Query psy8312
Match_columns 145
No_of_seqs 134 out of 618
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 00:32:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00835 RanBD Ran-binding doma 100.0 1.2E-34 2.6E-39 212.9 13.1 96 50-145 1-104 (122)
2 smart00160 RanBD Ran-binding d 100.0 1.5E-33 3.3E-38 210.0 13.2 103 43-145 3-114 (130)
3 PF00638 Ran_BP1: RanBP1 domai 100.0 3.5E-32 7.5E-37 198.7 13.0 95 51-145 1-103 (122)
4 COG5171 YRB1 Ran GTPase-activa 100.0 6.5E-30 1.4E-34 198.4 4.3 104 42-145 72-184 (211)
5 KOG0866|consensus 99.8 2.9E-20 6.3E-25 155.5 3.6 121 24-145 122-250 (327)
6 KOG0864|consensus 99.7 6E-18 1.3E-22 135.7 -1.9 102 43-144 40-152 (215)
7 KOG2724|consensus 99.5 7.3E-15 1.6E-19 126.9 5.3 87 58-145 379-469 (487)
8 cd00837 EVH1 EVH1 (Enabled, Va 98.9 1.5E-08 3.3E-13 72.6 10.4 75 59-133 1-79 (104)
9 PF00568 WH1: WH1 domain; Int 98.2 2.2E-05 4.9E-10 56.6 10.7 74 60-133 9-86 (111)
10 cd01206 Homer Homer type EVH1 98.2 7.3E-06 1.6E-10 59.8 6.8 71 59-131 3-78 (111)
11 cd01207 Ena-Vasp Enabled-VASP- 98.1 2.5E-05 5.4E-10 57.2 8.7 74 59-132 1-81 (111)
12 smart00461 WH1 WASP homology r 96.9 0.012 2.7E-07 42.2 9.2 72 59-131 3-79 (106)
13 PF08553 VID27: VID27 cytoplas 94.7 0.38 8.3E-06 45.7 10.7 87 57-145 245-335 (794)
14 PF06058 DCP1: Dcp1-like decap 84.1 11 0.00025 27.6 8.3 68 61-131 22-94 (122)
15 KOG0866|consensus 71.9 1.3 2.9E-05 38.0 0.2 71 59-133 242-314 (327)
16 KOG4590|consensus 63.3 7.5 0.00016 34.5 3.1 56 72-127 3-66 (409)
17 PF09200 Monellin: Monellin; 56.5 3.4 7.4E-05 25.1 -0.1 26 66-91 15-40 (43)
18 PF14242 DUF4342: Domain of un 40.8 32 0.00069 23.8 2.7 25 91-117 27-51 (84)
19 PF07933 DUF1681: Protein of u 39.4 1.8E+02 0.0039 22.6 7.0 77 59-135 3-94 (160)
20 COG5167 VID27 Protein involved 38.6 1.6E+02 0.0034 27.7 7.4 84 61-145 230-315 (776)
21 cd01205 WASP WASP-type EVH1 do 36.3 1.6E+02 0.0035 21.2 9.9 62 61-124 6-71 (105)
22 KOG3671|consensus 33.1 37 0.0008 31.2 2.6 54 67-122 45-103 (569)
23 PF10577 UPF0560: Uncharacteri 29.6 40 0.00086 32.5 2.3 28 63-90 205-233 (807)
24 COG3549 HigB Plasmid maintenan 28.3 1.2E+02 0.0025 21.7 3.9 61 47-115 31-91 (94)
25 PF08758 Cadherin_pro: Cadheri 23.2 2.6E+02 0.0057 19.3 5.8 75 67-143 8-86 (90)
26 PHA02991 HT motif gene family 21.2 42 0.00091 24.9 0.6 17 77-93 13-29 (120)
No 1
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=1.2e-34 Score=212.89 Aligned_cols=96 Identities=28% Similarity=0.493 Sum_probs=89.7
Q ss_pred eecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCC--C
Q psy8312 50 VAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPS--D 125 (145)
Q Consensus 50 vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~--~ 125 (145)
|++.||||+|++||+.|||||+|++++ +|+|||+|+||||+++++ ++|||||+|+++||+||++|+++|++++++ +
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~ 80 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSD 80 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCC
Confidence 689999999999999999999999866 899999999999999975 999999999999999999999999999986 7
Q ss_pred CeEEEEEE--c--CCcceEEEEeC
Q psy8312 126 NSVRLTAI--E--NGQAKVYLVKV 145 (145)
Q Consensus 126 k~v~~~a~--~--~~~~~~~likv 145 (145)
++|+|++. + ++++++|+|||
T Consensus 81 k~~~~~~~d~~~~~~~~~~~~lrf 104 (122)
T cd00835 81 KSIVWAAMDFSDDEPKPETFAIRF 104 (122)
T ss_pred cEEEEEeeecCCCCCcEEEEEEEE
Confidence 99999988 2 27999999997
No 2
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=1.5e-33 Score=210.02 Aligned_cols=103 Identities=28% Similarity=0.429 Sum_probs=93.3
Q ss_pred ccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC--eeEEEEEecCceeEEEeeeeccceE
