Query psy8318
Match_columns 313
No_of_seqs 218 out of 2154
Neff 8.9
Searched_HMMs 46136
Date Sat Aug 17 00:39:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082|consensus 100.0 3.9E-78 8.4E-83 539.3 25.9 304 5-308 28-354 (354)
2 KOG0085|consensus 100.0 2.1E-74 4.5E-79 477.8 11.6 302 6-308 35-359 (359)
3 smart00275 G_alpha G protein a 100.0 1.2E-70 2.6E-75 502.1 26.9 302 5-306 16-342 (342)
4 cd00066 G-alpha G protein alph 100.0 1.8E-70 3.9E-75 497.5 26.7 293 11-303 1-316 (317)
5 KOG0099|consensus 100.0 2.8E-68 6.1E-73 447.9 16.4 301 7-308 37-379 (379)
6 PF00503 G-alpha: G-protein al 100.0 1.8E-66 3.8E-71 485.5 24.8 293 5-297 53-389 (389)
7 KOG0070|consensus 100.0 3.2E-32 6.9E-37 220.1 10.6 134 156-300 46-180 (181)
8 KOG0071|consensus 100.0 1.5E-31 3.3E-36 205.1 10.3 132 155-297 45-177 (180)
9 KOG0073|consensus 100.0 2.8E-30 6E-35 203.5 13.2 134 155-299 44-179 (185)
10 PF00025 Arf: ADP-ribosylation 100.0 2.3E-29 5.1E-34 210.1 17.5 132 155-297 42-175 (175)
11 KOG0084|consensus 100.0 1.9E-29 4.1E-34 205.3 12.3 133 155-301 38-175 (205)
12 PLN00223 ADP-ribosylation fact 100.0 2.3E-28 5.1E-33 205.2 13.9 133 156-300 46-180 (181)
13 smart00177 ARF ARF-like small 99.9 4.3E-27 9.2E-32 196.5 14.2 131 156-297 42-173 (175)
14 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3.8E-27 8.3E-32 193.7 13.1 128 156-295 29-158 (159)
15 cd04149 Arf6 Arf6 subfamily. 99.9 8.2E-27 1.8E-31 193.5 13.4 128 156-295 38-167 (168)
16 PTZ00133 ADP-ribosylation fact 99.9 1.2E-26 2.7E-31 194.9 14.4 133 156-300 46-180 (182)
17 KOG0092|consensus 99.9 6.7E-27 1.4E-31 189.8 11.5 134 156-303 35-172 (200)
18 cd04158 ARD1 ARD1 subfamily. 99.9 5.1E-26 1.1E-30 188.9 14.7 134 156-300 28-163 (169)
19 cd04120 Rab12 Rab12 subfamily. 99.9 3.6E-26 7.8E-31 194.8 13.5 127 161-300 37-165 (202)
20 KOG0078|consensus 99.9 2.2E-26 4.7E-31 190.1 11.3 132 155-300 41-176 (207)
21 KOG0075|consensus 99.9 1E-26 2.2E-31 180.0 8.6 132 156-298 50-182 (186)
22 cd04121 Rab40 Rab40 subfamily. 99.9 6E-26 1.3E-30 191.6 13.3 121 164-300 46-169 (189)
23 KOG0076|consensus 99.9 8.8E-27 1.9E-31 185.5 6.6 134 156-300 54-189 (197)
24 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.9E-25 4.2E-30 185.1 14.5 129 156-295 28-166 (167)
25 KOG0094|consensus 99.9 6.1E-26 1.3E-30 184.2 10.9 134 155-301 51-188 (221)
26 KOG0074|consensus 99.9 2.9E-26 6.3E-31 176.4 8.2 130 156-297 46-178 (185)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 4.3E-25 9.4E-30 183.9 12.9 118 170-300 49-166 (172)
28 cd01875 RhoG RhoG subfamily. 99.9 3.6E-25 7.8E-30 187.5 11.8 120 169-300 49-179 (191)
29 cd04133 Rop_like Rop subfamily 99.9 6.7E-25 1.4E-29 183.2 12.6 133 142-298 28-173 (176)
30 KOG0394|consensus 99.9 5.7E-25 1.2E-29 176.8 11.2 135 156-302 39-182 (210)
31 smart00178 SAR Sar1p-like memb 99.9 1.2E-24 2.5E-29 183.3 13.3 129 157-296 47-183 (184)
32 cd04157 Arl6 Arl6 subfamily. 99.9 1.1E-24 2.4E-29 178.8 12.8 128 156-295 30-161 (162)
33 cd04154 Arl2 Arl2 subfamily. 99.9 1.2E-24 2.6E-29 181.2 13.0 129 156-295 43-172 (173)
34 PLN03071 GTP-binding nuclear p 99.9 1.4E-24 3E-29 187.7 12.9 115 169-300 60-174 (219)
35 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.1E-24 4.5E-29 184.2 13.7 118 170-300 49-170 (201)
36 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.4E-24 5.2E-29 179.7 13.2 127 157-295 45-173 (174)
37 cd04127 Rab27A Rab27a subfamil 99.9 2.6E-24 5.7E-29 180.0 13.0 116 171-300 63-179 (180)
38 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.2E-24 7E-29 177.1 13.2 129 156-295 35-166 (167)
39 cd04175 Rap1 Rap1 subgroup. T 99.9 1.9E-24 4E-29 178.2 11.7 115 170-297 48-162 (164)
40 cd04136 Rap_like Rap-like subf 99.9 1.9E-24 4.1E-29 177.6 11.7 115 170-297 48-162 (163)
41 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.8E-24 1E-28 179.3 14.4 121 169-300 50-172 (183)
42 cd00879 Sar1 Sar1 subfamily. 99.9 3.2E-24 7E-29 181.2 13.2 129 157-296 49-189 (190)
43 KOG0086|consensus 99.9 2E-24 4.4E-29 168.3 10.9 131 156-300 39-173 (214)
44 KOG0072|consensus 99.9 1.5E-25 3.2E-30 173.0 4.5 134 155-300 46-181 (182)
45 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 3.4E-24 7.4E-29 177.0 12.7 126 156-294 29-162 (164)
46 cd04151 Arl1 Arl1 subfamily. 99.9 4.6E-24 1E-28 174.9 12.8 127 157-295 29-157 (158)
47 cd04122 Rab14 Rab14 subfamily. 99.9 5.3E-24 1.2E-28 176.0 12.8 115 170-299 50-165 (166)
48 cd01874 Cdc42 Cdc42 subfamily. 99.9 5.2E-24 1.1E-28 177.9 12.5 114 171-296 49-173 (175)
49 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 6.2E-24 1.4E-28 178.3 12.7 114 169-298 51-180 (182)
50 cd00877 Ran Ran (Ras-related n 99.9 1E-23 2.2E-28 174.5 13.7 114 169-299 47-160 (166)
51 cd04126 Rab20 Rab20 subfamily. 99.9 1.1E-23 2.4E-28 181.6 14.0 135 157-302 30-194 (220)
52 KOG0087|consensus 99.9 7.4E-24 1.6E-28 174.4 12.0 133 156-302 44-180 (222)
53 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.2E-23 2.6E-28 172.5 13.2 128 157-295 29-159 (160)
54 cd04176 Rap2 Rap2 subgroup. T 99.9 7.1E-24 1.5E-28 174.5 11.7 114 171-297 49-162 (163)
55 cd04128 Spg1 Spg1p. Spg1p (se 99.9 9.5E-24 2.1E-28 177.4 12.6 124 165-300 41-168 (182)
56 PTZ00369 Ras-like protein; Pro 99.9 9E-24 1.9E-28 178.6 12.4 119 169-300 51-169 (189)
57 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.2E-23 2.5E-28 182.5 13.1 118 169-302 59-192 (232)
58 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.1E-23 2.5E-28 172.4 12.1 113 171-297 49-161 (162)
59 cd01871 Rac1_like Rac1-like su 99.9 1.1E-23 2.5E-28 175.6 11.6 113 169-296 47-173 (174)
60 cd04117 Rab15 Rab15 subfamily. 99.9 1.8E-23 4E-28 172.1 12.7 118 165-296 41-160 (161)
61 KOG0079|consensus 99.9 6.8E-24 1.5E-28 164.5 9.0 133 155-302 37-173 (198)
62 KOG0098|consensus 99.9 9.3E-24 2E-28 170.2 10.0 131 157-301 37-171 (216)
63 cd04144 Ras2 Ras2 subfamily. 99.9 1.4E-23 3.1E-28 177.5 11.8 120 170-302 46-167 (190)
64 KOG0080|consensus 99.9 9.3E-24 2E-28 166.0 9.8 130 157-299 42-175 (209)
65 cd01865 Rab3 Rab3 subfamily. 99.9 2.4E-23 5.2E-28 172.0 12.8 114 170-298 49-163 (165)
66 smart00173 RAS Ras subfamily o 99.9 2.9E-23 6.3E-28 170.9 12.4 116 170-298 47-162 (164)
67 cd04111 Rab39 Rab39 subfamily. 99.9 3.6E-23 7.8E-28 177.9 13.4 117 171-300 52-168 (211)
68 smart00176 RAN Ran (Ras-relate 99.9 2.1E-23 4.6E-28 177.5 11.8 115 169-300 42-156 (200)
69 cd04131 Rnd Rnd subfamily. Th 99.9 3.7E-23 8.1E-28 173.1 13.0 114 169-298 47-176 (178)
70 cd04109 Rab28 Rab28 subfamily. 99.9 3.1E-23 6.8E-28 178.8 12.9 118 170-300 49-168 (215)
71 KOG0093|consensus 99.9 1.6E-23 3.4E-28 162.3 9.2 137 155-305 50-190 (193)
72 cd04110 Rab35 Rab35 subfamily. 99.9 7.9E-23 1.7E-27 174.2 14.1 115 171-300 55-169 (199)
73 cd04134 Rho3 Rho3 subfamily. 99.9 4.3E-23 9.3E-28 174.4 12.2 119 170-300 47-176 (189)
74 KOG0095|consensus 99.9 1.7E-23 3.8E-28 162.5 8.8 132 156-301 37-172 (213)
75 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 6.7E-23 1.5E-27 169.2 12.8 115 170-299 50-165 (166)
76 cd04103 Centaurin_gamma Centau 99.9 5.2E-23 1.1E-27 169.0 12.0 115 165-296 39-157 (158)
77 cd04116 Rab9 Rab9 subfamily. 99.9 7.1E-23 1.5E-27 169.8 12.0 115 169-296 52-169 (170)
78 cd01867 Rab8_Rab10_Rab13_like 99.9 1E-22 2.2E-27 168.5 12.8 115 170-299 51-166 (167)
79 cd04119 RJL RJL (RabJ-Like) su 99.9 9.2E-23 2E-27 168.0 11.9 116 169-298 47-167 (168)
80 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 7.6E-23 1.6E-27 176.5 11.7 122 169-301 47-179 (222)
81 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.6E-22 3.5E-27 167.8 12.8 115 170-297 50-168 (170)
82 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.9E-22 4.2E-27 167.6 13.1 117 170-299 48-166 (170)
83 cd04155 Arl3 Arl3 subfamily. 99.9 1.8E-22 4E-27 167.7 12.8 128 156-295 43-172 (173)
84 cd04143 Rhes_like Rhes_like su 99.9 1.9E-22 4E-27 177.2 13.2 115 170-297 47-170 (247)
85 cd04140 ARHI_like ARHI subfami 99.9 1.5E-22 3.2E-27 167.2 11.7 113 169-295 47-162 (165)
86 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.4E-22 3.1E-27 166.6 11.5 115 170-297 49-163 (164)
87 cd04125 RabA_like RabA-like su 99.9 2.9E-22 6.2E-27 169.1 13.4 117 170-300 48-164 (188)
88 PLN03110 Rab GTPase; Provision 99.9 2.7E-22 5.8E-27 173.1 13.0 130 157-300 43-176 (216)
89 cd04112 Rab26 Rab26 subfamily. 99.9 3.8E-22 8.3E-27 168.9 13.5 119 170-303 49-168 (191)
90 cd00878 Arf_Arl Arf (ADP-ribos 99.9 4.9E-22 1.1E-26 162.7 13.7 129 156-295 28-157 (158)
91 cd01873 RhoBTB RhoBTB subfamil 99.9 2.9E-22 6.2E-27 170.1 12.2 111 169-296 64-194 (195)
92 cd04124 RabL2 RabL2 subfamily. 99.9 4.2E-22 9.1E-27 163.9 12.8 114 169-300 47-160 (161)
93 KOG0091|consensus 99.9 7.2E-23 1.6E-27 161.4 7.6 125 170-307 57-183 (213)
94 cd01868 Rab11_like Rab11-like. 99.9 3.6E-22 7.9E-27 164.6 12.2 113 171-297 52-164 (165)
95 cd01864 Rab19 Rab19 subfamily. 99.9 4.8E-22 1E-26 164.0 12.4 118 165-296 44-164 (165)
96 cd01866 Rab2 Rab2 subfamily. 99.9 5.4E-22 1.2E-26 164.4 12.7 115 170-299 52-167 (168)
97 cd01892 Miro2 Miro2 subfamily. 99.9 7.7E-22 1.7E-26 163.8 13.5 111 171-298 54-166 (169)
98 PF00071 Ras: Ras family; Int 99.9 4.3E-22 9.2E-27 163.6 11.7 115 169-298 46-161 (162)
99 cd04177 RSR1 RSR1 subgroup. R 99.9 5.9E-22 1.3E-26 164.1 12.2 117 170-299 48-165 (168)
100 cd04159 Arl10_like Arl10-like 99.9 9.9E-22 2.1E-26 159.8 13.2 128 156-295 29-158 (159)
101 cd04113 Rab4 Rab4 subfamily. 99.9 5.9E-22 1.3E-26 162.7 11.5 113 170-297 48-161 (161)
102 cd04132 Rho4_like Rho4-like su 99.9 8.6E-22 1.9E-26 165.9 12.7 116 170-301 48-170 (187)
103 PLN03108 Rab family protein; P 99.9 1.3E-21 2.8E-26 168.1 13.1 117 170-300 54-170 (210)
104 cd01860 Rab5_related Rab5-rela 99.9 9.6E-22 2.1E-26 161.5 11.7 114 169-297 48-162 (163)
105 cd04106 Rab23_lke Rab23-like s 99.9 1E-21 2.3E-26 161.2 11.7 111 170-296 50-161 (162)
106 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.1E-21 2.5E-26 161.4 11.8 113 170-297 51-163 (164)
107 KOG0081|consensus 99.9 3.5E-23 7.5E-28 162.5 2.3 118 171-301 67-184 (219)
108 cd04118 Rab24 Rab24 subfamily. 99.9 2.8E-21 6E-26 163.7 14.0 116 171-302 50-170 (193)
109 smart00175 RAB Rab subfamily o 99.9 2.5E-21 5.5E-26 159.0 12.8 115 171-299 49-163 (164)
110 cd01861 Rab6 Rab6 subfamily. 99.9 2E-21 4.4E-26 159.3 12.2 112 171-296 49-160 (161)
111 cd01862 Rab7 Rab7 subfamily. 99.9 3.1E-21 6.8E-26 159.8 13.0 118 170-300 48-169 (172)
112 smart00174 RHO Rho (Ras homolo 99.9 2.1E-21 4.6E-26 161.4 11.6 114 170-298 45-172 (174)
113 cd04135 Tc10 TC10 subfamily. 99.9 3.9E-21 8.5E-26 159.8 12.9 117 170-297 47-173 (174)
114 cd04123 Rab21 Rab21 subfamily. 99.9 3.6E-21 7.7E-26 157.6 12.2 113 170-297 48-161 (162)
115 cd01863 Rab18 Rab18 subfamily. 99.9 4.6E-21 1E-25 157.3 12.5 113 170-296 48-160 (161)
116 cd04139 RalA_RalB RalA/RalB su 99.9 4.2E-21 9.2E-26 157.6 12.2 117 169-299 46-163 (164)
117 PLN03118 Rab family protein; P 99.9 5.6E-21 1.2E-25 164.3 13.2 117 170-300 61-179 (211)
118 cd04130 Wrch_1 Wrch-1 subfamil 99.9 5.1E-21 1.1E-25 159.3 12.5 110 170-294 47-170 (173)
119 cd04142 RRP22 RRP22 subfamily. 99.9 8.4E-21 1.8E-25 161.5 13.5 117 171-300 49-176 (198)
120 cd04146 RERG_RasL11_like RERG/ 99.9 5.7E-21 1.2E-25 157.6 11.5 116 169-298 45-164 (165)
121 cd04114 Rab30 Rab30 subfamily. 99.9 7.7E-21 1.7E-25 157.2 12.2 119 165-297 48-168 (169)
122 cd04147 Ras_dva Ras-dva subfam 99.8 9.7E-21 2.1E-25 161.2 12.7 115 171-298 47-163 (198)
123 PTZ00132 GTP-binding nuclear p 99.8 1.8E-20 3.9E-25 161.6 13.5 115 169-300 56-170 (215)
124 cd04148 RGK RGK subfamily. Th 99.8 1.6E-20 3.4E-25 162.6 13.1 116 169-299 48-164 (221)
125 KOG0395|consensus 99.8 7.1E-21 1.5E-25 161.0 9.6 137 142-299 30-166 (196)
126 cd01870 RhoA_like RhoA-like su 99.8 2.8E-20 6.1E-25 154.8 12.0 117 169-297 47-174 (175)
127 cd04137 RheB Rheb (Ras Homolog 99.8 3.7E-20 7.9E-25 154.9 11.7 117 171-301 49-166 (180)
128 KOG0088|consensus 99.8 6.4E-21 1.4E-25 149.7 6.5 119 169-301 60-178 (218)
129 cd01893 Miro1 Miro1 subfamily. 99.8 7.2E-20 1.6E-24 151.3 11.9 117 169-298 45-164 (166)
130 cd00154 Rab Rab family. Rab G 99.8 5.4E-20 1.2E-24 149.4 11.0 111 169-294 47-158 (159)
131 cd00157 Rho Rho (Ras homology) 99.8 8.9E-20 1.9E-24 150.9 12.3 113 169-295 46-170 (171)
132 PTZ00099 rab6; Provisional 99.8 6.2E-20 1.3E-24 153.2 10.3 116 169-299 27-143 (176)
133 KOG0097|consensus 99.8 6.6E-20 1.4E-24 141.4 9.1 130 157-300 42-175 (215)
134 cd00876 Ras Ras family. The R 99.8 1.4E-19 3E-24 147.8 10.6 114 170-297 46-160 (160)
135 cd04129 Rho2 Rho2 subfamily. 99.8 2.4E-19 5.2E-24 151.2 11.7 118 171-303 49-178 (187)
136 cd04102 RabL3 RabL3 (Rab-like3 99.8 4.6E-19 1E-23 150.9 11.1 75 170-254 53-145 (202)
137 KOG0077|consensus 99.8 6.7E-20 1.5E-24 145.2 3.0 131 156-297 49-192 (193)
138 PLN00023 GTP-binding protein; 99.8 1.5E-18 3.3E-23 155.2 11.9 74 170-253 82-166 (334)
139 COG1100 GTPase SAR1 and relate 99.8 3.7E-18 8.1E-23 147.2 12.7 121 170-300 53-187 (219)
140 KOG0083|consensus 99.8 3E-19 6.4E-24 136.5 3.7 133 156-302 28-164 (192)
141 cd01897 NOG NOG1 is a nucleola 99.8 9.2E-18 2E-22 138.6 12.3 124 158-297 34-167 (168)
142 cd04171 SelB SelB subfamily. 99.8 6.6E-18 1.4E-22 138.5 10.9 121 160-295 39-163 (164)
143 KOG4252|consensus 99.8 2.5E-19 5.5E-24 143.5 2.4 124 169-307 67-190 (246)
144 TIGR00231 small_GTP small GTP- 99.7 1.2E-17 2.6E-22 135.1 11.6 115 166-294 43-160 (161)
145 cd01890 LepA LepA subfamily. 99.7 1.2E-17 2.7E-22 139.3 10.4 110 169-297 65-176 (179)
146 cd01898 Obg Obg subfamily. Th 99.7 1.9E-17 4.2E-22 136.8 10.3 117 167-296 43-169 (170)
147 PRK04213 GTP-binding protein; 99.7 5.9E-17 1.3E-21 138.0 11.2 121 172-298 53-192 (201)
148 KOG0096|consensus 99.7 5.6E-17 1.2E-21 131.5 9.7 129 155-300 39-171 (216)
149 cd01878 HflX HflX subfamily. 99.7 1.6E-16 3.5E-21 135.7 12.5 112 165-296 82-203 (204)
150 KOG0393|consensus 99.7 2.7E-17 5.9E-22 136.7 7.1 136 142-300 31-181 (198)
151 cd04105 SR_beta Signal recogni 99.7 9.2E-17 2E-21 137.2 9.9 118 169-295 46-202 (203)
152 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 2.3E-16 4.9E-21 130.0 11.1 114 169-297 48-165 (168)
153 cd01891 TypA_BipA TypA (tyrosi 99.7 2.9E-16 6.3E-21 133.2 11.5 121 163-298 57-188 (194)
154 PRK12299 obgE GTPase CgtA; Rev 99.7 3.6E-16 7.9E-21 142.7 12.8 120 166-299 200-329 (335)
155 TIGR02528 EutP ethanolamine ut 99.7 1.1E-16 2.4E-21 128.5 6.4 99 174-294 38-141 (142)
156 cd00882 Ras_like_GTPase Ras-li 99.7 4.5E-16 9.7E-21 124.4 9.4 112 170-294 44-156 (157)
157 cd00881 GTP_translation_factor 99.7 1.3E-15 2.8E-20 127.8 12.2 119 164-297 55-186 (189)
158 COG2229 Predicted GTPase [Gene 99.6 1.3E-15 2.8E-20 123.6 10.5 125 155-296 51-176 (187)
159 cd01881 Obg_like The Obg-like 99.6 7.1E-16 1.5E-20 128.0 9.4 125 165-296 37-175 (176)
160 TIGR02729 Obg_CgtA Obg family 99.6 1E-15 2.2E-20 139.7 10.6 127 156-297 193-328 (329)
161 PF08477 Miro: Miro-like prote 99.6 5.2E-16 1.1E-20 120.8 7.4 70 170-249 49-119 (119)
162 PRK15494 era GTPase Era; Provi 99.6 1.1E-15 2.4E-20 140.3 10.0 121 158-298 87-216 (339)
163 KOG3883|consensus 99.6 4.5E-15 9.7E-20 116.3 11.7 137 142-299 38-176 (198)
164 cd01879 FeoB Ferrous iron tran 99.6 2.6E-15 5.6E-20 122.4 10.9 118 158-296 30-155 (158)
165 cd04164 trmE TrmE (MnmE, ThdF, 99.6 8E-15 1.7E-19 119.0 13.4 106 165-297 43-156 (157)
166 cd01889 SelB_euk SelB subfamil 99.6 3.6E-15 7.9E-20 126.2 10.9 111 169-298 66-186 (192)
167 cd01888 eIF2_gamma eIF2-gamma 99.6 4E-15 8.6E-20 127.2 9.0 114 170-297 82-198 (203)
168 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2E-14 4.4E-19 136.0 14.3 114 161-300 241-362 (442)
169 PRK03003 GTP-binding protein D 99.6 8.1E-15 1.8E-19 140.5 11.5 115 163-299 78-200 (472)
170 PRK12296 obgE GTPase CgtA; Rev 99.6 8.5E-15 1.8E-19 138.9 11.4 136 158-300 193-342 (500)
171 TIGR03594 GTPase_EngA ribosome 99.6 1.4E-14 3.1E-19 137.6 13.0 118 164-299 213-345 (429)
172 cd01895 EngA2 EngA2 subfamily. 99.6 2.6E-14 5.6E-19 117.8 12.6 113 165-295 44-172 (174)
173 TIGR03156 GTP_HflX GTP-binding 99.6 1.3E-14 2.8E-19 133.6 11.8 118 158-296 223-350 (351)
174 PRK05291 trmE tRNA modificatio 99.6 2.3E-14 5.1E-19 136.2 13.2 112 160-299 252-371 (449)
175 cd01894 EngA1 EngA1 subfamily. 99.6 9.4E-15 2E-19 118.7 8.9 111 164-297 38-157 (157)
176 TIGR01393 lepA GTP-binding pro 99.6 1.6E-14 3.5E-19 141.3 12.0 109 171-298 70-180 (595)
177 PRK12297 obgE GTPase CgtA; Rev 99.6 3.8E-14 8.2E-19 132.8 13.6 121 166-300 200-329 (424)
178 KOG0090|consensus 99.6 6.6E-15 1.4E-19 121.9 7.5 125 162-296 73-237 (238)
179 PRK03003 GTP-binding protein D 99.6 2.7E-14 5.9E-19 136.9 11.9 118 164-299 252-383 (472)
180 TIGR00487 IF-2 translation ini 99.6 4E-14 8.6E-19 138.0 13.1 114 165-295 128-247 (587)
181 TIGR00436 era GTP-binding prot 99.6 2.5E-14 5.3E-19 127.6 10.6 111 169-298 46-164 (270)
182 PF00009 GTP_EFTU: Elongation 99.5 1.4E-13 2.9E-18 116.2 14.0 125 158-297 55-186 (188)
183 cd04168 TetM_like Tet(M)-like 99.5 1.4E-13 2.9E-18 120.3 12.8 83 155-252 48-130 (237)
184 KOG1673|consensus 99.5 2.6E-14 5.7E-19 112.3 6.8 130 157-299 51-187 (205)
185 CHL00189 infB translation init 99.5 1E-13 2.2E-18 137.3 11.8 112 170-297 294-409 (742)
186 cd01883 EF1_alpha Eukaryotic e 99.5 4.7E-14 1E-18 121.9 8.4 125 156-287 62-194 (219)
187 PRK05306 infB translation init 99.5 1.2E-13 2.6E-18 137.8 12.4 116 165-296 331-450 (787)
188 PRK15467 ethanolamine utilizat 99.5 8E-14 1.7E-18 114.3 9.2 105 175-300 41-149 (158)
189 PRK05433 GTP-binding protein L 99.5 1.2E-13 2.5E-18 135.4 11.9 110 170-298 73-184 (600)
190 PRK11058 GTPase HflX; Provisio 99.5 2.4E-13 5.2E-18 128.1 13.1 116 165-299 238-363 (426)
191 TIGR00475 selB selenocysteine- 99.5 1.1E-13 2.5E-18 135.2 11.1 127 158-299 37-167 (581)
192 PRK00093 GTP-binding protein D 99.5 1.1E-13 2.4E-18 131.7 10.2 111 162-295 40-159 (435)
193 cd04163 Era Era subfamily. Er 99.5 1.6E-13 3.4E-18 112.1 9.5 111 169-296 49-167 (168)
194 cd00880 Era_like Era (E. coli 99.5 2.1E-13 4.5E-18 110.1 9.9 111 170-296 44-162 (163)
195 PRK00454 engB GTP-binding prot 99.5 1.7E-13 3.6E-18 116.0 9.0 110 170-298 69-194 (196)
196 TIGR01394 TypA_BipA GTP-bindin 99.4 4.9E-13 1.1E-17 130.7 11.6 128 156-298 49-191 (594)
197 cd04166 CysN_ATPS CysN_ATPS su 99.4 2.6E-13 5.5E-18 116.4 8.5 117 157-288 63-184 (208)
198 TIGR00483 EF-1_alpha translati 99.4 2.5E-13 5.5E-18 128.8 9.1 124 156-290 70-199 (426)
199 TIGR03594 GTPase_EngA ribosome 99.4 4.4E-13 9.6E-18 127.3 10.8 113 163-298 39-160 (429)
200 PRK00093 GTP-binding protein D 99.4 7E-13 1.5E-17 126.2 12.2 116 165-298 215-344 (435)
201 KOG4423|consensus 99.4 1.5E-13 3.3E-18 111.2 6.4 118 171-300 75-196 (229)
202 TIGR03680 eif2g_arch translati 99.4 3.9E-13 8.4E-18 126.5 9.6 114 170-297 79-195 (406)
203 PF02421 FeoB_N: Ferrous iron 99.4 3.7E-13 8E-18 109.1 8.0 113 157-293 33-156 (156)
204 PRK10218 GTP-binding protein; 99.4 1E-12 2.3E-17 128.3 12.7 125 158-297 55-194 (607)
205 cd01896 DRG The developmentall 99.4 1.4E-12 3.1E-17 113.7 12.2 126 161-297 37-225 (233)
206 PF09439 SRPRB: Signal recogni 99.4 3.2E-13 6.8E-18 111.9 7.4 76 169-253 47-127 (181)
207 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 5E-13 1.1E-17 115.4 8.9 131 156-299 32-177 (232)
208 PRK12317 elongation factor 1-a 99.4 7.3E-13 1.6E-17 125.6 10.8 124 155-290 68-197 (425)
209 cd04169 RF3 RF3 subfamily. Pe 99.4 1.5E-12 3.3E-17 115.6 12.1 84 155-253 55-138 (267)
210 PRK09518 bifunctional cytidyla 99.4 1.2E-12 2.7E-17 131.3 12.7 118 164-299 491-622 (712)
211 PRK00089 era GTPase Era; Revie 99.4 9.6E-13 2.1E-17 118.7 10.5 113 169-298 51-171 (292)
212 PRK04000 translation initiatio 99.4 7.8E-13 1.7E-17 124.5 10.0 114 171-298 85-201 (411)
213 TIGR03598 GTPase_YsxC ribosome 99.4 4.9E-13 1.1E-17 111.8 7.5 98 172-286 65-178 (179)
214 PRK12298 obgE GTPase CgtA; Rev 99.4 1.5E-12 3.3E-17 121.3 11.3 131 156-299 195-334 (390)
215 PRK09518 bifunctional cytidyla 99.4 1.1E-12 2.4E-17 131.6 10.6 113 165-299 317-437 (712)
216 TIGR00491 aIF-2 translation in 99.4 7E-12 1.5E-16 122.2 14.5 110 171-297 69-215 (590)
217 TIGR00437 feoB ferrous iron tr 99.4 2.5E-12 5.5E-17 126.0 11.3 118 159-297 29-154 (591)
218 KOG1532|consensus 99.4 1.6E-12 3.5E-17 111.8 8.5 118 171-299 116-265 (366)
219 cd01886 EF-G Elongation factor 99.4 9.4E-12 2E-16 110.7 13.0 83 155-252 48-130 (270)
220 cd04170 EF-G_bact Elongation f 99.3 8.7E-12 1.9E-16 111.1 12.1 83 156-253 49-131 (268)
221 PRK13768 GTPase; Provisional 99.3 3E-12 6.5E-17 112.9 5.2 116 171-297 97-246 (253)
222 cd01876 YihA_EngB The YihA (En 99.3 1.5E-11 3.3E-16 100.5 8.6 108 172-296 46-169 (170)
223 PRK13351 elongation factor G; 99.3 2.7E-11 5.8E-16 121.5 11.9 84 155-253 57-140 (687)
224 cd04165 GTPBP1_like GTPBP1-lik 99.3 4.3E-11 9.3E-16 103.6 10.9 114 166-294 79-219 (224)
225 PRK09554 feoB ferrous iron tra 99.2 3.2E-11 7E-16 121.1 10.9 114 163-297 42-167 (772)
226 cd01884 EF_Tu EF-Tu subfamily. 99.2 7E-11 1.5E-15 100.2 11.3 115 158-287 52-172 (195)
227 PRK04004 translation initiatio 99.2 4.2E-11 9.1E-16 117.1 9.8 107 173-308 73-179 (586)
228 PRK10512 selenocysteinyl-tRNA- 99.2 5.8E-11 1.3E-15 116.8 10.7 113 169-297 49-165 (614)
229 cd01885 EF2 EF2 (for archaea a 99.2 1.8E-10 3.8E-15 99.5 10.4 67 170-251 72-138 (222)
230 COG1159 Era GTPase [General fu 99.2 2.3E-10 5E-15 100.3 10.9 114 168-298 51-172 (298)
231 PF03029 ATP_bind_1: Conserved 99.2 3.4E-12 7.3E-17 111.3 -0.6 112 172-297 92-236 (238)
232 PRK00741 prfC peptide chain re 99.2 1.9E-10 4.1E-15 111.2 10.8 83 155-252 63-145 (526)
233 cd04167 Snu114p Snu114p subfam 99.1 3.6E-10 7.9E-15 97.2 11.3 67 170-251 70-136 (213)
234 TIGR00503 prfC peptide chain r 99.1 1.8E-10 3.9E-15 111.4 10.3 82 156-252 65-146 (527)
235 PRK12736 elongation factor Tu; 99.1 3.7E-10 8.1E-15 106.0 11.6 117 165-296 69-199 (394)
236 COG0486 ThdF Predicted GTPase 99.1 8.6E-10 1.9E-14 102.2 13.2 120 157-300 251-378 (454)
237 PRK05124 cysN sulfate adenylyl 99.1 1.3E-10 2.9E-15 111.2 8.1 119 157-289 93-216 (474)
238 PLN00043 elongation factor 1-a 99.1 2.9E-10 6.3E-15 108.0 10.4 123 156-288 70-203 (447)
239 PRK12735 elongation factor Tu; 99.1 4.1E-10 8.8E-15 105.8 11.2 107 164-285 68-180 (396)
240 TIGR02034 CysN sulfate adenyly 99.1 2.5E-10 5.4E-15 107.5 9.4 117 157-288 66-187 (406)
241 PTZ00141 elongation factor 1- 99.1 6.6E-10 1.4E-14 105.6 10.9 122 157-288 71-203 (446)
242 TIGR00485 EF-Tu translation el 99.1 8.8E-10 1.9E-14 103.5 11.5 106 164-284 68-179 (394)
243 PRK12740 elongation factor G; 99.0 1.7E-09 3.7E-14 108.3 10.8 83 155-252 44-126 (668)
244 COG1084 Predicted GTPase [Gene 99.0 7.8E-10 1.7E-14 98.0 7.1 126 156-297 200-335 (346)
245 COG1160 Predicted GTPases [Gen 99.0 1.2E-09 2.6E-14 100.9 8.6 110 165-297 45-164 (444)
246 KOG1489|consensus 99.0 2.2E-09 4.7E-14 94.5 9.7 123 156-295 232-364 (366)
247 CHL00071 tufA elongation facto 99.0 2.2E-09 4.8E-14 101.3 10.5 109 163-286 67-181 (409)
248 PLN03126 Elongation factor Tu; 99.0 1.7E-09 3.7E-14 103.3 9.1 109 163-286 136-250 (478)
249 cd04104 p47_IIGP_like p47 (47- 99.0 1.7E-09 3.7E-14 91.9 8.1 112 171-300 52-186 (197)
250 KOG0462|consensus 99.0 4.3E-09 9.3E-14 98.6 11.2 110 170-298 124-235 (650)
251 PRK05506 bifunctional sulfate 99.0 9.2E-10 2E-14 109.4 6.7 116 158-288 91-211 (632)
252 TIGR00484 EF-G translation elo 99.0 4.2E-09 9.2E-14 105.6 11.4 82 156-252 60-141 (689)
253 PF10662 PduV-EutP: Ethanolami 99.0 2.3E-09 4.9E-14 85.3 7.5 99 175-294 40-142 (143)
254 COG1160 Predicted GTPases [Gen 98.9 1.3E-08 2.8E-13 94.2 13.3 123 158-298 213-351 (444)
255 PRK00049 elongation factor Tu; 98.9 8.2E-09 1.8E-13 97.0 12.3 108 163-285 67-180 (396)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 1.2E-08 2.7E-13 86.5 11.6 129 158-299 36-185 (196)
257 PRK09866 hypothetical protein; 98.9 8.4E-10 1.8E-14 106.2 4.7 113 170-295 229-350 (741)
258 KOG1423|consensus 98.9 5.5E-09 1.2E-13 91.6 9.1 118 166-298 115-271 (379)
259 PF01926 MMR_HSR1: 50S ribosom 98.9 6.3E-09 1.4E-13 80.5 8.7 67 164-247 40-116 (116)
260 cd01850 CDC_Septin CDC/Septin. 98.9 1.4E-08 3.1E-13 90.7 12.0 66 171-252 63-157 (276)
261 COG0536 Obg Predicted GTPase [ 98.9 6.4E-09 1.4E-13 92.7 9.4 134 155-301 194-336 (369)
262 cd01899 Ygr210 Ygr210 subfamil 98.9 1.3E-08 2.8E-13 92.5 11.5 55 237-297 213-268 (318)
263 KOG1490|consensus 98.9 1.3E-09 2.8E-14 101.1 3.9 132 157-301 201-344 (620)
264 TIGR00490 aEF-2 translation el 98.8 1.1E-08 2.5E-13 102.9 9.5 72 166-252 81-152 (720)
265 PLN03127 Elongation factor Tu; 98.8 3.7E-08 7.9E-13 93.7 12.3 125 157-296 110-250 (447)
266 COG0370 FeoB Fe2+ transport sy 98.8 3.7E-08 8.1E-13 95.2 10.8 117 158-298 37-164 (653)
267 KOG3886|consensus 98.8 1E-08 2.2E-13 86.5 5.6 84 157-253 38-131 (295)
268 KOG1707|consensus 98.8 6.9E-09 1.5E-13 97.9 4.8 113 171-298 56-175 (625)
269 TIGR00101 ureG urease accessor 98.8 1.5E-08 3.1E-13 86.2 6.3 101 171-298 92-196 (199)
270 PRK12739 elongation factor G; 98.7 4.9E-08 1.1E-12 98.0 10.6 83 156-253 58-140 (691)
271 TIGR00157 ribosome small subun 98.7 2.9E-08 6.3E-13 87.2 7.0 96 182-295 24-120 (245)
272 PRK09602 translation-associate 98.7 1.3E-07 2.9E-12 88.4 10.9 36 171-206 72-114 (396)
273 COG2262 HflX GTPases [General 98.7 4E-07 8.8E-12 83.3 13.4 117 163-298 231-356 (411)
274 COG5256 TEF1 Translation elong 98.7 6.2E-08 1.3E-12 88.5 7.7 127 155-288 69-201 (428)
275 PRK00007 elongation factor G; 98.7 1.1E-07 2.3E-12 95.5 10.2 81 158-253 62-142 (693)
276 KOG1191|consensus 98.6 6.8E-07 1.5E-11 83.2 14.0 129 160-300 305-452 (531)
277 PTZ00327 eukaryotic translatio 98.6 1.4E-07 3E-12 89.8 7.8 113 171-297 117-232 (460)
278 PRK14845 translation initiatio 98.5 1E-06 2.2E-11 90.8 12.3 109 173-296 528-671 (1049)
279 KOG1145|consensus 98.5 1.2E-06 2.5E-11 82.6 11.4 121 159-297 190-315 (683)
280 PLN00116 translation elongatio 98.5 3.9E-07 8.5E-12 93.3 9.0 67 170-251 97-163 (843)
281 PTZ00416 elongation factor 2; 98.5 4.3E-07 9.3E-12 92.9 9.2 67 170-251 91-157 (836)
282 cd01855 YqeH YqeH. YqeH is an 98.5 1.6E-07 3.4E-12 79.2 5.0 96 184-297 24-124 (190)
283 PF04548 AIG1: AIG1 family; I 98.5 3.2E-07 6.9E-12 78.9 6.6 128 158-300 36-188 (212)
284 COG0532 InfB Translation initi 98.4 1.6E-06 3.5E-11 81.8 11.0 114 169-298 53-170 (509)
285 COG1217 TypA Predicted membran 98.4 9.3E-07 2E-11 81.8 8.0 123 161-298 58-195 (603)
286 PRK09435 membrane ATPase/prote 98.4 1.2E-06 2.6E-11 79.9 8.5 109 168-298 146-260 (332)
287 PRK07560 elongation factor EF- 98.4 9.7E-07 2.1E-11 89.3 8.6 69 169-252 85-153 (731)
288 TIGR03597 GTPase_YqeH ribosome 98.3 2.9E-07 6.3E-12 85.4 3.3 99 181-296 50-151 (360)
289 TIGR00750 lao LAO/AO transport 98.3 4.4E-06 9.5E-11 75.7 10.8 106 169-297 125-237 (300)
290 cd01853 Toc34_like Toc34-like 98.3 3.5E-06 7.7E-11 74.1 9.8 25 6-30 27-51 (249)
291 COG0481 LepA Membrane GTPase L 98.3 2E-06 4.4E-11 79.8 7.5 125 155-298 55-186 (603)
292 COG1163 DRG Predicted GTPase [ 98.3 1.3E-05 2.9E-10 71.3 11.9 124 163-297 102-288 (365)
293 COG0218 Predicted GTPase [Gene 98.2 8E-06 1.7E-10 68.2 9.3 110 173-298 72-197 (200)
294 KOG1144|consensus 98.2 3.6E-06 7.9E-11 81.7 8.1 123 173-310 542-699 (1064)
295 TIGR00073 hypB hydrogenase acc 98.2 7.4E-06 1.6E-10 70.1 8.9 57 238-296 148-205 (207)
296 smart00010 small_GTPase Small 98.2 1.6E-06 3.5E-11 67.2 4.4 76 188-287 40-115 (124)
297 TIGR00991 3a0901s02IAP34 GTP-b 98.2 1.1E-05 2.3E-10 72.6 9.1 75 167-251 82-166 (313)
298 cd01882 BMS1 Bms1. Bms1 is an 98.1 1.3E-05 2.8E-10 69.6 9.2 96 169-284 81-182 (225)
299 cd01859 MJ1464 MJ1464. This f 98.1 2.4E-06 5.3E-11 69.5 3.8 94 185-298 3-96 (156)
300 COG4108 PrfC Peptide chain rel 98.1 1.4E-05 3E-10 73.8 8.0 76 162-252 72-147 (528)
301 COG0378 HypB Ni2+-binding GTPa 98.1 1.6E-05 3.5E-10 66.0 7.5 102 171-297 97-200 (202)
302 KOG0458|consensus 98.1 4.2E-05 9.1E-10 72.9 11.1 125 156-288 240-372 (603)
303 PRK00098 GTPase RsgA; Reviewed 98.0 7.2E-06 1.6E-10 74.2 5.5 86 192-295 78-164 (298)
304 COG0480 FusA Translation elong 98.0 3E-05 6.5E-10 77.2 9.5 84 155-253 59-143 (697)
305 PF06858 NOG1: Nucleolar GTP-b 98.0 1.3E-05 2.9E-10 52.9 4.2 45 195-249 14-58 (58)
306 KOG3887|consensus 97.9 4.4E-05 9.6E-10 65.2 8.3 116 171-299 75-203 (347)
307 PRK12289 GTPase RsgA; Reviewed 97.9 1.4E-05 3E-10 73.7 5.6 91 187-296 82-173 (352)
308 cd01858 NGP_1 NGP-1. Autoanti 97.9 1.7E-05 3.7E-10 64.7 5.4 89 192-297 6-94 (157)
309 KOG3905|consensus 97.9 0.00013 2.9E-09 65.0 11.1 62 238-299 222-291 (473)
310 PRK10463 hydrogenase nickel in 97.9 0.00012 2.7E-09 65.2 10.8 57 238-296 230-287 (290)
311 COG2895 CysN GTPases - Sulfate 97.9 7.8E-05 1.7E-09 67.1 9.3 113 159-287 74-192 (431)
312 PF05783 DLIC: Dynein light in 97.8 0.00023 4.9E-09 68.0 10.8 62 239-301 197-267 (472)
313 KOG0705|consensus 97.7 4.7E-05 1E-09 72.0 5.6 116 169-300 75-191 (749)
314 PF05049 IIGP: Interferon-indu 97.7 0.00012 2.6E-09 67.6 8.0 63 171-250 86-153 (376)
315 cd01854 YjeQ_engC YjeQ/EngC. 97.7 6.7E-05 1.5E-09 67.5 5.9 86 191-295 75-161 (287)
316 smart00053 DYNc Dynamin, GTPas 97.6 0.00021 4.5E-09 62.4 7.5 69 171-253 125-207 (240)
317 COG3596 Predicted GTPase [Gene 97.6 0.00042 9.1E-09 60.7 9.1 71 169-252 85-162 (296)
318 PF00735 Septin: Septin; Inte 97.6 0.00055 1.2E-08 61.3 9.8 21 10-30 4-24 (281)
319 PRK12288 GTPase RsgA; Reviewed 97.6 0.00013 2.8E-09 67.3 5.9 87 193-295 119-205 (347)
320 COG3276 SelB Selenocysteine-sp 97.6 0.00027 5.9E-09 65.5 7.8 123 157-297 36-161 (447)
321 PRK13796 GTPase YqeH; Provisio 97.5 0.0001 2.2E-09 68.6 4.8 87 193-296 67-157 (365)
322 cd01849 YlqF_related_GTPase Yl 97.5 0.00018 3.9E-09 58.5 5.1 84 196-298 1-85 (155)
323 COG0050 TufB GTPases - transla 97.4 0.00048 1E-08 60.7 7.4 112 157-282 61-177 (394)
324 COG4917 EutP Ethanolamine util 97.4 0.0003 6.5E-09 54.1 5.3 97 176-295 42-143 (148)
325 KOG0468|consensus 97.4 0.00034 7.3E-09 67.7 6.6 68 169-251 195-262 (971)
326 PTZ00258 GTP-binding protein; 97.4 0.00072 1.6E-08 63.1 8.2 25 6-30 17-41 (390)
327 TIGR00993 3a0901s04IAP86 chlor 97.3 0.0015 3.3E-08 64.1 10.2 78 166-252 161-250 (763)
328 cd01856 YlqF YlqF. Proteins o 97.3 0.00028 6E-09 58.4 4.3 86 190-297 15-100 (171)
329 KOG0461|consensus 97.3 0.0012 2.6E-08 59.4 8.1 115 170-299 69-194 (522)
330 COG5257 GCD11 Translation init 97.2 0.00034 7.3E-09 62.4 4.1 111 171-298 86-202 (415)
331 KOG1143|consensus 97.2 0.0007 1.5E-08 61.5 6.1 103 171-288 249-378 (591)
332 TIGR02836 spore_IV_A stage IV 97.2 0.0043 9.3E-08 57.9 11.2 27 4-30 11-37 (492)
333 PRK09601 GTP-binding protein Y 97.2 0.0018 3.9E-08 59.8 8.3 20 11-30 3-22 (364)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.00029 6.4E-09 56.3 2.7 77 191-285 8-84 (141)
335 TIGR03348 VI_IcmF type VI secr 97.1 0.00087 1.9E-08 71.4 6.5 76 173-251 163-256 (1169)
336 PRK08118 topology modulation p 97.1 0.00057 1.2E-08 56.4 4.0 23 12-34 3-25 (167)
337 TIGR01425 SRP54_euk signal rec 97.1 0.0022 4.7E-08 60.5 8.2 67 169-252 181-253 (429)
338 COG0563 Adk Adenylate kinase a 97.1 0.00038 8.3E-09 58.0 2.8 21 11-31 1-21 (178)
339 TIGR03596 GTPase_YlqF ribosome 97.0 0.001 2.2E-08 59.6 5.2 88 190-299 17-104 (276)
340 PF13207 AAA_17: AAA domain; P 97.0 0.00055 1.2E-08 52.9 3.0 22 12-33 1-22 (121)
341 KOG1533|consensus 97.0 0.0003 6.5E-09 60.1 1.5 21 12-32 4-24 (290)
342 cd01900 YchF YchF subfamily. 97.0 0.003 6.5E-08 56.3 7.9 36 171-206 62-104 (274)
343 PRK07261 topology modulation p 97.0 0.00066 1.4E-08 56.2 3.4 23 12-34 2-24 (171)
344 KOG1534|consensus 96.8 0.00085 1.8E-08 56.5 2.7 21 11-31 4-24 (273)
345 KOG1707|consensus 96.8 0.021 4.7E-07 54.9 12.0 88 193-298 494-583 (625)
