Query psy8315
Match_columns 107
No_of_seqs 2 out of 4
Neff 1.3
Searched_HMMs 46136
Date Sat Aug 17 00:36:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12238 MSA-2c: Merozoite sur 60.4 31 0.00067 27.1 5.7 20 21-40 137-156 (205)
2 PF08698 Fcf2: Fcf2 pre-rRNA p 35.4 15 0.00033 25.4 0.4 17 3-21 27-43 (99)
3 PRK13042 superantigen-like pro 25.9 1.5E+02 0.0033 24.8 4.7 12 54-65 68-79 (291)
4 PF15402 Spc7_N: N-terminus of 22.2 4.7E+02 0.01 24.9 7.6 13 93-105 752-764 (927)
5 PF08990 Docking: Erythronolid 15.3 71 0.0015 18.0 0.5 9 7-15 6-14 (27)
6 PRK13042 superantigen-like pro 14.4 3.7E+02 0.0079 22.6 4.6 6 64-69 84-89 (291)
7 COG0179 MhpD 2-keto-4-pentenoa 13.4 95 0.0021 24.5 1.0 15 1-15 208-222 (266)
8 PF12976 DUF3860: Domain of Un 12.0 1E+02 0.0022 22.2 0.7 14 7-20 9-22 (92)
9 PF04045 P34-Arc: Arp2/3 compl 10.1 1.2E+02 0.0027 23.9 0.7 12 2-13 197-208 (241)
10 PF10310 DUF2413: Protein of u 9.7 1.1E+03 0.025 20.2 6.9 89 8-96 34-128 (444)
No 1
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=60.43 E-value=31 Score=27.09 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=10.0
Q ss_pred cCCCCCCCCcccCCCcCCCC
Q psy8315 21 KTPRETPDKTLKTPRETPDK 40 (107)
Q Consensus 21 ~TPrqTP~KT~~TP~~TP~K 40 (107)
.+|.+.+......||+++.-
T Consensus 137 k~p~~~ss~~~sS~q~~~~~ 156 (205)
T PF12238_consen 137 KKPAQPSSPTPSSPQGTSTT 156 (205)
T ss_pred hcccCCCCCCCCCCCCCCCC
Confidence 34555554444555555444
No 2
>PF08698 Fcf2: Fcf2 pre-rRNA processing; InterPro: IPR014810 This domain is found in eukaryotic nucleolar proteins that are involved in pre-rRNA processing [].
Probab=35.43 E-value=15 Score=25.36 Aligned_cols=17 Identities=59% Similarity=0.825 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhccCccccc
Q psy8315 3 WRILKLRNYLSQIPKRTLK 21 (107)
Q Consensus 3 wrilklrnyls~~P~rsi~ 21 (107)
|.||+|||||. |++-.+
T Consensus 27 l~~LklR~~lD--PkrfyK 43 (99)
T PF08698_consen 27 LQLLKLRNALD--PKRFYK 43 (99)
T ss_pred HHHHHhhcccC--chhhhh
Confidence 78999999985 455443
No 3
>PRK13042 superantigen-like protein; Reviewed
Probab=25.91 E-value=1.5e+02 Score=24.78 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=6.1
Q ss_pred cCCCcCCCCCCC
Q psy8315 54 KTPRETPDKSLK 65 (107)
Q Consensus 54 ~TP~qTP~KS~~ 65 (107)
.|||.+|.--+|
T Consensus 68 ~t~qptp~~~tp 79 (291)
T PRK13042 68 EAPQQTPNATTP 79 (291)
T ss_pred cCCCCCCCCCCC
Confidence 555555444444
No 4
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=22.23 E-value=4.7e+02 Score=24.90 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=7.9
Q ss_pred cccCccCCcccCC
Q psy8315 93 VSNGVKTPKVSKK 105 (107)
Q Consensus 93 vsngvktpkvskk 105 (107)
...|..||.|--.
T Consensus 752 ~~tG~~TP~~vLt 764 (927)
T PF15402_consen 752 PSTGQSTPTFVLT 764 (927)
T ss_pred ccccCCCCceeec
Confidence 3467777766443
No 5
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=15.26 E-value=71 Score=18.00 Aligned_cols=9 Identities=56% Similarity=1.132 Sum_probs=7.1
Q ss_pred hhhhhhhcc
Q psy8315 7 KLRNYLSQI 15 (107)
Q Consensus 7 klrnyls~~ 15 (107)
|||.||.+.