Q psy8312 43 CKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS--LSRIVIRVVGSLRVILNTKIWAEMV 119 (145)
Q Consensus 43 ~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~--~~RivmR~d~~~rvllN~~i~~~m~ 119 (145)
+.+.|++|++.||||+|+++|+.|||||+|++.+ +|+|||+|.||||+++++ ++|||||+++++||+|||+|+++|+
T Consensus 3 ~~~~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~ 82 (130)
T smart00160 3 PVVPLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMT 82 (130)
T ss_pred CcccCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcE
Confidence 4567888999999999999999999999999766 899999999999999875 9999999999999999999999999
Q ss_pred EecCC--CCeEEEEEE----cCCcceEEEEeC
Q psy8312 120 VQKPS--DNSVRLTAI----ENGQAKVYLVKV 145 (145)
Q Consensus 120 ~~~~~--~k~v~~~a~----~~~~~~~~likv 145 (145)
+.++. .+++.|++. +++++++|+|||
T Consensus 83 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irf 114 (130)
T smart00160 83 LKPLAGSNRALKWTPEDFADDIPKLVLYAVRF 114 (130)
T ss_pred EeecCCCcceEEEeeeecCCCCCceEEEEEEe
Confidence 99863 478899775 346899999997
No 3
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=100.00 E-value=3.5e-32 Score=198.71 Aligned_cols=95 Identities=34% Similarity=0.586 Sum_probs=83.2
Q ss_pred ecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecC--CCC
Q psy8312 51 AVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKP--SDN 126 (145)
Q Consensus 51 ev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~--~~k 126 (145)
+|+||||+|+++|+.|||||+|++++ +|++||+|.|||++++++ ++|||||+++++||+||++|+++|++++. +.+
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~ 80 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEK 80 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCc
Confidence 58999999999999999999999866 899999999999999865 99999999999999999999999999875 367
Q ss_pred eEEEEEE----cCCcceEEEEeC
Q psy8312 127 SVRLTAI----ENGQAKVYLVKV 145 (145)
Q Consensus 127 ~v~~~a~----~~~~~~~~likv 145 (145)
++.|++. +++++.+|+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~irf 103 (122)
T PF00638_consen 81 SLVWTAIDYADEEGKPETYLIRF 103 (122)
T ss_dssp EEEEEEEECTTSSSEEEEEEEE-
T ss_pred EEEEEeccccCCCCceEEEEEEE
Confidence 8999776 457899999997
No 4
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=99.96 E-value=6.5e-30 Score=198.41 Aligned_cols=104 Identities=24% Similarity=0.360 Sum_probs=96.5
Q ss_pred cccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceE
Q psy8312 42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMV 119 (145)
Q Consensus 42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~ 119 (145)
.+++.|+.|.+.|-||+|.++|.+|||||+|+.+. .|+|||.|.++|++|+.+ +.||+||+|+++|||+||.|.|.|+
T Consensus 72 epvV~l~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklcaNH~i~Pe~k 151 (211)
T COG5171 72 EPVVELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINPEFK 151 (211)
T ss_pred HHHHHHHhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhhhhccCccee
Confidence 45788999999999999999999999999999987 899999999999999876 9999999999999999999999999
Q ss_pred EecC--CCCeEEEEEEc-----CCcceEEEEeC
Q psy8312 120 VQKP--SDNSVRLTAIE-----NGQAKVYLVKV 145 (145)
Q Consensus 120 ~~~~--~~k~v~~~a~~-----~~~~~~~likv 145 (145)
++++ ++++|+|++.. +.++++|+|||
T Consensus 152 l~PnvgsdrsWvw~~taD~~Egea~a~tFairF 184 (211)
T COG5171 152 LQPNVGSDRSWVWMSTADTVEGEAKAQTFAIRF 184 (211)
T ss_pred ccCCCCcccceEEEeecccccCcceeeEEEEee
Confidence 9997 58999999882 35789999997
No 5
>KOG0866|consensus
Probab=99.79 E-value=2.9e-20 Score=155.52 Aligned_cols=121 Identities=48% Similarity=0.775 Sum_probs=109.0
Q ss_pred CCCCChhHHHHhhhHhhhcccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-----eeE
Q psy8312 24 TRHKSLSEAAREYEEAARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-----LSR 97 (145)
