RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8315
         (107 letters)



>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
           (MPP) beta chain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 222

 Score = 24.3 bits (51), Expect = 4.3
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 8   LRNYLSQIPKRTLKTPRETP 27
            + Y   +PK     P  +P
Sbjct: 202 AQKYFGHVPKSESPVPLGSP 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,572
Number of extensions: 12669
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 3
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.0 bits)