Query psy8312
Match_columns 145
No_of_seqs 134 out of 618
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 00:32:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m1i_B RAN-specific GTPase-act 100.0 3.5E-37 1.2E-41 241.8 13.0 106 40-145 54-168 (191)
2 2crf_A RAN binding protein 3; 100.0 4.2E-37 1.4E-41 233.3 12.8 105 41-145 8-120 (150)
3 2y8g_A Ranbp3-B, RAN-binding p 100.0 3.9E-37 1.3E-41 230.6 10.3 99 47-145 2-108 (138)
4 1rrp_B Nuclear pore complex pr 100.0 3.3E-36 1.1E-40 224.2 12.9 104 42-145 4-115 (134)
5 4hat_B RAN-specific GTPase-act 100.0 2.2E-36 7.7E-41 227.2 12.1 104 42-145 5-117 (140)
6 1k5d_B RAN-specific GTPase-act 100.0 1.7E-35 6E-40 233.9 12.0 105 41-145 27-142 (201)
7 3n7c_A ABR034WP; nuclear pore 100.0 4.3E-35 1.5E-39 217.7 12.2 96 50-145 1-102 (130)
8 1xke_A RAN-binding protein 2; 100.0 1.9E-34 6.5E-39 213.8 13.1 93 53-145 1-101 (130)
9 2ec1_A Nucleoporin 50 kDa; ran 100.0 8.4E-33 2.9E-37 204.0 10.6 94 51-145 4-106 (125)
10 1qc6_A EVH1 domain from ENA/VA 99.3 5.8E-12 2E-16 92.8 9.7 74 58-131 2-82 (130)
11 1ddw_A GLGF-domain protein hom 98.9 5.1E-08 1.7E-12 71.0 12.1 72 58-131 2-78 (120)
12 1i2h_A PSD-ZIP45(homer-1C/VESL 98.6 2.4E-07 8.1E-12 71.1 9.9 73 58-132 7-84 (168)
13 1evh_A WH1 domain, protein (ME 98.5 5.6E-07 1.9E-11 64.6 8.8 74 58-131 2-81 (112)
14 1egx_A VAsp, vasodilator-stimu 98.5 5.4E-07 1.9E-11 65.0 8.1 73 59-131 3-83 (115)
15 1xod_A Spred1; sprouty, EVH1, 98.2 4.9E-06 1.7E-10 60.2 7.6 75 58-132 2-86 (118)
16 2jp2_A Spred-2, sprouty-relate 98.1 1.1E-05 3.7E-10 59.1 8.3 76 57-132 10-95 (126)
17 3syx_A Sprouty-related, EVH1 d 97.4 0.00087 3E-08 49.3 8.5 71 61-131 12-92 (130)
18 1mke_A WIP - N-WAsp, fusion pr 94.1 0.24 8.2E-06 37.0 7.9 69 60-130 41-112 (152)
19 2ifs_A N-WAsp, wiskott-aldrich 93.8 0.21 7.3E-06 37.9 7.3 68 61-130 59-129 (169)
20 2lyd_A Decapping protein 1; DC 77.7 17 0.00059 26.1 10.0 67 61-130 31-102 (134)
21 2qkl_A DCP1 protein, SPBC3B9.2 67.4 31 0.0011 24.5 8.0 65 64-131 30-97 (127)
22 2hzs_I RNA polymerase II media 39.8 7 0.00024 20.5 0.2 8 3-10 1-8 (27)
23 1tqz_A Necap1; endocytosis, st 34.6 1.3E+02 0.0044 21.7 7.2 80 56-136 5-100 (133)
No 1
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-37 Score=241.77 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=91.5
Q ss_pred hhcccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccc
Q psy8312 40 ARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAE 117 (145)
Q Consensus 40 ~~~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~ 117 (145)
...|++.|++|++.||||+|++||++|||||+|+++. +|+|||+|.||||+|+++ ++|||||+|+++||||||+|+++
T Consensus 54 ~f~Pvv~L~~vev~tGEEdEe~lf~~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~~ 133 (191)
T 3m1i_B 54 HFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPE 133 (191)
T ss_dssp -------CCCCCCCCSCTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTT
T ss_pred CcccceecccccccCCCcceeeeeEEeeEEEEEecCCCCccceeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCCC
Confidence 3566777899999999999999999999999999765 899999999999999875 99999999999999999999999
Q ss_pred eEEecC--CCCeEEEEEE---cCC--cceEEEEeC
Q psy8312 118 MVVQKP--SDNSVRLTAI---ENG--QAKVYLVKV 145 (145)
Q Consensus 118 m~~~~~--~~k~v~~~a~---~~~--~~~~~likv 145 (145)
|++++. ++++|+|+|. .+| ++++|+|||
T Consensus 134 m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRF 168 (191)
T 3m1i_B 134 YTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRF 168 (191)