Q Consensus 24 ~~~~~l~e~a~~~~~~~~~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-----~~R 97 (145)
.+...|.+++++|+++ ....+.+..||+.+|||+|.++|++.||||.|++.. +|.|||+|.||++...++ ..|
T Consensus 122 ~~~~~l~~~a~~y~~~-~~q~~~~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r 200 (327)
T KOG0866|consen 122 PRKESLAESAAAYTKA-TAQKCGLSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSR 200 (327)
T ss_pred chhhhhhhhHHHHhHh-hhhhccceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccce
Confidence 5556777889999776 456778999999999999999999999999999987 899999999999998753 699
Q ss_pred EEEEecCceeEEEeeeeccceEEecCCCCeEEEEEE--cCCcceEEEEeC
Q psy8312 98 IVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV 145 (145)
Q Consensus 98 ivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a~--~~~~~~~~likv 145 (145)
++||..+++||++|..||..|..++++.++++++++ ++..++.|||++
T Consensus 201 ~vfrt~~slrv~~n~kv~~~m~~ek~sq~~ir~~a~~~e~~~v~vFl~~~ 250 (327)
T KOG0866|consen 201 LVFRTSSSLRVILNTKVWAAMQIEKASQKSIRITAMDTEGQGVKVFLISA 250 (327)
T ss_pred eEEeccCcceeecchHHHHHHHHhhhcccceeeccccccCCcceEEEeec
Confidence 999999999999999999999999999999999999 556899999875
No 6
>KOG0864|consensus
Probab=99.65 E-value=6e-18 Score=135.68 Aligned_cols=102 Identities=25% Similarity=0.435 Sum_probs=85.4
Q ss_pred ccccCceeecccccccceeEEEEee-eEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCc-eeEEEeeeeccce
Q psy8312 43 CKRKYEAVAVVTGEEEEVNILQINC-KLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGS-LRVILNTKIWAEM 118 (145)
Q Consensus 43 ~~~~l~~vev~tGEE~E~~vf~~ra-KLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~-~rvllN~~i~~~m 118 (145)
+.+.+..+.+.||+++|..+|..++ +||+|+.+. +|++||.|.++|++|+++ ..|++||+|++ ++||.||+|++.|
T Consensus 40 ~~~~~~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~sn~~~~~~~ 119 (215)
T KOG0864|consen 40 PQEELEKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVCSNHFIGPSF 119 (215)
T ss_pred ccccccchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhcccccccCcc
Confidence 3455677999999999999999996 999999887 999999999999999987 67999999999 8999999999999
Q ss_pred EEecCC--CCeEEEEEE-----cCCcceEEEEe
Q psy8312 119 VVQKPS--DNSVRLTAI-----ENGQAKVYLVK 144 (145)
Q Consensus 119 ~~~~~~--~k~v~~~a~-----~~~~~~~~lik 144 (145)
+++++. ++++.|... .+.+...|.|+
T Consensus 120 ~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~ 152 (215)
T KOG0864|consen 120 KLEPPAWEEDSGKWNSLADFSETQPKAEKLAIR 152 (215)
T ss_pred cccCCcccCcchhhhhhhhhcccccchhHHHHH
Confidence 999973 566666333 23444455444
No 7
>KOG2724|consensus
Probab=99.53 E-value=7.3e-15 Score=126.92 Aligned_cols=87 Identities=21% Similarity=0.367 Sum_probs=78.6
Q ss_pred cceeEEEEeeeEEEEccCCCceeeeeEEEEeeecCCCeeEEEEEecC-ceeEEEeeeeccceEEecCCCCeEEEEEE---
Q psy8312 58 EEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVG-SLRVILNTKIWAEMVVQKPSDNSVRLTAI--- 133 (145)
Q Consensus 58 ~E~~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~~~RivmR~d~-~~rvllN~~i~~~m~~~~~~~k~v~~~a~--- 133 (145)
+++.+|+.|||+|++. ++.+.+||||+|||......+..||+|.|. +++|+||..|+++|++++++.+.|+|.|+
T Consensus 379 edda~ysKkckvfykK-dKEf~dkGvgtl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcvp~~ 457 (487)
T KOG2724|consen 379 EDDAVYSKKCKVFYKK-DKEFTDKGVGTLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCVPPS 457 (487)
T ss_pred CccchhccccceEEEe-cccccccccceeecccccccceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEeCCc
Confidence 4578999999999884 458999999999999988789999999985 55799999999999999999999999998
Q ss_pred cCCcceEEEEeC
Q psy8312 134 ENGQAKVYLVKV 145 (145)
Q Consensus 134 ~~~~~~~~likv 145 (145)