346 KOG2655|consensus 96.8 0.012 2.6E-07 54.0 9.9 21 10-30 21-41 (366)
347 PF13671 AAA_33: AAA domain; P 96.7 0.0011 2.4E-08 52.7 2.7 19 13-31 2-20 (143)
348 PRK09563 rbgA GTPase YlqF; Rev 96.7 0.0023 5E-08 57.6 5.1 87 191-299 21-107 (287)
349 PRK06217 hypothetical protein; 96.7 0.0013 2.7E-08 55.1 2.8 24 11-34 2-25 (183)
350 PRK00771 signal recognition pa 96.6 0.019 4E-07 54.7 10.4 23 9-31 94-116 (437)
351 PRK14722 flhF flagellar biosyn 96.6 0.014 3.1E-07 54.2 9.3 75 169-252 214-295 (374)
352 PRK14974 cell division protein 96.5 0.036 7.9E-07 50.9 11.3 22 9-30 139-160 (336)
353 PF13521 AAA_28: AAA domain; P 96.3 0.0025 5.4E-08 52.2 2.4 22 12-33 1-22 (163)
354 PRK03839 putative kinase; Prov 96.3 0.0035 7.6E-08 52.2 3.3 23 12-34 2-24 (180)
355 KOG0463|consensus 96.3 0.031 6.8E-07 51.1 9.4 61 217-288 288-348 (641)
356 PTZ00088 adenylate kinase 1; P 96.3 0.0037 8.1E-08 54.3 3.4 28 8-35 4-31 (229)
357 PRK01889 GTPase RsgA; Reviewed 96.3 0.01 2.3E-07 55.0 6.6 84 192-294 110-193 (356)
358 PF13555 AAA_29: P-loop contai 96.3 0.0058 1.3E-07 41.4 3.5 23 12-34 25-47 (62)
359 COG1126 GlnQ ABC-type polar am 96.2 0.0028 6E-08 53.8 2.3 23 12-34 30-52 (240)
360 COG4619 ABC-type uncharacteriz 96.2 0.0036 7.7E-08 51.2 2.7 24 11-34 30-53 (223)
361 COG4639 Predicted kinase [Gene 96.2 0.014 3.1E-07 46.9 6.1 17 13-29 5-21 (168)
362 PRK14532 adenylate kinase; Pro 96.2 0.0039 8.4E-08 52.3 2.8 21 12-32 2-22 (188)
363 TIGR00959 ffh signal recogniti 96.2 0.041 8.9E-07 52.2 10.0 22 10-31 99-120 (428)
364 cd02019 NK Nucleoside/nucleoti 96.1 0.0051 1.1E-07 42.7 2.9 21 13-33 2-22 (69)
365 PF13238 AAA_18: AAA domain; P 96.1 0.0045 9.8E-08 47.9 2.9 19 13-31 1-19 (129)
366 TIGR02322 phosphon_PhnN phosph 96.1 0.0045 9.8E-08 51.4 2.7 21 12-32 3-23 (179)
367 PRK10078 ribose 1,5-bisphospho 96.1 0.0045 9.7E-08 51.9 2.7 20 12-31 4-23 (186)
368 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.0046 1E-07 51.4 2.7 20 13-32 2-21 (183)
369 PRK13949 shikimate kinase; Pro 96.0 0.005 1.1E-07 50.9 2.8 22 12-33 3-24 (169)
370 PRK14530 adenylate kinase; Pro 96.0 0.0059 1.3E-07 52.4 3.4 24 12-35 5-28 (215)
371 KOG0460|consensus 96.0 0.015 3.3E-07 52.5 5.9 103 169-285 115-225 (449)
372 cd00227 CPT Chloramphenicol (C 96.0 0.02 4.4E-07 47.4 6.4 23 13-35 5-27 (175)
373 cd01428 ADK Adenylate kinase ( 96.0 0.005 1.1E-07 51.6 2.7 23 12-34 1-23 (194)
374 TIGR00064 ftsY signal recognit 96.0 0.027 5.8E-07 50.3 7.4 67 169-252 153-231 (272)
375 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0053 1.2E-07 51.2 2.7 20 12-31 5-24 (188)
376 PRK14531 adenylate kinase; Pro 95.9 0.0073 1.6E-07 50.5 3.5 24 11-34 3-26 (183)
377 KOG0410|consensus 95.9 0.038 8.2E-07 49.7 7.9 84 192-299 255-342 (410)
378 PRK08233 hypothetical protein; 95.9 0.0062 1.3E-07 50.5 2.9 21 11-31 4-24 (182)
379 PF00005 ABC_tran: ABC transpo 95.9 0.0065 1.4E-07 47.9 2.9 19 12-30 13-31 (137)
380 cd00071 GMPK Guanosine monopho 95.9 0.0068 1.5E-07 48.2 3.0 22 13-34 2-23 (137)
381 TIGR01351 adk adenylate kinase 95.9 0.0068 1.5E-07 51.8 3.1 21 12-32 1-21 (210)
382 PRK02496 adk adenylate kinase; 95.9 0.0078 1.7E-07 50.2 3.4 24 11-34 2-25 (184)
383 PRK10867 signal recognition pa 95.9 0.069 1.5E-06 50.7 10.1 21 10-30 100-120 (433)
384 PRK00625 shikimate kinase; Pro 95.8 0.0091 2E-07 49.5 3.5 21 12-32 2-22 (173)
385 PRK00279 adk adenylate kinase; 95.8 0.0085 1.9E-07 51.4 3.4 24 11-34 1-24 (215)
386 cd00820 PEPCK_HprK Phosphoenol 95.8 0.0074 1.6E-07 45.7 2.6 20 11-30 16-35 (107)
387 COG1125 OpuBA ABC-type proline 95.8 0.0066 1.4E-07 52.9 2.6 22 13-34 30-51 (309)
388 TIGR01313 therm_gnt_kin carboh 95.7 0.0067 1.5E-07 49.5 2.4 21 13-33 1-21 (163)
389 cd02021 GntK Gluconate kinase 95.7 0.0076 1.6E-07 48.4 2.7 20 13-32 2-21 (150)
390 PLN02200 adenylate kinase fami 95.7 0.0098 2.1E-07 51.9 3.4 25 9-33 42-66 (234)
391 smart00382 AAA ATPases associa 95.7 0.0085 1.8E-07 46.4 2.8 20 12-31 4-23 (148)
392 COG3839 MalK ABC-type sugar tr 95.7 0.0075 1.6E-07 55.1 2.7 19 13-31 32-50 (338)
393 KOG0465|consensus 95.6 0.068 1.5E-06 51.9 9.0 76 163-253 96-171 (721)
394 cd03238 ABC_UvrA The excision 95.6 0.009 2E-07 49.7 2.8 20 11-30 22-41 (176)
395 PRK05480 uridine/cytidine kina 95.6 0.0088 1.9E-07 51.0 2.9 26 8-33 4-29 (209)
396 cd03283 ABC_MutS-like MutS-lik 95.6 0.0084 1.8E-07 50.9 2.7 20 12-31 27-46 (199)
397 COG4598 HisP ABC-type histidin 95.6 0.011 2.3E-07 48.9 3.0 24 12-35 34-57 (256)
398 COG1136 SalX ABC-type antimicr 95.6 0.009 2E-07 51.4 2.7 20 12-31 33-52 (226)
399 TIGR03263 guanyl_kin guanylate 95.6 0.0093 2E-07 49.4 2.7 20 12-31 3-22 (180)
400 PRK14529 adenylate kinase; Pro 95.6 0.012 2.7E-07 50.8 3.4 25 11-35 1-25 (223)
401 COG1117 PstB ABC-type phosphat 95.6 0.01 2.3E-07 50.3 2.9 22 14-35 37-58 (253)
402 PF00004 AAA: ATPase family as 95.6 0.011 2.3E-07 46.0 2.8 18 13-30 1-18 (132)
403 PF04665 Pox_A32: Poxvirus A32 95.5 0.014 3.1E-07 50.8 3.8 24 7-30 10-33 (241)
404 cd01851 GBP Guanylate-binding 95.5 0.041 9E-07 47.6 6.7 50 157-206 43-103 (224)
405 PRK00300 gmk guanylate kinase; 95.5 0.0097 2.1E-07 50.5 2.7 22 11-32 6-27 (205)
406 PF13173 AAA_14: AAA domain 95.5 0.011 2.3E-07 46.4 2.7 19 12-30 4-22 (128)
407 TIGR01526 nadR_NMN_Atrans nico 95.5 0.012 2.7E-07 53.9 3.5 29 11-39 163-191 (325)
408 COG1936 Predicted nucleotide k 95.5 0.011 2.4E-07 48.4 2.8 21 11-31 1-21 (180)
409 PRK14528 adenylate kinase; Pro 95.5 0.013 2.9E-07 49.1 3.4 23 12-34 3-25 (186)
410 PRK12727 flagellar biosynthesi 95.5 0.078 1.7E-06 51.4 8.9 21 10-30 350-370 (559)
411 TIGR00235 udk uridine kinase. 95.5 0.01 2.2E-07 50.7 2.7 23 11-33 7-29 (207)
412 cd02023 UMPK Uridine monophosp 95.5 0.014 3E-07 49.3 3.5 22 13-34 2-23 (198)
413 PRK06762 hypothetical protein; 95.5 0.014 3.1E-07 47.7 3.4 23 12-34 4-26 (166)
414 PRK13695 putative NTPase; Prov 95.5 0.012 2.5E-07 48.8 2.9 20 11-30 1-20 (174)
415 cd03243 ABC_MutS_homologs The 95.4 0.011 2.4E-07 50.2 2.7 21 11-31 30-50 (202)
416 PRK14526 adenylate kinase; Pro 95.4 0.012 2.5E-07 50.5 2.9 21 11-31 1-21 (211)
417 TIGR00092 GTP-binding protein 95.4 0.1 2.2E-06 48.4 9.2 37 172-208 68-111 (368)
418 KOG3347|consensus 95.4 0.012 2.5E-07 47.1 2.5 24 8-31 5-28 (176)
419 COG1116 TauB ABC-type nitrate/ 95.4 0.012 2.5E-07 51.2 2.7 19 12-30 31-49 (248)
420 COG4615 PvdE ABC-type sideroph 95.4 0.012 2.6E-07 54.4 2.8 39 12-50 351-399 (546)
421 COG3842 PotA ABC-type spermidi 95.3 0.011 2.5E-07 54.2 2.7 19 13-31 34-52 (352)
422 PF00350 Dynamin_N: Dynamin fa 95.3 0.033 7.1E-07 45.4 5.2 65 170-248 100-168 (168)
423 cd02038 FleN-like FleN is a me 95.3 0.16 3.6E-06 40.2 9.0 65 171-250 45-109 (139)
424 COG1120 FepC ABC-type cobalami 95.3 0.012 2.7E-07 51.6 2.7 19 13-31 31-49 (258)
425 PF05729 NACHT: NACHT domain 95.3 0.013 2.8E-07 47.4 2.6 18 13-30 3-20 (166)
426 PRK05057 aroK shikimate kinase 95.3 0.014 3E-07 48.3 2.8 21 11-31 5-25 (172)
427 PRK00131 aroK shikimate kinase 95.2 0.019 4.1E-07 47.0 3.5 24 11-34 5-28 (175)
428 cd02025 PanK Pantothenate kina 95.2 0.013 2.8E-07 50.6 2.6 22 13-34 2-23 (220)
429 PRK14527 adenylate kinase; Pro 95.2 0.014 3.1E-07 49.0 2.7 23 10-32 6-28 (191)
430 PRK14738 gmk guanylate kinase; 95.2 0.015 3.2E-07 49.6 2.8 23 9-31 12-34 (206)
431 PRK06547 hypothetical protein; 95.2 0.017 3.7E-07 47.9 2.9 24 8-31 13-36 (172)
432 cd03222 ABC_RNaseL_inhibitor T 95.1 0.015 3.4E-07 48.3 2.6 19 12-30 27-45 (177)
433 COG1122 CbiO ABC-type cobalt t 95.1 0.016 3.5E-07 50.4 2.8 22 12-33 32-53 (235)
434 cd03274 ABC_SMC4_euk Eukaryoti 95.1 0.021 4.6E-07 49.0 3.5 23 13-35 28-50 (212)
435 PF07728 AAA_5: AAA domain (dy 95.1 0.017 3.8E-07 45.7 2.7 20 13-32 2-21 (139)
436 COG3638 ABC-type phosphate/pho 95.1 0.016 3.6E-07 49.8 2.6 22 12-33 32-53 (258)
437 PLN02674 adenylate kinase 95.1 0.021 4.5E-07 50.0 3.4 26 9-34 30-55 (244)
438 cd02027 APSK Adenosine 5'-phos 95.1 0.017 3.8E-07 46.5 2.7 21 13-33 2-22 (149)
439 PRK13947 shikimate kinase; Pro 95.1 0.022 4.8E-07 46.7 3.4 26 12-37 3-28 (171)
440 TIGR03574 selen_PSTK L-seryl-t 95.1 0.017 3.7E-07 50.8 2.8 20 13-32 2-21 (249)
441 cd03292 ABC_FtsE_transporter F 95.1 0.018 3.8E-07 49.2 2.8 20 12-31 29-48 (214)
442 cd02028 UMPK_like Uridine mono 95.0 0.018 4E-07 47.9 2.9 21 13-33 2-22 (179)
443 PF03193 DUF258: Protein of un 95.0 0.02 4.2E-07 46.8 2.8 20 11-30 36-55 (161)
444 cd03226 ABC_cobalt_CbiO_domain 95.0 0.018 4E-07 48.9 2.8 19 12-30 28-46 (205)
445 cd01858 NGP_1 NGP-1. Autoanti 95.0 0.02 4.3E-07 46.5 2.9 23 9-31 101-123 (157)
446 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.018 4E-07 49.3 2.8 19 12-30 32-50 (218)
447 TIGR00960 3a0501s02 Type II (G 95.0 0.018 4E-07 49.2 2.8 20 12-31 31-50 (216)
448 PRK14737 gmk guanylate kinase; 95.0 0.018 4E-07 48.3 2.7 20 12-31 6-25 (186)
449 PRK05541 adenylylsulfate kinas 95.0 0.019 4.1E-07 47.5 2.8 24 8-31 5-28 (176)
450 cd03219 ABC_Mj1267_LivG_branch 95.0 0.019 4.1E-07 49.9 2.8 19 12-30 28-46 (236)
451 cd00464 SK Shikimate kinase (S 95.0 0.024 5.3E-07 45.5 3.3 23 12-34 1-23 (154)
452 PRK08099 bifunctional DNA-bind 95.0 0.021 4.5E-07 53.8 3.3 32 7-38 216-247 (399)
453 PHA02530 pseT polynucleotide k 95.0 0.018 3.8E-07 52.0 2.7 23 12-34 4-26 (300)
454 COG4525 TauB ABC-type taurine 94.9 0.019 4.1E-07 48.2 2.6 19 12-30 33-51 (259)
455 cd03280 ABC_MutS2 MutS2 homolo 94.9 0.02 4.2E-07 48.6 2.8 20 12-31 30-49 (200)
456 cd03264 ABC_drug_resistance_li 94.9 0.019 4.2E-07 49.0 2.7 20 12-31 27-46 (211)
457 PRK04182 cytidylate kinase; Pr 94.9 0.021 4.5E-07 47.1 2.8 20 12-31 2-21 (180)
458 COG1162 Predicted GTPases [Gen 94.9 0.066 1.4E-06 48.0 6.1 89 192-296 77-165 (301)
459 TIGR01166 cbiO cobalt transpor 94.9 0.02 4.3E-07 48.1 2.7 19 12-30 20-38 (190)
460 COG0703 AroK Shikimate kinase 94.9 0.027 5.8E-07 46.4 3.3 28 11-38 3-30 (172)
461 cd03247 ABCC_cytochrome_bd The 94.9 0.021 4.6E-07 47.4 2.8 19 12-30 30-48 (178)
462 cd03265 ABC_DrrA DrrA is the A 94.9 0.021 4.5E-07 49.1 2.8 19 12-30 28-46 (220)
463 PLN02459 probable adenylate ki 94.9 0.027 5.8E-07 49.7 3.5 26 10-35 29-54 (261)
464 PRK15177 Vi polysaccharide exp 94.9 0.02 4.3E-07 49.1 2.7 20 12-31 15-34 (213)
465 cd00009 AAA The AAA+ (ATPases 94.9 0.021 4.6E-07 44.6 2.7 22 10-31 19-40 (151)
466 cd03259 ABC_Carb_Solutes_like 94.9 0.021 4.6E-07 48.8 2.8 19 12-30 28-46 (213)
467 COG1618 Predicted nucleotide k 94.9 0.032 6.9E-07 45.3 3.6 31 8-38 3-34 (179)
468 cd03269 ABC_putative_ATPase Th 94.9 0.021 4.6E-07 48.6 2.8 20 12-31 28-47 (210)
469 TIGR02673 FtsE cell division A 94.9 0.021 4.6E-07 48.7 2.8 19 12-30 30-48 (214)
470 PRK13543 cytochrome c biogenes 94.8 0.022 4.7E-07 48.9 2.8 20 12-31 39-58 (214)
471 cd03214 ABC_Iron-Siderophores_ 94.8 0.023 4.9E-07 47.3 2.8 19 12-30 27-45 (180)
472 cd03266 ABC_NatA_sodium_export 94.8 0.022 4.7E-07 48.8 2.8 20 12-31 33-52 (218)
473 cd03262 ABC_HisP_GlnQ_permease 94.8 0.022 4.8E-07 48.6 2.8 19 12-30 28-46 (213)
474 cd03223 ABCD_peroxisomal_ALDP 94.8 0.023 5E-07 46.6 2.8 19 12-30 29-47 (166)
475 cd03218 ABC_YhbG The ABC trans 94.8 0.022 4.9E-07 49.3 2.8 19 12-30 28-46 (232)
476 KOG0057|consensus 94.8 0.025 5.5E-07 54.2 3.3 25 11-35 379-403 (591)
477 TIGR02315 ABC_phnC phosphonate 94.8 0.022 4.8E-07 49.7 2.8 19 12-30 30-48 (243)
478 cd02024 NRK1 Nicotinamide ribo 94.8 0.022 4.8E-07 47.8 2.7 21 13-33 2-22 (187)
479 PRK13540 cytochrome c biogenes 94.8 0.023 5.1E-07 48.1 2.8 19 12-30 29-47 (200)
480 cd03230 ABC_DR_subfamily_A Thi 94.8 0.024 5.2E-07 46.8 2.8 19 12-30 28-46 (173)
481 cd03216 ABC_Carb_Monos_I This 94.8 0.024 5.3E-07 46.4 2.8 19 12-30 28-46 (163)
482 cd03301 ABC_MalK_N The N-termi 94.8 0.023 5.1E-07 48.5 2.8 20 12-31 28-47 (213)
483 TIGR02211 LolD_lipo_ex lipopro 94.8 0.023 5E-07 48.8 2.8 19 12-30 33-51 (221)
484 PF00485 PRK: Phosphoribulokin 94.7 0.033 7.1E-07 47.0 3.7 23 13-35 2-24 (194)
485 cd03261 ABC_Org_Solvent_Resist 94.7 0.023 5.1E-07 49.3 2.8 20 12-31 28-47 (235)
486 TIGR03608 L_ocin_972_ABC putat 94.7 0.024 5.2E-07 48.1 2.8 20 12-31 26-45 (206)
487 cd03225 ABC_cobalt_CbiO_domain 94.7 0.023 4.9E-07 48.5 2.7 19 12-30 29-47 (211)
488 cd01131 PilT Pilus retraction 94.7 0.023 5E-07 48.2 2.7 18 13-30 4-21 (198)
489 cd03235 ABC_Metallic_Cations A 94.7 0.024 5.1E-07 48.5 2.8 19 12-30 27-45 (213)
490 COG4559 ABC-type hemin transpo 94.7 0.023 4.9E-07 48.3 2.6 18 13-30 30-47 (259)
491 cd03229 ABC_Class3 This class 94.7 0.025 5.4E-07 47.0 2.8 19 12-30 28-46 (178)
492 PRK08356 hypothetical protein; 94.7 0.023 5.1E-07 47.9 2.7 21 11-31 6-26 (195)
493 PRK09825 idnK D-gluconate kina 94.7 0.024 5.2E-07 47.1 2.7 22 12-33 5-26 (176)
494 PF13479 AAA_24: AAA domain 94.7 0.02 4.3E-07 49.2 2.2 22 9-30 2-23 (213)
495 cd03258 ABC_MetN_methionine_tr 94.7 0.023 5E-07 49.2 2.7 20 12-31 33-52 (233)
496 cd03232 ABC_PDR_domain2 The pl 94.7 0.025 5.5E-07 47.6 2.8 19 12-30 35-53 (192)
497 TIGR01978 sufC FeS assembly AT 94.7 0.025 5.3E-07 49.4 2.8 19 12-30 28-46 (243)
498 cd03281 ABC_MSH5_euk MutS5 hom 94.7 0.03 6.5E-07 48.1 3.3 22 11-32 30-51 (213)
499 cd03263 ABC_subfamily_A The AB 94.7 0.024 5.2E-07 48.7 2.7 20 12-31 30-49 (220)
500 cd01120 RecA-like_NTPases RecA 94.7 0.024 5.3E-07 45.5 2.6 18 13-30 2-19 (165)
No 1
>KOG0082|consensus
Probab=100.00 E-value=3.9e-78 Score=539.28 Aligned_cols=304 Identities=65% Similarity=1.085 Sum_probs=292.2
Q ss_pred hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHH
Q psy8318 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQF 84 (313)
Q Consensus 5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i 84 (313)
++..+.+|+||||+|+|||||++||||++|..||+.+|+..|++.||.|+++++..|++|+..+++++.+|..+..+..+
T Consensus 28 ~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~~N~~~~~~~ll~a~~~~~i~~~~~~~~~d~~~~ 107 (354)
T KOG0082|consen 28 KKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIYSNIIQSLKALLRAMETLGINLDDPERENDAQKL 107 (354)
T ss_pred HhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HhhhcccCC-CCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeE
Q psy8318 85 FTLASAAEE-GDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIE 163 (313)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~ 163 (313)
......... +.+++++++.|+.||+||+||.||.|+++++++|++.||+++++||.+|+|.||++||+++|.||+|+.+
T Consensus 108 ~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e 187 (354)
T KOG0082|consen 108 TLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVE 187 (354)
T ss_pred HHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeE
Confidence 866554444 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL 243 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil 243 (313)
..|++++..+.++|+|||+++|++|.|||+++++||||+++|+|||++.||+..|++.||+.+|+++++++++.++++||
T Consensus 188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCcccccccCCcccccCcCCC----------------------CCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 244 FLNKNDLFQEKITKSPLTVCFPEYT----------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 244 v~NK~Dl~~~k~~~~~l~~~f~~~~----------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
|+||.|+|.+|+...++..+||+|. +.+.+|+|.|||+|+.+|+.+|+.+.+.|+..+
T Consensus 268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 337899999999999999999999999999999
Q ss_pred hhhcCCc
Q psy8318 302 LKDCGIR 308 (313)
Q Consensus 302 ~~~~~~~ 308 (313)
++..|+.
T Consensus 348 lk~~gl~ 354 (354)
T KOG0082|consen 348 LKDAGLI 354 (354)
T ss_pred HHHhcCC
Confidence 9999874
No 2
>KOG0085|consensus
Probab=100.00 E-value=2.1e-74 Score=477.82 Aligned_cols=302 Identities=54% Similarity=0.877 Sum_probs=288.9
Q ss_pred hhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHH
Q psy8318 6 WQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFF 85 (313)
Q Consensus 6 ~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~ 85 (313)
..++++|+|+||+|+||||||+||||++|+.||+++++..++..||.|++.+|..+|+||+.+.|++..+++++.|..+.
T Consensus 35 ~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~lvyqnif~amqaMIrAMetL~I~y~~e~nk~~A~~vr 114 (359)
T KOG0085|consen 35 DARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKLVYQNIFTAMQAMIRAMETLKIPYKREENKAHASLVR 114 (359)
T ss_pred hhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEEE
Q psy8318 86 TLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETH 165 (313)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~~ 165 (313)
+.+-.. -..|...++.+|++||.||+||+||.||++|++.|++.|++.+++||..++|.||.+|+++.+.||+|+.++.
T Consensus 115 evd~ek-Vttfe~~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYylsdldria~~~ylPTqQDvLRvRvPTTGi~eyp 193 (359)
T KOG0085|consen 115 EVDVEK-VTTFEKRYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYP 193 (359)
T ss_pred hcchHH-hhhhhHHHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhhhhhhhcCcccCcchhhhheeecCcccceecC
Confidence 764322 2568889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318 166 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL 245 (313)
Q Consensus 166 ~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~ 245 (313)
|+..++.+++.|+|||+++|++|.|||+++.+++|.+.+|+|||++.|.++.|+++|+..+|..++.-||+.+.++|+++
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccccccCCcccccCcCCC-----------------------CCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 246 NKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 246 NK~Dl~~~k~~~~~l~~~f~~~~-----------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
||.|+.++++..+.+.+|||+|. .++-++.|+|||++++||+.+|..+.++|++.++
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999997 3456899999999999999999999999999999
Q ss_pred hhcCCc
Q psy8318 303 KDCGIR 308 (313)
Q Consensus 303 ~~~~~~ 308 (313)
++.+|.
T Consensus 354 kE~NLv 359 (359)
T KOG0085|consen 354 KEYNLV 359 (359)
T ss_pred HhhccC
Confidence 998873
No 3
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=1.2e-70 Score=502.05 Aligned_cols=302 Identities=60% Similarity=1.008 Sum_probs=283.0
Q ss_pred hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHH
Q psy8318 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQF 84 (313)
Q Consensus 5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i 84 (313)
++.++.+|+||||+|+||||||+||||++|++||+++|+..|++.||.|++++|+.|+++++.++++++++++...+..+
T Consensus 16 ~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i~~~~~~~~~~~~~~ 95 (342)
T smart00275 16 KKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNIPFEDPESILDIRII 95 (342)
T ss_pred HHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998887667666
Q ss_pred Hhhhc--ccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeeccee
Q psy8318 85 FTLAS--AAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGII 162 (313)
Q Consensus 85 ~~~~~--~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~ 162 (313)
..... ......+++++++.|..||+||+||.+|.++++++++|++.||+++++||++++|.||++|+++++.||+|+.
T Consensus 96 ~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~ 175 (342)
T smart00275 96 TEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQ 175 (342)
T ss_pred hccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhCCCCCCCHHHhhheeCCccceE
Confidence 65431 1112468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
+..+.+++..+.+||+|||+.+|++|.+||+++++||||+|+++||+.+.|++..+++.+++.+|+++++++.+.++|++
T Consensus 176 ~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pii 255 (342)
T smart00275 176 ETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSII 255 (342)
T ss_pred EEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcccccccCCcccccCcCCC--------------------C---CCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEKITKSPLTVCFPEYT--------------------D---QKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 243 lv~NK~Dl~~~k~~~~~l~~~f~~~~--------------------~---~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|++||.|++.+|+...++..+||+|. . ++.+++|.|||+|..++..+|+.+.+.|++
T Consensus 256 l~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 256 LFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred EEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 1 256899999999999999999999999999
Q ss_pred hhhhhcC
Q psy8318 300 ANLKDCG 306 (313)
Q Consensus 300 ~~~~~~~ 306 (313)
.+++..|
T Consensus 336 ~~l~~~~ 342 (342)
T smart00275 336 RNLKDAG 342 (342)
T ss_pred HHHHhcC
Confidence 9988654
No 4
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=1.8e-70 Score=497.48 Aligned_cols=293 Identities=67% Similarity=1.115 Sum_probs=280.6
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHhhhcc
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASA 90 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 90 (313)
+|+||||+|+||||||+||||++|++||+++|+..|+..|+.|++++|+.|+++++.+++++.++++...++.+......
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~~~~~~~~~~~~i~~~~~~ 80 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPFGDPENEKDAKKILSFAPE 80 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999988888888777554
Q ss_pred cCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEEEEEecC
Q psy8318 91 AEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKD 170 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~~~~~~~ 170 (313)
.....+++++++.+..||+||+||++|.++++++++|++.||+++++||++++|.||.+|+++++.||+|+.+..|++++
T Consensus 81 ~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~ 160 (317)
T cd00066 81 LEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVETKFTIKN 160 (317)
T ss_pred ccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeEEEEEecc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+||+|||+.+|++|.+||+++++||||+|+++||+.+.|+...+++.+++.+|+++++++.+.++|++|++||.|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccccCcCCC-----------------------CCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318 251 FQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~-----------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~ 303 (313)
+.+|+...++..+||+|. .++.+++|+|||+|.++++.+|+.+.+.|+..+++
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l~ 316 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNLK 316 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999996 14789999999999999999999999999988775
No 5
>KOG0099|consensus
Probab=100.00 E-value=2.8e-68 Score=447.90 Aligned_cols=301 Identities=45% Similarity=0.786 Sum_probs=286.8
Q ss_pred hhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcC--CCcCCCCCHhHHHHH
Q psy8318 7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLK--IDFGDHKNADCARQF 84 (313)
Q Consensus 7 ~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~--i~~~~~~~~~~~~~i 84 (313)
++.+.|+||||+|+|||||++||||++|-.||+++|+..--+-|+.|+-+++..|+.+|..++ +++++|+++..++.|
T Consensus 37 ~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI~~Ni~eai~~iv~aM~~l~p~v~l~~~~~~~~~dYI 116 (379)
T KOG0099|consen 37 YRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDIKNNIKEAILTIVGAMSNLVPPVELANPENQFRVDYI 116 (379)
T ss_pred HHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcccCCcccchhHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred HhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEE
Q psy8318 85 FTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIET 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~ 164 (313)
+......+ ..+|+|+.+.++.||+|.+|+.||+|++||++.|+|+|||+++++|.+++|.|+.+|+|+|+.-|.|+.+.
T Consensus 117 ls~~~~~~-~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEyqLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet 195 (379)
T KOG0099|consen 117 LSVMNSPD-FDYPPEFYDHVKTLWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFET 195 (379)
T ss_pred HhcCCCCc-ccCCHHHHHHHHHHhhhhhHHHHHhccCccchhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeE
Confidence 99876554 46899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF 244 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv 244 (313)
.|.+..++++++|+|||+.+|++|..||.++.+||||+..|+|++++-||+..|++.|++.+|+++.++.++..+.+||+
T Consensus 196 ~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlF 275 (379)
T KOG0099|consen 196 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILF 275 (379)
T ss_pred EEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccccccCC--cccccCcCCC--------------------------------------CCCCeEEEEeecccCc
Q psy8318 245 LNKNDLFQEKITKS--PLTVCFPEYT--------------------------------------DQKEIYTHFTCATDTS 284 (313)
Q Consensus 245 ~NK~Dl~~~k~~~~--~l~~~f~~~~--------------------------------------~~~~~~~~~tSA~~~~ 284 (313)
+||+|+..+|+..+ .+.++||+|. ..+.+|+|+|||++++
T Consensus 276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe 355 (379)
T KOG0099|consen 276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE 355 (379)
T ss_pred ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence 99999998887654 5889999986 4567899999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhcCCc
Q psy8318 285 NIQFVFDAVTDVIIKANLKDCGIR 308 (313)
Q Consensus 285 ~v~~~f~~i~~~i~~~~~~~~~~~ 308 (313)
||+.+|....+.|+..++...+|+
T Consensus 356 nIrrVFnDcrdiIqr~hlrqyeLl 379 (379)
T KOG0099|consen 356 NIRRVFNDCRDIIQRMHLRQYELL 379 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999988874
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=1.8e-66 Score=485.51 Aligned_cols=293 Identities=55% Similarity=0.968 Sum_probs=262.1
Q ss_pred hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcC-------CCCC
Q psy8318 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFG-------DHKN 77 (313)
Q Consensus 5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~-------~~~~ 77 (313)
++.++.+||||||+|+||||||+||||++|+++|+++|+..|+++|+.|++++|+.|++++..+++++. ++++
T Consensus 53 ~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (389)
T PF00503_consen 53 KRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILEALEELGIPFSFSESSQLNEEN 132 (389)
T ss_dssp HHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCH-SSS-TT--STTH
T ss_pred HhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHHHHHHcCCCccccccccCCHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999998 5777
Q ss_pred HhHHHHHHhhhcccCCC---------CCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCcccc
Q psy8318 78 ADCARQFFTLASAAEEG---------DLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQ 148 (313)
Q Consensus 78 ~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~ 148 (313)
...+..+.......+.. .+++++++.|..||+||+||++|.++++++++|++.|||++++||++++|.||+
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~~~YFl~~l~RI~~~~Y~PT~ 212 (389)
T PF00503_consen 133 QEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDNAKYFLDNLDRIAQPDYIPTD 212 (389)
T ss_dssp HHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TTHHHHHTTHHHHHSTTB---H
T ss_pred HHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccccHHHHhhhhhhhcCCCccCCC
Confidence 77888888776555442 478899999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeecceeEEEEEe-cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 149 QDVLRTRVKTTGIIETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 149 ~dil~~~~~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
+|+++++.+|+|+.+..|.+ ++..+.++|+|||+++|++|.+||+++++||||+|+++|||.++||+..|++.+++.+|
T Consensus 213 ~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF 292 (389)
T PF00503_consen 213 EDILRCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLF 292 (389)
T ss_dssp HHHHHS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHH
T ss_pred CCeeeecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCcEEEEeecCCcccccccCCc-ccccCcCCC-----------------------CC---CCeEEEEeec
Q psy8318 228 DSICNSKWFMDTSIILFLNKNDLFQEKITKSP-LTVCFPEYT-----------------------DQ---KEIYTHFTCA 280 (313)
Q Consensus 228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~-l~~~f~~~~-----------------------~~---~~~~~~~tSA 280 (313)
+++++++++.++|++|++||.|++.+|+...+ +.++||+|. .. +.+++|.|||
T Consensus 293 ~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a 372 (389)
T PF00503_consen 293 ESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCA 372 (389)
T ss_dssp HHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEEST
T ss_pred HHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeee
Confidence 99999999999999999999999999999998 999999993 22 7899999999
Q ss_pred ccCcCHHHHHHHHHHHH
Q psy8318 281 TDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 281 ~~~~~v~~~f~~i~~~i 297 (313)
++.++++.+|+.|.+.|
T Consensus 373 ~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 373 TDTENIRKVFNAVKDII 389 (389)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCcC
Confidence 99999999999998865
No 7
>KOG0070|consensus
Probab=99.97 E-value=3.2e-32 Score=220.12 Aligned_cols=134 Identities=23% Similarity=0.377 Sum_probs=121.9
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|++.+.++++++++++||+|||.+.|.+|.+||.+++++|||+|++| +.|+.++.+.+..+++++.
T Consensus 46 vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~D----------r~Ri~eak~eL~~~l~~~~ 115 (181)
T KOG0070|consen 46 VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD----------RERIEEAKEELHRMLAEPE 115 (181)
T ss_pred CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCc----------HHHHHHHHHHHHHHHcCcc
Confidence 799999999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..++|+++++||+|++++ ++..++.+.+.... .++.++++.|||.+|+|+.+.++|+.+.+..+
T Consensus 116 l~~~~llv~aNKqD~~~a-ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGA-LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cCCceEEEEechhhcccc-CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence 899999999999999986 66666666554332 56889999999999999999999999988643
No 8
>KOG0071|consensus
Probab=99.97 E-value=1.5e-31 Score=205.11 Aligned_cols=132 Identities=23% Similarity=0.416 Sum_probs=120.9
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
..||+||+.++++++++.+++||+|||.+.|++|.+||.+..++|||+|+++ .++++++...+.++++++
T Consensus 45 ~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~----------~dr~eeAr~ELh~ii~~~ 114 (180)
T KOG0071|consen 45 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIEEARNELHRIINDR 114 (180)
T ss_pred cccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc----------hhhHHHHHHHHHHHhCCH
Confidence 4799999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
...++|+++++||+|++.+ ++..++.++|..-. +++.|+..++||.+|+++.+.|.|+...+
T Consensus 115 em~~~~~LvlANkQDlp~A-~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 115 EMRDAIILILANKQDLPDA-MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred hhhcceEEEEecCcccccc-cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 9999999999999999986 56667777664332 57889999999999999999999998654
No 9
>KOG0073|consensus
Probab=99.97 E-value=2.8e-30 Score=203.53 Aligned_cols=134 Identities=19% Similarity=0.306 Sum_probs=119.0
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
..||.|++.+++.++++++++||+|||...|+.|.+||++++++|||+|++| +.++++....+..++...
T Consensus 44 i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD----------~~r~~e~~~~L~~lL~ee 113 (185)
T KOG0073|consen 44 ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD----------RMRMQECKQELTELLVEE 113 (185)
T ss_pred cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch----------HHHHHHHHHHHHHHHhhh
Confidence 3699999999999999999999999999999999999999999999999999 999999999999999988
Q ss_pred CCCCCcEEEEeecCCcccccccCCccccc--CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~--f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
....+|++|++||+|+..+ +...++... +.++.+.+.|..+.|||.+|+++.+.|+|+++.+..