T ss_dssp CCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEC
T ss_pred cEEeECCCCCceEEEEecCcCCCCCcceEEEEEEE
Confidence 999987 4689999974 344 589999998
No 2
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=4.2e-37 Score=233.32 Aligned_cols=105 Identities=50% Similarity=0.869 Sum_probs=97.5
Q ss_pred hcccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCC-----CeeEEEEEecCceeEEEeeee
Q psy8312 41 RACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINN-----SLSRIVIRVVGSLRVILNTKI 114 (145)
Q Consensus 41 ~~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~-----~~~RivmR~d~~~rvllN~~i 114 (145)
.++++.|++|++.||||+|++||++|||||+|++++ +|+|||+|+||||+++. .++|||||+|+++||||||+|
T Consensus 8 ~~~~~~l~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i 87 (150)
T 2crf_A 8 TARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 87 (150)
T ss_dssp SSCCSCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEEC
T ss_pred CccccCcccccccCCCcCeEEEEEEEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeec
Confidence 366888999999999999999999999999998766 89999999999999862 389999999999999999999
Q ss_pred ccceEEecCCCCeEEEEEE--cCCcceEEEEeC
Q psy8312 115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV 145 (145)
Q Consensus 115 ~~~m~~~~~~~k~v~~~a~--~~~~~~~~likv 145 (145)
+++|++++.++++|+|+|+ +++.+++|+|||
T Consensus 88 ~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirf 120 (150)
T 2crf_A 88 WAQMQIDKASEKSIHITAMDTEDQGVKVFLISA 120 (150)
T ss_dssp CTTCCEECCSSSEEEEEEEBSSSCCEEEEEEEC
T ss_pred cCCceeecCCCCEEEEEeecCCCCceEEEEEEE
Confidence 9999999888999999999 467899999997
No 3
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=100.00 E-value=3.9e-37 Score=230.58 Aligned_cols=99 Identities=51% Similarity=0.915 Sum_probs=81.0
Q ss_pred CceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCC-----CeeEEEEEecCceeEEEeeeeccceEE
Q psy8312 47 YEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINN-----SLSRIVIRVVGSLRVILNTKIWAEMVV 120 (145)
Q Consensus 47 l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~-----~~~RivmR~d~~~rvllN~~i~~~m~~ 120 (145)
|++|++.||||+|++||++|||||+|++++ +|+|||+|.||||+|++ .++|||||+|+++||||||+|+++|++
T Consensus 2 l~~v~v~tGEE~E~~~~~~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~ 81 (138)
T 2y8g_A 2 AMKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQI 81 (138)
T ss_dssp ------------CEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCE
T ss_pred CCcccccCCCcCcEEEEEEEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCcee
Confidence 688999999999999999999999999865 89999999999999873 389999999999999999999999999
Q ss_pred ecCCCCeEEEEEE--cCCcceEEEEeC
Q psy8312 121 QKPSDNSVRLTAI--ENGQAKVYLVKV 145 (145)
Q Consensus 121 ~~~~~k~v~~~a~--~~~~~~~~likv 145 (145)
++.++|+|+|+|+ +++.+++|+|||
T Consensus 82 ~~~~~k~~~~~~~d~~d~~~~~~lirf 108 (138)
T 2y8g_A 82 DKASEKSIRITAMDTEDQGVKVFLISA 108 (138)
T ss_dssp EEEETTEEEEECCC--CCCCCEEEEEC
T ss_pred ecCCCCEEEEEEecCCCCceEEEEEEE
Confidence 9888999999999 467899999997
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=3.3e-36 Score=224.19 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=94.6
Q ss_pred cccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceE
Q psy8312 42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMV 119 (145)
Q Consensus 42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~ 119 (145)
|.+.++++|++.||||+|++||++|||||+|++++ +|+|||+|.||||+|+++ ++|||||+|+++||||||+|+++|+
