RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8312
         (145 letters)



>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 137

 Score = 84.2 bits (208), Expect = 2e-22
 Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 8/112 (7%)

Query: 42  ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDS-VKTWIELGRGQLRLN-----DINNSL 95
           A K   E V V+TGEE E N+LQ+ CKLF++D   ++W+E GRG LRLN     D     
Sbjct: 2   ARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQ 61

Query: 96  SRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV 145
           SR+V+R  GSLR+ILNTK+WA+M + K S+ S+ +TA+  E+   KV+L+  
Sbjct: 62  SRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISA 113


>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 70.6 bits (173), Expect = 4e-17
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 48  EAVAVVTGEEEEVNILQINCKLFLYDSV-KTWIELGRGQLRLN-DINNSLSRIVIRVVGS 105
           + + V TGEE+E        KLF +D   K W E G G +++     +   R+++R    
Sbjct: 10  DKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQV 69

Query: 106 LRVILNTKIWAEMVVQ--KPSDNSVRLTAI----ENGQAKVYLVKV 145
           L++  N  I  +M +     SD S    A+    E  + +   ++ 
Sbjct: 70  LKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRF 115


>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 146

 Score = 66.5 bits (162), Expect = 2e-15
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 50  VAVVTGEEEEVNILQINCKLFLYDSVK---TWIELGRGQLRLN-DINNSLSRIVIRVVGS 105
             + T EE+E  + ++  KLF + S      W E G G ++L         R+++R   +
Sbjct: 15  QEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKT 74

Query: 106 LRVILNTKIWAEMVVQKPSDNSVRLT-------AIENGQAKVYLVKV 145
           L++  N  I   M ++  + +            A E  + ++  ++ 
Sbjct: 75  LKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRF 121


>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 118

 Score = 56.5 bits (136), Expect = 7e-12
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 59  EVNILQINCKLFLYDSV-KTWIELGRGQLRLNDIN-NSLSRIVIRVVGSLRVILNTKIWA 116
           E  +     KLF +D+    W E G G L++     N   R+++R    L+V  N  I  
Sbjct: 1   EKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT 60

Query: 117 EMVV--QKPSDNSVRLTAI----ENGQAKVYLVKV 145
            M +     SD +    A      + + +    K 
Sbjct: 61  TMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKF 95


>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 114

 Score = 31.3 bits (71), Expect = 0.016
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 67  CKLFLYDSVKTWIELGRGQLRLNDINNSLS-RIVIRVVGSLRVILNTKIWAEMVVQKPSD 125
            +L+  D    W +   G   L   N   S  + I  +   +++   +++   V   P  
Sbjct: 18  VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRG 77


>d1h8ua_ d.169.1.1 (A:) Eosinophil major basic protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 26.1 bits (56), Expect = 1.1
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 29 LSEAAREYEEAARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGR 83
          L  + + + +A   C+R Y    V          +Q +        V  WI    
Sbjct: 4  LVRSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQV--WIGGRI 56


>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 63

 Score = 23.5 bits (51), Expect = 4.3
 Identities = 5/14 (35%), Positives = 8/14 (57%)

Query: 31 EAAREYEEAARACK 44
          +AA  Y+ AA   +
Sbjct: 38 DAALAYDRAAFRMR 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 518,704
Number of extensions: 22397
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 9
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.9 bits)