T Consensus 114 rlaG~~~Lvlank~dl~~~-l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 114 RLAGAPLLVLANKQDLPGA-LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred hhcCCceEEEEecCcCccc-cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 8999999999999999864 554444422 223325678999999999999999999999998876
No 10
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=2.3e-29 Score=210.14 Aligned_cols=132 Identities=20% Similarity=0.350 Sum_probs=116.5
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
..||+|++...+++++..+.+||+||+..+|..|..||.+++++|||+|.++ .+++.++...+.++++++
T Consensus 42 ~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd----------~~~l~e~~~~L~~ll~~~ 111 (175)
T PF00025_consen 42 TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSD----------PERLQEAKEELKELLNDP 111 (175)
T ss_dssp EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTG----------GGGHHHHHHHHHHHHTSG
T ss_pred cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccc----------ceeecccccchhhhcchh
Confidence 4799999999999999999999999999999999999999999999999998 889999999999999988
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
...++|+++++||+|+.+. +...++...+ ......+.+.++.|||.+|+|+.++|+||.++|
T Consensus 112 ~~~~~piLIl~NK~D~~~~-~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 112 ELKDIPILILANKQDLPDA-MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp GGTTSEEEEEEESTTSTTS-STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hcccceEEEEeccccccCc-chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 8889999999999998764 4444454443 223135789999999999999999999999875
No 11
>KOG0084|consensus
Probab=99.96 E-value=1.9e-29 Score=205.33 Aligned_cols=133 Identities=18% Similarity=0.243 Sum_probs=111.3
Q ss_pred eeeeccee--EEEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 155 RVKTTGII--ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 155 ~~~T~g~~--~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
+..|+|+. ..++++ +.+++++|||+||+++|....+||++|++||+|+|+++ ..+|.....|++++
T Consensus 38 ~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~----------~~SF~~v~~Wi~Ei 107 (205)
T KOG0084|consen 38 YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK----------QESFNNVKRWIQEI 107 (205)
T ss_pred hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc----------HHHhhhHHHHHHHh
Confidence 46788964 445555 45899999999999999999999999999999999999 88888888888887
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeE-EEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIY-THFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~-~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
-. ....++|.+|||||+|+.++++...+..+.|.+ ..++. +++|||+++.||+++|..+...++.+.
T Consensus 108 ~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~---~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 108 DR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEFAD---ELGIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred hh-hccCCCCeEEEeeccccHhheecCHHHHHHHHH---hcCCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 43 455678999999999999887766666555543 35666 999999999999999999999998764
No 12
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.3e-28 Score=205.21 Aligned_cols=133 Identities=26% Similarity=0.449 Sum_probs=110.4
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|++...++.+++.+++||++||+.++.+|.+||++++++|||+|+++ ..++.++..++..+++...
T Consensus 46 ~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~----------~~s~~~~~~~l~~~l~~~~ 115 (181)
T PLN00223 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDE 115 (181)
T ss_pred cCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcCHh
Confidence 477787777788888999999999999999999999999999999999998 7889999999999887766
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..++|++|++||+|+..+ ....++.+.+. .. ..+.+++++|||++|+||.++|+||.+.+..+
T Consensus 116 ~~~~piilv~NK~Dl~~~-~~~~~~~~~l~l~~~-~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 116 LRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred hCCCCEEEEEECCCCCCC-CCHHHHHHHhCcccc-CCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 678999999999998764 33334433332 22 34567788999999999999999999988654
No 13
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=4.3e-27 Score=196.51 Aligned_cols=131 Identities=24% Similarity=0.411 Sum_probs=106.4
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+.++++++.+||++|+..++.+|..||++++++|||+|+++ +.+++++.+++..+++...
T Consensus 42 ~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~----------~~s~~~~~~~l~~~~~~~~ 111 (175)
T smart00177 42 IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNEDE 111 (175)
T ss_pred CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHhhCHh
Confidence 366777666777788999999999999999999999999999999999998 7889999999999887655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCC-CCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEY-TDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~-~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
..++|++||+||+|+.+. ....++...+... ...+.+++++|||++|+||.++|+||.+.+
T Consensus 112 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 112 LRDAVILVFANKQDLPDA-MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred hcCCcEEEEEeCcCcccC-CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 567999999999998753 2323333322111 134567888999999999999999998865
No 14
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=3.8e-27 Score=193.72 Aligned_cols=128 Identities=25% Similarity=0.445 Sum_probs=103.5
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+.++.+.+.+||++|++.++.+|..||++++++|||+|+++ ..++.++..++.+++....
T Consensus 29 ~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 98 (159)
T cd04150 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERIGEAREELQRMLNEDE 98 (159)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhcHH
Confidence 356676666677788999999999999999999999999999999999998 7889999999998887666
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..++|++|++||+|+... ....++...+ ..+ ..+.+.++++||++|+||+++|+||.+
T Consensus 99 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 99 LRDAVLLVFANKQDLPNA-MSAAEVTDKLGLHSL-RNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred hcCCCEEEEEECCCCCCC-CCHHHHHHHhCcccc-CCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 667999999999998653 2222322222 222 345778889999999999999999864
No 15
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.94 E-value=8.2e-27 Score=193.53 Aligned_cols=128 Identities=24% Similarity=0.441 Sum_probs=103.3
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+...++.+++||++|+++++.+|..+|++++++|||+|+++ ..++.++..++.++++...
T Consensus 38 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~----------~~s~~~~~~~~~~~~~~~~ 107 (168)
T cd04149 38 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIDEARQELHRIINDRE 107 (168)
T ss_pred cCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------hhhHHHHHHHHHHHhcCHh
Confidence 356676666666778999999999999999999999999999999999998 6789999999999887655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..++|++|++||+|+... ....++.+.+. .. ..+.+.+++|||++|.||.++|+||.+
T Consensus 108 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 108 MRDALLLVFANKQDLPDA-MKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred hcCCcEEEEEECcCCccC-CCHHHHHHHcCCCcc-CCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 667999999999998653 33333333321 11 234567899999999999999999975
No 16
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=1.2e-26 Score=194.92 Aligned_cols=133 Identities=25% Similarity=0.429 Sum_probs=107.2
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....++..++.+++||++|++.++.+|..||++++++|||+|+++ ..++.++..++.+++....
T Consensus 46 ~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~----------~~s~~~~~~~l~~~~~~~~ 115 (182)
T PTZ00133 46 IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND----------RERIGDAREELERMLSEDE 115 (182)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhCHh
Confidence 366676666677788999999999999999999999999999999999998 7889999989998887655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..++|++|++||.|+.+. ....++...+ ... +.+.+++++|||++|+|++++|+||.+.+.++
T Consensus 116 ~~~~piilv~NK~Dl~~~-~~~~~i~~~l~~~~~-~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 116 LRDAVLLVFANKQDLPNA-MSTTEVTEKLGLHSV-RQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred hcCCCEEEEEeCCCCCCC-CCHHHHHHHhCCCcc-cCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 677999999999998652 2222332222 112 34567788999999999999999999887654
No 17
>KOG0092|consensus
Probab=99.94 E-value=6.7e-27 Score=189.75 Aligned_cols=134 Identities=16% Similarity=0.253 Sum_probs=108.9
Q ss_pred eeecc--eeEEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 156 VKTTG--IIETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 156 ~~T~g--~~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
.||+| |....+...+ ++|.||||+||++++.+-+.||++++++|.|||+++ ..+|..+..|+.++-
T Consensus 35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~----------~~SF~~aK~WvkeL~ 104 (200)
T KOG0092|consen 35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITD----------EESFEKAKNWVKELQ 104 (200)
T ss_pred ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEeccc----------HHHHHHHHHHHHHHH
Confidence 58888 5555666655 888999999999999999999999999999999999 899999999999985
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~ 303 (313)
. ....++-|.|+|||+|+...+-...+-.+.+. ...++.+++|||++|.||.++|..|.+.+.....+
T Consensus 105 ~-~~~~~~vialvGNK~DL~~~R~V~~~ea~~yA---e~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 105 R-QASPNIVIALVGNKADLLERREVEFEEAQAYA---ESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred h-hCCCCeEEEEecchhhhhhcccccHHHHHHHH---HhcCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence 4 34477889999999999874322222222222 44788999999999999999999999998865443
No 18
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.94 E-value=5.1e-26 Score=188.87 Aligned_cols=134 Identities=22% Similarity=0.344 Sum_probs=108.0
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....++++++++.+||++|++.++..|..+++++++++||+|+++ ..++.++..++..++....
T Consensus 28 ~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~----------~~s~~~~~~~~~~~~~~~~ 97 (169)
T cd04158 28 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH----------RDRVSEAHSELAKLLTEKE 97 (169)
T ss_pred CCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcChh
Confidence 466677666777888999999999999999999999999999999999998 7889999999999987655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCC--CCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT--DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~--~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..+.|++|++||+|+.++ ....++.+...... ..+.+.+++|||++|.||.++|+||.+.+...
T Consensus 98 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 98 LRDALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred hCCCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 667899999999998653 33333333322110 12356788999999999999999999887654
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=3.6e-26 Score=194.80 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=97.0
Q ss_pred eeEEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318 161 IIETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD 238 (313)
Q Consensus 161 ~~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~ 238 (313)
+....+.+++ +.+++|||+||+.++.+|..||++++++|+|||+++ ..+++++..|+..+ ......+
T Consensus 37 ~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd----------~~Sf~~l~~w~~~i-~~~~~~~ 105 (202)
T cd04120 37 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMI-DKYASED 105 (202)
T ss_pred EEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHH-HHhCCCC
Confidence 3444556654 889999999999999999999999999999999999 88898888877754 3334467
Q ss_pred CcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 239 TSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.|++||+||+|+..++.........+.+ ...++.+++|||++|.||.++|+|+.+.+...
T Consensus 106 ~piilVgNK~DL~~~~~v~~~~~~~~a~--~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 106 AELLLVGNKLDCETDREISRQQGEKFAQ--QITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CcEEEEEECcccccccccCHHHHHHHHH--hcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999986533222121122211 11356789999999999999999999988653
No 20
>KOG0078|consensus
Probab=99.94 E-value=2.2e-26 Score=190.11 Aligned_cols=132 Identities=19% Similarity=0.198 Sum_probs=109.3
Q ss_pred eeeeccee--EEEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 155 RVKTTGII--ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 155 ~~~T~g~~--~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
+..|+|+. ..+++. ..+.+++|||+||++++.+...||++|.+++.|||+++ ..+++....|++.+
T Consensus 41 ~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn----------e~Sfeni~~W~~~I 110 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN----------EKSFENIRNWIKNI 110 (207)
T ss_pred ccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc----------hHHHHHHHHHHHHH
Confidence 36788854 344555 45899999999999999999999999999999999999 78888888877776
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
- ......+|++|||||+|+..++....+..+.+. ...++.+++|||++|.||.++|..|++.++.+
T Consensus 111 ~-e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA---~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 111 D-EHASDDVVKILVGNKCDLEEKRQVSKERGEALA---REYGIKFFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred H-hhCCCCCcEEEeeccccccccccccHHHHHHHH---HHhCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence 4 345568999999999999886666655555544 33689999999999999999999999999854
No 21
>KOG0075|consensus
Probab=99.94 E-value=1e-26 Score=180.01 Aligned_cols=132 Identities=20% Similarity=0.306 Sum_probs=117.8
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|++.+.++-+++.+.+||+|||+++|.+|..|++++++++||+|.+| +..++-+...+.+++..+.
T Consensus 50 iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad----------~~k~~~sr~EL~~LL~k~~ 119 (186)
T KOG0075|consen 50 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD----------PDKLEASRSELHDLLDKPS 119 (186)
T ss_pred cccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC----------cccchhhHHHHHHHhcchh
Confidence 699999999999999999999999999999999999999999999999999 8899999999999999999
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..++|++++|||.|++++ +....+.+.+.... .++.+.++.+|+++..||+.+.+|+.+.-.
T Consensus 120 l~gip~LVLGnK~d~~~A-L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 120 LTGIPLLVLGNKIDLPGA-LSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred hcCCcEEEecccccCccc-ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 999999999999999886 55555544432221 568899999999999999999999988654
No 22
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=6e-26 Score=191.58 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=97.6
Q ss_pred EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
..+.+++ +.+++||++|++.++.+|..|+++++++|+|+|+++ ..+++++..|+.++... ..++|+
T Consensus 46 ~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~----------~~Sf~~~~~w~~~i~~~--~~~~pi 113 (189)
T cd04121 46 TTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN----------RWSFDGIDRWIKEIDEH--APGVPK 113 (189)
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCCCCE
Confidence 3444444 789999999999999999999999999999999999 89999999999888553 257999
Q ss_pred EEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 242 ILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 242 ilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+|||||.|+...+. ..++...+ . +..++.+++|||++|.||+++|+++.+.+..+
T Consensus 114 ilVGNK~DL~~~~~v~~~~~~~~-a---~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 114 ILVGNRLHLAFKRQVATEQAQAY-A---ERNGMTFFEVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred EEEEECccchhccCCCHHHHHHH-H---HHcCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999865422 22222222 1 23567899999999999999999999988754
No 23
>KOG0076|consensus
Probab=99.93 E-value=8.8e-27 Score=185.51 Aligned_cols=134 Identities=18% Similarity=0.279 Sum_probs=119.9
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|.+..+++..+..+.+||.|||+..|++|..||..+|++||++|.++ +.+++++...|+.++.+..
T Consensus 54 ~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~----------~eR~~~~~t~~~~v~~~E~ 123 (197)
T KOG0076|consen 54 TPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATD----------RERFEESKTAFEKVVENEK 123 (197)
T ss_pred ecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCC----------HHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..++|+++.+||+|+.++ +...++...|. +....+.+.+.++||.+|+||.+..+|+.+.+..+
T Consensus 124 leg~p~L~lankqd~q~~-~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 124 LEGAPVLVLANKQDLQNA-MEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcCCchhhhcchhhhhhh-hhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999875 45556666655 22245667889999999999999999999988654
No 24
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=1.9e-25 Score=185.07 Aligned_cols=129 Identities=16% Similarity=0.246 Sum_probs=104.3
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+..++.++++||++|+..++.+|..||++++++|||+|+++ ..++.++..++..+.....
T Consensus 28 ~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~----------~~s~~~~~~~l~~l~~~~~ 97 (167)
T cd04161 28 APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD----------DDRVQEVKEILRELLQHPR 97 (167)
T ss_pred cCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc----------hhHHHHHHHHHHHHHcCcc
Confidence 466777777788889999999999999999999999999999999999998 7789999999999987766
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccC--cCCC--CCCCeEEEEeecccC------cCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYT--DQKEIYTHFTCATDT------SNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~--~~~~~~~~~tSA~~~------~~v~~~f~~i~~ 295 (313)
..++|++||+||+|+.... ...++.+.+ .++. ....+++++|||++| +|+.+.|+||.+
T Consensus 98 ~~~~piliv~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 98 VSGKPILVLANKQDKKNAL-LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ccCCcEEEEEeCCCCcCCC-CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 6789999999999987642 222222221 1111 124578889999998 899999999964
No 25
>KOG0094|consensus
Probab=99.93 E-value=6.1e-26 Score=184.20 Aligned_cols=134 Identities=15% Similarity=0.145 Sum_probs=108.5
Q ss_pred eeeecceeE--EEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 155 RVKTTGIIE--THFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 155 ~~~T~g~~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
+.+|+|+.. .++.+ ..+++++|||+||++||.+-+.|++++.++|.|+|+++ .++|+.+.+|++.+
T Consensus 51 YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~----------~~Sfe~t~kWi~dv 120 (221)
T KOG0094|consen 51 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD----------RNSFENTSKWIEDV 120 (221)
T ss_pred ccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc----------cchHHHHHHHHHHH
Confidence 467788654 34444 34899999999999999999999999999999999999 99999999999999
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
.+.+...++-|+|||||.||.+++-...+..+... +..+..+.+|||+.|.||..+|..|...+....
T Consensus 121 ~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA---kel~a~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 121 RRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA---KELNAEFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred HhccCCCceEEEEEcccccccchhhhhHHHHHHHH---HHhCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 98877667889999999999876422222222111 334668899999999999999999998877654
No 26
>KOG0074|consensus
Probab=99.93 E-value=2.9e-26 Score=176.37 Aligned_cols=130 Identities=18% Similarity=0.316 Sum_probs=110.6
Q ss_pred eeecceeEEEEEecC-ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 156 VKTTGIIETHFTFKD-LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
.||.||+...+.+.+ +.+++||+|||+..|..|.+||+++|++|||+|++| ..+++|.-+.+-+++...
T Consensus 46 tpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D----------~krfeE~~~el~ELleee 115 (185)
T KOG0074|consen 46 TPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTD----------EKRFEEISEELVELLEEE 115 (185)
T ss_pred cccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCc----------hHhHHHHHHHHHHHhhhh
Confidence 588899999999966 999999999999999999999999999999999998 889999999999998888
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccc--cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTV--CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~--~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
..+.+|++++.||+|+..+ .+.+++.. .+... +.+.+++.+|||..++++....+|++...
T Consensus 116 Kl~~vpvlIfankQdllta-a~~eeia~klnl~~l-rdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 116 KLAEVPVLIFANKQDLLTA-AKVEEIALKLNLAGL-RDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred hhhccceeehhhhhHHHhh-cchHHHHHhcchhhh-hhceEEeeeCccccccCccCcchhhhcCC
Confidence 8899999999999998754 22222222 22222 56789999999999999999999987543
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=4.3e-25 Score=183.86 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=92.4
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++.+|..++.+++++|+|+|+++ ..++.....|+..+.......++|++||+||+|
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~----------~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~D 118 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD----------RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVD 118 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc----------hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 3679999999999999999999999999999999999 788888877665554433335799999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+...+....+....+. ...++.+++|||++|.||.++|+|+.+.+.+.
T Consensus 119 l~~~~~v~~~~~~~~a---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 119 LESQRQVTTEEGRNLA---REFNCPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred hhhcCccCHHHHHHHH---HHhCCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 8654322211111221 23467899999999999999999999888754
No 28
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.92 E-value=3.6e-25 Score=187.46 Aligned_cols=120 Identities=14% Similarity=0.232 Sum_probs=89.6
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK 247 (313)
+.+.+++|||+||+.++.+|..||++++++|+|||+++ +.+++++.. |...+... ..++|++||+||
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK 116 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS----------PSSYENVRHKWHPEVCHH--CPNVPILLVGTK 116 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEEeC
Confidence 34789999999999999999999999999999999999 788888864 55555332 257999999999
Q ss_pred CCcccccccCCcccc---------cCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 248 NDLFQEKITKSPLTV---------CFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 248 ~Dl~~~k~~~~~l~~---------~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.|+....-....+.+ .-..+....+ +.+++|||++|.||.++|.++.+.+...
T Consensus 117 ~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 117 KDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred hhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 998653211000000 0001112233 5799999999999999999999988654
No 29
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.92 E-value=6.7e-25 Score=183.19 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=97.8
Q ss_pred CCCccccccccceeeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHH
Q psy8318 142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221 (313)
Q Consensus 142 ~~y~Pt~~dil~~~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~ 221 (313)
++|.||..+.+.... .++-..+++++|||+|++.++.++..+|++++++|+|+|+++ ..+++
T Consensus 28 ~~~~~Ti~~~~~~~~--------~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~----------~~Sf~ 89 (176)
T cd04133 28 TDYIPTVFDNFSANV--------SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS----------RASYE 89 (176)
T ss_pred CCCCCcceeeeEEEE--------EECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC----------HHHHH
Confidence 457777755442111 112234889999999999999999999999999999999999 88998
Q ss_pred HH-HHHHHHHHhCCCCCCCcEEEEeecCCcccccc-----------cCCcccccCcCCCCCCCe-EEEEeecccCcCHHH
Q psy8318 222 ES-MKLFDSICNSKWFMDTSIILFLNKNDLFQEKI-----------TKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQF 288 (313)
Q Consensus 222 e~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~-----------~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~ 288 (313)
.. ..|+..+.... .++|++|||||+|+..++. ...+ ...+. ...++ .+++|||++|.||++
T Consensus 90 ~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~-~~~~a---~~~~~~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 90 NVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQ-GEELR---KQIGAAAYIECSSKTQQNVKA 163 (176)
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHH-HHHHH---HHcCCCEEEECCCCcccCHHH
Confidence 87 46777764432 4799999999999965431 1111 11121 22344 589999999999999
Q ss_pred HHHHHHHHHH
Q psy8318 289 VFDAVTDVII 298 (313)
Q Consensus 289 ~f~~i~~~i~ 298 (313)
+|+.+.+.++
T Consensus 164 ~F~~~~~~~~ 173 (176)
T cd04133 164 VFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 30
>KOG0394|consensus
Probab=99.92 E-value=5.7e-25 Score=176.84 Aligned_cols=135 Identities=11% Similarity=0.142 Sum_probs=100.1
Q ss_pred eeecc--eeEEEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 156 VKTTG--IIETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 156 ~~T~g--~~~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
..|+| |....+.+ +.+.++||||+||++|+++.-.+|+++|+++.|+|+.+ ..+++..-.|-++++
T Consensus 39 kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~----------~~Sfe~L~~Wr~EFl 108 (210)
T KOG0394|consen 39 KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN----------PKSFENLENWRKEFL 108 (210)
T ss_pred ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC----------hhhhccHHHHHHHHH
Confidence 45666 33344444 34889999999999999999999999999999999998 566665555655655
Q ss_pred hC---CCCCCCcEEEEeecCCccccc--ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 232 NS---KWFMDTSIILFLNKNDLFQEK--ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 232 ~~---~~~~~~piilv~NK~Dl~~~k--~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
.. .....-|++|+|||+|+.+.+ .....-.+.++. .+.++.+|+|||+++.||.++|..+.+..+.+.-
T Consensus 109 ~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~--s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 109 IQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK--SKGNIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred HhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH--hcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 42 223457999999999997632 222222222221 2367899999999999999999999999987653
No 31
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.2e-24 Score=183.26 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=103.9
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
||.+.....+.+++.++.+||++|+..++.+|..|+.+++++|||+|+++ ..++.++..++..+++....
T Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~----------~~~~~~~~~~l~~l~~~~~~ 116 (184)
T smart00178 47 PTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD----------KERFAESKRELDALLSDEEL 116 (184)
T ss_pred CccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc----------HHHHHHHHHHHHHHHcChhh
Confidence 34444455666788999999999999999999999999999999999998 77888888888888876666
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCC--------CCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYT--------DQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~--------~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
.++|+++++||+|+..+ +...++.+.+.... ..+.+.+++|||++|+|+.++++||.+.
T Consensus 117 ~~~piliv~NK~Dl~~~-~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 117 ATVPFLILGNKIDAPYA-ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCCEEEEEeCccccCC-CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 78999999999998653 44445554443221 1256789999999999999999999764
No 32
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.92 E-value=1.1e-24 Score=178.80 Aligned_cols=128 Identities=23% Similarity=0.288 Sum_probs=99.9
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+..++.++++||++|++.++.+|..++++++++|||+|+++ ..++..+..++..+.+.+.
T Consensus 30 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~ 99 (162)
T cd04157 30 VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD----------RLRLVVVKDELELLLNHPD 99 (162)
T ss_pred cCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc----------HHHHHHHHHHHHHHHcCcc
Confidence 466676666667788999999999999999999999999999999999998 7788888888888776543
Q ss_pred C--CCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 F--MDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~--~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
+ .+.|+++++||+|+..+. ....+...+ ... ....+.+++|||++|.|++++|+||.+
T Consensus 100 ~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~l~~~~~-~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 100 IKHRRVPILFFANKMDLPDAL-TAVKITQLLGLENI-KDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cccCCCCEEEEEeCccccCCC-CHHHHHHHhCCccc-cCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 3 479999999999987532 112222222 111 224567899999999999999999875
No 33
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.92 E-value=1.2e-24 Score=181.19 Aligned_cols=129 Identities=18% Similarity=0.296 Sum_probs=102.7
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+.+++..+.+||++|++.++..|..+++++++++||+|+++ ..++.+...++..++....
T Consensus 43 ~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 112 (173)
T cd04154 43 SPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD----------RLRLDDCKRELKELLQEER 112 (173)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChh
Confidence 356676666777788899999999999999999999999999999999998 7788888888888877655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..++|++|++||+|+.... ...++.+.+.... ....+.++++||++|+|+.++|+|+.+
T Consensus 113 ~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 113 LAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred hcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 5789999999999987532 2223333332110 235678999999999999999999864
No 34
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.4e-24 Score=187.68 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=93.2
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.+++.+||++|++.++.+|..||++++++|+|||+++ ..+++....|+..+... ..+.|++||+||+
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~----------~~s~~~i~~w~~~i~~~--~~~~piilvgNK~ 127 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEEch
Confidence 34799999999999999999999999999999999998 78888888888877543 2579999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+.........+ .+. ...++.+++|||++|.||.++|.|+.+.+.+.
T Consensus 128 Dl~~~~v~~~~~--~~~---~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 128 DVKNRQVKAKQV--TFH---RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred hhhhccCCHHHH--HHH---HhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 986533322222 111 23567889999999999999999999988643
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2.1e-24 Score=184.21 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=92.9
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEee
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLN 246 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~N 246 (313)
.+.+.+||++|++.++.+|..+|++++++|+|+|+++ +.+++++..|+..+... +...++|++||+|
T Consensus 49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~----------~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N 118 (201)
T cd04107 49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR----------PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN 118 (201)
T ss_pred EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence 4788999999999999999999999999999999998 88888888777766432 2235789999999
Q ss_pred cCCcccc-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 247 KNDLFQE-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 247 K~Dl~~~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+|+... .....++.+....+ ..+.+++|||++|.||.++|+|+.+.+...
T Consensus 119 K~Dl~~~~~~~~~~~~~~~~~~---~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 119 KCDLKKRLAKDGEQMDQFCKEN---GFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred CCCcccccccCHHHHHHHHHHc---CCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9998742 22233333332222 225789999999999999999999988764
No 36
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.92 E-value=2.4e-24 Score=179.66 Aligned_cols=127 Identities=18% Similarity=0.311 Sum_probs=102.0
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
||+|.....+.+++.++.+||++|++.++..|..+|++++++|||+|+++ ..++.++..++.++++....
T Consensus 45 ~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~----------~~~~~~~~~~l~~~~~~~~~ 114 (174)
T cd04153 45 PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD----------RERLPLTKEELYKMLAHEDL 114 (174)
T ss_pred CccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhh
Confidence 55666666677788999999999999999999999999999999999998 67888888888888876666
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.++|+++++||+|+... ....++.+.+. .. ..+.+.++++||++|+||+++|+||.+
T Consensus 115 ~~~p~viv~NK~Dl~~~-~~~~~i~~~l~~~~~-~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 115 RKAVLLVLANKQDLKGA-MTPAEISESLGLTSI-RDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cCCCEEEEEECCCCCCC-CCHHHHHHHhCcccc-cCCceEEEecccCCCCCHHHHHHHHhc
Confidence 77999999999998652 22223333332 11 235678899999999999999999874
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=2.6e-24 Score=180.03 Aligned_cols=116 Identities=17% Similarity=0.315 Sum_probs=93.3
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++||++||+.++..|..++++++++|+|+|+++ ..++.+...|+..+.......+.|+++|+||+|+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN----------EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 678999999999999999999999999999999998 7888888888888765444457899999999998
Q ss_pred cccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 251 FQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 251 ~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..++ +...+..+ +. ...++.++++||++|.|++++|+++.+.+.++
T Consensus 133 ~~~~~v~~~~~~~-~~---~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 133 EDQRQVSEEQAKA-LA---DKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred hhcCccCHHHHHH-HH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 6542 22222222 21 12356789999999999999999999887653
No 38
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.91 E-value=3.2e-24 Score=177.13 Aligned_cols=129 Identities=17% Similarity=0.328 Sum_probs=104.7
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|.....+.+++..+.+||++|++.++..|..+++++++++||+|+++ ..++.+...++..++....
T Consensus 35 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~----------~~~~~~~~~~~~~~~~~~~ 104 (167)
T cd04160 35 TPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTD----------RERFEESKSALEKVLRNEA 104 (167)
T ss_pred CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECch----------HHHHHHHHHHHHHHHhChh
Confidence 567787777788889999999999999999999999999999999999998 5678888889988887666
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..+.|++|++||+|+... ....++...+.++. ....+.++++||++|+|+.++|+||.+
T Consensus 105 ~~~~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 105 LEGVPLLILANKQDLPDA-LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred hcCCCEEEEEEccccccC-CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 678999999999998653 22233333333221 224578999999999999999999975
No 39
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.91 E-value=1.9e-24 Score=178.22 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=92.5
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++|||+|++.++.+|..++++++++++|+|+++ ..++++...++..+.+.....+.|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 117 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 4678899999999999999999999999999999998 788888888888887655557899999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..++.........+. ...++.++++||++|.|+.++|.|+.+.+
T Consensus 118 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 118 LEDERVVGKEQGQNLA---RQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred chhccEEcHHHHHHHH---HHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 8754322211111121 12346899999999999999999998765
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.91 E-value=1.9e-24 Score=177.58 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=90.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++.+|..|+++++++++|+|+++ ..++++...+++.+.......+.|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS----------QSSFNDLQDLREQILRVKDTENVPMVLVGNKCD 117 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3678899999999999999999999999999999998 788888888888876644446789999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..++....+....+. ...++.++++||++|.|+.++|+++.+.+
T Consensus 118 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 118 LEDERVVSREEGQALA---RQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ccccceecHHHHHHHH---HHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 8653211111111111 11236789999999999999999998765
No 41
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.91 E-value=4.8e-24 Score=179.31 Aligned_cols=121 Identities=22% Similarity=0.329 Sum_probs=93.7
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+++.+.+|||+|++.++.+|..++++++++|+|+|+++ ..++.++..++..+.......+.|++|++||+
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~ 119 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD----------VERMEEAKTELHKITRFSENQGVPVLVLANKQ 119 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhhhcCCCcEEEEEECc
Confidence 45789999999999999999999999999999999998 67788888787777654444578999999999
Q ss_pred CcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+... ....++.... .+......++++++||++|+|+.++|++|.+.+...
T Consensus 120 D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 120 DLPNA-LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred Ccccc-CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence 98653 2222222211 111122346789999999999999999999988643
No 42
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.91 E-value=3.2e-24 Score=181.18 Aligned_cols=129 Identities=22% Similarity=0.349 Sum_probs=102.6
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
||.|.....+.+++..+.+||++|+..++..|..++++++++++|+|+++ ..++.++..++..++.....
T Consensus 49 ~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~----------~~s~~~~~~~~~~i~~~~~~ 118 (190)
T cd00879 49 PTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD----------PERFQESKEELDSLLSDEEL 118 (190)
T ss_pred CccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHcCccc
Confidence 44555556677788999999999999999999999999999999999998 67888888899998876556
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCC------------CCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYT------------DQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
.+.|+++++||+|+... +...++.+.+..+. ..+.+.+++|||++|+|+.++|+|+.+.
T Consensus 119 ~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 119 ANVPFLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 77999999999998642 33334444332211 1244678999999999999999999875
No 43
>KOG0086|consensus
Probab=99.91 E-value=2e-24 Score=168.33 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=101.0
Q ss_pred eeecceeE--EEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 156 VKTTGIIE--THFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 156 ~~T~g~~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
..|+|+.. .-+.+ +.++++||||+||+++|+....||+++.+.++|+|+++ ..++.+.-.|+...-
T Consensus 39 sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts----------rdsfnaLtnWL~DaR 108 (214)
T KOG0086|consen 39 SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RDSFNALTNWLTDAR 108 (214)
T ss_pred cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc----------hhhHHHHHHHHHHHH
Confidence 35666433 22333 45899999999999999999999999999999999998 677776666666652
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
. ....++.++|++||.|+..++-........|. ..+.+-+++|||.+|+||++.|-....+|+.+
T Consensus 109 ~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~Fa---qEnel~flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 109 T-LASPNIVVILCGNKKDLDPEREVTFLEASRFA---QENELMFLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred h-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhh---cccceeeeeecccccccHHHHHHHHHHHHHHH
Confidence 2 23467889999999999876543333333343 44678899999999999999999999998855
No 44
>KOG0072|consensus
Probab=99.91 E-value=1.5e-25 Score=172.99 Aligned_cols=134 Identities=20% Similarity=0.293 Sum_probs=117.3
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
..||+|++...+++++.++++||.+||.+.|..|.-||++++++|||||.+| ..++.-+...|-.++..+
T Consensus 46 tkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd----------~dris~a~~el~~mL~E~ 115 (182)
T KOG0072|consen 46 TKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD----------RDRISIAGVELYSMLQEE 115 (182)
T ss_pred cCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccc----------hhhhhhhHHHHHHHhccH
Confidence 3699999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccc--cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTV--CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~--~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.++++-++|++||+|.... +...+... .++.. +++.+.++.+||.+|+|++++++|+.+.+.++
T Consensus 116 eLq~a~llv~anKqD~~~~-~t~~E~~~~L~l~~L-k~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 116 ELQHAKLLVFANKQDYSGA-LTRSEVLKMLGLQKL-KDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred hhcCceEEEEeccccchhh-hhHHHHHHHhChHHH-hhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 9999999999999998774 33333222 22333 56779999999999999999999999988654
No 45
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.91 E-value=3.4e-24 Score=177.05 Aligned_cols=126 Identities=17% Similarity=0.303 Sum_probs=98.6
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+..+++++.+||++|+..++.+|..++++++++|||+|+++ ..++.++..++..+....
T Consensus 29 ~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~----------~~s~~~~~~~l~~~~~~~- 97 (164)
T cd04162 29 VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD----------SERLPLARQELHQLLQHP- 97 (164)
T ss_pred cccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCC-
Confidence 355566555667788999999999999999999999999999999999998 678888888888886543
Q ss_pred CCCCcEEEEeecCCcccccccCCccccc--CcCCCCCCCeEEEEeeccc------CcCHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYTDQKEIYTHFTCATD------TSNIQFVFDAVT 294 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~--f~~~~~~~~~~~~~tSA~~------~~~v~~~f~~i~ 294 (313)
.++|+++|+||+|+..++ ....+... ...+...+++++++|||++ ++||.++|+.+.
T Consensus 98 -~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 98 -PDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred -CCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 579999999999987643 21221111 2233344678889999888 999999998765
No 46
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.91 E-value=4.6e-24 Score=174.89 Aligned_cols=127 Identities=20% Similarity=0.341 Sum_probs=98.4
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
||+|+....+++++.++++||++|++.++..|..++++++++|+|+|+++ ..++.....++..+++....
T Consensus 29 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 98 (158)
T cd04151 29 PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD----------RDRLGTAKEELHAMLEEEEL 98 (158)
T ss_pred CccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhh
Confidence 45666666677788999999999999999999999999999999999998 56677777777777665555
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.+.|+++++||+|+.++. ...++...+. .. ...++.++++||++|.|+.++|+|+.+
T Consensus 99 ~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 99 KGAVLLVFANKQDMPGAL-SEAEISEKLGLSEL-KDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCcEEEEEeCCCCCCCC-CHHHHHHHhCcccc-CCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 679999999999986532 1122222221 11 234567999999999999999999975
No 47
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.91 E-value=5.3e-24 Score=175.96 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=91.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+++.+||++|++.++..|..++++++++|+|+|+++ ..+++....|+..+... ...+.|+++++||+|
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D 118 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNL-TNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcc
Confidence 4788999999999999999999999999999999998 78888888888776443 235689999999999
Q ss_pred cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+..++... .+... +. ...++.++++||++|.||.++|.++++.+.+
T Consensus 119 l~~~~~~~~~~~~~-~~---~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 119 LEAQRDVTYEEAKQ-FA---DENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred cccccCcCHHHHHH-HH---HHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 87643221 22222 21 2245789999999999999999999988754
No 48
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.91 E-value=5.2e-24 Score=177.86 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=84.4
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+.+++||++|++.++.+|..++++++++|+|+|+++ ..++++... |+..+... ..++|++|++||+|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~D 116 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CPKTPFLLVGTQID 116 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHh
Confidence 788999999999999999999999999999999998 788888765 55555332 24689999999999
Q ss_pred cccccccCCcccccC---------cCCCCC-CCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCF---------PEYTDQ-KEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 250 l~~~k~~~~~l~~~f---------~~~~~~-~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+.......+.+...- ..+.+. +.+.+++|||++|.||.++|+.+.+.
T Consensus 117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 865321111110000 001011 23689999999999999999998774
No 49
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.91 E-value=6.2e-24 Score=178.34 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=87.6
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+.+++|||+|++.++.+|..+|++++++|+|+|+++ ..++++. ..|+..+... ..++|++|||||
T Consensus 51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK 118 (182)
T cd04172 51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCK 118 (182)
T ss_pred EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEeEC
Confidence 34789999999999999999999999999999999998 7888887 4666665432 246899999999
Q ss_pred CCccccc-------------ccCCcccccCcCCCCCCC-eEEEEeecccCcC-HHHHHHHHHHHHH
Q psy8318 248 NDLFQEK-------------ITKSPLTVCFPEYTDQKE-IYTHFTCATDTSN-IQFVFDAVTDVII 298 (313)
Q Consensus 248 ~Dl~~~k-------------~~~~~l~~~f~~~~~~~~-~~~~~tSA~~~~~-v~~~f~~i~~~i~ 298 (313)
+|+.... +...+. ..+. ...+ +.+++|||++|.| |.++|..+.+..+
T Consensus 119 ~DL~~~~~~~~~~~~~~~~~v~~~~~-~~~a---~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 119 SDLRTDLTTLVELSNHRQTPVSYDQG-ANMA---KQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred hhhhcChhhHHHHHhcCCCCCCHHHH-HHHH---HHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 9985420 111111 1121 2345 4799999999998 9999999988643
No 50
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=1e-23 Score=174.50 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=92.2
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.+.+.+|||+|++.+..+|..++.+++++|+|+|+++ ..++.....|+..+.... .++|+++|+||+
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~ 114 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS----------RVTYKNVPNWHRDLVRVC--GNIPIVLCGNKV 114 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC--CCCcEEEEEEch
Confidence 45789999999999999999999999999999999998 788888877888775543 279999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|+..+.... . ...+. ..+.+.+++|||++|.||.++|++|.+.+.+
T Consensus 115 Dl~~~~~~~-~-~~~~~---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 115 DIKDRKVKA-K-QITFH---RKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred hcccccCCH-H-HHHHH---HHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 987432221 1 11122 2356789999999999999999999998865
No 51
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.91 E-value=1.1e-23 Score=181.59 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=99.4
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
||+|.......++.+.+.+||++|++.++.+|..||++++++|+|+|+++ ..++.+...++..+... ..
T Consensus 30 ~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~----------~~Sf~~l~~~~~~l~~~-~~ 98 (220)
T cd04126 30 STVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN----------VQSLEELEDRFLGLTDT-AN 98 (220)
T ss_pred CccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cC
Confidence 45554444444566789999999999999999999999999999999998 78888888888887653 34
Q ss_pred CCCcEEEEeecCCccccc--------------------ccCCcccccCcCCC----------CCCCeEEEEeecccCcCH
Q psy8318 237 MDTSIILFLNKNDLFQEK--------------------ITKSPLTVCFPEYT----------DQKEIYTHFTCATDTSNI 286 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k--------------------~~~~~l~~~f~~~~----------~~~~~~~~~tSA~~~~~v 286 (313)
.++|++||+||+|+.... +..++......+.. ....+.+++|||++|.||
T Consensus 99 ~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V 178 (220)
T cd04126 99 EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNV 178 (220)
T ss_pred CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCH
Confidence 578999999999986510 11111111111110 001257899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy8318 287 QFVFDAVTDVIIKANL 302 (313)
Q Consensus 287 ~~~f~~i~~~i~~~~~ 302 (313)
.++|.++.+.++...+
T Consensus 179 ~elf~~i~~~~~~~~~ 194 (220)
T cd04126 179 DELFEYLFNLVLPLIL 194 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998886544
No 52
>KOG0087|consensus
Probab=99.91 E-value=7.4e-24 Score=174.37 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=109.6
Q ss_pred eeecceeEE--EEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 156 VKTTGIIET--HFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 156 ~~T~g~~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
.+|+|+... .+.+ +-++.+||||+||+++|.....||+++.+++.|+|++. ..+++....|+.++.
T Consensus 44 ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr----------~~Tfenv~rWL~ELR 113 (222)
T KOG0087|consen 44 KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITR----------RQTFENVERWLKELR 113 (222)
T ss_pred ccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechh----------HHHHHHHHHHHHHHH
Confidence 578896544 3444 34889999999999999999999999999999999998 888998889999986
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
.+ .-.+++++|||||+||...+....+-.+.|.+ ..++++++|||.++.||+++|..+...|.....
T Consensus 114 dh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae---~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 114 DH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE---KEGLFFLETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred hc-CCCCeEEEEeecchhhhhccccchhhhHhHHH---hcCceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence 54 44689999999999997755455555555543 367899999999999999999999998876543
No 53
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=1.2e-23 Score=172.53 Aligned_cols=128 Identities=24% Similarity=0.406 Sum_probs=98.4
Q ss_pred eecceeEEEEEe-cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 157 KTTGIIETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 157 ~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
||+|+....+.. ++..+.+||++|++.++..|..++.+++++|||+|+++ ..++.++..++.+++....
T Consensus 29 ~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~----------~~~~~~~~~~~~~~~~~~~ 98 (160)
T cd04156 29 PTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD----------EARLDESQKELKHILKNEH 98 (160)
T ss_pred CccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHhchh
Confidence 445544444444 35789999999999999999999999999999999998 6788888889998887666
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..+.|++|++||+|+... ....++...+ ..+...+++.+++|||++|+||.++|++|.+
T Consensus 99 ~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 99 IKGVPVVLLANKQDLPGA-LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred hcCCCEEEEEECcccccC-cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 678999999999998642 2222222221 2232335678899999999999999999864
No 54
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=7.1e-24 Score=174.49 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=89.8
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+++||++|++.++.+|..|+++++++|+|+|+++ ..++.+...|+..+.......+.|+++++||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl 118 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN----------QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 568899999999999999999999999999999998 7888888888888766544467999999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
..++.........+. ...++.+++|||++|.|+.++|.++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 119 ESEREVSSAEGRALA---EEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred hhcCccCHHHHHHHH---HHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 653211111112221 11346789999999999999999998754
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.91 E-value=9.5e-24 Score=177.36 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=91.5
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+..++ +.+++||++|++.++.+|..++++++++++|+|+++ ..++++...|+..+.... ....| +
T Consensus 41 ~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~----------~~s~~~i~~~~~~~~~~~-~~~~p-i 108 (182)
T cd04128 41 TISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTR----------KSTLNSIKEWYRQARGFN-KTAIP-I 108 (182)
T ss_pred EEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCCCE-E
Confidence 344443 789999999999999999999999999999999998 788888888888876532 23467 6
Q ss_pred EEeecCCcccccc--cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 243 LFLNKNDLFQEKI--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 243 lv~NK~Dl~~~k~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+|+||+|+..+.- ....+.+...++....++.+++|||++|.||+++|+++.+.+.+.