T Consensus 4 pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~ 83 (134)
T 1rrp_B 4 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMK 83 (134)
T ss_dssp CSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCC
T ss_pred cceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCce
Confidence 55555679999999999999999999999998766 899999999999999865 9999999999999999999999999
Q ss_pred EecC--CCCeEEEEEE----cCCcceEEEEeC
Q psy8312 120 VQKP--SDNSVRLTAI----ENGQAKVYLVKV 145 (145)
Q Consensus 120 ~~~~--~~k~v~~~a~----~~~~~~~~likv 145 (145)
++++ ++++|+|+++ +++++++|+|||
T Consensus 84 ~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irf 115 (134)
T 1rrp_B 84 LTPNAGSDRSFVWHALDYADELPKPEQLAIRF 115 (134)
T ss_dssp CBCSTTCTTEEEEEEEECTTSSCEEEEEEEEC
T ss_pred EeecCCCCeEEEEEcccccCCCCceEEEEEEE
Confidence 9986 4789999998 256899999997
No 5
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=100.00 E-value=2.2e-36 Score=227.18 Aligned_cols=104 Identities=26% Similarity=0.365 Sum_probs=82.1
Q ss_pred cccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceE
Q psy8312 42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMV 119 (145)
Q Consensus 42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~ 119 (145)
.|++.|++|++.||||+|+++|++|||||+|++++ +|+|||+|.||||+|+++ ++|||||+|+++||||||+|+++|+
T Consensus 5 ~pvv~l~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m~ 84 (140)
T 4hat_B 5 EPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYT 84 (140)
T ss_dssp --------------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCC
T ss_pred cceeEcceecccCCCcCeeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCeE
Confidence 45666799999999999999999999999999765 899999999999999876 9999999999999999999999999
Q ss_pred EecC--CCCeEEEEEE---cCC--cceEEEEeC
Q psy8312 120 VQKP--SDNSVRLTAI---ENG--QAKVYLVKV 145 (145)
Q Consensus 120 ~~~~--~~k~v~~~a~---~~~--~~~~~likv 145 (145)
+++. ++++|+|++. .+| ++++|+|||
T Consensus 85 ~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRf 117 (140)
T 4hat_B 85 LKPNVGSDRSWVYACTADIAEGEAEAFTFAIRF 117 (140)
T ss_dssp CBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEE
T ss_pred EeEcCCCCceEEEEccccCCCCCCceEEEEEEE
Confidence 9987 4689999864 344 689999997
No 6
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=100.00 E-value=1.7e-35 Score=233.86 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=94.0
Q ss_pred hcccccCceeecccccccceeEEEEeeeEEEE--ccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeecc
Q psy8312 41 RACKRKYEAVAVVTGEEEEVNILQINCKLFLY--DSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWA 116 (145)
Q Consensus 41 ~~~~~~l~~vev~tGEE~E~~vf~~raKLy~f--~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~ 116 (145)
..|++.|+++++.||||+|++||++|||||+| +++. +|+|||+|.||||+|+++ ++|||||+|+++||||||+|++
T Consensus 27 f~Piv~L~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~ 106 (201)
T 1k5d_B 27 FEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITP 106 (201)
T ss_dssp CCCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCS
T ss_pred cccccccccccccCCCccceEEEEEeeeEEEecccccCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecC
Confidence 35577899999999999999999999999999 5444 899999999999999865 9999999999999999999999
Q ss_pred ceEEecC--CCCeEEEEEE---c--CCcceEEEEeC
Q psy8312 117 EMVVQKP--SDNSVRLTAI---E--NGQAKVYLVKV 145 (145)
Q Consensus 117 ~m~~~~~--~~k~v~~~a~---~--~~~~~~~likv 145 (145)