++..+++|||||
T Consensus 458 e~t~p~TmLIRv 469 (487)
T KOG2724|consen 458 ESTEPATMLIRV 469 (487)
T ss_pred ccccceeEEEEe
Confidence 578999999997
No 8
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.93 E-value=1.5e-08 Score=72.65 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=66.3
Q ss_pred ceeEEEEeeeEEEEccCC-Cceee--eeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEEEE
Q psy8312 59 EVNILQINCKLFLYDSVK-TWIEL--GRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI 133 (145)
Q Consensus 59 E~~vf~~raKLy~f~~~~-~Wker--G~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a~ 133 (145)
+.+++..+|.||.+++++ .|..+ |.|.|.+.++... .+||+|+.-+..++++|+.|+++|.+....+++..|...
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~ 79 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDD 79 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcC
Confidence 357899999999998876 99999 9999999998754 799999999999999999999999999887777777643
No 9
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=98.24 E-value=2.2e-05 Score=56.62 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=63.6
Q ss_pred eeEEEEeeeEEEEccCC--Ccee-eeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEEEE
Q psy8312 60 VNILQINCKLFLYDSVK--TWIE-LGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI 133 (145)
Q Consensus 60 ~~vf~~raKLy~f~~~~--~Wke-rG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a~ 133 (145)
.++..++|.||..++.+ +|.- .|.|.+.+.++... .+||.++.-+..++++|+.|+++|.+.+..+....|...
T Consensus 9 ~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~ 86 (111)
T PF00568_consen 9 QSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDD 86 (111)
T ss_dssp EEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEET
T ss_pred eEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeC
Confidence 68999999999998766 4999 99999999887654 799999997799999999999999999987777777643
No 10
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.17 E-value=7.3e-06 Score=59.82 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=57.5
Q ss_pred ceeEEEEeeeEEEEccCC--CceeeeeEEEEee--ecCC-CeeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312 59 EVNILQINCKLFLYDSVK--TWIELGRGQLRLN--DINN-SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT 131 (145)
Q Consensus 59 E~~vf~~raKLy~f~~~~--~WkerG~G~lkl~--~~~~-~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~ 131 (145)
|..||+.||.+|.||+.+ .|.--|-+.++|. .+.. .-+|||-+.+ .++|+|+.|.++|++.++..++=.|.
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~kas~~FhQWr 78 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTKTSQKFGQWA 78 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceeeccccccccc
Confidence 678999999999999963 8998887765553 3433 3899999876 49999999999999999877765553
No 11
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.12 E-value=2.5e-05 Score=57.21 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=62.1
Q ss_pred ceeEEEEeeeEEEEccCC-CceeeeeE-----EEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312 59 EVNILQINCKLFLYDSVK-TWIELGRG-----QLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT 131 (145)
Q Consensus 59 E~~vf~~raKLy~f~~~~-~WkerG~G-----~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~ 131 (145)
|..||+.||.+|.+|..+ .|.--|-| .+.|..+... .+||+-|+..-.++++|+.|+++|.+.+....+-.|.
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~ 80 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQWR 80 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceeee
Confidence 567999999999999887 89987774 6777776543 8999999977789999999999999999877776665
Q ss_pred E
Q psy8312 132 A 132 (145)
Q Consensus 132 a 132 (145)
.