T Consensus 109 lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 109 LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred EEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 7899999853210 000111111111122456789999999999999999999988753
No 56
>PTZ00369 Ras-like protein; Provisional
Probab=99.91 E-value=9e-24 Score=178.58 Aligned_cols=119 Identities=17% Similarity=0.085 Sum_probs=92.9
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.+.+++|||+|++.++.+|..|+++++++|+|+|+++ ..++++...|+..+.+.....+.|+++++||+
T Consensus 51 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 120 (189)
T PTZ00369 51 ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS----------RSSFEEIASFREQILRVKDKDRVPMILVGNKC 120 (189)
T ss_pred EEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 34678999999999999999999999999999999998 77888888888877654444578999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..+..........+. ...++.+++|||++|.||.++|.|+.+.+...
T Consensus 121 Dl~~~~~i~~~~~~~~~---~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 121 DLDSERQVSTGEGQELA---KSFGIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred ccccccccCHHHHHHHH---HHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 98643211111111111 12346789999999999999999999988654
No 57
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=1.2e-23 Score=182.54 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=90.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+.+++|||+|++.++.++..||++++++|+|+|+++ ..+++.+ ..|+..+... ..+.|++||+||
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK 126 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWKAEIMDY--CPSTRILLIGCK 126 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 34789999999999999999999999999999999999 7888875 4566666432 246899999999
Q ss_pred CCcccc-------------cccCCcccccCcCCCCCCCe-EEEEeecccCc-CHHHHHHHHHHHHHHhhh
Q psy8318 248 NDLFQE-------------KITKSPLTVCFPEYTDQKEI-YTHFTCATDTS-NIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 248 ~Dl~~~-------------k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~-~v~~~f~~i~~~i~~~~~ 302 (313)
+|+... .+...+. +.+. ...++ .+++|||++|+ ||+++|..+...+++..+
T Consensus 127 ~DL~~~~~~~~~l~~~~~~~Vs~~e~-~~~a---~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 127 TDLRTDLSTLMELSNQKQAPISYEQG-CALA---KQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred cccccccchhhhhccccCCcCCHHHH-HHHH---HHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 998542 1111111 1121 33455 58999999998 899999999998876543
No 58
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.90 E-value=1.1e-23 Score=172.44 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=89.2
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++||++|++.++.+|..|+++++++++|+|+++ ..++.+...++..+.......+.|++|++||+|+
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 118 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS----------RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 568899999999999999999999999999999998 6777777777777765444467899999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
........+..... ...++.++++||++|.|+.++|+++.+.+
T Consensus 119 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 119 AARTVSSRQGQDLA----KSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ccceecHHHHHHHH----HHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 76322222222211 22356789999999999999999998754
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.90 E-value=1.1e-23 Score=175.65 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=84.8
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK 247 (313)
+.+.+++|||+|++.++.+|..++++++++|+|+|+++ +.++.+... |+..+... ..++|++||+||
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~--~~~~piilvgnK 114 (174)
T cd01871 47 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK 114 (174)
T ss_pred EEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeC
Confidence 34788999999999999999999999999999999998 788888764 55544332 247999999999
Q ss_pred CCcccccccCCcc-------------cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 248 NDLFQEKITKSPL-------------TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 248 ~Dl~~~k~~~~~l-------------~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+|+...+.....+ .+...++ +.+.+++|||++|+||.++|+.+.+.
T Consensus 115 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 115 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI---GAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hhhccChhhHHHHhhccCCCCCHHHHHHHHHHc---CCcEEEEecccccCCHHHHHHHHHHh
Confidence 9986432111111 1111111 22478999999999999999998763
No 60
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.90 E-value=1.8e-23 Score=172.10 Aligned_cols=118 Identities=17% Similarity=0.152 Sum_probs=91.9
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+++ +.+++||++|++.+..+|..++.+++++++|+|+++ .+++++...|++.+.+. ...+.|++
T Consensus 41 ~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~-~~~~~~ii 109 (161)
T cd04117 41 TIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS----------ERSYQHIMKWVSDVDEY-APEGVQKI 109 (161)
T ss_pred EEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEE
Confidence 444443 678999999999999999999999999999999998 78999988888877543 33578999
Q ss_pred EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+++||.|+..++....+....+.+ ..++.+++|||++|.||+++|+||.+.
T Consensus 110 lvgnK~Dl~~~~~v~~~~~~~~~~---~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 110 LIGNKADEEQKRQVGDEQGNKLAK---EYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEECcccccccCCCHHHHHHHHH---HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 999999986543222222222221 234678999999999999999999864
No 61
>KOG0079|consensus
Probab=99.90 E-value=6.8e-24 Score=164.49 Aligned_cols=133 Identities=19% Similarity=0.277 Sum_probs=112.4
Q ss_pred eeeecce--eEEEEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 155 RVKTTGI--IETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 155 ~~~T~g~--~~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
+..|+|+ ...++++. .++++|||++||+++|.+...||++.++++.|+|+++ ..++.....|++++
T Consensus 37 YitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn----------~ESF~Nv~rWLeei 106 (198)
T KOG0079|consen 37 YITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFNNVKRWLEEI 106 (198)
T ss_pred eEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcc----------hhhhHhHHHHHHHH
Confidence 5677884 45566663 4899999999999999999999999999999999999 78999999999998
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
-++. ...|-+|||||.|..++++...+-...|. ...++.+|+|||++.+|++..|.-|.+++++.++
T Consensus 107 ~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A---~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~ 173 (198)
T KOG0079|consen 107 RNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFA---LQMGIELFETSAKENENVEAMFHCITKQVLQAKL 173 (198)
T ss_pred HhcC--ccccceecccCCCCccceeeehHHHHHHH---HhcCchheehhhhhcccchHHHHHHHHHHHHHHH
Confidence 6542 36899999999999988777665444444 3468899999999999999999999999987763
No 62
>KOG0098|consensus
Probab=99.90 E-value=9.3e-24 Score=170.19 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=108.4
Q ss_pred eeccee----EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 157 KTTGII----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 157 ~T~g~~----~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
.|+|+. ..+++-+.+++++|||+||+++|+....||+++.++|+|+|++. ..+|...-.|++.+..
T Consensus 37 ~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~----------r~sF~hL~~wL~D~rq 106 (216)
T KOG0098|consen 37 LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR----------RESFNHLTSWLEDARQ 106 (216)
T ss_pred ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc----------hhhHHHHHHHHHHHHH
Confidence 567753 33444467999999999999999999999999999999999998 7888877788888765
Q ss_pred CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
. ...+..|+|++||+|+...+....+..+.|. +.+++-+++|||++++||++.|......|.+..
T Consensus 107 ~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA---~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 107 H-SNENMVIMLIGNKSDLEARREVSKEEGEAFA---REHGLIFMETSAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred h-cCCCcEEEEEcchhhhhccccccHHHHHHHH---HHcCceeehhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4 2468899999999999876655555556665 347888899999999999999999999998663
No 63
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=1.4e-23 Score=177.52 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=91.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CCCCCcEEEEeec
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WFMDTSIILFLNK 247 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~~~~piilv~NK 247 (313)
.+.+++|||+|++.++..|..||++++++|+|+|+++ .++++....++..+.... ...+.|++||+||
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK 115 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS----------RSTFERVERFREQIQRVKDESAADVPIMIVGNK 115 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEC
Confidence 3679999999999999999999999999999999998 777777777777665432 1357899999999
Q ss_pred CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
+|+..++.........+. ...++.++++||++|.||.++|+++.+.+..+..
T Consensus 116 ~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 116 CDKVYEREVSTEEGAALA---RRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred hhccccCccCHHHHHHHH---HHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 998643221111111121 2235678999999999999999999998876543
No 64
>KOG0080|consensus
Probab=99.90 E-value=9.3e-24 Score=165.98 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=99.7
Q ss_pred eeccee--EEEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 157 KTTGII--ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 157 ~T~g~~--~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
.|+|+. ...+.+ ...++.+|||+||++||.+.+.||+++.++|.|+|++. +.+|...-.|+.++-.
T Consensus 42 ~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~----------Rdtf~kLd~W~~Eld~ 111 (209)
T KOG0080|consen 42 TTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTS----------RDTFVKLDIWLKELDL 111 (209)
T ss_pred ceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccc----------hhhHHhHHHHHHHHHh
Confidence 458853 344444 45889999999999999999999999999999999998 6666666556655533
Q ss_pred CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
-....++-.+||+||+|...++....+..-.|. +++++-++++||++.+||+..|+.+...|++
T Consensus 112 Ystn~diikmlVgNKiDkes~R~V~reEG~kfA---r~h~~LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 112 YSTNPDIIKMLVGNKIDKESERVVDREEGLKFA---RKHRCLFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred hcCCccHhHhhhcccccchhcccccHHHHHHHH---HhhCcEEEEcchhhhccHHHHHHHHHHHHhc
Confidence 333356788999999997754443333222333 5578899999999999999999999998875
No 65
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.90 E-value=2.4e-23 Score=171.96 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=90.0
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++..|..++++++++++|+|+++ ..++++...|+..+... ...++|+++++||+|
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D 117 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTY-SWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcc
Confidence 4789999999999999999999999999999999998 78888888888776432 335789999999999
Q ss_pred cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+..++... ....+ +. ...++.++++||++|.|+.++|+++.+.+.
T Consensus 118 l~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 118 MEDERVVSSERGRQ-LA---DQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred cCcccccCHHHHHH-HH---HHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 86543221 11111 11 123467899999999999999999998764
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.90 E-value=2.9e-23 Score=170.92 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=91.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+.+||++|++.++..|..++++++++++|+|+++ ..++++...++..+.......+.|+++++||+|
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~D 116 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD----------RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCD 116 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4788999999999999999999999999999999998 778888888877776654445789999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+..++.........+. ...+..++++||++|.|+.++|+++.+.+.
T Consensus 117 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 117 LESERVVSTEEGKELA---RQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ccccceEcHHHHHHHH---HHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 8653221111111121 113467899999999999999999998764
No 67
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=3.6e-23 Score=177.90 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=94.7
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++||++|++.+...|..++++++++|+|+|+++ ..++++...|+..+........+|++|++||.|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN----------RESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 689999999999999999999999999999999998 7889999888888876544456889999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
...+....+....+. ...++.++++||++|+||.++|++|.+.+..+
T Consensus 122 ~~~~~v~~~~~~~~~---~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 122 ESQRQVTREEAEKLA---KDLGMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ccccccCHHHHHHHH---HHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 753222211222222 22457899999999999999999999988765
No 68
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.90 E-value=2.1e-23 Score=177.47 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=93.5
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.+++++|||+|++.++.+|..||++++++|+|+|+++ ..+++....|...+... ..++|++||+||+
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~----------~~S~~~i~~w~~~i~~~--~~~~piilvgNK~ 109 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA----------RVTYKNVPNWHRDLVRV--CENIPIVLCGNKV 109 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 45899999999999999999999999999999999999 78888888887777653 2479999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..+.+....+ + +. ...++.+++|||++|.||.++|.|+.+.+.+.
T Consensus 110 Dl~~~~v~~~~~-~-~~---~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 110 DVKDRKVKAKSI-T-FH---RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred ccccccCCHHHH-H-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 986532222111 1 11 33567899999999999999999999988654
No 69
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=3.7e-23 Score=173.13 Aligned_cols=114 Identities=15% Similarity=0.211 Sum_probs=86.9
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK 247 (313)
+.+.+++|||+|++.++.++..+|++++++|+|+|+++ ..++++. ..|+..+... ..++|++|||||
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~----------~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK 114 (178)
T cd04131 47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR----------PETLDSVLKKWRGEIQEF--CPNTKVLLVGCK 114 (178)
T ss_pred EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHH--CCCCCEEEEEEC
Confidence 34789999999999999999999999999999999998 8888886 4666665432 247899999999
Q ss_pred CCcccc-------------cccCCcccccCcCCCCCCCe-EEEEeecccCcC-HHHHHHHHHHHHH
Q psy8318 248 NDLFQE-------------KITKSPLTVCFPEYTDQKEI-YTHFTCATDTSN-IQFVFDAVTDVII 298 (313)
Q Consensus 248 ~Dl~~~-------------k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~-v~~~f~~i~~~i~ 298 (313)
+|+..+ .+...+ ...+. ...++ .+++|||++|+| |.++|..+.+..+
T Consensus 115 ~DL~~~~~~~~~~~~~~~~~v~~~e-~~~~a---~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 115 TDLRTDLSTLMELSHQRQAPVSYEQ-GCAIA---KQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred hhhhcChhHHHHHHhcCCCCCCHHH-HHHHH---HHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 998542 011111 11121 23454 689999999995 9999999988544
No 70
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.90 E-value=3.1e-23 Score=178.84 Aligned_cols=118 Identities=14% Similarity=0.247 Sum_probs=91.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEEEeec
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIILFLNK 247 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piilv~NK 247 (313)
.+.+++||++|++.++.+|..++++++++|+|+|+++ ..+++....|+..+..... ..++|+++|+||
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~----------~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK 118 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTN----------SQSFENLEDWYSMVRKVLKSSETQPLVVLVGNK 118 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence 4789999999999999999999999999999999998 7788877777777654321 245789999999
Q ss_pred CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.|+...+....+....+. ...++.++++||++|+||.++|+++.+.+...
T Consensus 119 ~DL~~~~~v~~~~~~~~~---~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 119 TDLEHNRTVKDDKHARFA---QANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred cccccccccCHHHHHHHH---HHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 998743211111111222 22356789999999999999999999998764
No 71
>KOG0093|consensus
Probab=99.90 E-value=1.6e-23 Score=162.32 Aligned_cols=137 Identities=19% Similarity=0.225 Sum_probs=103.4
Q ss_pred eeeecceeEEEEEe----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 155 RVKTTGIIETHFTF----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 155 ~~~T~g~~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
...|+|+....-++ +.+++++|||+||+++|.+...||+++.++|+++|+++ ..++.....|...
T Consensus 50 fvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN----------eeSf~svqdw~tq- 118 (193)
T KOG0093|consen 50 FVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNSVQDWITQ- 118 (193)
T ss_pred eeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC----------HHHHHHHHHHHHH-
Confidence 36777865332222 45899999999999999999999999999999999998 3344333333333
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhhc
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDC 305 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~~ 305 (313)
+..-...++|+||++||||+..+++...+-...|.+ ..++.++++||+.+.||..+|+.+.+.|-++...++
T Consensus 119 Iktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~---~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 119 IKTYSWDNAQVILVGNKCDMDSERVISHERGRQLAD---QLGFEFFETSAKENINVKQVFERLVDIICDKMSESL 190 (193)
T ss_pred heeeeccCceEEEEecccCCccceeeeHHHHHHHHH---HhChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence 333344689999999999999887766554444432 257789999999999999999999999877655443
No 72
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.90 E-value=7.9e-23 Score=174.22 Aligned_cols=115 Identities=20% Similarity=0.321 Sum_probs=91.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++++...|+..+... ....|++||+||+|+
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~----------~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl 122 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECccc
Confidence 678999999999999999999999999999999998 78888888888877543 246899999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
...+.........+. ...++.++++||++|.||.++|+++.+.++..
T Consensus 123 ~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 123 PERKVVETEDAYKFA---GQMGISLFETSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred ccccccCHHHHHHHH---HHcCCEEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 653221111111111 12346789999999999999999999988764
No 73
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.89 E-value=4.3e-23 Score=174.44 Aligned_cols=119 Identities=12% Similarity=0.198 Sum_probs=88.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+++||++|++.++.+|..+|++++++|+|+|+++ .++++... .|+..+... ..+.|++||+||+
T Consensus 47 ~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~----------~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~ 114 (189)
T cd04134 47 HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS----------PDSLENVESKWLGEIREH--CPGVKLVLVALKC 114 (189)
T ss_pred EEEEEEEECCCChhccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 4789999999999999999999999999999999999 77887765 366665432 2478999999999
Q ss_pred CcccccccCC--------ccc--ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKS--------PLT--VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~--------~l~--~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+........ .+. +..........+.+++|||++|.||.++|+|+.+.++..
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 115 DLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred hhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 9875421110 000 000000011236789999999999999999999988754
No 74
>KOG0095|consensus
Probab=99.89 E-value=1.7e-23 Score=162.49 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=107.4
Q ss_pred eeecce--eEEEEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 156 VKTTGI--IETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 156 ~~T~g~--~~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
..|+|+ ...+++++ .+++++|||+||+++|+....||+.++++|+|+|++. .++...+.+++...++..
T Consensus 37 gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc-------qpsfdclpewlreie~ya 109 (213)
T KOG0095|consen 37 GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC-------QPSFDCLPEWLREIEQYA 109 (213)
T ss_pred CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc-------CcchhhhHHHHHHHHHHh
Confidence 467774 45566664 4899999999999999999999999999999999997 344677788888887776
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
++ ++--|||+||.|+.+++-.+..+.+.|.+. ..+|+.+|||++.+||+.+|..++-.+....
T Consensus 110 n~----kvlkilvgnk~d~~drrevp~qigeefs~~---qdmyfletsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 110 NN----KVLKILVGNKIDLADRREVPQQIGEEFSEA---QDMYFLETSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred hc----ceEEEeeccccchhhhhhhhHHHHHHHHHh---hhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 64 456799999999988766666666666644 6789999999999999999999998887543
No 75
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=6.7e-23 Score=169.23 Aligned_cols=115 Identities=20% Similarity=0.253 Sum_probs=90.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.+...|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|+++++||+|
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~D 118 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLQEIDRY-ASENVNKLLVGNKCD 118 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC----------HHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChh
Confidence 3678999999999999999999999999999999998 77888888888776442 234689999999999
Q ss_pred cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+..++... ..... +. ...++.++++||++|.||.++|.++.+.+.+
T Consensus 119 l~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 119 LTDKRVVDYSEAQE-FA---DELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred cccccCCCHHHHHH-HH---HHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 86543221 11111 11 2245679999999999999999999998753
No 76
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.89 E-value=5.2e-23 Score=168.95 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=86.2
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+++ +.+.+||++|++. ..++++++++++|+|+++ ..+++++..|+..+.......++|++
T Consensus 39 ~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~i~~~~~~~~~pii 103 (158)
T cd04103 39 EVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN----------EASFQTVYNLYHQLSSYRNISEIPLI 103 (158)
T ss_pred EEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 344444 6799999999964 357789999999999999 89999999999988776555679999
Q ss_pred EEeecCCcccc--cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQE--KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 243 lv~NK~Dl~~~--k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
|++||.|+... +.........+.+ ..+.+.+++|||++|.||+++|+++.+.
T Consensus 104 lvgnK~Dl~~~~~~~v~~~~~~~~~~--~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 104 LVGTQDAISESNPRVIDDARARQLCA--DMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEeeHHHhhhcCCcccCHHHHHHHHH--HhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 99999998532 1111111111211 1135789999999999999999998764
No 77
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.89 E-value=7.1e-23 Score=169.75 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=88.6
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC---CCCCCcEEEEe
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK---WFMDTSIILFL 245 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---~~~~~piilv~ 245 (313)
+.+.+++||++|++.++.+|..++++++++|+|+|+++ ..+++....|...+.... ...+.|++|++
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 121 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD----------SQSFQNLSNWKKEFIYYADVKEPESFPFVVLG 121 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 34788999999999999999999999999999999998 677777766766665432 23568999999
Q ss_pred ecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 246 NKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 246 NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
||+|+....+...+..+...++ ..+.++++||++|.|+.++|+++.+.
T Consensus 122 nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 122 NKNDIPERQVSTEEAQAWCREN---GDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ECccccccccCHHHHHHHHHHC---CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 9999864333333333332222 23478999999999999999999864
No 78
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=1e-22 Score=168.53 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=91.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.+...|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|+++++||.|
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D 119 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------EKSFENIRNWMRNIEEH-ASEDVERMLVGNKCD 119 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcc
Confidence 3689999999999999999999999999999999998 77888888887777543 235789999999999
Q ss_pred ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+...+ ....+..... ...++.++++||++|.||.++|+++.+.+..
T Consensus 120 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 120 MEEKRVVSKEEGEALA----DEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred cccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 97532 1212222222 2245678999999999999999999998864
No 79
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.89 E-value=9.2e-23 Score=168.04 Aligned_cols=116 Identities=11% Similarity=0.198 Sum_probs=89.9
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC----CCCCcEEEE
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW----FMDTSIILF 244 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~----~~~~piilv 244 (313)
..+.+++|||+|++.++.+|..++++++++|+|+|+++ ..++++...|+..+..... ..+.|++++
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD----------RQSFEALDSWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence 34789999999999999999999999999999999998 6777777777777654322 256899999
Q ss_pred eecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 245 LNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 245 ~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+||+|+..++ ....+..... ...++.++++||++|.|+.++|+++.+.++
T Consensus 117 ~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 117 ANKIDLTKHRAVSEDEGRLWA----ESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EEchhcccccccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999986422 1222222221 223467899999999999999999998775
No 80
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.89 E-value=7.6e-23 Score=176.52 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=89.7
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
..+.+.+|||+|++.++.+|+.+|.+++++|+|||+++ ..+++.....|...+.. ...++|++||+||+
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~----------~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~ 115 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR----------PETLDSVLKKWQGETQE-FCPNAKVVLVGCKL 115 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEEECc
Confidence 34789999999999999999999999999999999999 78888887655544433 33579999999999
Q ss_pred CcccccccC--------Ccccc-cCcCCCCCCC-eEEEEeecccCcC-HHHHHHHHHHHHHHhh
Q psy8318 249 DLFQEKITK--------SPLTV-CFPEYTDQKE-IYTHFTCATDTSN-IQFVFDAVTDVIIKAN 301 (313)
Q Consensus 249 Dl~~~k~~~--------~~l~~-~f~~~~~~~~-~~~~~tSA~~~~~-v~~~f~~i~~~i~~~~ 301 (313)
|+....-.. .++.. .-..+++..+ +.+++|||++++| |.++|..+....+.+.
T Consensus 116 DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 116 DMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred ccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence 986531000 01110 0000102234 4799999999985 9999999999877643
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.89 E-value=1.6e-22 Score=167.83 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=90.6
Q ss_pred CceeeeEecCCCcccc-ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSER-KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r-~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+++||++|++.++ .+|..++++++++++|+|+++ ..++.....|+..+.......++|+++|+||+
T Consensus 50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 119 (170)
T cd04115 50 RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN----------MASFHSLPSWIEECEQHSLPNEVPRILVGNKC 119 (170)
T ss_pred EEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 3789999999999887 579999999999999999998 78888888888777655444679999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeeccc---CcCHHHHHHHHHHHH
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATD---TSNIQFVFDAVTDVI 297 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~---~~~v~~~f~~i~~~i 297 (313)
|+...+.........+. ....+.+++|||++ +.|+.++|.++.+.+
T Consensus 120 Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 120 DLREQIQVPTDLAQRFA---DAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cchhhcCCCHHHHHHHH---HHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 98754322222222222 22357789999999 899999999998766
No 82
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.89 E-value=1.9e-22 Score=167.58 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=89.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.+..+|..+|++++++++|+|+++ ..++.....|+..+.+.....+.|+++|+||.|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~D 117 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD----------VASLEHTRQWLEDALKENDPSSVLLFLVGTKKD 117 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChh
Confidence 3679999999999999999999999999999999998 678888888888876654445678999999999
Q ss_pred cccccc-cC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKI-TK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~-~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+..+.. .. .+....+. ...+..++++||++|.||.++|+.+.+.+.+
T Consensus 118 l~~~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 118 LSSPAQYALMEQDAIKLA---AEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred cCccccccccHHHHHHHH---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 854321 11 11111111 1234568899999999999999999887643
No 83
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.89 E-value=1.8e-22 Score=167.66 Aligned_cols=128 Identities=17% Similarity=0.302 Sum_probs=99.9
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||.|++...+...+..+.+||++|+..+...|..++++++++++|+|.++ ..++.+...++..+.....
T Consensus 43 ~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~ 112 (173)
T cd04155 43 TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSAD----------KKRLEEAGAELVELLEEEK 112 (173)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhChh
Confidence 356677666777788999999999999999999999999999999999998 6778888888888776555
Q ss_pred CCCCcEEEEeecCCcccccccCCccccc--CcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~--f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..++|+++++||+|+.... ....+.+. +..+ ..+.++++++||++|+|++++|+||++
T Consensus 113 ~~~~p~ivv~nK~D~~~~~-~~~~i~~~l~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 113 LAGVPVLVFANKQDLATAA-PAEEIAEALNLHDL-RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred hcCCCEEEEEECCCCccCC-CHHHHHHHcCCccc-CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 5679999999999986531 11122222 1222 334567889999999999999999975
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.89 E-value=1.9e-22 Score=177.15 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=92.0
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--------CCCCCcE
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--------WFMDTSI 241 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--------~~~~~pi 241 (313)
.+.+++|||+|++.++.+|..++.+++++|+|||+++ ..++++...|++++.... ...+.|+
T Consensus 47 ~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~pi 116 (247)
T cd04143 47 VYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPM 116 (247)
T ss_pred EEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcE
Confidence 3788999999999999999999999999999999998 788998888888886542 2357899
Q ss_pred EEEeecCCcccc-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 242 ILFLNKNDLFQE-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 242 ilv~NK~Dl~~~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+|++||+|+... .+...++.+.+.. ...+.++++||++|.||+++|++|....
T Consensus 117 IivgNK~Dl~~~~~v~~~ei~~~~~~---~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 117 VICGNKADRDFPREVQRDEVEQLVGG---DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEECccchhccccCHHHHHHHHHh---cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999998752 2333333333321 2357799999999999999999999855
No 85
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.88 E-value=1.5e-22 Score=167.20 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=85.7
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC--CCCCCCcEEEEee
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS--KWFMDTSIILFLN 246 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~--~~~~~~piilv~N 246 (313)
+.+.+.+||++|++.++.+|..++.+++++|+|+|+++ ..++++...+++.+... ....+.|++||+|
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTS----------KQSLEELKPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 44789999999999999999999999999999999998 67777777776655432 1235789999999
Q ss_pred cCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 247 KNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 247 K~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
|+|+...+ +......... ...++.+++|||++|.||.++|+||.+
T Consensus 117 K~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 117 KCDESHKREVSSNEGAACA----TEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CccccccCeecHHHHHHHH----HHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 99986521 2111111111 123467899999999999999999875
No 86
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=1.4e-22 Score=166.61 Aligned_cols=115 Identities=18% Similarity=0.133 Sum_probs=90.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++|||+|++.++.+|..++++++++++|+|+++ ..++.+...++..+.+.....+.|++|++||+|
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 118 (164)
T cd04145 49 WAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD----------RGSFEEVDKFHTQILRVKDRDEFPMILVGNKAD 118 (164)
T ss_pred EEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcc
Confidence 3678999999999999999999999999999999998 778888888888876643445789999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..++.........+. ...++.++++||++|.||.++|+++.+.+
T Consensus 119 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 119 LEHQRKVSREEGQELA---RKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ccccceecHHHHHHHH---HHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 8754321111111111 12346789999999999999999998754
No 87
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=2.9e-22 Score=169.12 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=91.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|++|++||.|
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~D 116 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD----------QESFENLKFWINEINRY-ARENVIKVIVANKSD 116 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCC
Confidence 4778999999999999999999999999999999998 77888888877776542 224589999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+...+.........+. ...++.++++||++|.|+.++|+++.+.+..+
T Consensus 117 l~~~~~v~~~~~~~~~---~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 117 LVNNKVVDSNIAKSFC---DSLNIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred CcccccCCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 8754322222222222 12356789999999999999999999998754
No 88
>PLN03110 Rab GTPase; Provisional
Probab=99.88 E-value=2.7e-22 Score=173.13 Aligned_cols=130 Identities=14% Similarity=0.180 Sum_probs=97.4
Q ss_pred eeccee--EEEEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 157 KTTGII--ETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 157 ~T~g~~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
||+|.. ...+.++ .+.+++||++|++.++..|..++++++++|+|+|+++ ..+++....|+..+..
T Consensus 43 ~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~ 112 (216)
T PLN03110 43 STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVQRWLRELRD 112 (216)
T ss_pred CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCC----------hHHHHHHHHHHHHHHH
Confidence 444533 2334443 3789999999999999999999999999999999998 6777777777776644
Q ss_pred CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
. ...+.|+++++||+|+...+....+....+.+ ..++.+++|||++|.||.++|+++.+.+.+.
T Consensus 113 ~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~---~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 113 H-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE---KEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred h-CCCCCeEEEEEEChhcccccCCCHHHHHHHHH---HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3 23578999999999986543222222222222 2467899999999999999999999988764
No 89
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=3.8e-22 Score=168.89 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=93.0
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.+...|..++.+++++|+|+|+++ ..++++...|+..+... ...+.|+++++||.|
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~D 117 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITN----------KASFDNIRAWLTEIKEY-AQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEEccc
Confidence 3789999999999999999999999999999999998 77888888887776543 234689999999999
Q ss_pred ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318 250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303 (313)
Q Consensus 250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~ 303 (313)
+..++ +...+..... ...++.++++||++|.|+.++|.++.+.+......
T Consensus 118 l~~~~~~~~~~~~~l~----~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 118 MSGERVVKREDGERLA----KEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred chhccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 86432 1212221111 12346789999999999999999999999877543
No 90
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.88 E-value=4.9e-22 Score=162.65 Aligned_cols=129 Identities=23% Similarity=0.321 Sum_probs=103.2
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.+|+|+....+.+++..+.+||++|+..++..|..++.+++++++|+|+++ ..++.++..++..+.....
T Consensus 28 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~~~~~~~~~~~~~~~~ 97 (158)
T cd00878 28 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD----------RERIEEAKEELHKLLNEEE 97 (158)
T ss_pred CCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcc
Confidence 456677777778888999999999999999999999999999999999998 7789999999999887655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCC-CCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEY-TDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~-~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..+.|+++++||+|+.... ...++.+.+... .....+.++++||++|.|+.++|++|..
T Consensus 98 ~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 98 LKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred cCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 6789999999999987532 111222222111 0235678999999999999999999875
No 91
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=2.9e-22 Score=170.06 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=81.3
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK 247 (313)
..+.+++|||+|++. .....+|++++++|+|+|+++ ..++++... |...+... ..++|++||+||
T Consensus 64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK 129 (195)
T cd01873 64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS----------PNSLRNVKTMWYPEIRHF--CPRVPVILVGCK 129 (195)
T ss_pred EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC----------hhHHHHHHHHHHHHHHHh--CCCCCEEEEEEc
Confidence 358899999999974 345678999999999999998 788888764 55555332 247899999999
Q ss_pred CCccccc-------------------ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 248 NDLFQEK-------------------ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 248 ~Dl~~~k-------------------~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+|+.... ....+....+. +..++.+++|||++|.||.++|+.+.+.
T Consensus 130 ~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a---~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 130 LDLRYADLDEVNRARRPLARPIKNADILPPETGRAVA---KELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred hhccccccchhhhcccccccccccCCccCHHHHHHHH---HHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9986421 00111111121 3356789999999999999999998763
No 92
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.88 E-value=4.2e-22 Score=163.92 Aligned_cols=114 Identities=16% Similarity=0.227 Sum_probs=88.3
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
..+.+++|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.+. ..+.|+++++||+
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~ 114 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR----------KITYKNLSKWYEELREY--RPEIPCIVVANKI 114 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEECc
Confidence 45789999999999999999999999999999999998 66777666777666432 2468999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+... .. .+.. .+. ...++.++++||++|.|+.++|+.+.+.+++.
T Consensus 115 Dl~~~-~~-~~~~-~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 115 DLDPS-VT-QKKF-NFA---EKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred cCchh-HH-HHHH-HHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 98532 11 1111 111 12356789999999999999999999887754
No 93
>KOG0091|consensus
Probab=99.88 E-value=7.2e-23 Score=161.41 Aligned_cols=125 Identities=12% Similarity=0.157 Sum_probs=106.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC-CCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW-FMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~-~~~~piilv~NK~ 248 (313)
.+++++|||+||+++|+....||+++-+++.|+|+++ ..+++....|.++...+-. ..++-++|||.|+
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditn----------r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKs 126 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITN----------RESFEHVENWVKEAAMATQGPDKVVFLLVGHKS 126 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccc----------hhhHHHHHHHHHHHHHhcCCCCeeEEEEecccc
Confidence 4789999999999999999999999999999999999 8999999999988755433 4567789999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh-hcCC
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK-DCGI 307 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~-~~~~ 307 (313)
|+...+....+..++|..+ +++.+.+|||++|.||++.|+-|.+.|.+...+ .+.+
T Consensus 127 DL~SqRqVt~EEaEklAa~---hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~ 183 (213)
T KOG0091|consen 127 DLQSQRQVTAEEAEKLAAS---HGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKL 183 (213)
T ss_pred chhhhccccHHHHHHHHHh---cCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceee
Confidence 9987766666666777755 899999999999999999999999999876544 4433
No 94
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=3.6e-22 Score=164.59 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=88.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+++||++|++.+..+|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|++|++||.|+
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------KQTFENVERWLKELRDH-ADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccc
Confidence 678999999999999999999999999999999998 77888888888776553 2346899999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
...+....+....+. ...++.++++||++|.|+.++|+++.+.+
T Consensus 121 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 121 RHLRAVPTEEAKAFA---EKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred cccccCCHHHHHHHH---HHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 654222211111222 22457789999999999999999998764
No 95
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=4.8e-22 Score=164.03 Aligned_cols=118 Identities=12% Similarity=0.131 Sum_probs=89.6
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+++ +.+++||++|++.++..|..++++++++++|+|+++ ..++++...|+..+... ...++|++
T Consensus 44 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~i 112 (165)
T cd01864 44 TLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR----------RSSFESVPHWIEEVEKY-GASNVVLL 112 (165)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHhHHHHHHHHHHh-CCCCCcEE
Confidence 344444 688999999999999999999999999999999998 77788877888877543 23578999
Q ss_pred EEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 243 lv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+|+||+|+...+.. ..........+ +...++++||++|.|+.++|+++.+.
T Consensus 113 vv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 113 LIGNKCDLEEQREVLFEEACTLAEKN---GMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEECcccccccccCHHHHHHHHHHc---CCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999998754211 11221211111 23468999999999999999999864
No 96
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.88 E-value=5.4e-22 Score=164.37 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=92.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..+..++++++++++|+|+++ ..++.....|+..+.... ..+.|++|++||.|
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~D 120 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQHS-NSNMTIMLIGNKCD 120 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcc
Confidence 4689999999999999999999999999999999998 788888888888775532 35789999999999
Q ss_pred ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+..++ +...+..... ...++.++++||++++|+.++|.++.+.+++
T Consensus 121 l~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 121 LESRREVSYEEGEAFA----KEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred cccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 87432 2222222222 2245789999999999999999999988764
No 97
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=7.7e-22 Score=163.77 Aligned_cols=111 Identities=7% Similarity=-0.002 Sum_probs=83.9
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+||++|++.++.+|..+|++++++|+|+|+++ ..+++....++..+.. ..++|+++|+||+|+
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl 120 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSD----------PKSFSYCAEVYKKYFM---LGEIPCLFVAAKADL 120 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHhcc---CCCCeEEEEEEcccc
Confidence 678999999999999999999999999999999998 6777777677765422 236899999999998
Q ss_pred cccccc-CCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKIT-KSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~~-~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..++.. ..+..+ +. ...++ .++++||++|.|+.++|+.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 121 DEQQQRYEVQPDE-FC---RKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred cccccccccCHHH-HH---HHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 643211 111111 11 11222 3589999999999999999998764
No 98
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.88 E-value=4.3e-22 Score=163.60 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=92.7
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
..+.+++||++|++.+...+..++++++++|+|+|+++ .++++....|+..+..... .++|++|++||.
T Consensus 46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~ 114 (162)
T PF00071_consen 46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQKYKP-EDIPIIVVGNKS 114 (162)
T ss_dssp EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHHHHST-TTSEEEEEEETT
T ss_pred cccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc-ccccceeeeccc
Confidence 34789999999999999999999999999999999999 8888888888888755433 568999999999
Q ss_pred Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+..++ +...+...... ..+..++++||+++.||.++|..+.+.++
T Consensus 115 D~~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 115 DLSDEREVSVEEAQEFAK----ELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp TGGGGSSSCHHHHHHHHH----HTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHH----HhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 988632 22223222222 23478999999999999999999998875
No 99
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.87 E-value=5.9e-22 Score=164.10 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=91.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++.+|..++++++++++|+|+++ ..+++....++..+.......+.|+++++||.|
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 117 (168)
T cd04177 48 QCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTS----------EASLNELGELREQVLRIKDSDNVPMVLVGNKAD 117 (168)
T ss_pred EEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 778888888777776543445799999999999
Q ss_pred cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+...+... .........+ ..+.++++||++|.|+.++|+++.+.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 118 LEDDRQVSREDGVSLSQQW---GNVPFYETSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred ccccCccCHHHHHHHHHHc---CCceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 87543211 1111111111 23678999999999999999999987753
No 100
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.87 E-value=9.9e-22 Score=159.85 Aligned_cols=128 Identities=20% Similarity=0.314 Sum_probs=98.9
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+..+++.+.+||++|++.++..|..++.+++++++|+|+++ ..++.....++..+.....
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 98 (159)
T cd04159 29 IPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD----------RTALEAAKNELHDLLEKPS 98 (159)
T ss_pred cCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChh
Confidence 356676666667778899999999999999999999999999999999998 5677777788888776655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..+.|+++++||+|+..+. ....+...+ ... ..+.+.++++||++|.|+.++|+++.+
T Consensus 99 ~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 99 LEGIPLLVLGNKNDLPGAL-SVDELIEQMNLKSI-TDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred hcCCCEEEEEeCccccCCc-CHHHHHHHhCcccc-cCCceEEEEEEeccCCChHHHHHHHhh
Confidence 5688999999999986532 111111111 111 234578899999999999999999865
No 101
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.87 E-value=5.9e-22 Score=162.68 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=88.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...++|++|++||.|
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D 116 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN----------RTSFEALPTWLSDARAL-ASPNIVVILVGNKSD 116 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchh
Confidence 3688999999999999999999999999999999998 67777777777766432 235789999999999
Q ss_pred cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+...+. .......... ..++.++++||+++.|+.++|+++++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 117 LADQREVTFLEASRFAQ----ENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred cchhccCCHHHHHHHHH----HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 865321 1122222222 2347899999999999999999998753
No 102
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=8.6e-22 Score=165.92 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=88.5
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+++|||+|++.+...|..++++++++|+|+|+++ ..++++... |+..+... ..+.|+++++||.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 115 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDN----------PTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKT 115 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCh
Confidence 3678999999999999999999999999999999998 778887765 55444322 2478999999999
Q ss_pred Ccccccc-----cCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 249 DLFQEKI-----TKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 249 Dl~~~k~-----~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
|+..+.- ...+..+.. ...++ .+++|||++|.||.++|.++.+.++...
T Consensus 116 Dl~~~~~~~~~v~~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 116 DLRKDKNLDRKVTPAQAESVA----KKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred hhhhCccccCCcCHHHHHHHH----HHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 9865321 111111111 11334 7899999999999999999999988654
No 103
>PLN03108 Rab family protein; Provisional
Probab=99.87 E-value=1.3e-21 Score=168.10 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=91.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++.+|..++.+++++|+|+|+++ ..++.....|+..+.... ..+.|+++++||+|
T Consensus 54 ~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~----------~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~D 122 (210)
T PLN03108 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHA-NANMTIMLIGNKCD 122 (210)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence 3678999999999999999999999999999999998 778887777777765432 35789999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+..++....+..+.+. ...++.++++||+++.||.++|+|+++.+.++
T Consensus 123 l~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 123 LAHRRAVSTEEGEQFA---KEHGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CccccCCCHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 8764322211112221 22457899999999999999999999998754
No 104
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.87 E-value=9.6e-22 Score=161.55 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=90.8
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.++.+.+||++|++.++..|..++++++++|+|+|+++ ..++..+..++..+..... .+.|+++++||+
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~ 116 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS----------EESFEKAKSWVKELQRNAS-PNIIIALVGNKA 116 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECc
Confidence 34789999999999999999999999999999999998 7788888888888765433 678999999999
Q ss_pred Ccccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 249 DLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 249 Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
|+...+. ......... ...++.++++||++|.|+.++|+++.+.+
T Consensus 117 D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 117 DLESKRQVSTEEAQEYA----DENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cccccCcCCHHHHHHHH----HHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9874321 122222221 12346799999999999999999998875
No 105
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.87 E-value=1e-21 Score=161.17 Aligned_cols=111 Identities=15% Similarity=0.217 Sum_probs=85.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++..|..++++++++++|+|+++ ..++.....|...+.. ...+.|+++++||.|
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~D 117 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTD----------RESFEAIESWKEKVEA--ECGDIPMVLVQTKID 117 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHH--hCCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 6777777676666543 235789999999999
Q ss_pred cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+..+.. ...+... +. ...++.++++||+++.|+.++|+++...
T Consensus 118 l~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 118 LLDQAVITNEEAEA-LA---KRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred cccccCCCHHHHHH-HH---HHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 865322 1112111 11 2235678999999999999999998753
No 106
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.87 E-value=1.1e-21 Score=161.38 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=87.0
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+.+||++|++.++.+|..+++++++++||+|+++ ..++.+...|++.+.... .+.|+++|+||+|
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~D 118 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSN----------KASFENCSRWVNKVRTAS--KHMPGVLVGNKMD 118 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence 4789999999999999999999999999999999998 677777777777765432 4689999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..+..........+. ...++.++++||+++.|+.++|+++.+.+
T Consensus 119 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 119 LADKAEVTDAQAQAFA---QANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred cccccCCCHHHHHHHH---HHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 8643211111111111 12346789999999999999999998865
No 107
>KOG0081|consensus
Probab=99.87 E-value=3.5e-23 Score=162.47 Aligned_cols=118 Identities=16% Similarity=0.288 Sum_probs=100.8
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++|||+||+++|++...+|+++-+.++++|+++ ..++.+...|+.++-.+-...+.-|+|++||+|+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~----------eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL 136 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTS----------EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL 136 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccc----------hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch
Confidence 679999999999999999999999999999999998 7899999999999877766778899999999999
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
...+.........+. ...++++++|||-+|.||.+..+-+.+.+.++.
