), Expect = 6.5
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 75 TFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTK 112
C C+ G Q +CQ C H+ CH +T
Sbjct: 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTD 54
>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa
[TaxId: 1406]}
Length = 447
Score = 25.5 bits (55), Expect = 6.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 79 FCKDFLWGFGKQGYQC 94
F +DF+WG YQ
Sbjct: 5 FPQDFMWGTATAAYQI 20
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 23.8 bits (51), Expect = 7.1
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 75 TFCAFCKDFLWGFGKQGYQCQTCQTAVHKKCHDKLLTK 112
T C C+ C C+ H CH L
Sbjct: 8 TICRVCQK-----PGDLVMCNQCEFCFHLDCHLPALQD 40
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 489
Score = 25.6 bits (55), Expect = 7.2
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 79 FCKDFLWGFGKQGYQC 94
F F +G+ + G+Q
Sbjct: 4 FPNSFRFGWSQAGFQS 19
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 25.6 bits (55), Expect = 7.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 79 FCKDFLWGFGKQGYQC 94
KDF++G YQ
Sbjct: 5 LPKDFIFGGATAAYQA 20
>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima
[TaxId: 2336]}
Length = 443
Score = 25.5 bits (55), Expect = 7.9
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 79 FCKDFLWGFGKQGYQC 94
F + FLWG YQ
Sbjct: 4 FPEGFLWGVATASYQI 19
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 24.7 bits (54), Expect = 8.4
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 26/74 (35%)
Query: 148 FCDHCGSLLYGLFRQGLKCEELQVVDLLYEIYEVIVFGFQYLRERFKIDVPHRFKPYNFM 207
+C HC +++ ELQ++DL ++ E I F+ DV R
Sbjct: 125 YCSHCRQVVHE--------SELQMLDLGTQVKEAI--------LDFENDVEKR------- 161
Query: 208 SPTFCDHCGSLLYG 221
C HC +L Y
Sbjct: 162 ---TCFHCKTLNYA 172
>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 423
Score = 25.2 bits (54), Expect = 9.0
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 79 FCKDFLWGFGKQGYQC 94
F + FL+G +Q
Sbjct: 5 FPEMFLFGTATSSHQI 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.142 0.468
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,028,527
Number of extensions: 50003
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 57
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.4 bits)