T Consensus 81 ~ 81 (111)
T cd01207 81 D 81 (111)
T ss_pred c
Confidence 3
No 12
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=96.93 E-value=0.012 Score=42.16 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=57.5
Q ss_pred ceeEEEEeeeEEEEccCC-CceeeeeE-EEEeeecCCC---eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312 59 EVNILQINCKLFLYDSVK-TWIELGRG-QLRLNDINNS---LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT 131 (145)
Q Consensus 59 E~~vf~~raKLy~f~~~~-~WkerG~G-~lkl~~~~~~---~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~ 131 (145)
|.+++..+|-+..++... .|.-.|.| .+.+...... -.||+-+..+. ++++|+.|+++|.+.+.....-.|.
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~~~~Fh~f~ 79 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQATPTFHQWA 79 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeecCCceEEEE
Confidence 557888888888888765 89999999 7777664332 68999888655 8999999999999998776666654
No 13
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.67 E-value=0.38 Score=45.66 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=63.8
Q ss_pred ccceeEEEEeeeEEEEccCC-CceeeeeEE-EEeeecCCCeeEEEEEecCceeEEEeeeeccceEEecCC-CCeEEEEEE
Q psy8312 57 EEEVNILQINCKLFLYDSVK-TWIELGRGQ-LRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPS-DNSVRLTAI 133 (145)
Q Consensus 57 E~E~~vf~~raKLy~f~~~~-~WkerG~G~-lkl~~~~~~~~RivmR~d~~~rvllN~~i~~~m~~~~~~-~k~v~~~a~ 133 (145)
+....++...|+||.|+..+ .|.-.+-.. ++|.+.. +.-..+...+..+.+|++.|.+.|++.-.. -.++.|...
T Consensus 245 ~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~~--~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~e~lSFiFN~~ 322 (794)
T PF08553_consen 245 EAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIETG--KWEYWLQIEGKDKIWLGQPVSSDMNPVFNFEHLSFIFNYY 322 (794)
T ss_pred CccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEcC--CeEEEEEEecCCceEEeeeccCCcCeEEEcceeEEEEEeE
Confidence 44448999999999999877 788775332 5555443 334445555566788999999999987653 467888887
Q ss_pred -cCCcceEEEEeC
Q psy8312 134 -ENGQAKVYLVKV 145 (145)
Q Consensus 134 -~~~~~~~~likv 145 (145)
.+|..-+|||||
T Consensus 323 ~~~~~~~sw~lkF 335 (794)
T PF08553_consen 323 TEDGSAYSWLLKF 335 (794)
T ss_pred cCCCceEEEEEEe
Confidence 567999999997
No 14
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=84.07 E-value=11 Score=27.62 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=42.2
Q ss_pred eEEE-EeeeEEEEccCC-Cceeeee-EEEEeeecC-CCeeE-EEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312 61 NILQ-INCKLFLYDSVK-TWIELGR-GQLRLNDIN-NSLSR-IVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT 131 (145)
Q Consensus 61 ~vf~-~raKLy~f~~~~-~WkerG~-G~lkl~~~~-~~~~R-ivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~ 131 (145)
.+.. ..|-||.|+..+ +|...|+ |.|.|-+.. ...++ +||-+.++..+++. |.+.+.++.. +..+.+.