T Consensus 137 ~~~R~Vs~~qa~~La---~kyglPYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 137 EDQRVVSEDQAAALA---DKYGLPYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred hhhhhhhHHHHHHHH---HHhCCCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 987665544333332 225789999999999999999988888776553
No 108
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.87 E-value=2.8e-21 Score=163.69 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=89.4
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..+|++++++|+|+|+++ ..++++...|+..+... ..++|++||+||.|+
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTD----------SSSFERAKFWVKELQNL--EEHCKIYLCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccc
Confidence 678899999999999999999999999999999998 67787777777776543 246899999999998
Q ss_pred ccccccC-----CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 251 FQEKITK-----SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 251 ~~~k~~~-----~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
....-.. .+..... ...++.++++||++|.||.++|+++.+.+.++..
T Consensus 118 ~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 170 (193)
T cd04118 118 IEQDRSLRQVDFHDVQDFA----DEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred cccccccCccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 5421011 1111111 2234678899999999999999999999876543
No 109
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.86 E-value=2.5e-21 Score=159.01 Aligned_cols=115 Identities=16% Similarity=0.249 Sum_probs=89.8
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++||++|++.+...+..++++++++|+|+|+++ ..++++...|+..+..... .++|+++++||+|+
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~ 117 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN----------RESFENLKNWLKELREYAD-PNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhc
Confidence 689999999999999999999999999999999998 7788888887777654332 47999999999997
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
........+....+. ...++.++++||++|.|+.++|+++.+.+..
T Consensus 118 ~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 118 EDQRQVSREEAEAFA---EEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred ccccCCCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 652211111111122 1235679999999999999999999998754
No 110
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.86 E-value=2e-21 Score=159.32 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=88.1
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++||++|+..++..|..++++++++++|+|+++ ..++.+...++..+.... ..+.|+++++||+|+
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN----------RQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhc
Confidence 679999999999999999999999999999999998 788888888888876532 237999999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
.............+. ...++.++++||+++.|+.++|+++.+.
T Consensus 118 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 118 SDKRQVSTEEGEKKA---KELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred cccCccCHHHHHHHH---HHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 543221111111111 1235778999999999999999999875
No 111
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.86 E-value=3.1e-21 Score=159.81 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=90.0
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC---CCCCCcEEEEee
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK---WFMDTSIILFLN 246 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---~~~~~piilv~N 246 (313)
.+.+++||++|++.+..+|..++++++++|+|+|+++ ..++++...|+..+.... ...++|+++++|
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------PKSFESLDSWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCccCCCCceEEEEEE
Confidence 3678899999999999999999999999999999997 667777766666654432 234789999999
Q ss_pred cCCcccc-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 247 KNDLFQE-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 247 K~Dl~~~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+|+... .............. ..+.++++||++|.|+.++|+++.+.+.+.
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 118 KIDLEEKRQVSTKKAQQWCQSN---GNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred CcccccccccCHHHHHHHHHHc---CCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999742 22222222222222 236789999999999999999999988765
No 112
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.86 E-value=2.1e-21 Score=161.41 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=86.5
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+++|||+|++.++..|..++++++++|+|+|+++ ..++++... |+..+... ..++|++|++||+
T Consensus 45 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 112 (174)
T smart00174 45 PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS----------PASFENVKEKWYPEVKHF--CPNTPIILVGTKL 112 (174)
T ss_pred EEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEecCh
Confidence 3679999999999999999999999999999999998 778887764 56655432 2579999999999
Q ss_pred CcccccccCCccc------------ccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKITKSPLT------------VCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~~~~~l~------------~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+..+.....++. ..+. ...+ ..++++||++|.||.++|+.+.+.++
T Consensus 113 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 113 DLREDKSTLRELSKQKQEPVTYEQGEALA---KRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred hhhhChhhhhhhhcccCCCccHHHHHHHH---HHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 9875321111111 0111 1233 37899999999999999999998774
No 113
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.86 E-value=3.9e-21 Score=159.81 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=83.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++..|..++.+++++|+|+|+++ ..++++....|...+... ..+.|+++++||+|
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~----------~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~D 115 (174)
T cd04135 47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APNVPYLLVGTQID 115 (174)
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchh
Confidence 3568899999999999999999999999999999998 677777654333333322 46799999999999
Q ss_pred cccccccCCcccccC---------cCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCF---------PEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~~~l~~~f---------~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..+......+.... ..+....+ ..+++|||++|.||.++|+.+.+.+
T Consensus 116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 116 LRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 865321111000000 00001122 3688999999999999999998765
No 114
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.86 E-value=3.6e-21 Score=157.58 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=87.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+.+||++|++.+..+|..++.+++++++|+|+++ ..+++....+++.+..... .+.|+++++||+|
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D 116 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD----------ADSFQKVKKWIKELKQMRG-NNISLVIVGNKID 116 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcc
Confidence 3679999999999999999999999999999999998 6777777777766644322 3789999999999
Q ss_pred ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+...+ +....+.... ...++.++++||+++.|+.++|+|+.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 117 LERQRVVSKSEAEEYA----KSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred cccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 87532 2222222222 12356689999999999999999998765
No 115
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.86 E-value=4.6e-21 Score=157.27 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=90.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+.+||++|++.+...|..++++++++++|+|+++ ..+++....|+..+.......++|+++++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D 117 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR----------RDTFTNLETWLNELETYSTNNDIVKMLVGNKID 117 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCc
Confidence 4789999999999999999999999999999999998 778888888777776554456799999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+............ +. ...++.++++||++|.|+.++|+++.+.
T Consensus 118 ~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 118 KENREVTREEGLK-FA---RKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ccccccCHHHHHH-HH---HHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 8743332222211 21 2246789999999999999999998765
No 116
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.86 E-value=4.2e-21 Score=157.56 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=92.0
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.+.+.+||++|+..+...|..++++++++++|+|+++ ..++.....++..+.......+.|+++++||+
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 115 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD----------MESFTATAEFREQILRVKDDDNVPLLLVGNKC 115 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence 34789999999999999999999999999999999998 77888888888887765444679999999999
Q ss_pred Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|+...+ .......... ...++.++++||++|+|+.++|+++.+++.+
T Consensus 116 D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 116 DLEDKRQVSSEEAANLA----RQWGVPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred ccccccccCHHHHHHHH----HHhCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 987631 1111111211 1134678999999999999999999987753
No 117
>PLN03118 Rab family protein; Provisional
Probab=99.86 E-value=5.6e-21 Score=164.27 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=89.9
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~~~~piilv~NK~ 248 (313)
.+.+.+|||+|++.++.+|..++++++++|+|+|+++ ..++.+...+|...+.. ....+.|++||+||+
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~----------~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~ 130 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR----------RETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV 130 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 3688999999999999999999999999999999998 67777777655554432 223568999999999
Q ss_pred CcccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..++... ..... +. ...++.++++||+++.|+.++|++|.+.+...
T Consensus 131 Dl~~~~~i~~~~~~~-~~---~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 131 DRESERDVSREEGMA-LA---KEHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred cccccCccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 986542221 11111 11 22456789999999999999999999988654
No 118
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.85 E-value=5.1e-21 Score=159.27 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=81.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+++||++|++.+...|..++++++++|+|+|+++ +.++++... |+..+.. ...+.|+++++||.
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~--~~~~~piilv~nK~ 114 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN----------PSSFQNISEKWIPEIRK--HNPKAPIILVGTQA 114 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh--hCCCCCEEEEeeCh
Confidence 3678999999999999999999999999999999998 778887754 5555543 23468999999999
Q ss_pred Ccccccc--------cCCc----ccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHH
Q psy8318 249 DLFQEKI--------TKSP----LTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 249 Dl~~~k~--------~~~~----l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
|+....- ...+ ....++ ...+ ..+++|||++|.||.++|+.+.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a---~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 115 DLRTDVNVLIQLARYGEKPVSQSRAKALA---EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hhccChhHHHHHhhcCCCCcCHHHHHHHH---HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9864210 0000 011111 1123 3789999999999999998764
No 119
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=8.4e-21 Score=161.51 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=87.1
Q ss_pred ceeeeEecCCCcccc----cc----ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CCCCCc
Q psy8318 171 LHFKMFDVGGQRSER----KK----WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WFMDTS 240 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r----~~----w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~~~~p 240 (313)
+.+++|||+|++.+. .. +..++++++++|+|+|+++ ..+++....+++.+.+.. ...++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~----------~~S~~~~~~~~~~i~~~~~~~~~~~p 118 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS----------PDSFHYVKLLRQQILETRPAGNKEPP 118 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 678899999975431 11 3345789999999999998 788888888888887653 246799
Q ss_pred EEEEeecCCcccccccCC-cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 241 IILFLNKNDLFQEKITKS-PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~~-~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
++|++||+|+...+.... .+..... +..++.+++|||++|.||.++|+.+.+.+..+
T Consensus 119 iiivgNK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 119 IVVVGNKRDQQRHRFAPRHVLSVLVR---KSWKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred EEEEEECccccccccccHHHHHHHHH---HhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 999999999966433222 2221111 12457889999999999999999999888754
No 120
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.85 E-value=5.7e-21 Score=157.61 Aligned_cols=116 Identities=14% Similarity=0.201 Sum_probs=85.3
Q ss_pred cCceeeeEecCCCcc-ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC-CCCCcEEEEee
Q psy8318 169 KDLHFKMFDVGGQRS-ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW-FMDTSIILFLN 246 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~-~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~-~~~~piilv~N 246 (313)
+.+.+++||++|+.. ....+..++++++++|+|+|+++ ..++++...|+..+..... ..++|+++|+|
T Consensus 45 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 45 EQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD----------RSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred EEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 346799999999985 35567889999999999999998 7777777776666544322 35799999999
Q ss_pred cCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccC-cCHHHHHHHHHHHHH
Q psy8318 247 KNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDT-SNIQFVFDAVTDVII 298 (313)
Q Consensus 247 K~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~-~~v~~~f~~i~~~i~ 298 (313)
|+|+...+ +...+.. .+. ...++.++++||++| .||.++|+++++.+.
T Consensus 115 K~Dl~~~~~v~~~~~~-~~~---~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 115 KADLLHYRQVSTEEGE-KLA---SELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCchHHhCccCHHHHH-HHH---HHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 99986432 2222211 121 123467899999999 599999999998663
No 121
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=7.7e-21 Score=157.21 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=87.5
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+++ +.+.+||++|++.++..|..++..++++++|+|+++ ..+++....|+..+.. ....+.|++
T Consensus 48 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~-~~~~~~~~i 116 (169)
T cd04114 48 TVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQ-YANNKVITI 116 (169)
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hCCCCCeEE
Confidence 344443 678999999999999999999999999999999997 5666655566554422 122468999
Q ss_pred EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+++||+|+...+-........+.+. ....++++||++|.|+.++|+++.+.+
T Consensus 117 ~v~NK~D~~~~~~i~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 117 LVGNKIDLAERREVSQQRAEEFSDA---QDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEEECcccccccccCHHHHHHHHHH---cCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999865322222222333222 346789999999999999999998765
No 122
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=9.7e-21 Score=161.21 Aligned_cols=115 Identities=18% Similarity=0.111 Sum_probs=89.9
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++||++|+..++.+|..++.+++++|+|+|+++ ..++++...++..+.......++|++|++||+|+
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD----------PESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 688999999999999999999999999999999998 7788888888888876554467999999999998
Q ss_pred ccc-c-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQE-K-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~-k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
... . +......+.+. ......++++||++|.|+.++|+++.+.+.
T Consensus 117 ~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 117 LEEERQVPAKDALSTVE---LDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ccccccccHHHHHHHHH---hhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 652 1 11111111111 112356789999999999999999998765
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.84 E-value=1.8e-20 Score=161.59 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=91.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.+.+++||++|++.++..|..++.+++++|+|+|+++ ..++.+...|+..+... ..+.|+++++||+
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~ 123 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS----------RITYKNVPNWHRDIVRV--CENIPIVLVGNKV 123 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 45899999999999999999999999999999999998 77888777777776543 2568999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+.......... . +. ...++.++++||++|.|+++.|.++++.+...
T Consensus 124 Dl~~~~~~~~~~-~-~~---~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 124 DVKDRQVKARQI-T-FH---RKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred cCccccCCHHHH-H-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 986532221111 1 11 22456789999999999999999999988653
No 124
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.84 E-value=1.6e-20 Score=162.58 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=87.0
Q ss_pred cCceeeeEecCCCcccccccccccc-CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFE-GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~-~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK 247 (313)
....+.+||++|++ ......++. +++++|+|+|+++ ..+++.+..++..+.......++|+++|+||
T Consensus 48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td----------~~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTD----------RSSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 45789999999998 223345666 9999999999998 7888888888887766544467999999999
Q ss_pred CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+|+........+....+. ...++.+++|||+++.||.++|+++.+.+..
T Consensus 116 ~Dl~~~~~v~~~~~~~~a---~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 116 SDLARSREVSVQEGRACA---VVFDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred hhccccceecHHHHHHHH---HHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 998653221111111221 1235678999999999999999999998864
No 125
>KOG0395|consensus
Probab=99.84 E-value=7.1e-21 Score=160.96 Aligned_cols=137 Identities=20% Similarity=0.138 Sum_probs=111.4
Q ss_pred CCCccccccccceeeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHH
Q psy8318 142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221 (313)
Q Consensus 142 ~~y~Pt~~dil~~~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~ 221 (313)
++|.||.+|.++... .++-+...+.|+||+||+.+..+...|+.++++.+.|+++++ ..+|+
T Consensus 30 ~~y~ptied~y~k~~--------~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd----------~~SF~ 91 (196)
T KOG0395|consen 30 EDYDPTIEDSYRKEL--------TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD----------RSSFE 91 (196)
T ss_pred cccCCCccccceEEE--------EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC----------HHHHH
Confidence 569999998665433 222234778899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 222 ESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 222 e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
++..+++.+...+...+.|++|||||+|+...+....+-...+. ....+.+++|||+...||.++|..+.+.+..
T Consensus 92 ~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la---~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 92 EAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALA---RSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHH---HhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 99999999977777778999999999999875444333222222 3356779999999999999999999998865
No 126
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.83 E-value=2.8e-20 Score=154.75 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=82.2
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK 247 (313)
+.+.+.+|||+|++.++..|..++.+++++++|+|+++ ..+++.... |...+.. ...+.|+++++||
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~----------~~s~~~~~~~~~~~~~~--~~~~~piilv~nK 114 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH--FCPNVPIILVGNK 114 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--hCCCCCEEEEeeC
Confidence 34678999999999999999999999999999999998 566666654 3343332 2347899999999
Q ss_pred CCcccccccCCcccccC---------cCCCCC-CCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 248 NDLFQEKITKSPLTVCF---------PEYTDQ-KEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 248 ~Dl~~~k~~~~~l~~~f---------~~~~~~-~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+|+.........+...- ..+... ....+++|||++|.||.++|+++.+..
T Consensus 115 ~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 115 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 99865321111110000 000011 234689999999999999999998653
No 127
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.83 E-value=3.7e-20 Score=154.94 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=93.9
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+||++|++.++..|..++.+++++++|+|+++ ..+++++..++..+++.....+.|+++++||+|+
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 118 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS----------RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence 568899999999999999999999999999999998 7888999999999887655567899999999998
Q ss_pred ccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 251 FQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 251 ~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
...+. ...+..... ...++.++++||+++.|+.++|.|+.+.+....
T Consensus 119 ~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 119 HTQRQVSTEEGKELA----ESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred hhcCccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 64321 111221111 113467899999999999999999999887553
No 128
>KOG0088|consensus
Probab=99.83 E-value=6.4e-21 Score=149.66 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=97.4
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
....+.||||+||++|..+-+.||++++++++|+|++| ..+|+....|..++-. .....+.+++|+||+
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD----------rdSFqKVKnWV~Elr~-mlGnei~l~IVGNKi 128 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD----------RDSFQKVKNWVLELRT-MLGNEIELLIVGNKI 128 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc----------hHHHHHHHHHHHHHHH-HhCCeeEEEEecCcc
Confidence 34679999999999999999999999999999999999 8899999999888744 234568899999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
|+.+++....+-... |+..-+..+++|||+++.||.++|+.++..+++..
T Consensus 129 DLEeeR~Vt~qeAe~---YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 129 DLEEERQVTRQEAEA---YAESVGALYMETSAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred cHHHhhhhhHHHHHH---HHHhhchhheecccccccCHHHHHHHHHHHHHHHh
Confidence 998775443322222 21234567899999999999999999999998765
No 129
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=7.2e-20 Score=151.30 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=85.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.++++++||++|+..++..|..++.+++++++|+|+++ ..++++....|...+.... .+.|+++++||+
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~ 113 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDR----------PSTLERIRTKWLPLIRRLG-VKVPIILVGNKS 113 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEch
Confidence 45789999999999888889999999999999999998 6777776543333333222 378999999999
Q ss_pred CcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+....... ..+......+ . ....+++|||+++.|++++|+.+.+.++
T Consensus 114 Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 114 DLRDGSSQAGLEEEMLPIMNEF-R-EIETCVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred hcccccchhHHHHHHHHHHHHH-h-cccEEEEeccccccCHHHHHHHHHHHhc
Confidence 997643321 1111111112 1 1126889999999999999999988775
No 130
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.82 E-value=5.4e-20 Score=149.41 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=87.3
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
....+.+||++|+..+...|..++++++++|+|+|+++ ..++.+...++..+.... ..+.|+++++||+
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 115 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN----------RESFENLDKWLKELKEYA-PENIPIILVGNKI 115 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcc
Confidence 34789999999999999999999999999999999998 677787788777776542 2568999999999
Q ss_pred Ccc-cccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318 249 DLF-QEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 249 Dl~-~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
|+. ..........+.. ...+..++++||+++.|+.++|.++.
T Consensus 116 D~~~~~~~~~~~~~~~~----~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 116 DLEDQRQVSTEEAQQFA----KENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccccccccHHHHHHHH----HHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 986 2222223333322 12457899999999999999999986
No 131
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.82 E-value=8.9e-20 Score=150.90 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=82.5
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
..+.+++||++|++.+...+..+++.++++++|+|.++ ..++.+....|...+... ..+.|+++++||+
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 114 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS----------PSSFENVKTKWIPEIRHY-CPNVPIILVGTKI 114 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEEccH
Confidence 34679999999999888888888999999999999998 677777666444433322 2379999999999
Q ss_pred CcccccccC------------CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 249 DLFQEKITK------------SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 249 Dl~~~k~~~------------~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
|+....-.. .........+ ....++++||++|.|+.++|++|.+
T Consensus 115 Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 115 DLRDDENTLKKLEKGKEPITPEEGEKLAKEI---GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhhhchhhhhhcccCCCccCHHHHHHHHHHh---CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 987643211 0111111111 2238999999999999999999875
No 132
>PTZ00099 rab6; Provisional
Probab=99.82 E-value=6.2e-20 Score=153.20 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=93.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.+++.||||+|++.++.+|..||++++++|+|+|+++ ..++++...|+..+.... ..++|++||+||+
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~----------~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~ 95 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN----------RQSFENTTKWIQDILNER-GKDVIIALVGNKT 95 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCeEEEEEECc
Confidence 34889999999999999999999999999999999998 788998888888887643 3568999999999
Q ss_pred Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|+...+ +...+..... ...++.+++|||++|.||.++|+||.+.+..
T Consensus 96 DL~~~~~v~~~e~~~~~----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTYEEGMQKA----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCHHHHHHHH----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 986432 2222221111 2235568999999999999999999998865
No 133
>KOG0097|consensus
Probab=99.82 E-value=6.6e-20 Score=141.38 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=99.0
Q ss_pred eecceeE--EEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 157 KTTGIIE--THFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 157 ~T~g~~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
.|+|+.. .-+++ +.+++++||++||+++|.....||+++.+.+.|+|++. +........|+... .
T Consensus 42 htigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr----------rstynhlsswl~da-r 110 (215)
T KOG0097|consen 42 HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDA-R 110 (215)
T ss_pred cccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh----------hhhhhhHHHHHhhh-h
Confidence 4556432 23333 56899999999999999999999999999999999997 44444444444443 2
Q ss_pred CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+-...+..++|++||.|+..++-..-+..+.|.+- .++.+.++||++|+||++.|-...+.|.++
T Consensus 111 ~ltnpnt~i~lignkadle~qrdv~yeeak~faee---ngl~fle~saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 111 NLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE---NGLMFLEASAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred ccCCCceEEEEecchhhhhhcccCcHHHHHHHHhh---cCeEEEEecccccCcHHHHHHHHHHHHHHh
Confidence 23335788999999999987765555555556543 788999999999999999999988888754
No 134
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.81 E-value=1.4e-19 Score=147.84 Aligned_cols=114 Identities=21% Similarity=0.137 Sum_probs=90.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|+..+...+..++++++++++|+|+++ ..++.+...++..+.+.....++|+++++||+|
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITD----------RESFEEIKGYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence 4688999999999999999999999999999999998 778888888888887654435799999999999
Q ss_pred ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+...+ ........... ..+..++++||+++.|+.++|++|.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 116 LENERQVSKEEGKALAK----EWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred ccccceecHHHHHHHHH----HcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 87632 22222222222 1236789999999999999999998753
No 135
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.81 E-value=2.4e-19 Score=151.22 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=85.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~D 249 (313)
..+.+||++|++.++..+..++.+++++++|+|+++ ..++++... |+..+... ..++|++||+||+|
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~----------~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~D 116 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT----------PDSLENVRTKWIEEVRRY--CPNVPVILVGLKKD 116 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChh
Confidence 578999999999888888788899999999999998 667777654 55555332 24699999999999
Q ss_pred cccccccCCc----------ccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318 250 LFQEKITKSP----------LTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303 (313)
Q Consensus 250 l~~~k~~~~~----------l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~ 303 (313)
+..+....+. ....+. +..+ +.+++|||++|.||+++|+++.+.++...-+
T Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 117 LRQDAVAKEEYRTQRFVPIQQGKRVA---KEIGAKKYMECSALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred hhhCcccccccccCCcCCHHHHHHHH---HHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence 8543221111 011111 1123 4689999999999999999999888654433
No 136
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.79 E-value=4.6e-19 Score=150.85 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=64.4
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC---------------
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--------------- 234 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--------------- 234 (313)
.+.+++||++|++.++.+|..||++++++|+|+|+++ ..+++....|+.++.+..
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn----------~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~ 122 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN----------RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDS 122 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcC----------hHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 3689999999999999999999999999999999999 888888888888886531
Q ss_pred ---CCCCCcEEEEeecCCccccc
Q psy8318 235 ---WFMDTSIILFLNKNDLFQEK 254 (313)
Q Consensus 235 ---~~~~~piilv~NK~Dl~~~k 254 (313)
...++|++|||||.|+..++
T Consensus 123 ~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 123 EQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred cccCCCCceEEEEEECccchhhc
Confidence 12468999999999987653
No 137
>KOG0077|consensus
Probab=99.78 E-value=6.7e-20 Score=145.18 Aligned_cols=131 Identities=19% Similarity=0.291 Sum_probs=108.7
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
+||..-..+.+.+++.+++.+|.||+..-|+.|..||-.|++++|.||..| ..++.|++..++.++....
T Consensus 49 vPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d----------~er~~es~~eld~ll~~e~ 118 (193)
T KOG0077|consen 49 VPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYD----------QERFAESKKELDALLSDES 118 (193)
T ss_pred CCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhh----------HHHhHHHHHHHHHHHhHHH
Confidence 444455566778899999999999999999999999999999999999999 8999999999999999888
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCC-------------CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-------------DQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
..++|+++++||+|...+ .++.+++..+..++ ..+++..+.||...+.+--+.|.|+...+
T Consensus 119 la~vp~lilgnKId~p~a-~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 119 LATVPFLILGNKIDIPYA-ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred HhcCcceeecccccCCCc-ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 899999999999999875 34434333222111 34677889999999999999999987754
No 138
>PLN00023 GTP-binding protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=155.20 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=62.9
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC-----------CCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW-----------FMD 238 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~-----------~~~ 238 (313)
.+.++||||+||+.++.+|..||++++++|+|+|+++ ..++++...|++.+..... ..+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITd----------r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ 151 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ----------RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLP 151 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 3679999999999999999999999999999999998 7788888888888765321 235
Q ss_pred CcEEEEeecCCcccc
Q psy8318 239 TSIILFLNKNDLFQE 253 (313)
Q Consensus 239 ~piilv~NK~Dl~~~ 253 (313)
+|++||+||+|+..+
T Consensus 152 ipIILVGNK~DL~~~ 166 (334)
T PLN00023 152 VPYIVIGNKADIAPK 166 (334)
T ss_pred CcEEEEEECcccccc
Confidence 899999999998653
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.77 E-value=3.7e-18 Score=147.25 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=89.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+++.+|||+||+.++.+|..|+.+++++++|+|.++ ..++.+....+...+......+.|+++++||+|
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL----------RESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc----------chhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 5779999999999999999999999999999999998 567777776666555543335789999999999
Q ss_pred cccccccCC----------cc--cccCcCCCCCCCeEEEEeecc--cCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITKS----------PL--TVCFPEYTDQKEIYTHFTCAT--DTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~~----------~l--~~~f~~~~~~~~~~~~~tSA~--~~~~v~~~f~~i~~~i~~~ 300 (313)
++.+..... .+ ..............++++||+ ++.+|.++|..+...+...
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred cccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 987642111 11 011110101112237899999 9999999999999988643
No 140
>KOG0083|consensus
Probab=99.76 E-value=3e-19 Score=136.47 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=106.3
Q ss_pred eeecceeEE--EEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 156 VKTTGIIET--HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 156 ~~T~g~~~~--~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
+.|+|+... .++++ .+++++|||+||+++|+....||++++++++++|+++ ..+++....|+.++-
T Consensus 28 istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian----------kasfdn~~~wlsei~ 97 (192)
T KOG0083|consen 28 ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN----------KASFDNCQAWLSEIH 97 (192)
T ss_pred eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc----------chhHHHHHHHHHHHH
Confidence 577786543 44554 4899999999999999999999999999999999998 889999888888874
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
.- .-..+.+.+++||+|+..++..+.+-.+.+.+. .++++.+|||++|-||+-.|-.|.+.+++..+
T Consensus 98 ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~---y~ipfmetsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 98 EY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA---YGIPFMETSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred HH-HHhhHhHhhhccccccchhhccccchHHHHHHH---HCCCceeccccccccHhHHHHHHHHHHHHhcc
Confidence 32 223578899999999966555554444433322 47889999999999999999999999987654
No 141
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.76 E-value=9.2e-18 Score=138.56 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=81.4
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccc----------cccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIH----------CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~----------~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
|.++....+.+++..+++|||+|+.. +..|.. ....++++|+|+|.++.. ..++++...++
T Consensus 34 t~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~--------~~~~~~~~~~~ 104 (168)
T cd01897 34 TKSLFVGHFDYKYLRWQVIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDPSETC--------GYSLEEQLSLF 104 (168)
T ss_pred ccceeEEEEccCceEEEEEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeCCccc--------ccchHHHHHHH
Confidence 44555555566778999999999842 222211 112368999999998721 11345555666
Q ss_pred HHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 228 DSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
..+... ..+.|+++++||+|+..... ..+. ..+. ....+.+++|||++|.|++++|+|+.+.+
T Consensus 105 ~~l~~~--~~~~pvilv~NK~Dl~~~~~-~~~~-~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 105 EEIKPL--FKNKPVIVVLNKIDLLTFED-LSEI-EEEE---ELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred HHHHhh--cCcCCeEEEEEccccCchhh-HHHH-HHhh---hhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 665432 24789999999999865321 1111 1122 22456789999999999999999999876
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.75 E-value=6.6e-18 Score=138.50 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=80.3
Q ss_pred ceeEEEEEec-CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318 160 GIIETHFTFK-DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD 238 (313)
Q Consensus 160 g~~~~~~~~~-~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~ 238 (313)
+.....+.+. +..+++|||+|++.+......++.+++++++|+|+++ ....++...+..+ .. ...
T Consensus 39 ~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~-~~--~~~ 104 (164)
T cd04171 39 DLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEIL-EL--LGI 104 (164)
T ss_pred EeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHH-HH--hCC
Confidence 3333344554 7899999999999887777778899999999999975 1222333322221 11 122
Q ss_pred CcEEEEeecCCccccc-c--cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 239 TSIILFLNKNDLFQEK-I--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k-~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.|+++++||+|+..+. . ...++.+.+... ......++++||++|+|+.++|+++..
T Consensus 105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGT-FLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHHHHHhc-CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 4999999999986532 1 112333333221 113467899999999999999998754
No 143
>KOG4252|consensus
Probab=99.75 E-value=2.5e-19 Score=143.52 Aligned_cols=124 Identities=11% Similarity=0.165 Sum_probs=100.5
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.++++.+||++||+.+......||+++.+.++|++-+| ..+|+....|.+.+.+. ...+|.++|-||+
T Consensus 67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTD----------r~SFea~~~w~~kv~~e--~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTD----------RYSFEATLEWYNKVQKE--TERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHHHHhccchhHHHHHHHHhccccceEEEEeccc----------HHHHHHHHHHHHHHHHH--hccCCeEEeeccc
Confidence 56889999999999999999999999999999999999 89999999999998764 3579999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhhcCC
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI 307 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~~~~ 307 (313)
|+.+.........+.+. +..++..+.||++..-||.++|..+.+.+.+..-++++.
T Consensus 135 Dlveds~~~~~evE~la---k~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~ 190 (246)
T KOG4252|consen 135 DLVEDSQMDKGEVEGLA---KKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNA 190 (246)
T ss_pred hhhHhhhcchHHHHHHH---HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 98875433333222222 224556788999999999999999999887765444443
No 144
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=1.2e-17 Score=135.09 Aligned_cols=115 Identities=21% Similarity=0.179 Sum_probs=81.4
Q ss_pred EEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEE
Q psy8318 166 FTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSII 242 (313)
Q Consensus 166 ~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~pii 242 (313)
+..++ ..+.+||++|+..++.+|..++..++++++++|++.+ ...+.+.. .+...+... ...+.|++
T Consensus 43 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~---------v~~~~~~~~~~~~~~~~~-~~~~~p~i 112 (161)
T TIGR00231 43 IEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL---------VLDVEEILEKQTKEIIHH-AESNVPII 112 (161)
T ss_pred EEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee---------ehhhhhHhHHHHHHHHHh-cccCCcEE
Confidence 45555 7889999999999999999999999999999999873 13344444 233333221 11278999
Q ss_pred EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
+++||+|+.... ........+... ....++++||++|.|+.++|++|.
T Consensus 113 vv~nK~D~~~~~-~~~~~~~~~~~~---~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 113 LVGNKIDLRDAK-LKTHVAFLFAKL---NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEEcccCCcch-hhHHHHHHHhhc---cCCceEEeecCCCCCHHHHHHHhh
Confidence 999999986543 122223333333 334589999999999999999874
No 145
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.74 E-value=1.2e-17 Score=139.33 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=77.5
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+++.+++|||+|++.++..|..++++++++|+|+|+++ ..... ....+..+.. .++|+++++||+
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~~~~-~~~~~~~~~~----~~~~iiiv~NK~ 129 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQ----------GVEAQ-TLANFYLALE----NNLEIIPVINKI 129 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCC----------CccHh-hHHHHHHHHH----cCCCEEEEEECC
Confidence 46789999999999999999999999999999999986 22222 2222222322 357999999999
Q ss_pred Cccccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 249 Dl~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
|+...... ...+.+.+. . ....++++||++|+|+.++|+++.+.+
T Consensus 130 Dl~~~~~~~~~~~~~~~~~-~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 130 DLPSADPERVKQQIEDVLG-L---DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCCcCCHHHHHHHHHHHhC-C---CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 98542111 112222211 1 113478999999999999999998754
No 146
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.73 E-value=1.9e-17 Score=136.83 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=76.1
Q ss_pred EecCc-eeeeEecCCCc----ccccccccc---ccCCcEEEEEEecCCccccccccccc-ccHHHHHHHHHHHHhC-CCC
Q psy8318 167 TFKDL-HFKMFDVGGQR----SERKKWIHC---FEGVTAIIFCVALSGYDSVLAEDEEM-NRMIESMKLFDSICNS-KWF 236 (313)
Q Consensus 167 ~~~~~-~~~i~D~~Gq~----~~r~~w~~~---~~~~~~iifv~dls~~d~~~~e~~~~-~~l~e~~~~~~~~~~~-~~~ 236 (313)
.+++. .+.+|||+|+. ..+.++..+ ++.++++++|+|+++ . +.++....+.+.+... +..
T Consensus 43 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~~~~~~~~~~~~~l~~~~~~~ 112 (170)
T cd01898 43 RVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSG----------DDDPVEDYKTIRNELELYNPEL 112 (170)
T ss_pred EcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCC----------CCCHHHHHHHHHHHHHHhCccc
Confidence 34454 89999999973 222333333 446999999999997 4 3444444444444332 123
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
.++|+++|+||+|+.........+....... ....++++||+++.|+.++|+++.+.
T Consensus 113 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 113 LEKPRIVVLNKIDLLDEEELFELLKELLKEL---WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred cccccEEEEEchhcCCchhhHHHHHHHHhhC---CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 5789999999999865322222222222211 24568999999999999999998864
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.71 E-value=5.9e-17 Score=138.04 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=73.3
Q ss_pred eeeeEecCC-----------Ccccccccccccc----CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 172 HFKMFDVGG-----------QRSERKKWIHCFE----GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 172 ~~~i~D~~G-----------q~~~r~~w~~~~~----~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.+.+|||+| ++.++..|..|+. .++++++|+|.+++.+....-...........++..+ ..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~--- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL-RE--- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH-HH---
Confidence 689999999 6778888888874 3578889999876432110000001111122223322 22
Q ss_pred CCCcEEEEeecCCcccccc-cCCcccccCcC---CCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKI-TKSPLTVCFPE---YTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~-~~~~l~~~f~~---~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.++|+++|+||+|+..+.. ...++.+.+.. + ......+++|||++| |++++|+||.+.+.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPW-RQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccc-cccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 3689999999999865320 11122222221 1 111125789999999 99999999998764
No 148
>KOG0096|consensus
Probab=99.71 E-value=5.6e-17 Score=131.45 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=104.1
Q ss_pred eeeecceeEEEEEe----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 155 RVKTTGIIETHFTF----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 155 ~~~T~g~~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
+.+|+|+..+...+ +.+++..|||+||+.+..+...||-...|.|+++|++. ......+..|...+
T Consensus 39 y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVts----------r~t~~n~~rwhrd~ 108 (216)
T KOG0096|consen 39 YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTS----------RFTYKNVPRWHRDL 108 (216)
T ss_pred ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeee----------hhhhhcchHHHHHH
Confidence 45777876665544 34899999999999999999999999999999999998 56667777777777
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+.. ..++||++.|||.|+...+.....+.-. ..+++.++++||+..-|....|.|+++.+...
T Consensus 109 ~rv--~~NiPiv~cGNKvDi~~r~~k~k~v~~~-----rkknl~y~~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 109 VRV--RENIPIVLCGNKVDIKARKVKAKPVSFH-----RKKNLQYYEISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred HHH--hcCCCeeeeccceeccccccccccceee-----ecccceeEEeecccccccccchHHHhhhhcCC
Confidence 653 2469999999999998765455444322 45788999999999999999999999987643
No 149
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.70 E-value=1.6e-16 Score=135.69 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=72.8
Q ss_pred EEEecC-ceeeeEecCCCccc---------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 165 HFTFKD-LHFKMFDVGGQRSE---------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 165 ~~~~~~-~~~~i~D~~Gq~~~---------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
.+.+.+ ..+.+|||+|.... +..+ ..+.+++++++|+|+++ ........ .+..++...
T Consensus 82 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~----------~~~~~~~~-~~~~~l~~~ 149 (204)
T cd01878 82 RLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASD----------PDYEEQIE-TVEKVLKEL 149 (204)
T ss_pred EEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCC----------CChhhHHH-HHHHHHHHc
Confidence 344444 48999999998332 2222 23678999999999997 33333322 222222322
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
...+.|+++|+||+|+..+.... .. + ......++++||+++.|+.+++++|.+.
T Consensus 150 ~~~~~~viiV~NK~Dl~~~~~~~----~~---~-~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 150 GAEDIPMILVLNKIDLLDDEELE----ER---L-EAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CcCCCCEEEEEEccccCChHHHH----HH---h-hcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 33568999999999986542211 11 1 2234568999999999999999998764
No 150
>KOG0393|consensus
Probab=99.70 E-value=2.7e-17 Score=136.70 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=99.4
Q ss_pred CCCccccccccceeeeecceeEEEE-EecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccH
Q psy8318 142 PNYIPTQQDVLRTRVKTTGIIETHF-TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRM 220 (313)
Q Consensus 142 ~~y~Pt~~dil~~~~~T~g~~~~~~-~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l 220 (313)
.+|+||.-|-+.+.. .+ +-+.+.+.+|||+||+.+.++|+-.|.++|.+|.||++.+ +.++
T Consensus 31 ~~yvPTVFdnys~~v--------~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~----------p~S~ 92 (198)
T KOG0393|consen 31 EEYVPTVFDNYSANV--------TVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVS----------PESF 92 (198)
T ss_pred ccccCeEEccceEEE--------EecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCC----------hhhH
Confidence 679999876554432 12 1234779999999999999999999999999999999999 8888
Q ss_pred HHHHH-HHHHHHhCCCCCCCcEEEEeecCCcccccccCCccc----------c--cCcCCCCCCC-eEEEEeecccCcCH
Q psy8318 221 IESMK-LFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLT----------V--CFPEYTDQKE-IYTHFTCATDTSNI 286 (313)
Q Consensus 221 ~e~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~----------~--~f~~~~~~~~-~~~~~tSA~~~~~v 286 (313)
++... |+-++.. . ..++|++|||+|.||.........+. + .++ +..+ ..+++|||++..|+
T Consensus 93 ~nv~~kW~pEi~~-~-cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA---~~iga~~y~EcSa~tq~~v 167 (198)
T KOG0393|consen 93 ENVKSKWIPEIKH-H-CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA---KEIGAVKYLECSALTQKGV 167 (198)
T ss_pred HHHHhhhhHHHHh-h-CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH---HHhCcceeeeehhhhhCCc
Confidence 88554 5555533 2 36899999999999975321111110 0 011 1122 57899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8318 287 QFVFDAVTDVIIKA 300 (313)
Q Consensus 287 ~~~f~~i~~~i~~~ 300 (313)
.++|+......+..
T Consensus 168 ~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 168 KEVFDEAIRAALRP 181 (198)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999888754
No 151
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.69 E-value=9.2e-17 Score=137.20 Aligned_cols=118 Identities=17% Similarity=0.235 Sum_probs=84.3
Q ss_pred cCceeeeEecCCCccccccccccccCC-cEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEEEe
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGV-TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIILFL 245 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~-~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piilv~ 245 (313)
.+..+.+||++||..++..|..+++++ +++|||+|+++. .+++.++..++..++.... ..++|++|++
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~---------~~~~~~~~~~l~~il~~~~~~~~~~pvliv~ 116 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF---------QKNLKDVAEFLYDILTDLEKVKNKIPVLIAC 116 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc---------hhHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence 357899999999999999999999998 999999999982 2677788777777665432 2579999999
Q ss_pred ecCCccccccc---CCcccc------------------------cC-----cC--CC-CCCCeEEEEeecccCc-CHHHH
Q psy8318 246 NKNDLFQEKIT---KSPLTV------------------------CF-----PE--YT-DQKEIYTHFTCATDTS-NIQFV 289 (313)
Q Consensus 246 NK~Dl~~~k~~---~~~l~~------------------------~f-----~~--~~-~~~~~~~~~tSA~~~~-~v~~~ 289 (313)
||+|++.+.-. ...+.. .+ .. |. ...++.+.++|++.+. ++..+
T Consensus 117 NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~ 196 (203)
T cd04105 117 NKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGW 196 (203)
T ss_pred cchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhH
Confidence 99998753110 000000 00 00 10 1235677889998876 69999
Q ss_pred HHHHHH
Q psy8318 290 FDAVTD 295 (313)
Q Consensus 290 f~~i~~ 295 (313)
.+||.+
T Consensus 197 ~~w~~~ 202 (203)
T cd04105 197 EEWIDE 202 (203)
T ss_pred HHHHhh
Confidence 999865
No 152
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.69 E-value=2.3e-16 Score=130.05 Aligned_cols=114 Identities=16% Similarity=0.046 Sum_probs=78.5
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+..+.+|||+|+..++..|..++..++++++|+|.++.+ ..+....+..+.. .+.|+++++||+
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~ 112 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKI 112 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEce
Confidence 3688999999999999999999999999999999999732 1222223332221 357999999999
Q ss_pred Cccccccc--CCcccccCcC-C-CCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT--KSPLTVCFPE-Y-TDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 249 Dl~~~k~~--~~~l~~~f~~-~-~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
|+...... ...+...... . .....+.++++||++|.|+.++++++.+..
T Consensus 113 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 113 DKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 98643111 0111111000 0 012346789999999999999999998754
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.68 E-value=2.9e-16 Score=133.16 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=81.6
Q ss_pred EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
...+..++..+++|||+|++.++..|..++++++++++|+|+++ ........++..... .++|++
T Consensus 57 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~-----------~~~~~~~~~~~~~~~----~~~p~i 121 (194)
T cd01891 57 NTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALE----LGLKPI 121 (194)
T ss_pred eeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCCEE
Confidence 34556678899999999999999999999999999999999986 122233333444332 368999
Q ss_pred EEeecCCccccccc--CCcccccCcCCC---CCCCeEEEEeecccCcCHH------HHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEKIT--KSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQ------FVFDAVTDVII 298 (313)
Q Consensus 243 lv~NK~Dl~~~k~~--~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~------~~f~~i~~~i~ 298 (313)
+++||+|+..+... ..++.+.+..+. ...++.++++||++|.|+. +...++.+.|.
