Query psy8315
Match_columns 107
No_of_seqs 2 out of 4
Neff 1.3
Searched_HMMs 29240
Date Sat Aug 17 00:36:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x59_A Histidyl-tRNA synthetas 20.9 65 0.0022 19.7 2.3 24 5-28 45-71 (73)
2 3l53_A Putative fumarylacetoac 6.8 1.4E+02 0.0048 21.2 0.8 15 1-15 165-179 (224)
3 1k8k_D P34, ARP2/3 complex 34 6.4 1.4E+02 0.0049 23.3 0.7 12 2-13 241-252 (300)
4 2od5_A Hypothetical protein; m 6.1 1.4E+02 0.0046 21.3 0.4 14 7-20 19-32 (116)
5 3dwl_D Actin-related protein 2 6.0 1.5E+02 0.0053 23.5 0.7 12 2-13 259-270 (317)
6 2q18_X 2-keto-3-deoxy-D-arabin 6.0 1.6E+02 0.0054 21.6 0.7 14 1-14 229-242 (293)
7 4dbf_A 2-hydroxyhepta-2,4-dien 5.6 1.7E+02 0.0058 22.1 0.7 14 1-14 231-244 (288)
8 3s52_A Putative fumarylacetoac 5.5 1.6E+02 0.0056 20.7 0.5 15 1-15 167-181 (221)
9 3rr6_A Putative uncharacterize 5.5 1.6E+02 0.0056 21.8 0.5 14 1-14 206-219 (265)
10 2dfu_A Probable 2-hydroxyhepta 5.0 2E+02 0.0067 21.0 0.7 14 1-14 202-215 (264)
No 1
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.89 E-value=65 Score=19.73 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=13.2
Q ss_pred hhhhhhhhh---ccCcccccCCCCCCC
Q psy8315 5 ILKLRNYLS---QIPKRTLKTPRETPD 28 (107)
Q Consensus 5 ilklrnyls---~~P~rsi~TPrqTP~ 28 (107)
++.+.+-|. .-.+-.|+|||-|.|
T Consensus 45 l~~~ka~l~~~~~k~kf~LKTPKGT~~ 71 (73)
T 1x59_A 45 LLKLKAQLGPDESKQKFVLKTPKSGPS 71 (73)
T ss_dssp HHHHHHHHCCCCCSCCCCCCSTTCCCC
T ss_pred HHHHhhhcCccccccceeeeCCCCCCC
Confidence 444554442 224556777777765
No 2
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=6.82 E-value=1.4e+02 Score=21.21 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.4
Q ss_pred Cchhhhhhhhhhhcc
Q psy8315 1 MIWRILKLRNYLSQI 15 (107)
Q Consensus 1 miwrilklrnyls~~ 15 (107)
|||.+..|-.|||+.
T Consensus 165 mi~~~~~lia~lS~~ 179 (224)
T 3l53_A 165 MLFPILPLIAHMSEH 179 (224)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHCC
Confidence 899999999999973
No 3
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=6.44 E-value=1.4e+02 Score=23.31 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=10.5
Q ss_pred chhhhhhhhhhh
Q psy8315 2 IWRILKLRNYLS 13 (107)
Q Consensus 2 iwrilklrnyls 13 (107)
||.|.-.||||.
T Consensus 241 i~~i~~FR~Ylh 252 (300)
T 1k8k_D 241 INLIHTFRDYLH 252 (300)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999985
No 4
>2od5_A Hypothetical protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; HET: 1PE; 1.79A {Uncultured marine organism} SCOP: a.4.5.70
Probab=6.11 E-value=1.4e+02 Score=21.25 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.6
Q ss_pred hhhhhhhccCcccc
Q psy8315 7 KLRNYLSQIPKRTL 20 (107)
Q Consensus 7 klrnyls~~P~rsi 20 (107)
|+||||+.-|+.++
T Consensus 19 kIkkfL~eRprNT~ 32 (116)
T 2od5_A 19 KIKKFLGDRPRNTA 32 (116)
T ss_dssp HHHHHTSSSCEEHH
T ss_pred HHHHHHhcCCCcHH
Confidence 67899998886543
No 5
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=6.03 E-value=1.5e+02 Score=23.47 Aligned_cols=12 Identities=42% Similarity=0.401 Sum_probs=10.6
Q ss_pred chhhhhhhhhhh
Q psy8315 2 IWRILKLRNYLS 13 (107)
Q Consensus 2 iwrilklrnyls 13 (107)
||.|.-+||||.
T Consensus 259 i~~i~~FR~Ylh 270 (317)
T 3dwl_D 259 ISHIQVFRNTLH 270 (317)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 799999999984
No 6
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=6.02 E-value=1.6e+02 Score=21.55 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=13.1
Q ss_pred Cchhhhhhhhhhhc
Q psy8315 1 MIWRILKLRNYLSQ 14 (107)
Q Consensus 1 miwrilklrnyls~ 14 (107)
|||.+..|-+|||+
T Consensus 229 mi~~~~~li~~ls~ 242 (293)
T 2q18_X 229 MRRKIEEQIQYLIR 242 (293)
T ss_dssp BCSCHHHHHHHHHT
T ss_pred hccCHHHHHHHHHc
Confidence 89999999999998
No 7
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=5.65 E-value=1.7e+02 Score=22.09 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=13.0
Q ss_pred Cchhhhhhhhhhhc
Q psy8315 1 MIWRILKLRNYLSQ 14 (107)
Q Consensus 1 miwrilklrnyls~ 14 (107)
|||.+..|-.|||+
T Consensus 231 mi~~~~~lIa~lS~ 244 (288)
T 4dbf_A 231 MIMKMGEIIEFITA 244 (288)
T ss_dssp BSSCHHHHHHHHHT
T ss_pred hcCCHHHHHHHHhC
Confidence 89999999999997
No 8
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=5.55 E-value=1.6e+02 Score=20.69 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=13.3
Q ss_pred Cchhhhhhhhhhhcc
Q psy8315 1 MIWRILKLRNYLSQI 15 (107)
Q Consensus 1 miwrilklrnyls~~ 15 (107)
|||.+..|-.|||+.
T Consensus 167 mi~~~~~lia~lS~~ 181 (221)
T 3s52_A 167 MITPIIPLISYMSRF 181 (221)
T ss_dssp BSSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhCC
Confidence 899999999999974
No 9
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=5.53 E-value=1.6e+02 Score=21.78 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=12.9
Q ss_pred Cchhhhhhhhhhhc
Q psy8315 1 MIWRILKLRNYLSQ 14 (107)
Q Consensus 1 miwrilklrnyls~ 14 (107)
|||.+..|-.|||+
T Consensus 206 mi~~~~~lIa~lS~ 219 (265)
T 3rr6_A 206 LLHDVGAIVEWVSA 219 (265)
T ss_dssp BSSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHhc
Confidence 89999999999997
No 10
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=5.04 E-value=2e+02 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=12.8
Q ss_pred Cchhhhhhhhhhhc
Q psy8315 1 MIWRILKLRNYLSQ 14 (107)
Q Consensus 1 miwrilklrnyls~ 14 (107)
|||.+..|-.|||+
T Consensus 202 mi~~~~~lia~ls~ 215 (264)
T 2dfu_A 202 MIFSVAEILSYIST 215 (264)
T ss_dssp BSSCHHHHHHHHHT
T ss_pred hhcCHHHHHHHHhc
Confidence 79999999999996
Done!