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~-~~~l~~r 94 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEP--ITPDLDFELQ-DPYLIYR 94 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEE--E-SGGGEEEE-TTEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeee--cCCCcEEEEe-CCEEEEE
Confidence 3343 479999999877 8999997 788876533 33455 44444545555555 7788887754 5555554
No 15
>KOG0866|consensus
Probab=71.92 E-value=1.3 Score=37.96 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=59.0
Q ss_pred ceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEEEE
Q psy8312 59 EVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI 133 (145)
Q Consensus 59 E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a~ 133 (145)
+.-+|-.+++.|+++.-. ++..||++.++++..++. +.|++.+-.+.+.++.| -..-+..++..++.+.+-
T Consensus 242 ~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~~~r~~~kak~~~~~e~s~~~l~~----~d~d~d~~~~~~v~v~a~ 314 (327)
T KOG0866|consen 242 GVKVFLISASSKRTDQIYKSLSHRSIAALKSRVERECLKAKMPAPEEGSAPLLKE----DDSDDDLVGAPSVAVAAG 314 (327)
T ss_pred cceEEEeeccccchhhhhhhhhhhhhhhhhcccchhhhhcccCCCcccccccccc----ccchhhhcCCcceeeecc
Confidence 779999999999998765 899999999999998876 99999999999999999 334444455667776654
No 16
>KOG4590|consensus
Probab=63.31 E-value=7.5 Score=34.46 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=40.4
Q ss_pred EccCC-CceeeeeE-----EEEeeecCC-CeeEEEEEecCc-eeEEEeeeeccceEEecCCCCe
Q psy8312 72 YDSVK-TWIELGRG-----QLRLNDINN-SLSRIVIRVVGS-LRVILNTKIWAEMVVQKPSDNS 127 (145)
Q Consensus 72 f~~~~-~WkerG~G-----~lkl~~~~~-~~~RivmR~d~~-~rvllN~~i~~~m~~~~~~~k~ 127 (145)
+|..+ .|.--|.| .++|-.|-. .-.||+-|.-+- .-|+||..|.++++|.++...+
T Consensus 3 ydd~~k~W~p~g~g~~~~s~V~~~~h~~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnkatptF 66 (409)
T KOG4590|consen 3 YDDSQKGWLPAGGGGAALSKVRIYHHTSGNTFRVVGRKSQDDQQVVLNCLILKGLKYNKATPTF 66 (409)
T ss_pred ccccccccccccccCcccceeEEEeeccCCceeEEeeecccCcccccccccccCcceeecccch
Confidence 44444 78877744 344444543 379999999776 7899999999999999875443
No 17
>PF09200 Monellin: Monellin; InterPro: IPR015283 Monellin, a protein produced by the West African plant Dioscoreophyllum cumminsii (Serendipity berry), is approximately 70,000 times sweeter than sucrose on a molar basis. The protein adopts an alpha-beta structure, with a cystatin-like fold, where each helix packs against a coiled antiparallel beta-sheet []. ; PDB: 3PXM_A 1IV7_A 3PYJ_A 1KRL_D 4MON_B 2O9U_X 3Q2P_C 3MON_F 1MOL_B 1IV9_A ....
Probab=56.49 E-value=3.4 Score=25.10 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=21.4
Q ss_pred eeeEEEEccCCCceeeeeEEEEeeec
Q psy8312 66 NCKLFLYDSVKTWIELGRGQLRLNDI 91 (145)
Q Consensus 66 raKLy~f~~~~~WkerG~G~lkl~~~ 91 (145)
.-|||+|+-+..+|-||.|.|+.|..
T Consensus 15 s~~L~r~~i~Ed~K~~~~~~L~FN~~ 40 (43)
T PF09200_consen 15 SDKLFRADISEDYKTRGRKLLRFNGP 40 (43)
T ss_dssp CCCCCCCCCCCCCCCTCCCCECEEEC
T ss_pred hhhhhheeccccccccceeEEEccCc
Confidence 45788887765899999999999863
No 18
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=40.79 E-value=32 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.8
Q ss_pred cCCCeeEEEEEecCceeEEEeeeeccc
Q psy8312 91 INNSLSRIVIRVVGSLRVILNTKIWAE 117 (145)
Q Consensus 91 ~~~~~~RivmR~d~~~rvllN~~i~~~ 117 (145)
++.+..||++|.+. +.+||.+++.+
T Consensus 27 ~kGNv~Ri~Ikk~~--~tll~iPlt~g 51 (84)
T PF14242_consen 27 KKGNVTRIIIKKDD--KTLLDIPLTAG 51 (84)
T ss_pred HhcCeEEEEEEcCC--eEEEEeeeehH
Confidence 34457999999997 99999998875
No 19
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=39.42 E-value=1.8e+02 Score=22.56 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=37.4
Q ss_pred ceeEEEEe-eeEEEEccCC--------Cce---eeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecC--
Q psy8312 59 EVNILQIN-CKLFLYDSVK--------TWI---ELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKP-- 123 (145)
Q Consensus 59 E~~vf~~r-aKLy~f~~~~--------~Wk---erG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~-- 123 (145)
|.+||..+ |-+|+.-+-+ .|. --=.|-|||....+. +..|++-...++.|-+.+++...-.+++.