T Consensus 122 iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~ 188 (194)
T cd01891 122 VVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTII 188 (194)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHH
Confidence 99999998643221 122222222111 1235678999999998874 33555555553
No 154
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=3.6e-16 Score=142.72 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=82.4
Q ss_pred EEe-cCceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCC
Q psy8318 166 FTF-KDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWF 236 (313)
Q Consensus 166 ~~~-~~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~ 236 (313)
+.+ ++.++.+||++|... ....|..+++.++++|+|+|+++ ..++++...|.+++... +.+
T Consensus 200 v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~----------~~s~e~~~~~~~EL~~~~~~L 269 (335)
T PRK12299 200 VRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEA----------VDPVEDYKTIRNELEKYSPEL 269 (335)
T ss_pred EEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCC----------CCCHHHHHHHHHHHHHhhhhc
Confidence 444 457899999999732 33456667788999999999997 33455544555555332 334
Q ss_pred CCCcEEEEeecCCcccccccCC-cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKS-PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~-~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+.|++||+||+|+..+..... ...... ...++.++++||++++||.+++++|.+.+..
T Consensus 270 ~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 270 ADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred ccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999865321111 111111 1123578999999999999999999988754
No 155
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=1.1e-16 Score=128.53 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=62.7
Q ss_pred eeEecCCCc-----cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 174 KMFDVGGQR-----SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 174 ~i~D~~Gq~-----~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+|||+|+. .++.... .+++++++|+|+|+++- .++.. ..+. ... ..|+++++||+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~----------~s~~~-~~~~-~~~------~~p~ilv~NK~ 98 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDP----------ESRFP-PGFA-SIF------VKPVIGLVTKI 98 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCC----------CcCCC-hhHH-Hhc------cCCeEEEEEee
Confidence 689999983 2333322 47899999999999983 33222 1222 221 23999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
|+...........+..... ....++++||++|.|+.++|+++.
T Consensus 99 Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 99 DLAEADVDIERAKELLETA---GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ccCCcccCHHHHHHHHHHc---CCCcEEEEecCCCCCHHHHHHHHh
Confidence 9864321111212222211 123678999999999999999874
No 156
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=4.5e-16 Score=124.44 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=83.4
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+..+.+||++|+......|..++..++++++|+|+++ ...+.....++..........+.|+++++||+|
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD----------RESFENVKEWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 5789999999999988889889999999999999998 555565555533333334456799999999999
Q ss_pred cccccccCCcc-cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318 250 LFQEKITKSPL-TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 250 l~~~k~~~~~l-~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
+.......... ...+. ....+.++++||.++.|+.++++||.
T Consensus 114 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 114 LPEERVVSEEELAEQLA---KELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccccchHHHHHHHHHH---hhcCCcEEEEecCCCCChHHHHHHHh
Confidence 86542221111 11122 22457899999999999999999985
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.65 E-value=1.3e-15 Score=127.80 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=83.3
Q ss_pred EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL 243 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil 243 (313)
..+...+..+.+||++|+..++..|..++..++++++|+|.++. . .......+..... .+.|+++
T Consensus 55 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~-~~~~~~~~~~~~~----~~~~i~i 119 (189)
T cd00881 55 ATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG----------V-QPQTREHLRIARE----GGLPIIV 119 (189)
T ss_pred EEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC----------C-cHHHHHHHHHHHH----CCCCeEE
Confidence 34455678999999999999999999999999999999998862 1 1222233333322 4689999
Q ss_pred EeecCCcccc-ccc--CCcccccCcCCC----------CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 244 FLNKNDLFQE-KIT--KSPLTVCFPEYT----------DQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 244 v~NK~Dl~~~-k~~--~~~l~~~f~~~~----------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
++||+|+..+ ... ...+.+.+.... ......++++||++|.|+.++++++.+.+
T Consensus 120 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 120 AINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred EEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 9999998752 111 112222222210 12356789999999999999999998875
No 158
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=1.3e-15 Score=123.56 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=98.7
Q ss_pred eeeecceeEEEEEecC-ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 155 RVKTTGIIETHFTFKD-LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
+..|+++......+.+ ..+.+++|+||++++.+|..+.+++.++|+++|.+. +..+ ++..+++-+-..
T Consensus 51 r~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~----------~~~~-~a~~ii~f~~~~ 119 (187)
T COG2229 51 RPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----------PITF-HAEEIIDFLTSR 119 (187)
T ss_pred cceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCC----------Ccch-HHHHHHHHHhhc
Confidence 4577888888777765 999999999999999999999999999999999998 5555 555555544322
Q ss_pred CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 234 KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
. .+|++|+.||+|++.+ .+.+.+.+++..- ..++..+.++|.+++++.+.++.+...
T Consensus 120 ~---~ip~vVa~NK~DL~~a-~ppe~i~e~l~~~--~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 120 N---PIPVVVAINKQDLFDA-LPPEKIREALKLE--LLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred c---CCCEEEEeeccccCCC-CCHHHHHHHHHhc--cCCCceeeeecccchhHHHHHHHHHhh
Confidence 1 1899999999999986 5666666665422 136789999999999999988877654
No 159
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.64 E-value=7.1e-16 Score=127.96 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=78.4
Q ss_pred EEEec-CceeeeEecCCCc----cccccc---cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC-
Q psy8318 165 HFTFK-DLHFKMFDVGGQR----SERKKW---IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW- 235 (313)
Q Consensus 165 ~~~~~-~~~~~i~D~~Gq~----~~r~~w---~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~- 235 (313)
.+.++ +..+.+|||+|+. ..+.++ ..++.+++++++|+|+++.+.. ...+.+.+...+...+.....
T Consensus 37 ~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 112 (176)
T cd01881 37 VVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLE 112 (176)
T ss_pred EEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhh
Confidence 34556 7889999999973 223333 3457889999999999972100 000344554445555543221
Q ss_pred -----CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 236 -----FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 236 -----~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
..+.|+++++||+|+............... ......++++||+++.|+.++++++...
T Consensus 113 ~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 113 TILGLLTAKPVIYVLNKIDLDDAEELEEELVRELA---LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHh---cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 246899999999998653221111000111 2234568999999999999999998764
No 160
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.64 E-value=1e-15 Score=139.69 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=82.2
Q ss_pred eeecceeEEEEEecC-ceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 156 VKTTGIIETHFTFKD-LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
.|++|.. .+.+ .++++||++|+.. ....|..+++.+++++||+|+++.+. .+.+++...+.
T Consensus 193 ~p~ig~v----~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l~ 261 (329)
T TIGR02729 193 VPNLGVV----RVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEIIR 261 (329)
T ss_pred CCEEEEE----EeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHHH
Confidence 4555643 3444 8899999999742 23445556778999999999997310 12333333333
Q ss_pred HHHHh-CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 228 DSICN-SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 228 ~~~~~-~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+++.. .+.+.+.|++||+||+|+..+.. ...+.+.+.+ ..++.++++||++++|++++++++.+.+
T Consensus 262 ~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~---~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 262 NELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKK---ALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHH---HcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 33322 23345789999999999865421 1222222221 1245689999999999999999998754
No 161
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.64 E-value=5.2e-16 Score=120.82 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=54.0
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC-CCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK-WFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~-~~~~~piilv~NK~ 248 (313)
...+.+||++|++.+...|...+.+++++|+|+|+++ ..++.++.+++..+.+.. ...++|++||+||.
T Consensus 49 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~----------~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~ 118 (119)
T PF08477_consen 49 RQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSD----------PESLEYLSQLLKWLKNIRKRDKNIPIILVGNKS 118 (119)
T ss_dssp EEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCG----------HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-T
T ss_pred ceEEEEEecCccceecccccchhhcCcEEEEEEcCCC----------hHHHHHHHHHHHHHHHHHccCCCCCEEEEEecc
Confidence 3449999999999888888888999999999999998 677777655533332211 23459999999999
Q ss_pred C
Q psy8318 249 D 249 (313)
Q Consensus 249 D 249 (313)
|
T Consensus 119 D 119 (119)
T PF08477_consen 119 D 119 (119)
T ss_dssp C
T ss_pred C
Confidence 8
No 162
>PRK15494 era GTPase Era; Provisional
Probab=99.63 E-value=1.1e-15 Score=140.29 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=75.6
Q ss_pred ecceeEEEEEecCceeeeEecCCCcc-cccccc-------ccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRS-ERKKWI-------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFD 228 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~-~r~~w~-------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~ 228 (313)
|.+.....++.++.++.+|||+|+.. +..+.. .++.++|++|||+|.++ ++.+.. .++.
T Consensus 87 Tr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~------------s~~~~~~~il~ 154 (339)
T PRK15494 87 TRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK------------SFDDITHNILD 154 (339)
T ss_pred ccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC------------CCCHHHHHHHH
Confidence 33434445566788999999999843 222211 24689999999999764 222222 2333
Q ss_pred HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.+ .. .+.|.++|+||+|+..+. ..++.+.+.+. .....++++||++|.|++++|++|.+.+.
T Consensus 155 ~l-~~---~~~p~IlViNKiDl~~~~--~~~~~~~l~~~--~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 155 KL-RS---LNIVPIFLLNKIDIESKY--LNDIKAFLTEN--HPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred HH-Hh---cCCCEEEEEEhhcCcccc--HHHHHHHHHhc--CCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 33 21 235778899999986431 12222222211 12256899999999999999999987653
No 163
>KOG3883|consensus
Probab=99.63 E-value=4.5e-15 Score=116.28 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=99.9
Q ss_pred CCCccccccccceeeeec-ceeEEEEEecCceeeeEecCCCccc-cccccccccCCcEEEEEEecCCccccccccccccc
Q psy8318 142 PNYIPTQQDVLRTRVKTT-GIIETHFTFKDLHFKMFDVGGQRSE-RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNR 219 (313)
Q Consensus 142 ~~y~Pt~~dil~~~~~T~-g~~~~~~~~~~~~~~i~D~~Gq~~~-r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~ 219 (313)
.+|.||.+|++.....|- |. .-.+.++||+|-... ..+-.+||+-+|+.++|+|..+ ..+
T Consensus 38 ~e~~pTiEDiY~~svet~rga--------rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d----------~eS 99 (198)
T KOG3883|consen 38 TELHPTIEDIYVASVETDRGA--------REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMD----------PES 99 (198)
T ss_pred CccccchhhheeEeeecCCCh--------hheEEEeecccccCchhhhhHhHhccCceEEEEecCCC----------HHH
Confidence 468899999987765442 21 246889999996655 6677889999999999999998 455
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 220 MIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 220 l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|+..-.+-..+-..+.-..+||++++||+|+.+..-...+..+.+. ..-.+..++++|.+...+.+.|..++..+-+
T Consensus 100 f~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa---~rEkvkl~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 100 FQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWA---KREKVKLWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred HHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHH---hhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence 5544333333333444567999999999998654333344555444 3356788999999999999999999987754
No 164
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.63 E-value=2.6e-15 Score=122.36 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=80.5
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccc------ccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERK------KWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS 229 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 229 (313)
|.......+.+.+..+.+|||+|+..+.. .+..++. +++++|+|+|.++ ... ...++..
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~---~~~~~~~ 96 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN----------LER---NLYLTLQ 96 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc----------chh---HHHHHHH
Confidence 33444455666677899999999987664 3666675 9999999999986 222 1233333
Q ss_pred HHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 230 ICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 230 ~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+.. .++|+++++||+|+........... .+. ...++.++++||.++.|+.++|+++.+.
T Consensus 97 ~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~-~~~---~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 97 LLE----LGLPVVVALNMIDEAEKRGIKIDLD-KLS---ELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred HHH----cCCCEEEEEehhhhcccccchhhHH-HHH---HhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 332 2589999999999865422222221 111 1234678999999999999999998775
No 165
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.62 E-value=8e-15 Score=119.01 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=73.5
Q ss_pred EEEecCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.+...+.++.+|||+|...... .-..++..++++++|+|+++ .....+.. .+.. .
T Consensus 43 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~~~~~~~-~~~~------~ 105 (157)
T cd04164 43 SIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR----------GLDEEDLE-ILEL------P 105 (157)
T ss_pred EEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCHHHHH-HHHh------h
Confidence 4455677899999999754321 11235678999999999997 33333322 2221 3
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+.|+++++||+|+...... .. ......++++||+++.|+.+++++|.+.+
T Consensus 106 ~~~~vi~v~nK~D~~~~~~~---------~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 106 ADKPIIVVLNKSDLLPDSEL---------LS-LLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cCCCEEEEEEchhcCCcccc---------cc-ccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46899999999998754222 11 22345789999999999999999988754
No 166
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.61 E-value=3.6e-15 Score=126.21 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=71.2
Q ss_pred cCceeeeEecCCCcccccccccc---ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHC---FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL 245 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~---~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~ 245 (313)
++..+.+|||+|+..+ +..+ ...++++++|+|.++. ..... ...+. +... .+.|+++++
T Consensus 66 ~~~~~~i~DtpG~~~~---~~~~~~~~~~~d~vi~VvD~~~~----------~~~~~-~~~~~-~~~~---~~~~~iiv~ 127 (192)
T cd01889 66 ENLQITLVDCPGHASL---IRTIIGGAQIIDLMLLVVDATKG----------IQTQT-AECLV-IGEI---LCKKLIVVL 127 (192)
T ss_pred cCceEEEEECCCcHHH---HHHHHHHHhhCCEEEEEEECCCC----------ccHHH-HHHHH-HHHH---cCCCEEEEE
Confidence 3688999999999643 4444 3467899999999862 11111 11111 1111 256999999
Q ss_pred ecCCccccccc---CCcccc----cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 246 NKNDLFQEKIT---KSPLTV----CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 246 NK~Dl~~~k~~---~~~l~~----~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
||+|+...... ...+.+ .+.++ ...++.++++||++|+|+.++++++.++|.
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 128 NKIDLIPEEERERKIEKMKKKLQKTLEKT-RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHHHHHhc-CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 99998642111 112222 22222 124567899999999999999999998875
No 167
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.59 E-value=4e-15 Score=127.15 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=76.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.||||+|++.+.+.+......++++++|+|+++ .....++...+..+... ...|+++++||+|
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~----------~~~~~~t~~~l~~~~~~---~~~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE----------PCPQPQTSEHLAALEIM---GLKHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC----------CCCCcchHHHHHHHHHc---CCCcEEEEEEchh
Confidence 3689999999999988888888889999999999986 11111122222222111 2257999999999
Q ss_pred ccccc-cc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEK-IT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k-~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..+. .. ...+.+.+..+ ....+.++++||++|+|+.++|+++.+.+
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~-~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGT-IAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhcc-ccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 86521 11 12233333322 12345789999999999999999998754
No 168
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.59 E-value=2e-14 Score=136.00 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=79.5
Q ss_pred eeEEEEEecCceeeeEecCCCccccccc--------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 161 IIETHFTFKDLHFKMFDVGGQRSERKKW--------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 161 ~~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
+....+.+++..+++|||+|++.....+ ..++++++++|+|+|.++ ..+.++. ++..+..
T Consensus 241 ~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~----------~~s~~~~--~l~~~~~ 308 (442)
T TIGR00450 241 VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ----------PLTKDDF--LIIDLNK 308 (442)
T ss_pred EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCChhHH--HHHHHhh
Confidence 3445667788899999999997654332 357899999999999987 3333332 4444321
Q ss_pred CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.++|+++|+||+|+... .... +. ...+..++.+||++ .||.++|+.+.+.+.+.
T Consensus 309 ----~~~piIlV~NK~Dl~~~--~~~~----~~---~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 309 ----SKKPFILVLNKIDLKIN--SLEF----FV---SSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred ----CCCCEEEEEECccCCCc--chhh----hh---hhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 36799999999998643 1111 11 11234578899997 69999999999988654
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=8.1e-15 Score=140.55 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=77.1
Q ss_pred EEEEEecCceeeeEecCCCcc--------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRS--------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
...+.+++..+.+|||+|++. ++..+..+++.+|++|||+|.++ ..+.. ...+..++..
T Consensus 78 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~----------~~s~~--~~~i~~~l~~- 144 (472)
T PRK03003 78 SYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV----------GATAT--DEAVARVLRR- 144 (472)
T ss_pred EEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCHH--HHHHHHHHHH-
Confidence 334566778899999999863 34456778999999999999997 22211 1122222222
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.++|+++|+||+|+.... ....+.+. . ..+ ..+++||++|.|+.++|+++.+.+..
T Consensus 145 --~~~piilV~NK~Dl~~~~---~~~~~~~~-~--g~~-~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 145 --SGKPVILAANKVDDERGE---ADAAALWS-L--GLG-EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred --cCCCEEEEEECccCCccc---hhhHHHHh-c--CCC-CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 468999999999986421 11111111 1 111 24689999999999999999988754
No 170
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=8.5e-15 Score=138.88 Aligned_cols=136 Identities=11% Similarity=0.062 Sum_probs=84.0
Q ss_pred ecceeEEEEEecCceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
|+..+...+.+++.++.+||++|... ....+..+++.|+++|+|+|+++.+.. ......+......+...
T Consensus 193 Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~y 269 (500)
T PRK12296 193 TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAAY 269 (500)
T ss_pred cccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHHh
Confidence 33444445666788999999999632 112234457889999999999863100 00112233333333333
Q ss_pred HhC-------CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 231 CNS-------KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 231 ~~~-------~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
... ..+.+.|++||+||+|+....-....+...+. ..++.++++||++++|+.+++.+|.+.+...
T Consensus 270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~----~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 270 APALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE----ARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred hhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH----HcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 211 03456899999999998754211112222221 2356799999999999999999999887553
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=1.4e-14 Score=137.55 Aligned_cols=118 Identities=16% Similarity=0.256 Sum_probs=80.3
Q ss_pred EEEEecCceeeeEecCCCccccccc-----------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERKKW-----------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~~w-----------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
..+..++..+.+|||+|++...+.+ ..+++.+|++|+|+|.++ .-+. ....++..+..
T Consensus 213 ~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~----------~~~~-~~~~~~~~~~~ 281 (429)
T TIGR03594 213 IPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE----------GITE-QDLRIAGLILE 281 (429)
T ss_pred EEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CccH-HHHHHHHHHHH
Confidence 3455567789999999987665543 236789999999999986 2222 22344444433
Q ss_pred CCCCCCCcEEEEeecCCcccccccC----CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKITK----SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~~----~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+.|+++++||+|+....... ..+...++.. ..+.++++||++|.|+.++|+++.+....
T Consensus 282 ----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 282 ----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL---DFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred ----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC---CCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 358999999999986211111 1233333322 34678999999999999999999886643
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.58 E-value=2.6e-14 Score=117.81 Aligned_cols=113 Identities=17% Similarity=0.318 Sum_probs=73.4
Q ss_pred EEEecCceeeeEecCCCccccc-----------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERK-----------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~-----------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
.+..++..+.+||++|...... ....++.+++++++|+|.++ ... .....++..+..
T Consensus 44 ~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~~~~- 111 (174)
T cd01895 44 PFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLILE- 111 (174)
T ss_pred EEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCC----------Ccc-hhHHHHHHHHHh-
Confidence 3445667789999999754311 11234678999999999886 222 222333333322
Q ss_pred CCCCCCcEEEEeecCCccccc-cc----CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 234 KWFMDTSIILFLNKNDLFQEK-IT----KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~~k-~~----~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.+.|+++++||+|+.... .. ...+.+.++.. ....++++||+++.|+.++++++.+
T Consensus 112 ---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 112 ---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL---DYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred ---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccc---cCCceEEEeccCCCCHHHHHHHHHH
Confidence 357999999999986542 11 11233333322 2357899999999999999999875
No 173
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.58 E-value=1.3e-14 Score=133.60 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=75.4
Q ss_pred ecceeEEEEEe-cCceeeeEecCCCc---------cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 158 TTGIIETHFTF-KDLHFKMFDVGGQR---------SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 158 T~g~~~~~~~~-~~~~~~i~D~~Gq~---------~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
|.......+.+ ++..+.+|||+|.. .+++.+ ..+.++|++|+|+|.++ +....+. ..+
T Consensus 223 T~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~----------~~~~~~~-~~~ 290 (351)
T TIGR03156 223 TLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASD----------PDREEQI-EAV 290 (351)
T ss_pred ccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCC----------CchHHHH-HHH
Confidence 33444455556 56899999999982 233322 24788999999999997 3333322 222
Q ss_pred HHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 228 DSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
..++......+.|+++|+||+|+.... .+..... ....++++||++|.|+.+++++|.+.
T Consensus 291 ~~~L~~l~~~~~piIlV~NK~Dl~~~~----~v~~~~~-----~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 291 EKVLEELGAEDIPQLLVYNKIDLLDEP----RIERLEE-----GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHHHHHhccCCCCEEEEEEeecCCChH----hHHHHHh-----CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 233332223468999999999986421 1111100 11246899999999999999998764
No 174
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.57 E-value=2.3e-14 Score=136.20 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=78.9
Q ss_pred ceeEEEEEecCceeeeEecCCCcccccc--------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERKK--------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
.+....+.+++..+.+|||+|++..... ...++.++|++++|+|.++ ....++ ..++..
T Consensus 252 d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~----------~~s~~~-~~~l~~-- 318 (449)
T PRK05291 252 DVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE----------PLTEED-DEILEE-- 318 (449)
T ss_pred ccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC----------CCChhH-HHHHHh--
Confidence 3445566677889999999998653321 2246889999999999987 333332 233332
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
..+.|+++|+||+|+....... . . ....++++||++|.|++++++++.+.+..
T Consensus 319 ----~~~~piiiV~NK~DL~~~~~~~----~----~---~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 319 ----LKDKPVIVVLNKADLTGEIDLE----E----E---NGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ----cCCCCcEEEEEhhhccccchhh----h----c---cCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 3468999999999986532111 1 1 23457899999999999999999988753
No 175
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=9.4e-15 Score=118.69 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=74.4
Q ss_pred EEEEecCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
......+..+.+|||+|+..... .+..++++++++++|+|..+. .... ...+ ..++..
T Consensus 38 ~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~-~~~~-~~~~~~-- 103 (157)
T cd01894 38 GEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG----------LTPA-DEEI-AKYLRK-- 103 (157)
T ss_pred EEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc----------CCcc-HHHH-HHHHHh--
Confidence 34455678899999999987554 445678899999999998751 1111 1122 222222
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+.|+++++||+|+...... ...+.. .+. .++++||+++.|+.++|+++.+.+
T Consensus 104 -~~~piiiv~nK~D~~~~~~~----~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 104 -SKKPVILVVNKVDNIKEEDE----AAEFYS----LGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred -cCCCEEEEEECcccCChHHH----HHHHHh----cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 24899999999998764222 111111 122 468999999999999999998753
No 176
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.57 E-value=1.6e-14 Score=141.26 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=77.6
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++|||+|+..+...|..+++.++++|+|+|+++ ....+ +...+..... .+.|+++|+||+|+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~----------g~~~q-t~~~~~~~~~----~~ipiIiViNKiDl 134 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQ----------GIEAQ-TLANVYLALE----NDLEIIPVINKIDL 134 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCC----------CCCHh-HHHHHHHHHH----cCCCEEEEEECcCC
Confidence 789999999999999999999999999999999987 22222 2222222222 35799999999998
Q ss_pred cccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
...... ..++.+.+. + ....++++||++|.||.++|++|.+.+.
T Consensus 135 ~~~~~~~~~~el~~~lg-~---~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 135 PSADPERVKKEIEEVIG-L---DASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred CccCHHHHHHHHHHHhC-C---CcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 643111 112222221 1 1124789999999999999999988764
No 177
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3.8e-14 Score=132.80 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=77.9
Q ss_pred EEec-CceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh-CCCC
Q psy8318 166 FTFK-DLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN-SKWF 236 (313)
Q Consensus 166 ~~~~-~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~-~~~~ 236 (313)
+.+. +.++.+||++|... ....|..+++.++++|+|+|+++.+ ..+.+++...+.+++.. .+.+
T Consensus 200 v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~L 272 (424)
T PRK12297 200 VETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPRL 272 (424)
T ss_pred EEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchhc
Confidence 3444 68899999999742 1223444567799999999998631 01333333333333322 2334
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.+.|++||+||+|+.... ..+......+ ...++++||++++|+.++++++.+.+...
T Consensus 273 ~~kP~IVV~NK~DL~~~~---e~l~~l~~~l----~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 273 LERPQIVVANKMDLPEAE---ENLEEFKEKL----GPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred cCCcEEEEEeCCCCcCCH---HHHHHHHHHh----CCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 578999999999984321 1111111111 25688999999999999999999877543
No 178
>KOG0090|consensus
Probab=99.56 E-value=6.6e-15 Score=121.94 Aligned_cols=125 Identities=15% Similarity=0.242 Sum_probs=89.6
Q ss_pred eEEEEEecCceeeeEecCCCcccccccccccc---CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CC
Q psy8318 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFE---GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WF 236 (313)
Q Consensus 162 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~---~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~ 236 (313)
++..+.+++-..++.|.+|+.+.|.+-..||. .+.+|+||+|++.|+ ....++-+++-.++.+. .-
T Consensus 73 n~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~---------k~vrdvaefLydil~~~~~~~ 143 (238)
T KOG0090|consen 73 NEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL---------KNVRDVAEFLYDILLDSRVKK 143 (238)
T ss_pred ceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc---------hhhHHHHHHHHHHHHhhcccc
Confidence 44455667777899999999999998888887 799999999999874 55666667666665543 34
Q ss_pred CCCcEEEEeecCCcccccccC-------Ccc---------------cccCcCCC-------------CCCCeEEEEeecc
Q psy8318 237 MDTSIILFLNKNDLFQEKITK-------SPL---------------TVCFPEYT-------------DQKEIYTHFTCAT 281 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~-------~~l---------------~~~f~~~~-------------~~~~~~~~~tSA~ 281 (313)
.++|+++.+||+|++-++-.+ .++ ++.-.++. .+..+.+.++|++
T Consensus 144 ~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~ 223 (238)
T KOG0090|consen 144 NKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAK 223 (238)
T ss_pred CCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccC
Confidence 679999999999997643110 011 00000000 2346778889999
Q ss_pred cCcCHHHHHHHHHHH
Q psy8318 282 DTSNIQFVFDAVTDV 296 (313)
Q Consensus 282 ~~~~v~~~f~~i~~~ 296 (313)
++ ++.+.-+|+.+.
T Consensus 224 ~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 224 TG-EIDQWESWIREA 237 (238)
T ss_pred cC-ChHHHHHHHHHh
Confidence 98 999999998864
No 179
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=2.7e-14 Score=136.94 Aligned_cols=118 Identities=11% Similarity=0.117 Sum_probs=77.9
Q ss_pred EEEEecCceeeeEecCCCccc----------ccc-ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 164 THFTFKDLHFKMFDVGGQRSE----------RKK-WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~----------r~~-w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
..+.+++..+.+|||+|++.. ... ...++++++++|+|+|+++ ..+..+ ..++..+..
T Consensus 252 ~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~----------~~s~~~-~~~~~~~~~ 320 (472)
T PRK03003 252 SLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE----------PISEQD-QRVLSMVIE 320 (472)
T ss_pred EEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC----------CCCHHH-HHHHHHHHH
Confidence 345567778899999997432 111 1235689999999999997 333333 344544433
Q ss_pred CCCCCCCcEEEEeecCCcccccc---cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKI---TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~---~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.++|++||+||+|+..+.. ...++...+... ....+++|||++|.||.++|+.+.+.+..
T Consensus 321 ----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~---~~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 321 ----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQV---PWAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred ----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccC---CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999864211 111222222211 23467899999999999999999887643
No 180
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.55 E-value=4e-14 Score=137.98 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=77.9
Q ss_pred EEEecCc-eeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318 165 HFTFKDL-HFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL 243 (313)
Q Consensus 165 ~~~~~~~-~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil 243 (313)
.+.+.+. .+.+|||+||+.+..+|..++..+|++|+|+|.++ ....++...+.... ..++|+++
T Consensus 128 ~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d-----------gv~~qT~e~i~~~~----~~~vPiIV 192 (587)
T TIGR00487 128 HVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD-----------GVMPQTIEAISHAK----AANVPIIV 192 (587)
T ss_pred EEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC-----------CCCHhHHHHHHHHH----HcCCCEEE
Confidence 3444433 89999999999999999999999999999999885 22233333333221 24689999
Q ss_pred EeecCCcccccccCCcccccCcCCC-----CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 244 FLNKNDLFQEKITKSPLTVCFPEYT-----DQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 244 v~NK~Dl~~~k~~~~~l~~~f~~~~-----~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
++||+|+.... ...+...+.++. -.....++++||++|+|+.++|+++..
T Consensus 193 viNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 193 AINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECcccccCC--HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 99999986421 111111111110 012356899999999999999999864
No 181
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.55 E-value=2.5e-14 Score=127.63 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=71.0
Q ss_pred cCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 169 KDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
++.++.+|||+|...... .+..+++++|+++||+|.++ ..+.. ..+++.+ .. .+.|
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~----------~~~~~--~~i~~~l-~~---~~~p 109 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQ----------WNGDG--EFVLTKL-QN---LKRP 109 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCchH--HHHHHHH-Hh---cCCC
Confidence 567899999999754321 23456789999999999987 22322 2222222 22 3589
Q ss_pred EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+++|+||+|+................. ....++++||++|.|++++++++.+.+.
T Consensus 110 ~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 110 VVLTRNKLDNKFKDKLLPLIDKYAILE---DFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred EEEEEECeeCCCHHHHHHHHHHHHhhc---CCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 999999999853211111111111101 1125899999999999999999987653
No 182
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.54 E-value=1.4e-13 Score=116.22 Aligned_cols=125 Identities=16% Similarity=0.222 Sum_probs=86.5
Q ss_pred ecceeEEEEE--ecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 158 TTGIIETHFT--FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 158 T~g~~~~~~~--~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
|+......+. ..+..++++|+||+..+.+........+|++|+|+|..+. -.....+.+..+..
T Consensus 55 ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-----------~~~~~~~~l~~~~~--- 120 (188)
T PF00009_consen 55 TIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-----------IQPQTEEHLKILRE--- 120 (188)
T ss_dssp SSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-----------STHHHHHHHHHHHH---
T ss_pred ccccccccccccccccceeecccccccceeecccceecccccceeeeecccc-----------cccccccccccccc---
Confidence 3344444555 6789999999999998888888888999999999999861 22334444444432
Q ss_pred CCCCcEEEEeecCCcccccccC--CcccccC-cCCC-CC-CCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITK--SPLTVCF-PEYT-DQ-KEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~--~~l~~~f-~~~~-~~-~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+.|+++++||+|+...+... .++...| ..+. .. ..+.++++||.+|.|+.++++.|.+.+
T Consensus 121 -~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 121 -LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp -TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred -cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 467899999999987543221 2233222 2221 11 357899999999999999999988754
No 183
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.52 E-value=1.4e-13 Score=120.30 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=63.5
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
+.-|+......+.+++.++.+|||+|+..+...|..+++.++++++|+|.++ .- ......+++.+..
T Consensus 48 rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~----------g~-~~~~~~~~~~~~~-- 114 (237)
T cd04168 48 RGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVE----------GV-QAQTRILWRLLRK-- 114 (237)
T ss_pred CCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCC----------CC-CHHHHHHHHHHHH--
Confidence 3445555666778889999999999999999999999999999999999986 11 1233444444322
Q ss_pred CCCCCcEEEEeecCCccc
Q psy8318 235 WFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~ 252 (313)
.+.|+++|+||+|+..
T Consensus 115 --~~~P~iivvNK~D~~~ 130 (237)
T cd04168 115 --LNIPTIIFVNKIDRAG 130 (237)
T ss_pred --cCCCEEEEEECccccC
Confidence 3689999999999874
No 184
>KOG1673|consensus
Probab=99.52 E-value=2.6e-14 Score=112.26 Aligned_cols=130 Identities=18% Similarity=0.299 Sum_probs=94.8
Q ss_pred eeccee--EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 157 KTTGII--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 157 ~T~g~~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
.|.|++ ..++.+++ +.+.+||+|||++++..-+....++-+|+|++|++. +..+.....|+.+...
T Consensus 51 q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~----------r~TLnSi~~WY~QAr~ 120 (205)
T KOG1673|consen 51 QTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR----------RSTLNSIKEWYRQARG 120 (205)
T ss_pred HHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc----------hHHHHHHHHHHHHHhc
Confidence 344543 33444443 778999999999999999888899999999999998 7888888888888744
Q ss_pred CCCCCCCcEEEEeecCCcccccccCC---cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKITKS---PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~~~---~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
... .-+| +++|+|.|.+-. ++.+ .+...-..|++-.+...++||+....||+.+|+-+...+.+
T Consensus 121 ~Nk-tAiP-ilvGTKyD~fi~-lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 121 LNK-TAIP-ILVGTKYDLFID-LPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred cCC-ccce-EEeccchHhhhc-CCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhC
Confidence 221 2345 566999998763 3332 22222223333346678999999999999999999888764
No 185
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.51 E-value=1e-13 Score=137.26 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=78.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+..+.||||+|++.+...|..++..+|++|+|+|.++- ....+.+.+..+. ..++|+++++||+|
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k----~~~iPiIVViNKiD 358 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQ----AANVPIIVAINKID 358 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHH----hcCceEEEEEECCC
Confidence 58899999999999999999999999999999998862 1122223333221 24689999999999
Q ss_pred ccccccc--CCccccc--CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKIT--KSPLTVC--FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~--~~~l~~~--f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+...... ...+..+ +++- ....+.++++||++|.|+.++|+++....
T Consensus 359 l~~~~~e~v~~eL~~~~ll~e~-~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 359 KANANTERIKQQLAKYNLIPEK-WGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccccCHHHHHHHHHHhccchHh-hCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 8653211 0111111 1110 01236789999999999999999987753
No 186
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.51 E-value=4.7e-14 Score=121.92 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=77.8
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.-|+......+++++.++.+|||+|+..+...+......++++|+|+|.++-+ .+. ......+....+... . .
T Consensus 62 g~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~---~~~-~~~~~~~~~~~~~~~-~--~ 134 (219)
T cd01883 62 GVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGE---FEA-GFEKGGQTREHALLA-R--T 134 (219)
T ss_pred ccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCc---ccc-ccccccchHHHHHHH-H--H
Confidence 34445555677788999999999999888777777788899999999998721 000 000111122222211 1 1
Q ss_pred CCCCcEEEEeecCCccccc---c----cCCcccccCcCCC-CCCCeEEEEeecccCcCHH
Q psy8318 236 FMDTSIILFLNKNDLFQEK---I----TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQ 287 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k---~----~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~ 287 (313)
....|+++++||+|+.... . ....+...+..+. ....+.++++||++|+|+.
T Consensus 135 ~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 135 LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2236899999999987310 0 0112222333221 2245789999999999986
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.51 E-value=1.2e-13 Score=137.84 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=81.0
Q ss_pred EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF 244 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv 244 (313)
.+.+.+..++||||+|++.|..+|...+..+|++|+|+|.++ ....++...+.... ..++|++|+
T Consensus 331 ~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiIVv 395 (787)
T PRK05306 331 QVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPIIVA 395 (787)
T ss_pred EEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEEEE
Confidence 455567889999999999999999999999999999999886 22233333333221 246899999
Q ss_pred eecCCccccccc--CCcccc--cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 245 LNKNDLFQEKIT--KSPLTV--CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 245 ~NK~Dl~~~k~~--~~~l~~--~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+||+|+...... ..++.. .+++. ....+.++++||++|.||.++|++|...
T Consensus 396 iNKiDl~~a~~e~V~~eL~~~~~~~e~-~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 396 INKIDKPGANPDRVKQELSEYGLVPEE-WGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EECccccccCHHHHHHHHHHhcccHHH-hCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 999998653110 111111 12211 1123678999999999999999998753
No 188
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.50 E-value=8e-14 Score=114.34 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred eEecCCCccccccccc----cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 175 MFDVGGQRSERKKWIH----CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 175 i~D~~Gq~~~r~~w~~----~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+|||+|+...+..|.. .+.+++++|+|+|.++-+ +... .++..+ ..++|+++++||+|+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~----------s~~~--~~~~~~-----~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPE----------SRLP--AGLLDI-----GVSKRQIAVISKTDM 103 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcc----------cccC--HHHHhc-----cCCCCeEEEEEcccc
Confidence 6999998554444433 368999999999999732 1111 122222 135799999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.... ...+.+.+.+. ....+++++||++|+|+.++|+++.+.+.+.
T Consensus 104 ~~~~--~~~~~~~~~~~--~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 104 PDAD--VAATRKLLLET--GFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred Cccc--HHHHHHHHHHc--CCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 5421 12222222211 1124789999999999999999998877543
No 189
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.50 E-value=1.2e-13 Score=135.44 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=78.5
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
++.+++|||+|+..+...|..+++.++++|+|+|.++- ... .....+..... .+.|+++|+||+|
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g----------v~~-qt~~~~~~~~~----~~lpiIvViNKiD 137 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG----------VEA-QTLANVYLALE----NDLEIIPVLNKID 137 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC----------CCH-HHHHHHHHHHH----CCCCEEEEEECCC
Confidence 57899999999999999999999999999999999872 121 12222322222 3579999999999
Q ss_pred ccccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 250 LFQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 250 l~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+..+... ..++.+.+. + ....++++||++|.|+.+++++|.+.+.
T Consensus 138 l~~a~~~~v~~ei~~~lg-~---~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 138 LPAADPERVKQEIEDVIG-I---DASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcccHHHHHHHHHHHhC-C---CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 8653211 112222211 1 1124789999999999999999988764
No 190
>PRK11058 GTPase HflX; Provisional
Probab=99.50 E-value=2.4e-13 Score=128.06 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=73.0
Q ss_pred EEEecC-ceeeeEecCCCccc--ccccc------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 165 HFTFKD-LHFKMFDVGGQRSE--RKKWI------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 165 ~~~~~~-~~~~i~D~~Gq~~~--r~~w~------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.+...+ ..+.+|||+|..+. ..+|. ..+.+++++|+|+|.++ +.. .+....+..++..-.
T Consensus 238 ~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~----------~~~-~e~l~~v~~iL~el~ 306 (426)
T PRK11058 238 RIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAAD----------VRV-QENIEAVNTVLEEID 306 (426)
T ss_pred EEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCC----------ccH-HHHHHHHHHHHHHhc
Confidence 444444 37889999998432 22333 34688999999999997 333 233322333333222
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
..+.|+++|+||+|+...... .+... . .+. .++++||++|.|+.++++++.+.+..
T Consensus 307 ~~~~pvIiV~NKiDL~~~~~~--~~~~~--~----~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 307 AHEIPTLLVMNKIDMLDDFEP--RIDRD--E----ENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred cCCCCEEEEEEcccCCCchhH--HHHHH--h----cCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 246899999999998642110 11000 0 111 24779999999999999999988753
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.50 E-value=1.1e-13 Score=135.22 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=85.3
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~ 237 (313)
|+.+....++.++..+.+||++|++.+.+.+..++.++|++++|+|.++- ...++.+.+.. +.. .
T Consensus 37 Tid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G-----------~~~qT~ehl~i-l~~---l 101 (581)
T TIGR00475 37 TIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG-----------VMTQTGEHLAV-LDL---L 101 (581)
T ss_pred eEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CcHHHHHHHHH-HHH---c
Confidence 33333445666778999999999999998888899999999999999861 11222222221 221 2
Q ss_pred CCc-EEEEeecCCccccc-c--cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 238 DTS-IILFLNKNDLFQEK-I--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 238 ~~p-iilv~NK~Dl~~~k-~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
++| +++++||+|+..+. + ....+.+.+..+....++.++++||++|+|+.++++++.+.+..
T Consensus 102 gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 102 GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 466 99999999986532 1 11223332222211125678999999999999999998776543
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=1.1e-13 Score=131.69 Aligned_cols=111 Identities=19% Similarity=0.140 Sum_probs=73.9
Q ss_pred eEEEEEecCceeeeEecCCCcc--------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 162 IETHFTFKDLHFKMFDVGGQRS--------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 162 ~~~~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
....+.+.+..+.+|||+|+.. .+..+..++.++|++|||+|.++ ..... ...+..++..
T Consensus 40 ~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~----------~~~~~--~~~~~~~l~~ 107 (435)
T PRK00093 40 IYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRA----------GLTPA--DEEIAKILRK 107 (435)
T ss_pred eEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCHH--HHHHHHHHHH
Confidence 3345566778999999999976 34445667899999999999986 11111 1112222222
Q ss_pred CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHH
Q psy8318 234 KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.+.|+++++||+|.... .....+. .. .++ .++++||++|.|+.++|+++.+
T Consensus 108 ---~~~piilv~NK~D~~~~---~~~~~~~-~~----lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 108 ---SNKPVILVVNKVDGPDE---EADAYEF-YS----LGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ---cCCcEEEEEECccCccc---hhhHHHH-Hh----cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 26899999999996431 1111111 11 122 3689999999999999999987
No 193
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=1.6e-13 Score=112.08 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=70.5
Q ss_pred cCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 169 KDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
++..+.+||++|...... .+..++..++++++|+|.++. ..+....+...+.. .+.|
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~------------~~~~~~~~~~~~~~---~~~~ 113 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP------------IGEGDEFILELLKK---SKTP 113 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc------------cCchHHHHHHHHHH---hCCC
Confidence 457899999999754332 234457889999999999972 11112222222221 2579
Q ss_pred EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+++++||+|+.............+.. ......++.+||+++.++.+++++|.+.
T Consensus 114 ~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 114 VILVLNKIDLVKDKEDLLPLLEKLKE--LGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEEEEEchhccccHHHHHHHHHHHHh--ccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 99999999986321111111111111 1123467899999999999999998764
No 194
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.48 E-value=2.1e-13 Score=110.15 Aligned_cols=111 Identities=17% Similarity=0.082 Sum_probs=73.9
Q ss_pred CceeeeEecCCCccccc-------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 170 DLHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~-------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
...+.+||++|+..... .+..++..++++++|+|.++. ....... ++.... ..+.|++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~----------~~~~~~~-~~~~~~----~~~~~~i 108 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR----------ADEEEEK-LLELLR----ERGKPVL 108 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC----------CCHHHHH-HHHHHH----hcCCeEE
Confidence 67899999999876543 344578999999999999983 2222222 222221 2468999
Q ss_pred EEeecCCcccccccCCccc-ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEKITKSPLT-VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 243 lv~NK~Dl~~~k~~~~~l~-~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+++||+|+....-...... ...... ......++++||+++.|+.++++++.+.