+|++.++ ++++|+|+++ . +.++++|+|||
T Consensus 107 ~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRf 142 (201)
T 1k5d_B 107 MMELKPNAGSDRAWVWNTHADFADECPKPELLAIRF 142 (201)
T ss_dssp SCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEEC
T ss_pred CceeeecCCCCceEEEEeccccCCCCCceEEEEEEE
Confidence 9999986 5789999873 3 35789999998
No 7
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=100.00 E-value=4.3e-35 Score=217.65 Aligned_cols=96 Identities=26% Similarity=0.446 Sum_probs=77.4
Q ss_pred eecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCC-C-eeEEEEEecCceeEEEeeeeccceEEecCC--
Q psy8312 50 VAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINN-S-LSRIVIRVVGSLRVILNTKIWAEMVVQKPS-- 124 (145)
Q Consensus 50 vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~-~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~-- 124 (145)
|+++||||+|++||++|||||+|++++ +|+|||+|+||||++++ + ++|||||+|+++|||||++|+++|++++.+
T Consensus 1 iev~tGEE~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~ 80 (130)
T 3n7c_A 1 MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDAD 80 (130)
T ss_dssp ---------CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTT
T ss_pred CcccCCCcCeeEEEEEEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCC
Confidence 689999999999999999999999876 89999999999999984 4 899999999999999999999999999874
Q ss_pred -CCeEEEEEEcCCcceEEEEeC
Q psy8312 125 -DNSVRLTAIENGQAKVYLVKV 145 (145)
Q Consensus 125 -~k~v~~~a~~~~~~~~~likv 145 (145)
.+.|.|+++++|++++|+|||
T Consensus 81 ~~~~v~~~~~~dgk~~~~~lrf 102 (130)
T 3n7c_A 81 NENLIKWPIITDGKLETFIIKV 102 (130)
T ss_dssp CTTEEEEEEEETTEEEEEEEEC
T ss_pred CccEEEEEecCCCceEEEEEEE
Confidence 355777777889999999998
No 8
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=1.9e-34 Score=213.78 Aligned_cols=93 Identities=26% Similarity=0.318 Sum_probs=85.3
Q ss_pred ccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecC--CCCeE
Q psy8312 53 VTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKP--SDNSV 128 (145)
Q Consensus 53 ~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~--~~k~v 128 (145)
.||||+|++||++|||||+|++++ +|+|||+|.||||+|+++ ++|||||+|+++||||||+|+++|+++++ ++++|
T Consensus 1 gtGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~ 80 (130)
T 1xke_A 1 GSGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAW 80 (130)
T ss_dssp CCSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCE
T ss_pred CCCCcceEEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEE
Confidence 389999999999999999999765 899999999999999865 99999999999999999999999999986 57899
Q ss_pred EEEEE----cCCcceEEEEeC
Q psy8312 129 RLTAI----ENGQAKVYLVKV 145 (145)
Q Consensus 129 ~~~a~----~~~~~~~~likv 145 (145)
+|++. +++++++|+|||
T Consensus 81 ~~~~~d~~d~~~~~~~~~irf 101 (130)
T 1xke_A 81 MWLASDFSDGDAKLEQLAAKF 101 (130)
T ss_dssp EEEEEECSSSCSEEEEEEEEC
T ss_pred EEEecccCCCCCceEEEEEEE
Confidence 99986 246899999997
No 9
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=203.98 Aligned_cols=94 Identities=22% Similarity=0.350 Sum_probs=79.8
Q ss_pred ecccccccceeEEEEeeeEEEEccCCCceeeeeEEEEeeecCCCeeEEEEEecCc-eeEEEeeeeccceEEecCCCCeEE
Q psy8312 51 AVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGS-LRVILNTKIWAEMVVQKPSDNSVR 129 (145)
Q Consensus 51 ev~tGEE~E~~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~~~RivmR~d~~-~rvllN~~i~~~m~~~~~~~k~v~ 129 (145)
...||||+|++||++|||||+|+.. +|+|||+|+||||++++.++|||||+|++ +||||||+|+++|++++++++.+.
