RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8315
         (107 letters)



>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
          C2 domain fold, ACU blood coagulation, disease
          mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo
          sapiens} PDB: 3cdz_B*
          Length = 770

 Score = 25.5 bits (55), Expect = 4.2
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 10 NYLSQIPKRTLKTPRETPDKTLKTPRETPDKTLNTPRETPDKTLKTPRETPDK 62
          +Y +QIPK   K+  ++P+KT    ++T   +LN      +  +    E  +K
Sbjct: 8  HYGTQIPKEEWKSQEKSPEKTAFKKKDTI-LSLNACES--NHAIAAINEGQNK 57


>2w16_A FPVA, ferripyoverdine receptor; FPVA, iron, membrane, TONB BOX,
           transport, siderop cell membrane; HET: N8E PVE FHO;
           2.71A {Pseudomonas aeruginosa} PDB: 2o5p_A* 2iah_A*
           2w6t_A* 2w6u_A* 2w75_A* 2w76_A* 2w77_A* 2w78_A* 1xkh_A*
          Length = 772

 Score = 25.0 bits (55), Expect = 6.3
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 24  RETPDKTLKTPRETPDKTLNTPRETPDKTLKTPRETPDKSLKTPR-ETPDKTLKTPRETP 82
               +    +  E  D +++                   S       T  + + TPRETP
Sbjct: 64  DFQGNAITISVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETP 123

Query: 83  DKISV 87
             I+V
Sbjct: 124 QSITV 128


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.305    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,344,673
Number of extensions: 61086
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 4
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.6 bits)