T Consensus 109 vv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 109 LVLNKIDLLPEEEEEELLELRLLILL-LLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred EEEEccccCChhhHHHHHHHHHhhcc-cccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 9999999765321111100 000011 2245678999999999999999998864
No 195
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.47 E-value=1.7e-13 Score=116.02 Aligned_cols=110 Identities=8% Similarity=0.094 Sum_probs=67.2
Q ss_pred CceeeeEecCCCc----------cccccccccccC---CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 170 DLHFKMFDVGGQR----------SERKKWIHCFEG---VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 170 ~~~~~i~D~~Gq~----------~~r~~w~~~~~~---~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
+..+.+|||+|.. .+......++.. ++++++|+|.++ .....+ ..+...+..
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~--~~i~~~l~~--- 133 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH----------PLKELD--LQMIEWLKE--- 133 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCC----------CCCHHH--HHHHHHHHH---
Confidence 3689999999952 223333445554 467888888775 111111 111222221
Q ss_pred CCCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.+.|+++++||+|+....... ..+...+.. ....++++||+++.|+.++++++.+.+.
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF----GDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh----cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 357999999999986532111 122233221 1456789999999999999999987653
No 196
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.45 E-value=4.9e-13 Score=130.71 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=92.2
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
..|+......+.+++.++++|||+|+..+...+..+++.+|++++|+|.++ .....+..++..+..
T Consensus 49 GiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~--- 114 (594)
T TIGR01394 49 GITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALE--- 114 (594)
T ss_pred CccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHH---
Confidence 345555556778899999999999999999999999999999999999985 233445556665544
Q ss_pred CCCCcEEEEeecCCccccccc--CCcccccCcCCC---CCCCeEEEEeecccCc----------CHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKIT--KSPLTVCFPEYT---DQKEIYTHFTCATDTS----------NIQFVFDAVTDVII 298 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~--~~~l~~~f~~~~---~~~~~~~~~tSA~~~~----------~v~~~f~~i~~~i~ 298 (313)
.++|+++|+||+|+..+... ..++.+.|..+. ....+.++++||++|. |+..+|+.+.+.+-
T Consensus 115 -~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 115 -LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred -CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 35799999999998654221 123333332221 1124578999999995 78899988887653
No 197
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.45 E-value=2.6e-13 Score=116.42 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=72.7
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
-|+......+..++.++.+|||+|++.+...+...+..++++|+|+|.++- ........+. ++.. .
T Consensus 63 ~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~-----------~~~~~~~~~~-~~~~--~ 128 (208)
T cd04166 63 ITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG-----------VLEQTRRHSY-ILSL--L 128 (208)
T ss_pred cCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC-----------ccHhHHHHHH-HHHH--c
Confidence 344444456667888999999999988777777788999999999998861 1111222221 2221 1
Q ss_pred CCCcEEEEeecCCccccccc-----CCcccccCcCCCCCCCeEEEEeecccCcCHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKIT-----KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~-----~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~ 288 (313)
...++++|+||+|+....-. ..++...+..+ ......++++||++|.|+.+
T Consensus 129 ~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 129 GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKL-GIEDITFIPISALDGDNVVS 184 (208)
T ss_pred CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHc-CCCCceEEEEeCCCCCCCcc
Confidence 22467889999998642100 11222222222 11235689999999999864
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.45 E-value=2.5e-13 Score=128.76 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=76.0
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
..|+......+..++..+.+||++||+.+.+.....+..++++|+|+|.++-+. +. .....+... ++..
T Consensus 70 g~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~---~~--~~~t~~~~~----~~~~-- 138 (426)
T TIGR00483 70 GVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF---EV--QPQTREHAF----LART-- 138 (426)
T ss_pred CceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc---cc--CCchHHHHH----HHHH--
Confidence 344445556677788999999999998776555556788999999999997210 00 011111111 1111
Q ss_pred CCCCcEEEEeecCCcccc-c--c--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQE-K--I--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVF 290 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~-k--~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f 290 (313)
....|++|++||+|+.+. + . ...++.+.+..+. ....+.++++||++|.|+.+.+
T Consensus 139 ~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 139 LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 123589999999998631 1 0 1122333332221 1234789999999999998644
No 199
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.44 E-value=4.4e-13 Score=127.33 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=76.4
Q ss_pred EEEEEecCceeeeEecCCC--------ccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 163 ETHFTFKDLHFKMFDVGGQ--------RSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq--------~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
...+.+++..+.+|||||. +.++..+..+++.+++++||+|.++ .-. ..... +..++..
T Consensus 39 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~----------~~~-~~d~~-i~~~l~~- 105 (429)
T TIGR03594 39 YGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE----------GLT-PEDEE-IAKWLRK- 105 (429)
T ss_pred EEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCC-HHHHH-HHHHHHH-
Confidence 3455667888999999996 3344556777899999999999885 111 11111 2222222
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.+.|+++|+||+|+........+ +. ..++ .++++||++|.|+.++++++.+.+-
T Consensus 106 --~~~piilVvNK~D~~~~~~~~~~----~~----~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 106 --SGKPVILVANKIDGKKEDAVAAE----FY----SLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred --hCCCEEEEEECccCCcccccHHH----HH----hcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 35899999999998653211111 11 1233 5789999999999999999988764
No 200
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=7e-13 Score=126.19 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=77.4
Q ss_pred EEEecCceeeeEecCCCccccccc-----------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERKKW-----------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~~w-----------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
.+..++..+.+|||+|.....+.+ ..+++.+|++|+|+|.++ ... .....++..+..
T Consensus 215 ~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~----------~~~-~~~~~i~~~~~~- 282 (435)
T PRK00093 215 PFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLALE- 282 (435)
T ss_pred EEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC----------CCC-HHHHHHHHHHHH-
Confidence 345577889999999976543332 235778999999999986 222 222334444332
Q ss_pred CCCCCCcEEEEeecCCcccccc---cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 234 KWFMDTSIILFLNKNDLFQEKI---TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~~k~---~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.+.|+++++||+|+..+.. ....+...++.. ..+.++++||++|.|+.++|+++.+...
T Consensus 283 ---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~---~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 283 ---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFL---DYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred ---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccc---cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3579999999999864221 111223333322 3467899999999999999999887654
No 201
>KOG4423|consensus
Probab=99.44 E-value=1.5e-13 Score=111.23 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=90.2
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEeec
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLNK 247 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~NK 247 (313)
+++++||++||+++..+..-||+++++...|+|++. ...++.+..|.+.+... +.....|++++.||
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~----------s~tfe~~skwkqdldsk~qLpng~Pv~~vllank 144 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR----------SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK 144 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc----------cccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence 678999999999999999999999999999999998 66777777777776543 33456789999999
Q ss_pred CCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 248 NDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
||....-... -...|..|.+++++ ..++|||+...|+.|+-+.+.+.++-+
T Consensus 145 Cd~e~~a~~~--~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 145 CDQEKSAKNE--ATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred hccChHhhhh--hHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhh
Confidence 9976432222 11223333233443 578999999999999999999988754
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.44 E-value=3.9e-13 Score=126.54 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=76.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+..+++||++||+.+.+.|......+|++++|+|.++-. ......+.+..+ .. ....|+++++||+|
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l~~l----~~--~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHLMAL----EI--IGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHHHHH----HH--cCCCeEEEEEEccc
Confidence 468999999999999988888888999999999998610 011222222222 11 12357999999999
Q ss_pred ccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+....-. ..++.+.+..+ ....+.++++||++|+|+.+++++|...+
T Consensus 146 l~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 146 LVSKEKALENYEEIKEFVKGT-VAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred cCCHHHHHHHHHHHHhhhhhc-ccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 8642111 12222222221 11356789999999999999999998754
No 203
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.43 E-value=3.7e-13 Score=109.11 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=77.9
Q ss_pred eecceeEEEEEecCceeeeEecCCCccc------cccccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHH
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSE------RKKWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~------r~~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~ 228 (313)
.|+-.....+.+++..+.++|++|..+. .+.+..++ +..|++|.|+|.+. ++..+.+..
T Consensus 33 ~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~-------------l~r~l~l~~ 99 (156)
T PF02421_consen 33 TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN-------------LERNLYLTL 99 (156)
T ss_dssp SSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG-------------HHHHHHHHH
T ss_pred CCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC-------------HHHHHHHHH
Confidence 3444556677788899999999995332 34445554 68999999999874 566677777
Q ss_pred HHHhCCCCCCCcEEEEeecCCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHH
Q psy8318 229 SICNSKWFMDTSIILFLNKNDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAV 293 (313)
Q Consensus 229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i 293 (313)
++.. .+.|+++++||+|...++-. ...+++. .+++++++||++++|++++++.|
T Consensus 100 ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~-------Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 100 QLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSER-------LGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHH-------HTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHH-------hCCCEEEEEeCCCcCHHHHHhhC
Confidence 7765 35899999999998764321 1233332 46789999999999999998764
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.43 E-value=1e-12 Score=128.34 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=86.2
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~ 237 (313)
|+......+.+++.++++|||+|+..+...|..+++.++++|+|+|.++ .........+..... .
T Consensus 55 Ti~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~-----------G~~~qt~~~l~~a~~----~ 119 (607)
T PRK10218 55 TILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFD-----------GPMPQTRFVTKKAFA----Y 119 (607)
T ss_pred EEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEeccc-----------CccHHHHHHHHHHHH----c
Confidence 3334445667789999999999999999999999999999999999986 122233344444333 3
Q ss_pred CCcEEEEeecCCcccccccC--CcccccCcCCC---CCCCeEEEEeecccCc----------CHHHHHHHHHHHH
Q psy8318 238 DTSIILFLNKNDLFQEKITK--SPLTVCFPEYT---DQKEIYTHFTCATDTS----------NIQFVFDAVTDVI 297 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~k~~~--~~l~~~f~~~~---~~~~~~~~~tSA~~~~----------~v~~~f~~i~~~i 297 (313)
+.|+++++||+|+..+.... .++.+.|.... ....++++++||++|. ++..+++.|.+.+
T Consensus 120 gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 120 GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 67899999999987542211 23333332211 1134678999999998 4777777666654
No 205
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.43 E-value=1.4e-12 Score=113.66 Aligned_cols=126 Identities=10% Similarity=0.109 Sum_probs=75.3
Q ss_pred eeEEEEEecCceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCCccccc------c-------c-------
Q psy8318 161 IIETHFTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSGYDSVL------A-------E------- 213 (313)
Q Consensus 161 ~~~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~~d~~~------~-------e------- 213 (313)
.....+.+++..+++||++|+.... +.+..++++++++++|+|+++-++.. . +
T Consensus 37 ~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~ 116 (233)
T cd01896 37 CVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNIT 116 (233)
T ss_pred ceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEE
Confidence 3344556688999999999985432 23456789999999999998632100 0 0
Q ss_pred --ccc-------------cccHHHHHHHHHHH---------------------HhCCCCCCCcEEEEeecCCcccccccC
Q psy8318 214 --DEE-------------MNRMIESMKLFDSI---------------------CNSKWFMDTSIILFLNKNDLFQEKITK 257 (313)
Q Consensus 214 --~~~-------------~~~l~e~~~~~~~~---------------------~~~~~~~~~piilv~NK~Dl~~~k~~~ 257 (313)
... .-..+....++.+. +.. ....+|+++++||+|+....
T Consensus 117 ~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~-~~~y~p~iiV~NK~Dl~~~~--- 192 (233)
T cd01896 117 IKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEG-NRVYIPCLYVYNKIDLISIE--- 192 (233)
T ss_pred EEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhC-CceEeeEEEEEECccCCCHH---
Confidence 000 00112222222221 110 11346999999999975421
Q ss_pred CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 258 SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 258 ~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+.. .+. ....++++||+++.|++++|+.+.+.+
T Consensus 193 -~~~-~~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 193 -ELD-LLA-----RQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred -HHH-HHh-----cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 111 121 112478899999999999999888754
No 206
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.43 E-value=3.2e-13 Score=111.91 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=55.7
Q ss_pred cCceeeeEecCCCccccccccc---cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEE
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIH---CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIIL 243 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~---~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piil 243 (313)
.+..+.+.|++|+.+.|..... +..++.+||||+|.+.+ ...+.++-+++-.++.... ...+|++|
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLI 117 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQKNKPPILI 117 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCTT--EEEE
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhccCCCCEEE
Confidence 3467899999999998875544 47889999999999853 4567777777777766533 35689999
Q ss_pred EeecCCcccc
Q psy8318 244 FLNKNDLFQE 253 (313)
Q Consensus 244 v~NK~Dl~~~ 253 (313)
++||+|++.+
T Consensus 118 acNK~Dl~~A 127 (181)
T PF09439_consen 118 ACNKQDLFTA 127 (181)
T ss_dssp EEE-TTSTT-
T ss_pred EEeCcccccc
Confidence 9999999875
No 207
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.43 E-value=5e-13 Score=115.42 Aligned_cols=131 Identities=15% Similarity=0.274 Sum_probs=81.0
Q ss_pred eeecceeEEEEEe-cCceeeeEecCCCccccc-----cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318 156 VKTTGIIETHFTF-KDLHFKMFDVGGQRSERK-----KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS 229 (313)
Q Consensus 156 ~~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~r~-----~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 229 (313)
.||+.+....+.. +...+++||+|||..+-. .....|+++.++|||+|+.+ ....+++..|..
T Consensus 32 ~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs-----------~~~~~~l~~~~~ 100 (232)
T PF04670_consen 32 EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQS-----------DDYDEDLAYLSD 100 (232)
T ss_dssp ----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT------------STCHHHHHHHHH
T ss_pred CCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccc-----------ccHHHHHHHHHH
Confidence 4677777666664 568999999999975543 34667999999999999994 234555555555
Q ss_pred HHhC--CCCCCCcEEEEeecCCcccccccC-------CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 230 ICNS--KWFMDTSIILFLNKNDLFQEKITK-------SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 230 ~~~~--~~~~~~piilv~NK~Dl~~~k~~~-------~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+.. ....++.+-++.+|+|+..+.-.. ..+.+...+. ....+.+|.||.-| ..+.++|..|...+..
T Consensus 101 ~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~-~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 101 CIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDL-GIEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp HHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHT-T-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred HHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhc-cccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 4432 223578999999999986432111 1222222222 11258899999998 5888888888877663
No 208
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.43 E-value=7.3e-13 Score=125.63 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=75.8
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
+.-|+......++.++..+.+|||+|++.+.+........+|++|+|+|.++-. .. .....+...+ +..
T Consensus 68 rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~-----~~-~~~~~~~~~~----~~~- 136 (425)
T PRK12317 68 RGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAG-----GV-MPQTREHVFL----ART- 136 (425)
T ss_pred cCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCC-----CC-CcchHHHHHH----HHH-
Confidence 345566666677788899999999999776544444567899999999998510 00 1111122221 111
Q ss_pred CCCCCcEEEEeecCCccccc---c--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEK---I--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVF 290 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k---~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f 290 (313)
....|+++++||+|+.... . ...++.+.+..+. ....+.++++||++|+|+.+.+
T Consensus 137 -~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 137 -LGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred -cCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1224799999999986411 0 1123333332221 1124679999999999998744
No 209
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.42 E-value=1.5e-12 Score=115.58 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=61.8
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
+..|+......+++++.++++|||+|+..+...+..+++.++++|+|+|.++- - ......+++.. ..
T Consensus 55 rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g----------~-~~~~~~i~~~~-~~- 121 (267)
T cd04169 55 RGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG----------V-EPQTRKLFEVC-RL- 121 (267)
T ss_pred CCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC----------c-cHHHHHHHHHH-Hh-
Confidence 44555666678888999999999999998887677788999999999999861 1 11222333322 22
Q ss_pred CCCCCcEEEEeecCCcccc
Q psy8318 235 WFMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~ 253 (313)
.++|+++++||+|+..+
T Consensus 122 --~~~P~iivvNK~D~~~a 138 (267)
T cd04169 122 --RGIPIITFINKLDREGR 138 (267)
T ss_pred --cCCCEEEEEECCccCCC
Confidence 36899999999998653
No 210
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.42 E-value=1.2e-12 Score=131.29 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=77.3
Q ss_pred EEEEecCceeeeEecCCCcc-ccccc----------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 164 THFTFKDLHFKMFDVGGQRS-ERKKW----------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~-~r~~w----------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
..+.+++..+.+|||+|... .+..| ..+++.++++++|+|.++ ..+..+ ..++..+..
T Consensus 491 ~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~----------~~s~~~-~~i~~~~~~ 559 (712)
T PRK09518 491 EIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ----------PISEQD-LKVMSMAVD 559 (712)
T ss_pred eEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC----------CCCHHH-HHHHHHHHH
Confidence 34566778899999999742 22222 234688999999999997 333332 344554433
Q ss_pred CCCCCCCcEEEEeecCCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.++|++||+||+|+..+... ...+...++.. .....+++||++|.|+.++|+.+.+....
T Consensus 560 ----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~---~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 560 ----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRV---TWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCC---CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36899999999998643110 11122222211 22356889999999999999999887654
No 211
>PRK00089 era GTPase Era; Reviewed
Probab=99.42 E-value=9.6e-13 Score=118.71 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=72.1
Q ss_pred cCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 169 KDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
++.++.+|||+|....+. .+...+.++|+++||+|.++ .+.+....+...+.. .+.|
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~------------~~~~~~~~i~~~l~~---~~~p 115 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADE------------KIGPGDEFILEKLKK---VKTP 115 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCC------------CCChhHHHHHHHHhh---cCCC
Confidence 457899999999754322 23345789999999999986 111122222222222 3589
Q ss_pred EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+++|+||+|+...+....+..+.+.+. .....++++||+++.|+.++++++.+.+.
T Consensus 116 vilVlNKiDl~~~~~~l~~~~~~l~~~--~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 116 VILVLNKIDLVKDKEELLPLLEELSEL--MDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred EEEEEECCcCCCCHHHHHHHHHHHHhh--CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 999999999873211111111111111 12356889999999999999999988763
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.41 E-value=7.8e-13 Score=124.51 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=71.1
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+++|||+|++.+.+....-...++++++|+|+++ .....++...+..+ .. ....|+++++||+|+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~----------~~~~~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE----------PCPQPQTKEHLMAL-DI--IGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCChhHHHHHHHH-HH--cCCCcEEEEEEeecc
Confidence 579999999998776543333445799999999985 11011222222222 11 122478999999998
Q ss_pred cccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..+... ...+...+..+ ......++++||++|.|+.+++++|...+.
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGT-VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccchhHHHHHHHHHHHhccc-cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 653111 11222222221 113467899999999999999999987653
No 213
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.41 E-value=4.9e-13 Score=111.85 Aligned_cols=98 Identities=11% Similarity=0.304 Sum_probs=59.0
Q ss_pred eeeeEecCCCcc------cccccc----cccc---CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318 172 HFKMFDVGGQRS------ERKKWI----HCFE---GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD 238 (313)
Q Consensus 172 ~~~i~D~~Gq~~------~r~~w~----~~~~---~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~ 238 (313)
.+.+||++|... .+..|. .|++ .++++++|+|.+. .-. .....++. .+.. .+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~----------~~~-~~~~~~~~-~~~~---~~ 129 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH----------PLK-ELDLEMLE-WLRE---RG 129 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC----------CCC-HHHHHHHH-HHHH---cC
Confidence 699999999532 123332 3444 4679999999875 111 11122232 2222 36
Q ss_pred CcEEEEeecCCccccc-c--cCCcccccCcCCCCCCCeEEEEeecccCcCH
Q psy8318 239 TSIILFLNKNDLFQEK-I--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNI 286 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k-~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v 286 (313)
.|+++++||+|+..+. . ....+.+.+... ...+.++++||++|+|+
T Consensus 130 ~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 130 IPVLIVLTKADKLKKSELNKQLKKIKKALKKD--ADDPSVQLFSSLKKTGI 178 (179)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHHHHHHhhc--cCCCceEEEECCCCCCC
Confidence 8999999999986421 1 122334444322 12357899999999997
No 214
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.41 E-value=1.5e-12 Score=121.30 Aligned_cols=131 Identities=14% Similarity=0.173 Sum_probs=80.5
Q ss_pred eeecceeEEEEEecC-ceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 156 VKTTGIIETHFTFKD-LHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
.|..|+ +.+.+ .++.++||+|...-. .....++++++++++|+|++.++. .+.+++...+.
T Consensus 195 ~p~~Gi----v~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~e~~~~l~ 263 (390)
T PRK12298 195 VPNLGV----VRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPVENARIII 263 (390)
T ss_pred CcEEEE----EEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChHHHHHHHH
Confidence 455554 34443 569999999974311 122345789999999999985321 23334334444
Q ss_pred HHHHh-CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 228 DSICN-SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 228 ~~~~~-~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+++.. .+.+.+.|++||+||+|+..+......+......+ .....++.+||+++.|+.+++++|.+.+..
T Consensus 264 ~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 264 NELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--GWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--CCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 44433 23345689999999999865321111111111111 011247899999999999999999987754
No 215
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=1.1e-12 Score=131.61 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=74.3
Q ss_pred EEEecCceeeeEecCCCcc--------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 165 HFTFKDLHFKMFDVGGQRS--------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
..++++..+.+|||||+.. +...+..+++.+|++|||+|.++ .+......+...+..
T Consensus 317 ~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~------------~~~~~d~~i~~~Lr~--- 381 (712)
T PRK09518 317 DAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV------------GLTSTDERIVRMLRR--- 381 (712)
T ss_pred EEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC------------CCCHHHHHHHHHHHh---
Confidence 4455678899999999763 23445567899999999999875 111111122222222
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+.|+++|+||+|+.... ....+.+. . ..+ ..+++||++|.||.++|++|.+.+..
T Consensus 382 ~~~pvIlV~NK~D~~~~~---~~~~~~~~-l--g~~-~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 382 AGKPVVLAVNKIDDQASE---YDAAEFWK-L--GLG-EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred cCCCEEEEEECcccccch---hhHHHHHH-c--CCC-CeEEEECCCCCCchHHHHHHHHhccc
Confidence 468999999999975421 11111111 1 111 24689999999999999999988754
No 216
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.38 E-value=7e-12 Score=122.20 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=74.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+|||+||+.++.+|..+++.++++++|+|+++-. .... .+...++. . .+.|+++++||+|+
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~-------~~qt-~e~i~~l~----~---~~vpiIVv~NK~Dl 133 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGF-------KPQT-QEALNILR----M---YKTPFVVAANKIDR 133 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC-------CHhH-HHHHHHHH----H---cCCCEEEEEECCCc
Confidence 35899999999999999999999999999999998611 0111 22222221 1 36899999999998
Q ss_pred cccccc-------------CC----c-----------ccc--cCc-------CCCCCCCeEEEEeecccCcCHHHHHHHH
Q psy8318 251 FQEKIT-------------KS----P-----------LTV--CFP-------EYTDQKEIYTHFTCATDTSNIQFVFDAV 293 (313)
Q Consensus 251 ~~~k~~-------------~~----~-----------l~~--~f~-------~~~~~~~~~~~~tSA~~~~~v~~~f~~i 293 (313)
....-. .. . +.+ ..+ ++ ...+.+.++||++|+|+.+++.++
T Consensus 134 ~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~--~~~v~iVpVSA~tGeGideLl~~l 211 (590)
T TIGR00491 134 IPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDF--TKTVAIIPISAITGEGIPELLTML 211 (590)
T ss_pred cchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhc--CCCceEEEeecCCCCChhHHHHHH
Confidence 632100 00 0 010 000 11 134689999999999999999988
Q ss_pred HHHH
Q psy8318 294 TDVI 297 (313)
Q Consensus 294 ~~~i 297 (313)
....
T Consensus 212 ~~l~ 215 (590)
T TIGR00491 212 AGLA 215 (590)
T ss_pred HHHH
Confidence 7543
No 217
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.38 E-value=2.5e-12 Score=125.97 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=81.0
Q ss_pred cceeEEEEEecCceeeeEecCCCcccccc------ccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 159 TGIIETHFTFKDLHFKMFDVGGQRSERKK------WIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~------w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
+......+++++.++++|||+|+..+... +..|+ ++++++++|+|.++. . ....+..++
T Consensus 29 v~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l----------e---r~l~l~~ql 95 (591)
T TIGR00437 29 VEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL----------E---RNLYLTLQL 95 (591)
T ss_pred EEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc----------h---hhHHHHHHH
Confidence 33444566677888999999999877654 44454 478999999999862 1 223334444
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+ .+.|+++++||+|+.+++....+. +.+. ...++.+++|||++|+|++++++++.+..
T Consensus 96 ~~----~~~PiIIVlNK~Dl~~~~~i~~d~-~~L~---~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 96 LE----LGIPMILALNLVDEAEKKGIRIDE-EKLE---ERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred Hh----cCCCEEEEEehhHHHHhCCChhhH-HHHH---HHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 33 368999999999986532211111 2222 12456789999999999999999998753
No 218
>KOG1532|consensus
Probab=99.37 E-value=1.6e-12 Score=111.75 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=72.9
Q ss_pred ceeeeEecCCCcccccccccc-------c--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 171 LHFKMFDVGGQRSERKKWIHC-------F--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~-------~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
..+.++||+||- +-..|..- + ....+|+||+|... ..++..+-...-+-.+++-. .+.|+
T Consensus 116 ~~~~liDTPGQI-E~FtWSAsGsIIte~lass~ptvv~YvvDt~r-------s~~p~tFMSNMlYAcSilyk---tklp~ 184 (366)
T KOG1532|consen 116 FDYVLIDTPGQI-EAFTWSASGSIITETLASSFPTVVVYVVDTPR-------STSPTTFMSNMLYACSILYK---TKLPF 184 (366)
T ss_pred cCEEEEcCCCce-EEEEecCCccchHhhHhhcCCeEEEEEecCCc-------CCCchhHHHHHHHHHHHHHh---ccCCe
Confidence 567778888873 23345431 1 22468899999875 22244555455444555432 57899
Q ss_pred EEEeecCCcccccccCCcc------cc--------cCcCCC---------CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 242 ILFLNKNDLFQEKITKSPL------TV--------CFPEYT---------DQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 242 ilv~NK~Dl~~~k~~~~~l------~~--------~f~~~~---------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+++||+|+.+.....+-. .+ ++.... -.+++....+||.+|.|..+.|..|.+.+-
T Consensus 185 ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 185 IVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 9999999987643322111 11 111110 124567888999999999999999887664
Q ss_pred H
Q psy8318 299 K 299 (313)
Q Consensus 299 ~ 299 (313)
+
T Consensus 265 E 265 (366)
T KOG1532|consen 265 E 265 (366)
T ss_pred H
Confidence 3
No 219
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.36 E-value=9.4e-12 Score=110.69 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=62.9
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
+.-|+......+.+++.++.+|||+|+..+...|..+++.++++|+|+|.++.- .......+..+..
T Consensus 48 rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-----------~~~t~~~~~~~~~-- 114 (270)
T cd01886 48 RGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-----------EPQTETVWRQADR-- 114 (270)
T ss_pred CCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-----------CHHHHHHHHHHHH--
Confidence 344555556677889999999999999988888999999999999999988621 1222344444322
Q ss_pred CCCCCcEEEEeecCCccc
Q psy8318 235 WFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~ 252 (313)
.++|++++.||+|+.+
T Consensus 115 --~~~p~ivviNK~D~~~ 130 (270)
T cd01886 115 --YNVPRIAFVNKMDRTG 130 (270)
T ss_pred --cCCCEEEEEECCCCCC
Confidence 3579999999999865
No 220
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.35 E-value=8.7e-12 Score=111.10 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=62.2
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
..|+......+.+++..+++|||+|+..+...+..++..++++++|+|.++. .. ......++.+..
T Consensus 49 ~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g----------~~-~~~~~~~~~~~~--- 114 (268)
T cd04170 49 KMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG----------VE-VGTEKLWEFADE--- 114 (268)
T ss_pred cccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC----------CC-HHHHHHHHHHHH---
Confidence 4555555667778889999999999988878888999999999999999872 11 223344443322
Q ss_pred CCCCcEEEEeecCCcccc
Q psy8318 236 FMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~ 253 (313)
.+.|+++++||+|....
T Consensus 115 -~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 115 -AGIPRIIFINKMDRERA 131 (268)
T ss_pred -cCCCEEEEEECCccCCC
Confidence 35799999999997653
No 221
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=3e-12 Score=112.94 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=69.5
Q ss_pred ceeeeEecCCCcc---ccccccccccC-----CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 171 LHFKMFDVGGQRS---ERKKWIHCFEG-----VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 171 ~~~~i~D~~Gq~~---~r~~w~~~~~~-----~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
..+.+||++|+.. ++..|..+++. +++++|++|.+.... ...+... .++...... ..+.|++
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~-~~l~~~~~~--~~~~~~i 166 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSL-LLLALSVQL--RLGLPQI 166 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHH-HHHHHHHHH--HcCCCEE
Confidence 4688999999855 46667555433 889999999975100 1111111 111111111 1368999
Q ss_pred EEeecCCcccccccCCcccccCcC-------------------------CCC-CCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEKITKSPLTVCFPE-------------------------YTD-QKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 243 lv~NK~Dl~~~k~~~~~l~~~f~~-------------------------~~~-~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+|+||+|+..+... ..+...+.+ +.. .....++++||++++|++++.++|.+.
T Consensus 167 ~v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 167 PVLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred EEEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 99999998653111 111111111 100 122467899999999999999999876
Q ss_pred H
Q psy8318 297 I 297 (313)
Q Consensus 297 i 297 (313)
+
T Consensus 246 l 246 (253)
T PRK13768 246 F 246 (253)
T ss_pred c
Confidence 5
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.28 E-value=1.5e-11 Score=100.54 Aligned_cols=108 Identities=9% Similarity=0.129 Sum_probs=64.7
Q ss_pred eeeeEecCCCcc----------cccccccccc---CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318 172 HFKMFDVGGQRS----------ERKKWIHCFE---GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD 238 (313)
Q Consensus 172 ~~~i~D~~Gq~~----------~r~~w~~~~~---~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~ 238 (313)
.+.+||++|... +...+..|+. .++++++++|..... .....+...++.. .+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~-------~~ 110 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEE-------LG 110 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHH-------cC
Confidence 899999999432 3344444554 357888999887511 0111122222222 24
Q ss_pred CcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 239 TSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
.|+++++||+|+....... ..+...+... .....++++||+++.++.++++++.+.
T Consensus 111 ~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 111 IPFLVVLTKADKLKKSELAKALKEIKKELKLF--EIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCEEEEEEchhcCChHHHHHHHHHHHHHHHhc--cCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 7999999999985321111 1122111100 133467899999999999999998864
No 223
>PRK13351 elongation factor G; Reviewed
Probab=99.27 E-value=2.7e-11 Score=121.53 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=66.0
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
+..|++.....+.+++..+++|||+|+..+...|..+++.+|++|+|+|.++ .... .....+..+..
T Consensus 57 r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~----------~~~~-~~~~~~~~~~~-- 123 (687)
T PRK13351 57 RGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVT----------GVQP-QTETVWRQADR-- 123 (687)
T ss_pred cCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCH-HHHHHHHHHHh--
Confidence 5667777777888899999999999999999999999999999999999987 2222 23344444322
Q ss_pred CCCCCcEEEEeecCCcccc
Q psy8318 235 WFMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~ 253 (313)
.++|+++|+||+|+...
T Consensus 124 --~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 124 --YGIPRLIFINKMDRVGA 140 (687)
T ss_pred --cCCCEEEEEECCCCCCC
Confidence 35899999999998764
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.26 E-value=4.3e-11 Score=103.63 Aligned_cols=114 Identities=8% Similarity=0.112 Sum_probs=71.7
Q ss_pred EEecCceeeeEecCCCcccccccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318 166 FTFKDLHFKMFDVGGQRSERKKWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL 243 (313)
Q Consensus 166 ~~~~~~~~~i~D~~Gq~~~r~~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil 243 (313)
++.++..+.+.|++|++.+.+--..... .+|++++|+|... .-.......+..+.. .+.|+++
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~-----------g~~~~d~~~l~~l~~----~~ip~iv 143 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA-----------GIIGMTKEHLGLALA----LNIPVFV 143 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEEE
Confidence 3456788999999999877554333343 5899999999875 112333334443322 3579999
Q ss_pred EeecCCccccc-cc--CCcccccCcC----------------------CCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318 244 FLNKNDLFQEK-IT--KSPLTVCFPE----------------------YTDQKEIYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 244 v~NK~Dl~~~k-~~--~~~l~~~f~~----------------------~~~~~~~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
++||+|+..+. .. ...+.+.+.. .......+++.+||.+|+|++++.+.|.
T Consensus 144 vvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 144 VVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred EEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 99999975431 11 1122222210 0012345789999999999999887664
No 225
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.25 E-value=3.2e-11 Score=121.09 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=76.3
Q ss_pred EEEEEecCceeeeEecCCCcccccc----------ccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRSERKK----------WIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~~r~~----------w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
...++.++.++++||++|+.++... ...++ ..+|++++|+|.++. .+ ...+..++
T Consensus 42 ~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l----------er---~l~l~~ql 108 (772)
T PRK09554 42 EGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ER---NLYLTLQL 108 (772)
T ss_pred EEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc----------hh---hHHHHHHH
Confidence 3345667889999999998765432 22343 479999999998862 22 23344444
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+ .+.|+++++||+|+.+++-..... +.+. ...++.++++||.+|+|++++.+.+.+..
T Consensus 109 ~e----~giPvIvVlNK~Dl~~~~~i~id~-~~L~---~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 109 LE----LGIPCIVALNMLDIAEKQNIRIDI-DALS---ARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HH----cCCCEEEEEEchhhhhccCcHHHH-HHHH---HHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 33 358999999999986432111111 1111 12456789999999999999998887654
No 226
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.25 E-value=7e-11 Score=100.16 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=72.8
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~ 237 (313)
|+......++.++.++.+.||+|+..+..-.......+|++++|+|.+. .-.......+..+.. .
T Consensus 52 Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~~~~~~~~~~~~----~ 116 (195)
T cd01884 52 TINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-----------GPMPQTREHLLLARQ----V 116 (195)
T ss_pred cEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----c
Confidence 3333344556677889999999998766555556788999999999875 111223333333322 2
Q ss_pred CCc-EEEEeecCCccccc-c---cCCcccccCcCCC-CCCCeEEEEeecccCcCHH
Q psy8318 238 DTS-IILFLNKNDLFQEK-I---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQ 287 (313)
Q Consensus 238 ~~p-iilv~NK~Dl~~~k-~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~ 287 (313)
+.| ++++.||+|+..+. . ...++...+..+. ....+.++++||.+|.|+.
T Consensus 117 ~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 117 GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 355 78999999985321 1 1123444444331 2235789999999999864
No 227
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.22 E-value=4.2e-11 Score=117.14 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=75.9
Q ss_pred eeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCccc
Q psy8318 173 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 173 ~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 252 (313)
+.+|||+|++.+...|...+..+|++|+|+|.++- -..++...+..+ .. .++|+++++||+|+..
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-----------~~~qt~e~i~~~-~~---~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-----------FQPQTIEAINIL-KR---RKTPFVVAANKIDRIP 137 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-----------CCHhHHHHHHHH-HH---cCCCEEEEEECcCCch
Confidence 78999999999999999889999999999999861 111222222222 11 3689999999999742
Q ss_pred ccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhhcCCc
Q psy8318 253 EKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIR 308 (313)
Q Consensus 253 ~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~~~~~ 308 (313)
. +....+..++++++.++.++.+.|+++...+... +...|+.
T Consensus 138 ~-------------~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~-L~~~g~~ 179 (586)
T PRK04004 138 G-------------WKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQ-LSELGFS 179 (586)
T ss_pred h-------------hhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 1 1111345577889999999999998888777533 4555543
No 228
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.22 E-value=5.8e-11 Score=116.77 Aligned_cols=113 Identities=18% Similarity=0.243 Sum_probs=74.0
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-EEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-IILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-iilv~NK 247 (313)
++..+.+|||+|++.+.+.-...+.++|++++|+|.++ .-...+.+.+. ++.. .++| ++|++||
T Consensus 49 ~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-----------g~~~qT~ehl~-il~~---lgi~~iIVVlNK 113 (614)
T PRK10512 49 DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-----------GVMAQTREHLA-ILQL---TGNPMLTVALTK 113 (614)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-----------CCcHHHHHHHH-HHHH---cCCCeEEEEEEC
Confidence 35678999999998886655666889999999999885 11222222222 2221 1244 6899999
Q ss_pred CCcccc-ccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 248 NDLFQE-KIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 248 ~Dl~~~-k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+|+..+ .+. ..++.+.+... .-....++++||++|+|+.+++++|.+..
T Consensus 114 iDlv~~~~~~~v~~ei~~~l~~~-~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 114 ADRVDEARIAEVRRQVKAVLREY-GFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred CccCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 998642 111 12333333222 11235689999999999999999988654
No 229
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.17 E-value=1.8e-10 Score=99.51 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=52.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+..+++|||+|+..+......+++.++++|+|+|.++ . -..+....+..... .+.|+++++||+|
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~----------g-~~~~t~~~l~~~~~----~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE----------G-VCVQTETVLRQALK----ERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC----------C-CCHHHHHHHHHHHH----cCCCEEEEEECCC
Confidence 6789999999999998888889999999999999986 1 22334444444433 3579999999999
Q ss_pred cc
Q psy8318 250 LF 251 (313)
Q Consensus 250 l~ 251 (313)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 76
No 230
>COG1159 Era GTPase [General function prediction only]
Probab=99.17 E-value=2.3e-10 Score=100.34 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=72.2
Q ss_pred ecCceeeeEecCCCcccccccc--------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318 168 FKDLHFKMFDVGGQRSERKKWI--------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT 239 (313)
Q Consensus 168 ~~~~~~~i~D~~Gq~~~r~~w~--------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~ 239 (313)
.++.++.+.||+|-..-+..-. .-+.++|.|+||+|.++ ... ......++.+ ++ .+.
T Consensus 51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~----------~~~-~~d~~il~~l-k~---~~~ 115 (298)
T COG1159 51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE----------GWG-PGDEFILEQL-KK---TKT 115 (298)
T ss_pred cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccc----------cCC-ccHHHHHHHH-hh---cCC
Confidence 3678999999999544333222 23688999999999986 111 1122223333 22 467
Q ss_pred cEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 240 SIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 240 piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|++++.||+|....+....++.+.+... .....++++||+.|.|+..+.+.+...+-
T Consensus 116 pvil~iNKID~~~~~~~l~~~~~~~~~~--~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 116 PVILVVNKIDKVKPKTVLLKLIAFLKKL--LPFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred CeEEEEEccccCCcHHHHHHHHHHHHhh--CCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 9999999999765433112222221111 01226899999999999999888877653
No 231
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.17 E-value=3.4e-12 Score=111.34 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=61.2
Q ss_pred eeeeEecCCCccccccccccc--------cCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEE
Q psy8318 172 HFKMFDVGGQRSERKKWIHCF--------EGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 172 ~~~i~D~~Gq~~~r~~w~~~~--------~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~pii 242 (313)
.+.++||+||...-.-|...- ...-+++|++|..-... +..+-.+ +..+..+++ .+.|.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~-------~~~f~s~~L~s~s~~~~----~~lP~v 160 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD-------PSKFVSSLLLSLSIMLR----LELPHV 160 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS-------HHHHHHHHHHHHHHHHH----HTSEEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC-------hhhHHHHHHHHHHHHhh----CCCCEE
Confidence 688999999987665554433 45668999999886321 2222222 222222222 368999
Q ss_pred EEeecCCccccc-----------------------ccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEK-----------------------ITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 243 lv~NK~Dl~~~k-----------------------~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.++||+|+..+. -....+...+.+| ... .++..|+.+++++.+++..|-+.+
T Consensus 161 nvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~---~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 161 NVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF---GLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp EEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC---SSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred EeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc---CCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 999999997621 0112333444555 233 789999999999999998877643
No 232
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.15 E-value=1.9e-10 Score=111.23 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=61.5
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
+..|+......+++++..+++|||+|+..+......+++.++++|+|+|.++- -......+++.. .
T Consensus 63 rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~~~-~-- 128 (526)
T PRK00741 63 RGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG-----------VEPQTRKLMEVC-R-- 128 (526)
T ss_pred hCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC-----------CCHHHHHHHHHH-H--
Confidence 34445555667888999999999999998887777789999999999999861 111233444332 2
Q ss_pred CCCCCcEEEEeecCCccc
Q psy8318 235 WFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~ 252 (313)
..++|+++++||+|+..
T Consensus 129 -~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 129 -LRDTPIFTFINKLDRDG 145 (526)
T ss_pred -hcCCCEEEEEECCcccc
Confidence 24689999999999865
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.15 E-value=3.6e-10 Score=97.22 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=51.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+++|||+|+..+...+..++..++++|+|+|.++. ... ....++..... .+.|+++++||+|
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~----------~~~-~~~~~~~~~~~----~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG----------VTS-NTERLIRHAIL----EGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC----------CCH-HHHHHHHHHHH----cCCCEEEEEECcc
Confidence 47899999999999988888999999999999999862 222 22333333322 3489999999999
Q ss_pred cc
Q psy8318 250 LF 251 (313)
Q Consensus 250 l~ 251 (313)
+.
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 74
No 234
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.15 E-value=1.8e-10 Score=111.39 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=58.8
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.-|+......+++++..+++|||+|+..+......+++.++++|+|+|.++- -......+++ .+..
T Consensus 65 gisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~-~~~~-- 130 (527)
T TIGR00503 65 GISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-----------VETRTRKLME-VTRL-- 130 (527)
T ss_pred CCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-----------CCHHHHHHHH-HHHh--
Confidence 3344445567788899999999999988776556678999999999998861 1112233333 3322
Q ss_pred CCCCcEEEEeecCCccc
Q psy8318 236 FMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~ 252 (313)
.++|+++|+||+|+..
T Consensus 131 -~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 131 -RDTPIFTFMNKLDRDI 146 (527)
T ss_pred -cCCCEEEEEECccccC
Confidence 4689999999999853
No 235
>PRK12736 elongation factor Tu; Reviewed
Probab=99.14 E-value=3.7e-10 Score=105.99 Aligned_cols=117 Identities=20% Similarity=0.259 Sum_probs=70.7
Q ss_pred EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-EEE
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-IIL 243 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-iil 243 (313)
.++.++..+.++||+|++.+.+.-..-...+|++++|+|.++ .-...+.+.+..+.. .++| +++
T Consensus 69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-----------g~~~~t~~~~~~~~~----~g~~~~Iv 133 (394)
T PRK12736 69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHILLARQ----VGVPYLVV 133 (394)
T ss_pred EecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHH----cCCCEEEE
Confidence 344466789999999998766544444567899999999875 112223333333322 2467 678
Q ss_pred EeecCCcccc-ccc---CCcccccCcCCC-CCCCeEEEEeecccCc--------CHHHHHHHHHHH
Q psy8318 244 FLNKNDLFQE-KIT---KSPLTVCFPEYT-DQKEIYTHFTCATDTS--------NIQFVFDAVTDV 296 (313)
Q Consensus 244 v~NK~Dl~~~-k~~---~~~l~~~f~~~~-~~~~~~~~~tSA~~~~--------~v~~~f~~i~~~ 296 (313)
++||+|+..+ ... ..++...+..+. ....+.++++||++|. ++.++++.+...