T Consensus 4 ~~~tgEE~E~~lf~~raKLf~~~~~-~WkERGvG~lki~~~k~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~ 82 (125)
T 2ec1_A 4 GSSGEVKEEDAFYSKKCKLFYKKDN-EFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVL 82 (125)
T ss_dssp ----CCCCCSCSEEEEEEEEEECSS-SEEEEEEEEEEEEECSSSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEE
T ss_pred CCcCCccCceeEEEEeeEEEEecCC-CcccccEEEEEeeecCCCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEE
Confidence 4579999999999999999999664 89999999999999987799999999996 799999999999999998655555
Q ss_pred EEEE--c--CCc----ceEEEEeC
Q psy8312 130 LTAI--E--NGQ----AKVYLVKV 145 (145)
Q Consensus 130 ~~a~--~--~~~----~~~~likv 145 (145)
+.++ + +++ +++|+|||
T Consensus 83 ~~~~~~~~~d~~~~~~~~~~~lrf 106 (125)
T 2ec1_A 83 IVCVPNPPIDEKNATMPVTMLIRV 106 (125)
T ss_dssp EEECCSSCSCSSSSSSCEEEEEEC
T ss_pred EEEccCCcccCCCCCceEEEEEEE
Confidence 5455 3 554 89999997
No 10
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.34 E-value=5.8e-12 Score=92.79 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=64.5
Q ss_pred cceeEEEEeeeEEEEccCC-CceeeeeE-----EEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312 58 EEVNILQINCKLFLYDSVK-TWIELGRG-----QLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRL 130 (145)
Q Consensus 58 ~E~~vf~~raKLy~f~~~~-~WkerG~G-----~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~ 130 (145)
.|.+||++||+||.++.+. .|..+|.| .++|+++..+ .+||++|+.+..++|+|+.|+++|.+.+....+..|
T Consensus 2 ~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w 81 (130)
T 1qc6_A 2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQW 81 (130)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEE
T ss_pred CceeEEEEEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEE
Confidence 3789999999999999876 89999998 7888887755 899999998899999999999999999887888877
Q ss_pred E
Q psy8312 131 T 131 (145)
Q Consensus 131 ~ 131 (145)
.
T Consensus 82 ~ 82 (130)
T 1qc6_A 82 R 82 (130)
T ss_dssp E
T ss_pred E
Confidence 4
No 11
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=98.85 E-value=5.1e-08 Score=71.00 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=59.9
Q ss_pred cceeEEEEeeeEEEEccCC--CceeeeeEE--EEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312 58 EEVNILQINCKLFLYDSVK--TWIELGRGQ--LRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT 131 (145)
Q Consensus 58 ~E~~vf~~raKLy~f~~~~--~WkerG~G~--lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~ 131 (145)
.|.+||..||.||.+|+.+ .|...|.|. +.|.++... .+||+.+++ .++++|+.|.++|.+.++..++..|.
T Consensus 2 ~E~~i~~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~~~~yRIv~~~~--~~vv~n~~i~~~l~y~~a~p~FhqW~ 78 (120)
T 1ddw_A 2 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTKTSQKFGQWA 78 (120)
T ss_dssp CEEEEEEEEEEEEEECTTTSCSEEESCSSCEEEEEEEETTTTEEEEEEEET--TEEEEEEECCTTCCCEECSSSEEEEE
T ss_pred CceEEEEEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCCCCEEEEEEccC--CEEEEeCEecCCcEEeeCCccccEEE
Confidence 4789999999999998854 899955544 446665543 799999885 69999999999999999989998887
No 12
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=98.62 E-value=2.4e-07 Score=71.12 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=60.3
Q ss_pred cceeEEEEeeeEEEEccCC--CceeeeeEEEE--eeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEEE
Q psy8312 58 EEVNILQINCKLFLYDSVK--TWIELGRGQLR--LNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTA 132 (145)
Q Consensus 58 ~E~~vf~~raKLy~f~~~~--~WkerG~G~lk--l~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a 132 (145)
.|.+||..||.||.+|..+ .|...|.|.++ |.++... .+||+.|++ .++++|+.|.++|.|.++..++..|..
T Consensus 7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~rnsyRIvg~~d--~kvvinc~I~~~l~Y~kasp~FHqW~d 84 (168)
T 1i2h_A 7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTKTSQKFGQWAD 84 (168)
T ss_dssp SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEEEEET--TEEEEEEECCTTCCEEEEETTEEEEEE
T ss_pred cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEEcCCCCEEEEEEccC--CEEEEecEecCCcEEeeCCcccceeec
Confidence 4778999999999998864 79995555554 6655543 799999985 599999999999999998888888875
No 13
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=98.51 E-value=5.6e-07 Score=64.59 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=62.3
Q ss_pred cceeEEEEeeeEEEEccCC-Cceeee--eEE--EEeeecCC-CeeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312 58 EEVNILQINCKLFLYDSVK-TWIELG--RGQ--LRLNDINN-SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT 131 (145)
Q Consensus 58 ~E~~vf~~raKLy~f~~~~-~WkerG--~G~--lkl~~~~~-~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~ 131 (145)
.|.+|+++||.+|.+|+.+ .|.-.| .|. +.|.++.. ..+||+.|.-+..++++|+.|+++|.+.+....+-.|.