T Consensus 6 kLr~YLkr~ 14 (27)
T PF08990_consen 6 KLRDYLKRV 14 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 789999763
No 6
>PRK13042 superantigen-like protein; Reviewed
Probab=14.36 E-value=3.7e+02 Score=22.55 Aligned_cols=6 Identities=33% Similarity=0.822 Sum_probs=2.3
Q ss_pred CCCCCC
Q psy8315 64 LKTPRE 69 (107)
Q Consensus 64 ~~~P~q 69 (107)
..+||.
T Consensus 84 ~~~pq~ 89 (291)
T PRK13042 84 VETPQS 89 (291)
T ss_pred cCCCCC
Confidence 333443
No 7
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=13.41 E-value=95 Score=24.50 Aligned_cols=15 Identities=47% Similarity=0.720 Sum_probs=14.2
Q ss_pred Cchhhhhhhhhhhcc
Q psy8315 1 MIWRILKLRNYLSQI 15 (107)
Q Consensus 1 miwrilklrnyls~~ 15 (107)
|||.|-.|-.|||+.
T Consensus 208 Mi~~i~~lI~~lS~~ 222 (266)
T COG0179 208 MIFSIPELIAYLSRF 222 (266)
T ss_pred cccCHHHHHHHHhCC
Confidence 999999999999986
No 8
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=12.05 E-value=1e+02 Score=22.20 Aligned_cols=14 Identities=50% Similarity=0.914 Sum_probs=11.2
Q ss_pred hhhhhhhccCcccc
Q psy8315 7 KLRNYLSQIPKRTL 20 (107)
Q Consensus 7 klrnyls~~P~rsi 20 (107)
++||||+.-|+.++
T Consensus 9 ~Ir~~L~ER~~NT~ 22 (92)
T PF12976_consen 9 LIRNYLSERPRNTI 22 (92)
T ss_pred HHHHHHhcCcccHH
Confidence 57899998887765
No 9
>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....
Probab=10.10 E-value=1.2e+02 Score=23.88 Aligned_cols=12 Identities=50% Similarity=1.171 Sum_probs=11.0
Q ss_pred chhhhhhhhhhh
Q psy8315 2 IWRILKLRNYLS 13 (107)
Q Consensus 2 iwrilklrnyls 13 (107)
||.|.-+||||.
T Consensus 197 i~~l~~FR~Ylh 208 (241)
T PF04045_consen 197 IWHLQTFRNYLH 208 (241)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999985
No 10
>PF10310 DUF2413: Protein of unknown function (DUF2413); InterPro: IPR018814 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=9.67 E-value=1.1e+03 Score=20.16 Aligned_cols=89 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhhhhhccCcccccCCCCCCCC--cccCCCcCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCccccCCCcCCCc-
Q psy8315 8 LRNYLSQIPKRTLKTPRETPDK--TLKTPRETPDKTLNTPRETPDKTLKTPRETPDKSLKTPRETPDKTLKTPRETPDK- 84 (107)
Q Consensus 8 lrnyls~~P~rsi~TPrqTP~K--T~~TP~~TP~Ks~~~P~qTP~KT~~TP~qTP~KS~~~P~qTP~KT~~TP~qT~~~- 84 (107)
+-.||..+-+.....+..++-. ..-||+-...+....|......+.......|.|+....+...++..+........
T Consensus 34 iL~fLdeL~~~~~~~~~~~~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 113 (444)
T PF10310_consen 34 ILAFLDELEQSEKSKPPKKPREASRPHTPRVKEPKKSSKPTEPSAATKPEESAKPRKSEESTRSSHTKSATPSETSSEEA 113 (444)
T ss_pred HHHHHHHHhhccccCCCCCcccccCCCCcccccccccCCCCCCCCCCccccccccccccccccCCCcCCCCCCCCCccCC
Q ss_pred ---cccccccccccC
Q psy8315 85 ---ISVKSNSEVSNG 96 (107)
Q Consensus 85 ---I~~ksnsevsng 96 (107)
.....-...+||
T Consensus 114 ~~~~~~~p~~s~ggw 128 (444)
T PF10310_consen 114 EPEEEPDPIASSGGW 128 (444)
T ss_pred CCCCCCCcccccCCc
Done!