T Consensus 3 e~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~D 82 (160)
T PF07933_consen 3 ERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDYAAVEPVID 82 (160)
T ss_dssp S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS--EEE-TT
T ss_pred eEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCCCceEEeec
Confidence 45666653 7777764321 464 334688999876653 45777777789999999999988777776
Q ss_pred CCCeEEEEEEcC
Q psy8312 124 SDNSVRLTAIEN 135 (145)
Q Consensus 124 ~~k~v~~~a~~~ 135 (145)
+.+++.+...++
T Consensus 83 SSRYFvlRv~d~ 94 (160)
T PF07933_consen 83 SSRYFVLRVQDP 94 (160)
T ss_dssp --S-EEEEEEET
T ss_pred ccceEEEEEEcC
Confidence 467787777744
No 20
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=38.61 E-value=1.6e+02 Score=27.72 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=58.5
Q ss_pred eEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCCeeEEEEEecCceeEEEeeeeccceEEecCC-CCeEEEEEEcCCcc
Q psy8312 61 NILQINCKLFLYDSVK-TWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPS-DNSVRLTAIENGQA 138 (145)
Q Consensus 61 ~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~~~RivmR~d~~~rvllN~~i~~~m~~~~~~-~k~v~~~a~~~~~~ 138 (145)
.++...+-||+|+.-. .+..- --.+++-....++.-..+|-.+--+++|-..|-+.|++.-.. ..++.|.-++++-.
T Consensus 230 ~~~~~~~~l~~yd~~~e~Filq-~p~Vkv~i~d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~~tFvwny~~~n~~ 308 (776)
T COG5167 230 TLYSKNGVLSRYDTATERFILQ-KPHVKVVIVDDGKEVFWIRIETRDDVILFEEVRTETNPYFDQKNTTFVWNYMEDNVF 308 (776)
T ss_pred eeeeecceEEeecchhheeeec-CCceEEEEEecCCeEEEEEEecccceeehheeccccCcceecccceeeeeeecccch
Confidence 6799999999998753 22111 112233233334677777777767788999999999877543 45688999988888
Q ss_pred eEEEEeC
Q psy8312 139 KVYLVKV 145 (145)
Q Consensus 139 ~~~likv 145 (145)
-+|+|||
T Consensus 309 ~s~~LrF 315 (776)
T COG5167 309 HSFSLRF 315 (776)
T ss_pred heeeeee
Confidence 8999987
No 21
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=36.32 E-value=1.6e+02 Score=21.16 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=48.4
Q ss_pred eEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC---eeEEEEEecCceeEEEeeeeccceEEecCC
Q psy8312 61 NILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS---LSRIVIRVVGSLRVILNTKIWAEMVVQKPS 124 (145)
Q Consensus 61 ~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~---~~RivmR~d~~~rvllN~~i~~~m~~~~~~ 124 (145)
++-.+=+.||.-.++. .|.-...|.|-+-+.... -.||+=... .+++..+-|+.+|.++..-
T Consensus 6 il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~--~~v~weqElY~~f~y~~~r 71 (105)
T cd01205 6 ILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKA--NRIIWEQELYDNFEYQQPR 71 (105)
T ss_pred EEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccC--CcEEEEEEcccCcEEccCC
Confidence 4556679999886653 899999999999776543 456665554 8899999999999999753
No 22
>KOG3671|consensus
Probab=33.07 E-value=37 Score=31.15 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=41.6
Q ss_pred eeEEEEccCC-Cceeeee-EEEEeeecCCC---eeEEEEEecCceeEEEeeeeccceEEec
Q psy8312 67 CKLFLYDSVK-TWIELGR-GQLRLNDINNS---LSRIVIRVVGSLRVILNTKIWAEMVVQK 122 (145)
Q Consensus 67 aKLy~f~~~~-~WkerG~-G~lkl~~~~~~---~~RivmR~d~~~rvllN~~i~~~m~~~~ 122 (145)
++||.-+.+. .|.-+|. |.|-|.+.-.. -.||+--.+ .|||..+.|+.+|.|..