T Consensus 2 ~e~~i~~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~ 81 (112)
T 1evh_A 2 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWR 81 (112)
T ss_dssp CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEE
T ss_pred CceeEEEEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeEe
Confidence 3789999999999999877 899988 344 77777653 38999999977889999999999999998877776665
No 14
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=98.48 E-value=5.4e-07 Score=64.96 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=62.5
Q ss_pred ceeEEEEeeeEEEEccCC-Cceeeee---E--EEEeeecCC-CeeEEEEEecC-ceeEEEeeeeccceEEecCCCCeEEE
Q psy8312 59 EVNILQINCKLFLYDSVK-TWIELGR---G--QLRLNDINN-SLSRIVIRVVG-SLRVILNTKIWAEMVVQKPSDNSVRL 130 (145)
Q Consensus 59 E~~vf~~raKLy~f~~~~-~WkerG~---G--~lkl~~~~~-~~~RivmR~d~-~~rvllN~~i~~~m~~~~~~~k~v~~ 130 (145)
|.+|+++||.+|.+|+.+ .|.-.|. | .+.|.++.. ..+||+.|.-+ ..++++|+.|+++|.+.+....+-.|
T Consensus 3 e~~i~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w 82 (115)
T 1egx_A 3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQW 82 (115)
T ss_dssp SCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEE
T ss_pred ceeEEEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceEE
Confidence 678999999999998877 8999886 4 488877654 38999999977 88999999999999999887777666
Q ss_pred E
Q psy8312 131 T 131 (145)
Q Consensus 131 ~ 131 (145)
.
T Consensus 83 ~ 83 (115)
T 1egx_A 83 R 83 (115)
T ss_dssp E
T ss_pred e
Confidence 5
No 15
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=98.20 E-value=4.9e-06 Score=60.18 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=58.0
Q ss_pred cceeEEEEeeeEEEEccCC-CceeeeeEEE---EeeecC---C---CeeEEEEEecCceeEEEeeeeccceEEecCCCCe
Q psy8312 58 EEVNILQINCKLFLYDSVK-TWIELGRGQL---RLNDIN---N---SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNS 127 (145)
Q Consensus 58 ~E~~vf~~raKLy~f~~~~-~WkerG~G~l---kl~~~~---~---~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~ 127 (145)
.|..|+++||.+|.+|..+ .|.-.|.|-| .|...+ + ..+||+.|.-+..++++|+.|.++|.+.+....+
T Consensus 2 ~~~~i~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~F 81 (118)
T 1xod_A 2 SDDSYARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTF 81 (118)
T ss_dssp ---CCEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTE
T ss_pred CCccEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcc
Confidence 3678999999999998766 8999876664 454443 2 2799999997778999999999999999887777
Q ss_pred EEEEE
Q psy8312 128 VRLTA 132 (145)
Q Consensus 128 v~~~a 132 (145)
-.|..
T Consensus 82 h~w~~ 86 (118)
T 1xod_A 82 HHWRI 86 (118)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 76654
No 16
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.13 E-value=1.1e-05 Score=59.08 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=60.8
Q ss_pred ccceeEEEEeeeEEEEccCC-CceeeeeEE---EEeeecC---C---CeeEEEEEecCceeEEEeeeeccceEEecCCCC
Q psy8312 57 EEEVNILQINCKLFLYDSVK-TWIELGRGQ---LRLNDIN---N---SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDN 126 (145)
Q Consensus 57 E~E~~vf~~raKLy~f~~~~-~WkerG~G~---lkl~~~~---~---~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k 126 (145)
..|..|+++||-+|.+|..+ .|.-.|.|- +.|-..+ + ..+||+.+.-+..++++|+.|.++|.+.++...
T Consensus 10 ~~~~~i~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~ 89 (126)
T 2jp2_A 10 DDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPT 89 (126)
T ss_dssp SCCSEEEEEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETT
T ss_pred CCcceEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCc
Confidence 46789999999999998766 899988776 3343332 2 279999999778899999999999999987777
Q ss_pred eEEEEE
Q psy8312 127 SVRLTA 132 (145)
Q Consensus 127 ~v~~~a 132 (145)
+-.|..
T Consensus 90 FH~w~~ 95 (126)
T 2jp2_A 90 FHHWKV 95 (126)
T ss_dssp EEEEEC
T ss_pred ceEEEc
Confidence 666653
No 17
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=97.40 E-value=0.00087 Score=49.29 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=55.6
Q ss_pred eEEEEeeeEEEEccCC-CceeeeeE---EEEeeec--C-C---CeeEEEEEecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312 61 NILQINCKLFLYDSVK-TWIELGRG---QLRLNDI--N-N---SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRL 130 (145)
Q Consensus 61 ~vf~~raKLy~f~~~~-~WkerG~G---~lkl~~~--~-~---~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~ 130 (145)
..|.+||-+|.+|+.+ .|.--|-| .+.|-+. . . +.+||+=|+-+-..|+||+.|.++|.+.++..++=.|
T Consensus 12 ~~~~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqW 91 (130)
T 3syx_A 12 SYARVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHW 91 (130)
T ss_dssp EEEEEEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEE
T ss_pred eeeEEEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEecccccccc
Confidence 5799999999999987 89987533 4445442 2 1 2799999976667899999999999999987776555
Q ss_pred E
Q psy8312 131 T 131 (145)
Q Consensus 131 ~ 131 (145)
.
T Consensus 92 r 92 (130)
T 3syx_A 92 K 92 (130)
T ss_dssp E
T ss_pred c
Confidence 4
No 18
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=94.09 E-value=0.24 Score=37.02 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=53.9
Q ss_pred eeEEEEeeeEEEEccCCCceeeeeEEEEeeecCCC---eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312 60 VNILQINCKLFLYDSVKTWIELGRGQLRLNDINNS---LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRL 130 (145)
Q Consensus 60 ~~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~---~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~ 130 (145)
.++-..=|.||.-+.++.|.-.+.|.+-+.+.... -.||+=... ++++.++.|+.+|.+...-.....|
T Consensus 41 ~~lataVaqLy~a~~~~~W~~~~~Gal~~VkD~~~rsyf~RlvDl~~--~~viweqELY~~f~Y~~~r~~FHtF 112 (152)
T 1mke_A 41 VTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPRGYFHTF 112 (152)
T ss_dssp EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSS--CSEEEEEECCSSCCCBCSSSSEEEE
T ss_pred cEEEEeeEEEEEECCCCceEecCceEEEEEEECCCCeEEEEEEEccC--CeEEEEeecccceeeccCCCeEEEE
Confidence 46777889999998766899999999988776543 358887764 5899999999999997654443333
No 19
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=93.85 E-value=0.21 Score=37.87 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=53.2
Q ss_pred eEEEEeeeEEEEccCCCceeeeeEEEEeeecCCC---eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312 61 NILQINCKLFLYDSVKTWIELGRGQLRLNDINNS---LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRL 130 (145)
Q Consensus 61 ~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~---~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~ 130 (145)
++-..=|.||.-+.++.|.-.+.|.|-+.+.... -.||+=..+ ++++.++.|+.+|.+...-.....|
T Consensus 59 ~lataVaqLy~a~~~~~W~~~~~Gal~~vkD~~~rsyf~RlvDl~~--~~vvweqELY~~f~Y~~~r~~FHtF 129 (169)
T 2ifs_A 59 TMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPRGYFHTF 129 (169)
T ss_dssp EEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEEETTT--CCCCEEEECCSSCCCBCCCSSEEEE
T ss_pred EEEEEEEEEEEECCCCeeEecCceEEEEEEECCCCeEEEEEEEccC--CeEEEEeecccceeeccCCCeEEEe
Confidence 5667779999998766899999999988776543 358888874 5899999999999997654443333
No 20
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=77.65 E-value=17 Score=26.11 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=44.1
Q ss_pred eEEEE-eeeEEEEccCC-Cceeeee-EEEEeeecCCC-eeEEEE-EecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312 61 NILQI-NCKLFLYDSVK-TWIELGR-GQLRLNDINNS-LSRIVI-RVVGSLRVILNTKIWAEMVVQKPSDNSVRL 130 (145)
Q Consensus 61 ~vf~~-raKLy~f~~~~-~WkerG~-G~lkl~~~~~~-~~Rivm-R~d~~~rvllN~~i~~~m~~~~~~~k~v~~ 130 (145)
.++.+ .|-||.|+.++ +|...|+ |.|.|-..... ++.|++ -+-++..++. .|.++|.++.. +..+.+
T Consensus 31 Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~~~--~l~~~~~~e~~-~~~li~ 102 (134)
T 2lyd_A 31 IVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFVE--PITGSLELQSQ-PPFLLY 102 (134)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEETTTTEEEEE--ECCSSCEEEEE-TTEEEE
T ss_pred HHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcCCCCcceeE--EcCCCcEEEee-CCEEEE
Confidence 44444 69999999887 8988886 78887665433 566444 3344444554 47788888865 455554
No 21
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=67.39 E-value=31 Score=24.55 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=37.5
Q ss_pred EEeeeEEEEccCC-Cceeeee-EEEEeeecCCCeeEEE-EEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312 64 QINCKLFLYDSVK-TWIELGR-GQLRLNDINNSLSRIV-IRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT 131 (145)
Q Consensus 64 ~~raKLy~f~~~~-~WkerG~-G~lkl~~~~~~~~Riv-mR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~ 131 (145)
...|-||.|+..+ +|...|+ |.|-|-.....++.++ |-+.++-.++. .|.++|.++.. +..+.+.