T Consensus 45 VqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q 103 (569)
T KOG3671|consen 45 VQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQ 103 (569)
T ss_pred HHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceecc
Confidence 4577777665 8999999 99888775543 456665554 56999999999999986
No 23
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=29.58 E-value=40 Score=32.46 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEeeeEEEEccCC-CceeeeeEEEEeee
Q psy8312 63 LQINCKLFLYDSVK-TWIELGRGQLRLND 90 (145)
Q Consensus 63 f~~raKLy~f~~~~-~WkerG~G~lkl~~ 90 (145)
+..+-=+|+||... .|.+.|+|.+|-.-
T Consensus 205 ~gd~IPAW~FD~ktG~Wv~~G~G~Vk~~g 233 (807)
T PF10577_consen 205 HGDSIPAWRFDEKTGAWVKSGLGMVKREG 233 (807)
T ss_pred CCCeeeeeEecCCcceeEecceEEEEeeC
Confidence 34456689999877 89999999998653
No 24
>COG3549 HigB Plasmid maintenance system killer protein [General function prediction only]
Probab=28.25 E-value=1.2e+02 Score=21.71 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=42.9
Q ss_pred CceeecccccccceeEEEEeeeEEEEccCCCceeeeeEEEEeeecCCCeeEEEEEecCceeEEEeeeec
Q psy8312 47 YEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIW 115 (145)
Q Consensus 47 l~~vev~tGEE~E~~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~~~RivmR~d~~~rvllN~~i~ 115 (145)
.-+.++...-.+++.+....++.|..-++ ...|.-.||||+ ++||+||=++. ...+|.+|.
T Consensus 31 ~rkL~~i~aA~~~~dlr~ppsn~~E~L~g---d~~g~ySIrvN~----QwrLiF~~~~~-~~a~~v~i~ 91 (94)
T COG3549 31 FRKLQMIDAAPNEEDLRAPPSNHFEKLGG---DLKGLYSIRVNQ----QWRLIFRWEGG-GDAVNVYID 91 (94)
T ss_pred HHHHHHHhccCCHHHhcCCchhhHHHcCC---CccCcEEEEECC----EEEEEEEeCCC-CceEEEEec
Confidence 34455555666777777777888776554 345666788876 89999999876 566777664
No 25
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=23.19 E-value=2.6e+02 Score=19.29 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=31.6
Q ss_pred eeEEEEccCCCceeee--eEEEEeeecCCCeeEEEEEe-cCceeEEEeeeeccceEEecCCC-CeEEEEEEcCCcceEEE
Q psy8312 67 CKLFLYDSVKTWIELG--RGQLRLNDINNSLSRIVIRV-VGSLRVILNTKIWAEMVVQKPSD-NSVRLTAIENGQAKVYL 142 (145)
Q Consensus 67 aKLy~f~~~~~WkerG--~G~lkl~~~~~~~~RivmR~-d~~~rvllN~~i~~~m~~~~~~~-k~v~~~a~~~~~~~~~l 142 (145)
|+.|.|.-... -+.| +|.+.+.... ...+++... |+-.||.-|=.|+..=.+...++ +.+.+.|.+....+++-
T Consensus 8 ~~~~~~~Vp~~-l~~g~~lg~V~f~dC~-~~~~~~~~ssDpdF~V~~DGsVy~~r~v~l~~~~~~F~V~a~D~~~~~~~~ 85 (90)
T PF08758_consen 8 QKKYTFEVPSN-LEAGQPLGKVNFEDCT-GRRRVIFESSDPDFRVLEDGSVYAKRPVQLSSEQRSFTVHAWDSQTQEQKE 85 (90)
T ss_dssp S-EEEE----S-S-SS--EEE---B--S-S---EEEE---SEEEEETTTEEEEES--S-SSS-EEEEEEEEETTTTEEEE
T ss_pred cceEEEEcCch-hhCCcEEEEEEeccCC-CCCceEEecCCCCEEEcCCCeEEEeeeEecCCCceEEEEEEECCCCCeEEE
Confidence 55566644322 3333 4555555553 345566444 66677777777777666666543 56777777433333343
Q ss_pred E
Q psy8312 143 V 143 (145)
Q Consensus 143 i 143 (145)
|
T Consensus 86 v 86 (90)
T PF08758_consen 86 V 86 (90)
T ss_dssp E
T ss_pred E
Confidence 3
No 26
>PHA02991 HT motif gene family protein; Provisional
Probab=21.18 E-value=42 Score=24.92 Aligned_cols=17 Identities=35% Similarity=0.796 Sum_probs=14.1
Q ss_pred CceeeeeEEEEeeecCC
Q psy8312 77 TWIELGRGQLRLNDINN 93 (145)
Q Consensus 77 ~WkerG~G~lkl~~~~~ 93 (145)
=|+|+|+|.++-+.-..
T Consensus 13 Fwke~~igdi~t~~is~ 29 (120)
T PHA02991 13 FWKEIGIGDIKTLEISN 29 (120)
T ss_pred hhhhhccCcEEEEEeec
Confidence 39999999999877554
Done!