T Consensus 30 a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~~P~~~~iVlNR~~~~n~~~--~i~~~~~~e~~-~~~l~~r 97 (127)
T 2qkl_A 30 ASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARVGYVILNRNSPENLYL--FINHPSNVHLV-DRYLIHR 97 (127)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEETTCCEEEEEEESSSSCCEEE--EECSGGGEEEE-TTEEEEE
T ss_pred CCeEEEEEecCCCCceEEcCcEEEEEEEEccCCceEEEEEcCCCCcCeeE--ecCCCceEEEe-CCEEEEE
Confidence 3479999999876 8999987 7777766553355543 33344444443 46777777754 4555544
No 22
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=39.77 E-value=7 Score=20.45 Aligned_cols=8 Identities=38% Similarity=0.887 Sum_probs=2.1
Q ss_pred CCCCCCCC
Q psy8312 3 QNPSETFD 10 (145)
Q Consensus 3 ~~~~~~fg 10 (145)
++|+|||.
T Consensus 1 skpskpfn 8 (27)
T 2hzs_I 1 SKPSKPFN 8 (27)
T ss_dssp -----CCC
T ss_pred CCCCCCcC
Confidence 36788874
No 23
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=34.56 E-value=1.3e+02 Score=21.69 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=55.4
Q ss_pred cccceeEEEEe-eeEEEEccCC--------Ccee---eeeEEEEeeecCCCeeEEEEEecCceeEEEeeee--ccceEEe
Q psy8312 56 EEEEVNILQIN-CKLFLYDSVK--------TWIE---LGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKI--WAEMVVQ 121 (145)
Q Consensus 56 EE~E~~vf~~r-aKLy~f~~~~--------~Wke---rG~G~lkl~~~~~~~~RivmR~d~~~rvllN~~i--~~~m~~~ 121 (145)
++-|.+||..+ |-+|+.-+-+ .|.. -=.|-|||....+ ..-|.+-...++.|-.++++ +++..++
T Consensus 5 ~~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g~-~~~I~LeD~~tGeLFA~cPv~~~~~~~VE 83 (133)
T 1tqz_A 5 LEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGK-IAYIKLEDKVSGELFAQAPVEQYPGIAVE 83 (133)
T ss_dssp CCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCSS-SEEEEEECSSCCSSCEEEEECSSCCCCEE
T ss_pred cceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeCC-EEEEEEEeCCCCcEEEeCcccCCCCcceE
Confidence 44566777775 7777774421 4653 4578899977554 56666777778899999999 6777788
Q ss_pred cC--CCCeEEEEEEcCC
Q psy8312 122 KP--SDNSVRLTAIENG 136 (145)
Q Consensus 122 ~~--~~k~v~~~a~~~~ 136 (145)
+. +.++..+-..+++
T Consensus 84 ~v~DSSRYFVlRv~d~~ 100 (133)
T 1tqz_A 84 TVTDSSRYFVIRIQDGT 100 (133)
T ss_dssp ECTTCCSCEEEEEEETT
T ss_pred EeecCcCeEEEEEECCC
Confidence 76 4677777666433
Done!