T Consensus 134 viNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 134 FLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred EEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 9999998632 111 123333332221 1124678999999983 455555555544
No 236
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.13 E-value=8.6e-10 Score=102.20 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=82.0
Q ss_pred eecceeEEEEEecCceeeeEecCCCcccccc--------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHH
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKK--------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~ 228 (313)
.|.-+.+..+..+++.+.+.||+|-+.-... -..-.+.||.|+||+|.+.. --.+-...++
T Consensus 251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-----------~~~~d~~~~~ 319 (454)
T COG0486 251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-----------LDKEDLALIE 319 (454)
T ss_pred CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CchhhHHHHH
Confidence 4455677888999999999999998643211 12346789999999999961 1122223333
Q ss_pred HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
....+.|+++|.||.|+..+.. ...+ +.. .+...+.+||++|+|++.+-+.|.+.+...
T Consensus 320 -----~~~~~~~~i~v~NK~DL~~~~~-~~~~-~~~------~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 320 -----LLPKKKPIIVVLNKADLVSKIE-LESE-KLA------NGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -----hcccCCCEEEEEechhcccccc-cchh-hcc------CCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 1235689999999999987522 2211 111 233678999999999999888888766544
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.12 E-value=1.3e-10 Score=111.24 Aligned_cols=119 Identities=11% Similarity=0.031 Sum_probs=70.4
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
-|+-.....++.++.++.++||+|++.+.+....-...+|++++|+|..+-- .....+...+...+
T Consensus 93 iTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~--------~~qt~~~~~l~~~l------ 158 (474)
T PRK05124 93 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV--------LDQTRRHSFIATLL------ 158 (474)
T ss_pred CCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cccchHHHHHHHHh------
Confidence 3444444456667889999999999877554444468999999999987510 01111112222111
Q ss_pred CCCcEEEEeecCCcccccc-cCC----cccccCcCCCCCCCeEEEEeecccCcCHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKI-TKS----PLTVCFPEYTDQKEIYTHFTCATDTSNIQFV 289 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~-~~~----~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~ 289 (313)
...|++|++||+|+.+... ... .+...+..+.......++++||++|+|+.+.
T Consensus 159 g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 159 GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1247899999999863211 011 1211111110012467899999999998753
No 238
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.12 E-value=2.9e-10 Score=108.03 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=76.8
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCC--cccccccccccccHHHHHHHHHHHHhC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSG--YDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~--~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
.-|+......++.++..+++.|++||+.|.+.-...+..+|++|+|+|.++ |..... ......+...+. ..
T Consensus 70 GiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~---~~~qT~eh~~~~----~~ 142 (447)
T PLN00043 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS---KDGQTREHALLA----FT 142 (447)
T ss_pred CceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccC---CCchHHHHHHHH----HH
Confidence 344445555667788999999999999998888888899999999999986 100000 001222222221 11
Q ss_pred CCCCCC-cEEEEeecCCccccccc-------CCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318 234 KWFMDT-SIILFLNKNDLFQEKIT-------KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 234 ~~~~~~-piilv~NK~Dl~~~k~~-------~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~ 288 (313)
.++ ++++++||+|+...... ..++...+.... ....+.++++||.+|+|+.+
T Consensus 143 ---~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 143 ---LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ---cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 234 57889999997521111 123444433221 12347899999999999853
No 239
>PRK12735 elongation factor Tu; Reviewed
Probab=99.12 E-value=4.1e-10 Score=105.79 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=64.5
Q ss_pred EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE-
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII- 242 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii- 242 (313)
..++.++..+.++||+|++.+.+.-..-...+|++++|+|..+- -.....+.+..+.. .++|.+
T Consensus 68 ~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g-----------~~~qt~e~l~~~~~----~gi~~ii 132 (396)
T PRK12735 68 VEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ----VGVPYIV 132 (396)
T ss_pred eEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CchhHHHHHHHHHH----cCCCeEE
Confidence 34445677899999999976654444445678999999998851 11222233333221 246755
Q ss_pred EEeecCCccccc-c---cCCcccccCcCCC-CCCCeEEEEeecccCcC
Q psy8318 243 LFLNKNDLFQEK-I---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSN 285 (313)
Q Consensus 243 lv~NK~Dl~~~k-~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~ 285 (313)
+++||+|+..+. . ...++...+..+. ....+.++++||.+|.|
T Consensus 133 vvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 133 VFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence 679999986321 1 1123334443331 11247789999999854
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.11 E-value=2.5e-10 Score=107.50 Aligned_cols=117 Identities=12% Similarity=0.051 Sum_probs=70.7
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
-|+......++.++.++.++||+|++.+-+.-..-...+|++|+|+|..+-- .....+...+...+
T Consensus 66 iTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~--------~~qt~~~~~~~~~~------ 131 (406)
T TIGR02034 66 ITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV--------LEQTRRHSYIASLL------ 131 (406)
T ss_pred cCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--------ccccHHHHHHHHHc------
Confidence 3444445566667889999999999877554445578899999999987510 11111222222111
Q ss_pred CCCcEEEEeecCCccccccc-----CCcccccCcCCCCCCCeEEEEeecccCcCHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKIT-----KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~-----~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~ 288 (313)
...++++++||+|+....-. ...+...+..+ ....+.++++||.+|+|+.+
T Consensus 132 ~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 132 GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQL-GFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHc-CCCCccEEEeecccCCCCcc
Confidence 23478999999998642110 11222111111 11245689999999999875
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.08 E-value=6.6e-10 Score=105.65 Aligned_cols=122 Identities=18% Similarity=0.135 Sum_probs=75.4
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCccccccccc--ccccHHHHHHHHHHHHhCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDE--EMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~--~~~~l~e~~~~~~~~~~~~ 234 (313)
-|+.+....++.++..+.++|++|++.|-+........+|++|+|+|.++-- .|.. ......+...+...
T Consensus 71 iTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~---~e~~~~~~~qT~eh~~~~~~----- 142 (446)
T PTZ00141 71 ITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGE---FEAGISKDGQTREHALLAFT----- 142 (446)
T ss_pred EeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCc---eecccCCCccHHHHHHHHHH-----
Confidence 3444445566778899999999999988777777788999999999988510 0000 00222333332221
Q ss_pred CCCCCc-EEEEeecCCccc-----ccc--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318 235 WFMDTS-IILFLNKNDLFQ-----EKI--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 235 ~~~~~p-iilv~NK~Dl~~-----~k~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~ 288 (313)
.++| ++++.||+|... ++. ...++...|.... ....+.++++||.+|+|+.+
T Consensus 143 --~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 143 --LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred --cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2444 789999999532 111 1123444443221 12357899999999999853
No 242
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.08 E-value=8.8e-10 Score=103.54 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=64.3
Q ss_pred EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE-E
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI-I 242 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi-i 242 (313)
..++.++.++.+|||+|++.+.+.-..-...+|++++|+|..+ .-...+.+.+..+.. .++|. +
T Consensus 68 ~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~e~l~~~~~----~gi~~iI 132 (394)
T TIGR00485 68 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD-----------GPMPQTREHILLARQ----VGVPYIV 132 (394)
T ss_pred EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEEE
Confidence 3444466789999999998765433333456799999999885 112223333333322 24565 5
Q ss_pred EEeecCCccccc-cc---CCcccccCcCCC-CCCCeEEEEeecccCc
Q psy8318 243 LFLNKNDLFQEK-IT---KSPLTVCFPEYT-DQKEIYTHFTCATDTS 284 (313)
Q Consensus 243 lv~NK~Dl~~~k-~~---~~~l~~~f~~~~-~~~~~~~~~tSA~~~~ 284 (313)
+++||+|+.... .. ..++...+..+. ....+.++++||.+|.
T Consensus 133 vvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 133 VFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred EEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 689999986421 11 123444444442 1123678999999875
No 243
>PRK12740 elongation factor G; Reviewed
Probab=99.01 E-value=1.7e-09 Score=108.34 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=64.9
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
+..|++.....+.+++..+.+|||+|+..+...|..++..+|++|+|+|.++. .. ......+..+..
T Consensus 44 rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~----------~~-~~~~~~~~~~~~-- 110 (668)
T PRK12740 44 RGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG----------VE-PQTETVWRQAEK-- 110 (668)
T ss_pred cCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC----------cC-HHHHHHHHHHHH--
Confidence 56677777788888999999999999988888888899999999999999862 11 223344444322
Q ss_pred CCCCCcEEEEeecCCccc
Q psy8318 235 WFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~ 252 (313)
.+.|+++|+||+|+..
T Consensus 111 --~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 111 --YGVPRIIFVNKMDRAG 126 (668)
T ss_pred --cCCCEEEEEECCCCCC
Confidence 3579999999999864
No 244
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=7.8e-10 Score=97.96 Aligned_cols=126 Identities=22% Similarity=0.237 Sum_probs=82.5
Q ss_pred eeecceeEEEEEecCceeeeEecCCCcc----cccc----cccccc-CCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRS----ERKK----WIHCFE-GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL 226 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~----~r~~----w~~~~~-~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~ 226 (313)
-.|.|++...|+.+..++|++||+|--. +|.- -...++ =.++|+|++|.|. .+-.++++...+
T Consensus 200 FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se--------~cgy~lE~Q~~L 271 (346)
T COG1084 200 FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSE--------TCGYSLEEQISL 271 (346)
T ss_pred ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc--------ccCCCHHHHHHH
Confidence 3688999999999999999999999421 1110 011122 2678999999997 346788999999
Q ss_pred HHHHHhCCCCCCCcEEEEeecCCcccc-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 227 FDSICNSKWFMDTSIILFLNKNDLFQE-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 227 ~~~~~~~~~~~~~piilv~NK~Dl~~~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
|+++.. .+. .|+++|.||.|+.+. ++.... ..+..- -......+++..+.+++.+-..+....
T Consensus 272 ~~eIk~--~f~-~p~v~V~nK~D~~~~e~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 272 LEEIKE--LFK-APIVVVINKIDIADEEKLEEIE--ASVLEE---GGEEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred HHHHHH--hcC-CCeEEEEecccccchhHHHHHH--HHHHhh---ccccccceeeeehhhHHHHHHHHHHHh
Confidence 999854 344 899999999998732 222211 111100 112245567777777776665555543
No 245
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=100.94 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=73.8
Q ss_pred EEEecCceeeeEecCCCccc---------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 165 HFTFKDLHFKMFDVGGQRSE---------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~---------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
..++.+..+.++||||-+.. +.+....++.||++|||+|..+ .+...-+.+.+++..
T Consensus 45 ~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~------------Git~~D~~ia~~Lr~-- 110 (444)
T COG1160 45 DAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE------------GITPADEEIAKILRR-- 110 (444)
T ss_pred eeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC------------CCCHHHHHHHHHHHh--
Confidence 44667788999999997632 2233445788999999999875 222233333333331
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+.|++||.||+|-........++ +. .++ .++.+||..|.|+.++.+++.+.+
T Consensus 111 -~~kpviLvvNK~D~~~~e~~~~ef---ys-----lG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 111 -SKKPVILVVNKIDNLKAEELAYEF---YS-----LGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred -cCCCEEEEEEcccCchhhhhHHHH---Hh-----cCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 458999999999966321111122 11 121 468999999999999999998876
No 246
>KOG1489|consensus
Probab=99.00 E-value=2.2e-09 Score=94.54 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=79.8
Q ss_pred eeecceeEEEEEecC-ceeeeEecCCC-------ccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 156 VKTTGIIETHFTFKD-LHFKMFDVGGQ-------RSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~-~~~~i~D~~Gq-------~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
.|++|. +.+++ ..+++-|.+|- +...-....+.+.|+.++||+|++.+.. .+-++.-..+.
T Consensus 232 ~P~iG~----v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~ 300 (366)
T KOG1489|consen 232 RPHIGT----VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLI 300 (366)
T ss_pred ccccce----eeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHH
Confidence 577773 33444 33899999984 2233445667789999999999998421 13334333333
Q ss_pred HHHHh-CCCCCCCcEEEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 228 DSICN-SKWFMDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 228 ~~~~~-~~~~~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.++=. ...+.+.|.++|+||+|++++.-. .+++..++. +-+++++||+.++++.++.+.+.+
T Consensus 301 ~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq------~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 301 EELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ------NPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC------CCcEEEeeeccccchHHHHHHHhh
Confidence 33311 345678899999999999643111 134443332 226899999999999998887764
No 247
>CHL00071 tufA elongation factor Tu
Probab=99.00 E-value=2.2e-09 Score=101.26 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=69.5
Q ss_pred EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-E
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-I 241 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-i 241 (313)
...++.++.++.+.||+|++.+.+....-...+|++++|+|..+ .-.....+.+..+.. .+.| +
T Consensus 67 ~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~~~~~~~~~----~g~~~i 131 (409)
T CHL00071 67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTKEHILLAKQ----VGVPNI 131 (409)
T ss_pred EEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEE
Confidence 34455577889999999988765555555678999999999885 112333344433322 2467 7
Q ss_pred EEEeecCCccccccc----CCcccccCcCCC-CCCCeEEEEeecccCcCH
Q psy8318 242 ILFLNKNDLFQEKIT----KSPLTVCFPEYT-DQKEIYTHFTCATDTSNI 286 (313)
Q Consensus 242 ilv~NK~Dl~~~k~~----~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v 286 (313)
+++.||+|+...... ..++...+..+. ....+.+.++||.+|.|+
T Consensus 132 IvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 132 VVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 789999998642211 123444443331 122478899999999864
No 248
>PLN03126 Elongation factor Tu; Provisional
Probab=98.98 E-value=1.7e-09 Score=103.34 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=68.7
Q ss_pred EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-E
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-I 241 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-i 241 (313)
...++.++.++.++|++|++.+-+.-..-...+|++++|+|..+ .-.....+.+..+.. .++| +
T Consensus 136 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~-----------G~~~qt~e~~~~~~~----~gi~~i 200 (478)
T PLN03126 136 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-----------GPMPQTKEHILLAKQ----VGVPNM 200 (478)
T ss_pred EEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCeE
Confidence 34455678899999999998776544445677899999999886 112233344433322 2467 7
Q ss_pred EEEeecCCccccc-c---cCCcccccCcCCC-CCCCeEEEEeecccCcCH
Q psy8318 242 ILFLNKNDLFQEK-I---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNI 286 (313)
Q Consensus 242 ilv~NK~Dl~~~k-~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v 286 (313)
+++.||+|+.... . ...++...+..+. ....+.++++||.+|.|+
T Consensus 201 IvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 201 VVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred EEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 8899999986421 1 1123333333221 224578899999998654
No 249
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.98 E-value=1.7e-09 Score=91.91 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=61.4
Q ss_pred ceeeeEecCCCcccccccccc-----ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318 171 LHFKMFDVGGQRSERKKWIHC-----FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL 245 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~-----~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~ 245 (313)
..+.+||++|.......-..| +.+++.+++|.| . ++.+....+...+.. .+.|+++|+
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~-~-------------~~~~~d~~~~~~l~~---~~~~~ilV~ 114 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS-T-------------RFSSNDVKLAKAIQC---MGKKFYFVR 114 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC-C-------------CCCHHHHHHHHHHHH---hCCCEEEEE
Confidence 468999999975322211222 677888888743 2 222233323333332 257999999
Q ss_pred ecCCccc--ccccC------Cc----c----cccCcCCCCCCCeEEEEeecc--cCcCHHHHHHHHHHHHHHh
Q psy8318 246 NKNDLFQ--EKITK------SP----L----TVCFPEYTDQKEIYTHFTCAT--DTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 246 NK~Dl~~--~k~~~------~~----l----~~~f~~~~~~~~~~~~~tSA~--~~~~v~~~f~~i~~~i~~~ 300 (313)
||+|+.. +.... .. + ...++.. .-..-.++.+|+. .+.++..+.+.+...+-+.
T Consensus 115 nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 115 TKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA-GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred ecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 9999742 11100 01 1 1111111 1122367889998 4678877777777766543
No 250
>KOG0462|consensus
Probab=98.98 E-value=4.3e-09 Score=98.60 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=82.0
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.++++||+||..|+.--...+.-|+++|+|||.+. --...+..-|...++ .+..+|.|+||+|
T Consensus 124 ~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~q-----------GvqAQT~anf~lAfe----~~L~iIpVlNKID 188 (650)
T KOG0462|consen 124 SYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQ-----------GVQAQTVANFYLAFE----AGLAIIPVLNKID 188 (650)
T ss_pred ceEEEeecCCCcccccceehehhhhcCceEEEEEcCc-----------CchHHHHHHHHHHHH----cCCeEEEeeeccC
Confidence 3899999999999998877888899999999999996 333333333333333 3578999999999
Q ss_pred cccccccC--CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 250 LFQEKITK--SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 250 l~~~k~~~--~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
++.+.... .++.+.|.. ..-.+..+||++|.|+.++++.|.+.+-
T Consensus 189 lp~adpe~V~~q~~~lF~~----~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 189 LPSADPERVENQLFELFDI----PPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred CCCCCHHHHHHHHHHHhcC----CccceEEEEeccCccHHHHHHHHHhhCC
Confidence 98864322 244444432 2336889999999999999999988764
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.96 E-value=9.2e-10 Score=109.39 Aligned_cols=116 Identities=12% Similarity=0.065 Sum_probs=69.1
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~ 237 (313)
|+-.....++.++.++.++||+|++.+.+.-..-...+|++++|+|..+-- .....+...+...+ .
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--------~~~t~e~~~~~~~~------~ 156 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--------LTQTRRHSFIASLL------G 156 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--------cccCHHHHHHHHHh------C
Confidence 333444556667889999999999876544444567899999999987510 11112222222221 2
Q ss_pred CCcEEEEeecCCcccc-c--cc--CCcccccCcCCCCCCCeEEEEeecccCcCHHH
Q psy8318 238 DTSIILFLNKNDLFQE-K--IT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~-k--~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~ 288 (313)
..|++|++||+|+... + .. ..++.+.+..+ .-....++++||++|.|+.+
T Consensus 157 ~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~-~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 157 IRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKL-GLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CCeEEEEEEecccccchhHHHHHHHHHHHHHHHHc-CCCCccEEEEecccCCCccc
Confidence 3588999999998631 1 00 11222211112 11235688999999999874
No 252
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.96 E-value=4.2e-09 Score=105.63 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=61.6
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.-|+-.....+.+++.++.+|||+|+..+...+...++.+|++|+|+|.++ ... .+....+..+..
T Consensus 60 giti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~----------g~~-~~~~~~~~~~~~--- 125 (689)
T TIGR00484 60 GITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVG----------GVQ-PQSETVWRQANR--- 125 (689)
T ss_pred CCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCC----------CCC-hhHHHHHHHHHH---
Confidence 344445566778889999999999999888888899999999999999886 111 223344443322
Q ss_pred CCCCcEEEEeecCCccc
Q psy8318 236 FMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~ 252 (313)
.+.|+++++||+|+..
T Consensus 126 -~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 126 -YEVPRIAFVNKMDKTG 141 (689)
T ss_pred -cCCCEEEEEECCCCCC
Confidence 3579999999999875
No 253
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.96 E-value=2.3e-09 Score=85.28 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=61.3
Q ss_pred eEecCCCcccccccccc----ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 175 MFDVGGQRSERKKWIHC----FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 175 i~D~~Gq~~~r~~w~~~----~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
++||+|---+.+.+.+. -.+|+.|++|.|.++-.... +.. |.. .+ ++|+|=|.||+|+
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~-----pP~-------fa~-----~f-~~pvIGVITK~Dl 101 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVF-----PPG-------FAS-----MF-NKPVIGVITKIDL 101 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccC-----Cch-------hhc-----cc-CCCEEEEEECccC
Confidence 47999976555444333 36899999999999722111 111 111 12 4799999999999
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
...........+.+... .-. .++.+||.+|+||+++.++|.
T Consensus 102 ~~~~~~i~~a~~~L~~a-G~~--~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 102 PSDDANIERAKKWLKNA-GVK--EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ccchhhHHHHHHHHHHc-CCC--CeEEEECCCCcCHHHHHHHHh
Confidence 82211111222222211 112 359999999999999998875
No 254
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.95 E-value=1.3e-08 Score=94.23 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=82.5
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccc-----------cccCCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIH-----------CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL 226 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~-----------~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~ 226 (313)
|.......+++++.++.+.||+|-++-.+.... -.+.++.|++|+|.++ .-.++-...
T Consensus 213 TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-----------~~~~qD~~i 281 (444)
T COG1160 213 TRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-----------GISEQDLRI 281 (444)
T ss_pred cccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-----------CchHHHHHH
Confidence 334455677888999999999998765444431 2456899999999996 222223333
Q ss_pred HHHHHhCCCCCCCcEEEEeecCCccccc-ccC----CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 227 FDSICNSKWFMDTSIILFLNKNDLFQEK-ITK----SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~~----~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
...+.+ .+.++++++||.|+.++. ... ..+...|+-. .....+++||++|.++..+|+.+.+...
T Consensus 282 a~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l---~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 282 AGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL---DFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred HHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc---cCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 333333 467999999999986641 111 2333333322 3357899999999999999999887543
No 255
>PRK00049 elongation factor Tu; Reviewed
Probab=98.95 E-value=8.2e-09 Score=96.98 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=66.4
Q ss_pred EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
...++.++..+.+.||+|++.+.+.-..-...+|++++|+|..+ .-.......+..+.. .+.|.+
T Consensus 67 ~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~-----------g~~~qt~~~~~~~~~----~g~p~i 131 (396)
T PRK00049 67 HVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----VGVPYI 131 (396)
T ss_pred EEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCchHHHHHHHHHHH----cCCCEE
Confidence 33445567789999999997665544455678999999999875 111223333433322 246865
Q ss_pred -EEeecCCcccc-cc---cCCcccccCcCCC-CCCCeEEEEeecccCcC
Q psy8318 243 -LFLNKNDLFQE-KI---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSN 285 (313)
Q Consensus 243 -lv~NK~Dl~~~-k~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~ 285 (313)
++.||+|+..+ .. ...++...+..+. ....+.+.++||.+|.+
T Consensus 132 iVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 132 VVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred EEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 68999998632 11 1123444443321 12356788999998764
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.93 E-value=1.2e-08 Score=86.51 Aligned_cols=129 Identities=9% Similarity=0.145 Sum_probs=74.9
Q ss_pred ecceeEEEEEecCceeeeEecCCCcccc-----------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSER-----------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL 226 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r-----------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~ 226 (313)
|..+......+++..+.++||+|-.... +.+..+..+++++|||+++..+ ...-.++++.
T Consensus 36 T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~~ 106 (196)
T cd01852 36 TKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVET 106 (196)
T ss_pred ccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHHH
Confidence 3444445556678899999999954321 1122235789999999998864 2344555666
Q ss_pred HHHHHhCCCCCCCcEEEEeecCCccccc-cc------CCcccccCcCCCCCCCeEEEE-e--ecccCcCHHHHHHHHHHH
Q psy8318 227 FDSICNSKWFMDTSIILFLNKNDLFQEK-IT------KSPLTVCFPEYTDQKEIYTHF-T--CATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~------~~~l~~~f~~~~~~~~~~~~~-t--SA~~~~~v~~~f~~i~~~ 296 (313)
+.+++.... -.++++++|+.|..... +. ...+......+ ..+ .+.+. . ++..+.++.++++.|.+.
T Consensus 107 l~~~fg~~~--~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-~~r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~ 182 (196)
T cd01852 107 LQELFGEKV--LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-GGR-YVAFNNKAKGEEQEQQVKELLAKVESM 182 (196)
T ss_pred HHHHhChHh--HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-CCe-EEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence 666554322 14788999999965421 00 01122222211 111 11121 1 356778899999998887
Q ss_pred HHH
Q psy8318 297 IIK 299 (313)
Q Consensus 297 i~~ 299 (313)
+..
T Consensus 183 ~~~ 185 (196)
T cd01852 183 VKE 185 (196)
T ss_pred HHh
Confidence 765
No 257
>PRK09866 hypothetical protein; Provisional
Probab=98.92 E-value=8.4e-10 Score=106.21 Aligned_cols=113 Identities=6% Similarity=0.016 Sum_probs=67.4
Q ss_pred CceeeeEecCCCccc-cc----cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318 170 DLHFKMFDVGGQRSE-RK----KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF 244 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~-r~----~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv 244 (313)
...+.|.||||-..- .+ .-...+.++|+|+||+|... .....+ ....+.+ .. ...+.|++++
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~----------~~s~~D-eeIlk~L-kk-~~K~~PVILV 295 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ----------LKSISD-EEVREAI-LA-VGQSVPLYVL 295 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC----------CCChhH-HHHHHHH-Hh-cCCCCCEEEE
Confidence 468899999996442 11 22335789999999999875 111111 1223333 22 1113599999
Q ss_pred eecCCccccc-ccCCcccccCcCC--C-CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 245 LNKNDLFQEK-ITKSPLTVCFPEY--T-DQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 245 ~NK~Dl~~~k-~~~~~l~~~f~~~--~-~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.||+|..++. .....+..+...+ . ....-.++++||+.|.|+..+.+.|..
T Consensus 296 VNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 296 VNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred EEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 9999975311 0112222221111 0 112236899999999999999988776
No 258
>KOG1423|consensus
Probab=98.92 E-value=5.5e-09 Score=91.60 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=71.2
Q ss_pred EEecCceeeeEecCCCccccccc------------cccccCCcEEEEEEecCCcccccccccccccH-HHHHHHHHHHHh
Q psy8318 166 FTFKDLHFKMFDVGGQRSERKKW------------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRM-IESMKLFDSICN 232 (313)
Q Consensus 166 ~~~~~~~~~i~D~~Gq~~~r~~w------------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l-~e~~~~~~~~~~ 232 (313)
++-+..++.|+||+|--.-.... .+....||+|+.|+|.++- .+.+ ...+..++..
T Consensus 115 ~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~t---------r~~l~p~vl~~l~~y-- 183 (379)
T KOG1423|consen 115 ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASAT---------RTPLHPRVLHMLEEY-- 183 (379)
T ss_pred EecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCC---------cCccChHHHHHHHHH--
Confidence 34478999999999943211111 1124679999999999961 1111 1122333333
Q ss_pred CCCCCCCcEEEEeecCCcccccc---------cCCccc-------ccCcCCC------CCCCe----EEEEeecccCcCH
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKI---------TKSPLT-------VCFPEYT------DQKEI----YTHFTCATDTSNI 286 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~---------~~~~l~-------~~f~~~~------~~~~~----~~~~tSA~~~~~v 286 (313)
.+.|-+|+.||.|....+. ....+. +.|.+.. ...+| .+|++||+.|+||
T Consensus 184 ----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gi 259 (379)
T KOG1423|consen 184 ----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGI 259 (379)
T ss_pred ----hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCH
Confidence 4578899999999765432 112222 2222221 00122 4789999999999
Q ss_pred HHHHHHHHHHHH
Q psy8318 287 QFVFDAVTDVII 298 (313)
Q Consensus 287 ~~~f~~i~~~i~ 298 (313)
+++-+|+..+..
T Consensus 260 kdlkqyLmsqa~ 271 (379)
T KOG1423|consen 260 KDLKQYLMSQAP 271 (379)
T ss_pred HHHHHHHHhcCC
Confidence 999999877643
No 259
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.92 E-value=6.3e-09 Score=80.49 Aligned_cols=67 Identities=24% Similarity=0.449 Sum_probs=43.7
Q ss_pred EEEEecCceeeeEecCCCcccc---------ccccccccCCcEEEEEEecCCcccccccccccccHHH-HHHHHHHHHhC
Q psy8318 164 THFTFKDLHFKMFDVGGQRSER---------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIE-SMKLFDSICNS 233 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r---------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e-~~~~~~~~~~~ 233 (313)
..+.+.+..+.++||+|-..-. ......+..+++++||+|.++ ...+ ...+++.+ +
T Consensus 40 ~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l-~- 105 (116)
T PF01926_consen 40 GQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN------------PITEDDKNILREL-K- 105 (116)
T ss_dssp EEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHH-H-
T ss_pred eeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHH-h-
Confidence 4556678888999999963211 112333478999999999554 2222 33344444 2
Q ss_pred CCCCCCcEEEEeec
Q psy8318 234 KWFMDTSIILFLNK 247 (313)
Q Consensus 234 ~~~~~~piilv~NK 247 (313)
.+.|+++|+||
T Consensus 106 ---~~~~~i~v~NK 116 (116)
T PF01926_consen 106 ---NKKPIILVLNK 116 (116)
T ss_dssp ---TTSEEEEEEES
T ss_pred ---cCCCEEEEEcC
Confidence 56899999998
No 260
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.92 E-value=1.4e-08 Score=90.68 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=43.7
Q ss_pred ceeeeEecCCC--------------------------cccccccccccc--CCcEEEEEEecCCcccccccccccccHHH
Q psy8318 171 LHFKMFDVGGQ--------------------------RSERKKWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIE 222 (313)
Q Consensus 171 ~~~~i~D~~Gq--------------------------~~~r~~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e 222 (313)
+++++|||+|- +..+..+..++. .+++++|+++.+. ..+..
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-----------~~l~~ 131 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-----------HGLKP 131 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-----------CCCCH
Confidence 67999999993 222223334554 4788999998774 23322
Q ss_pred H-HHHHHHHHhCCCCCCCcEEEEeecCCccc
Q psy8318 223 S-MKLFDSICNSKWFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 252 (313)
. .+.++.+.. ++|+++|+||+|+..
T Consensus 132 ~D~~~lk~l~~-----~v~vi~VinK~D~l~ 157 (276)
T cd01850 132 LDIEFMKRLSK-----RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHhc-----cCCEEEEEECCCcCC
Confidence 2 555666532 489999999999854
No 261
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.91 E-value=6.4e-09 Score=92.65 Aligned_cols=134 Identities=15% Similarity=0.202 Sum_probs=85.9
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCc-------cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQR-------SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~-------~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
-.|..|+... ..+.+|.+-|++|-- ...-....+++.|..+++|+|++..|. .+-.++-..+.
T Consensus 194 L~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~ 263 (369)
T COG0536 194 LVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIR 263 (369)
T ss_pred ccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC-------CCHHHHHHHHH
Confidence 3677887654 356779999999842 122345667889999999999998432 12233333333
Q ss_pred HHHHh-CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEE-eecccCcCHHHHHHHHHHHHHHhh
Q psy8318 228 DSICN-SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHF-TCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 228 ~~~~~-~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~-tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
.++-. ++.+.+.|.+|++||+|+....-....+.+.+.+. ..+.... +||.+++|++++...+.+.+....
T Consensus 264 ~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~---~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 264 NELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA---LGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred HHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh---cCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 33332 35667899999999999543222222333333321 2222111 999999999999999998887664
No 262
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.90 E-value=1.3e-08 Score=92.46 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=36.3
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHH-HHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFD-AVTDVI 297 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~-~i~~~i 297 (313)
...|+++++||.|+....-....+.. .+ ....++.+||+.+.++.++.+ .+.+.+
T Consensus 213 t~KPvI~VlNK~Dl~~~~~~~~~l~~---~~---~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 213 RSKPMVIAANKADIPDAENNISKLRL---KY---PDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred cCCcEEEEEEHHHccChHHHHHHHHh---hC---CCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 45799999999997532110111111 11 234689999999999999887 577665
No 263
>KOG1490|consensus
Probab=98.88 E-value=1.3e-09 Score=101.09 Aligned_cols=132 Identities=20% Similarity=0.294 Sum_probs=96.1
Q ss_pred eecceeEEEEEecCceeeeEecCCCc---ccccccccc-----c-cCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQR---SERKKWIHC-----F-EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~---~~r~~w~~~-----~-~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
+|.++....++++-..|++.||+|-- .+.+..... + .=-.+|+|+.|+|+ .+-.+..+..++|
T Consensus 201 TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe--------~CGySva~QvkLf 272 (620)
T KOG1490|consen 201 TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE--------MCGYSVAAQVKLY 272 (620)
T ss_pred ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh--------hhCCCHHHHHHHH
Confidence 56777778888888999999999942 122111111 1 11368999999997 5578999999999
Q ss_pred HHHHhCCCCCCCcEEEEeecCCcccc-cccCC--cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 228 DSICNSKWFMDTSIILFLNKNDLFQE-KITKS--PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 228 ~~~~~~~~~~~~piilv~NK~Dl~~~-k~~~~--~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
.++ .+.|.+.|.|+|+||+|+..- .+... ++.+... ...++.+..+|..+.+||.+|-...++.++...
T Consensus 273 hsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~---~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 273 HSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTII---DDGNVKVVQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred HHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHH---hccCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence 998 478999999999999997642 22221 2222222 234578999999999999999999998888654
No 264
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.84 E-value=1.1e-08 Score=102.87 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=52.9
Q ss_pred EEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318 166 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL 245 (313)
Q Consensus 166 ~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~ 245 (313)
++.++..+.+|||+|+..+...-...++.+|++|+|+|..+- -..++...+....+ .+.|+++++
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g-----------~~~~t~~~~~~~~~----~~~p~ivvi 145 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG-----------VMPQTETVLRQALK----ENVKPVLFI 145 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC-----------CCccHHHHHHHHHH----cCCCEEEEE
Confidence 455678999999999988877777788999999999998751 11223334444322 346888999
Q ss_pred ecCCccc
Q psy8318 246 NKNDLFQ 252 (313)
Q Consensus 246 NK~Dl~~ 252 (313)
||+|...
T Consensus 146 NKiD~~~ 152 (720)
T TIGR00490 146 NKVDRLI 152 (720)
T ss_pred EChhccc
Confidence 9999864
No 265
>PLN03127 Elongation factor Tu; Provisional
Probab=98.83 E-value=3.7e-08 Score=93.72 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=70.8
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
-|+......++.++.++.+.||+|++.+-+.-..-...+|++++|+|..+- -..+..+.+..+..
T Consensus 110 iTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g-----------~~~qt~e~l~~~~~---- 174 (447)
T PLN03127 110 ITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-----------PMPQTKEHILLARQ---- 174 (447)
T ss_pred ceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC-----------CchhHHHHHHHHHH----
Confidence 344444445556778899999999976544333334569999999998751 11223333333222
Q ss_pred CCCc-EEEEeecCCccccccc----CCcccccCcCCC-CCCCeEEEEeecc---cCcC-------HHHHHHHHHHH
Q psy8318 237 MDTS-IILFLNKNDLFQEKIT----KSPLTVCFPEYT-DQKEIYTHFTCAT---DTSN-------IQFVFDAVTDV 296 (313)
Q Consensus 237 ~~~p-iilv~NK~Dl~~~k~~----~~~l~~~f~~~~-~~~~~~~~~tSA~---~~~~-------v~~~f~~i~~~ 296 (313)
.++| ++++.||+|+..+... ..++.+.+..+. ....+.++++||. +|.| +..+++.+...
T Consensus 175 ~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 175 VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 2468 5788999998642111 112333332211 1234667777765 5555 55666665544
No 266
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.79 E-value=3.7e-08 Score=95.24 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=83.1
Q ss_pred ecceeEEEEEecCceeeeEecCCCcccc------ccccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSER------KKWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS 229 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 229 (313)
|+--.+..+.+++..+++.|.+|.-+.. +.-.+|. .+.|++|-|+|.++ ++.++.+.-+
T Consensus 37 TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn-------------LeRnLyltlQ 103 (653)
T COG0370 37 TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN-------------LERNLYLTLQ 103 (653)
T ss_pred eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch-------------HHHHHHHHHH
Confidence 3344555777788899999999965433 2233343 45799999999886 4556666556
Q ss_pred HHhCCCCCCCcEEEEeecCCccccc---ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 230 ICNSKWFMDTSIILFLNKNDLFQEK---ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 230 ~~~~~~~~~~piilv~NK~Dl~~~k---~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+++ -+.|+++++|+.|..+++ +..+.+++. .++++.+|+|+.|.|++++.+.+.+...
T Consensus 104 LlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~-------LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 104 LLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKL-------LGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred HHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHH-------hCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 654 367999999999987653 222334332 5788999999999999999888876443
No 267
>KOG3886|consensus
Probab=98.77 E-value=1e-08 Score=86.47 Aligned_cols=84 Identities=23% Similarity=0.413 Sum_probs=59.7
Q ss_pred eecceeEEEEEe-cCceeeeEecCCCcccc-----ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH-
Q psy8318 157 KTTGIIETHFTF-KDLHFKMFDVGGQRSER-----KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS- 229 (313)
Q Consensus 157 ~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~r-----~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~- 229 (313)
+|+.+....+.+ ++.-+.+||.|||+.+- ..-.+-|++++++|||+|++. +.++.-+..++.
T Consensus 38 ~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves-----------~e~~~D~~~yqk~ 106 (295)
T KOG3886|consen 38 ATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVES-----------REMEKDFHYYQKC 106 (295)
T ss_pred CcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccc-----------hhhhhhHHHHHHH
Confidence 455555555555 66899999999998533 344567899999999999995 555555555554
Q ss_pred ---HHhCCCCCCCcEEEEeecCCcccc
Q psy8318 230 ---ICNSKWFMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 230 ---~~~~~~~~~~piilv~NK~Dl~~~ 253 (313)
++++ .+...+..+..|+|+...
T Consensus 107 Le~ll~~--SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 107 LEALLQN--SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred HHHHHhc--CCcceEEEEEeechhccc
Confidence 3333 345778889999998754
No 268
>KOG1707|consensus
Probab=98.76 E-value=6.9e-09 Score=97.93 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=74.3
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEEEeecC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIILFLNKN 248 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piilv~NK~ 248 (313)
+...+.|++-....+-.-.+-++.+++|..|++.++ ..+++.....|--++.... ..++|+||||||+
T Consensus 56 vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~----------~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~ 125 (625)
T KOG1707|consen 56 VPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD----------ESTVDRISTKWLPLIRQLFGDYHETPVILVGNKS 125 (625)
T ss_pred CceEEEecccccchhHHHHHHHhhcCEEEEEEecCC----------hHHhhhhhhhhhhhhhcccCCCccCCEEEEeecc
Confidence 335567887544433333566889999999999887 4555554444444444322 2579999999999
Q ss_pred Cccccccc-----CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT-----KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~~-----~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|....... ..++...|++. =.+++|||++-.|+.++|....+.++
T Consensus 126 d~~~~~~~s~e~~~~pim~~f~Ei-----EtciecSA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 126 DNGDNENNSDEVNTLPIMIAFAEI-----ETCIECSALTLANVSELFYYAQKAVI 175 (625)
T ss_pred CCccccccchhHHHHHHHHHhHHH-----HHHHhhhhhhhhhhHhhhhhhhheee
Confidence 97653222 12333444333 14788999999999999998877665
No 269
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.76 E-value=1.5e-08 Score=86.24 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=59.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE--EEEeecC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI--ILFLNKN 248 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi--ilv~NK~ 248 (313)
....+.++.|..-....++ .-++.+|.|+|..++++.. .. . ..+..+ ++++||+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~---------~~----~--------~~qi~~ad~~~~~k~ 147 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIP---------RK----G--------GPGITRSDLLVINKI 147 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhh---------hh----h--------HhHhhhccEEEEEhh
Confidence 4455677777322222222 1257799999999854311 00 0 012233 7889999
Q ss_pred Cccccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+.+. .. ...+.+....+ +....+++|||++|+|+.++|+|+.+..+
T Consensus 148 d~~~~-~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 148 DLAPM-VGADLGVMERDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred hcccc-ccccHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 98742 11 11111222222 13467899999999999999999987653
No 270
>PRK12739 elongation factor G; Reviewed
Probab=98.75 E-value=4.9e-08 Score=98.05 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=61.8
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.-|+-.....+.+++.++.++||+|+..+..-|...++.+|++|+|+|.++- - -......+..+..
T Consensus 58 giti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g----------~-~~qt~~i~~~~~~--- 123 (691)
T PRK12739 58 GITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG----------V-EPQSETVWRQADK--- 123 (691)
T ss_pred CCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC----------C-CHHHHHHHHHHHH---
Confidence 3444555567788999999999999988888888899999999999998861 1 1222344444332
Q ss_pred CCCCcEEEEeecCCcccc
Q psy8318 236 FMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~ 253 (313)
.+.|++++.||+|+..+
T Consensus 124 -~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 124 -YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred -cCCCEEEEEECCCCCCC
Confidence 35799999999998753
No 271
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.71 E-value=2.9e-08 Score=87.16 Aligned_cols=96 Identities=9% Similarity=0.120 Sum_probs=67.2
Q ss_pred ccccccccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcc
Q psy8318 182 RSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPL 260 (313)
Q Consensus 182 ~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l 260 (313)
++++.+...+++++++++.|+|+++ +. ++.....|+..+ .. .++|++||+||+|+..+.....+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~----------p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~~~~~~ 89 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVL----------PELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDEDMEKEQ 89 (245)
T ss_pred cccceEECcccccCCEEEEEEECCC----------CCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHHHHHHH
Confidence 4566777789999999999999997 34 444444444433 22 568999999999986432211122
Q ss_pred cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 261 TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 261 ~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.+.+ ...+..++++||++|+|+.++|+.+.+
T Consensus 90 ~~~~----~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 90 LDIY----RNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHH----HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 2222 224567899999999999999998764
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.69 E-value=1.3e-07 Score=88.39 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=26.5
Q ss_pred ceeeeEecCCCc----cccc---cccccccCCcEEEEEEecCC
Q psy8318 171 LHFKMFDVGGQR----SERK---KWIHCFEGVTAIIFCVALSG 206 (313)
Q Consensus 171 ~~~~i~D~~Gq~----~~r~---~w~~~~~~~~~iifv~dls~ 206 (313)
..+++||++|.. ..+. .....+++|+++++|+|.+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 579999999942 2222 33334889999999999973
No 273
>COG2262 HflX GTPases [General function prediction only]
Probab=98.68 E-value=4e-07 Score=83.28 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=74.3
Q ss_pred EEEEEec-CceeeeEecCCCccccccccc-c-------ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 163 ETHFTFK-DLHFKMFDVGGQRSERKKWIH-C-------FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 163 ~~~~~~~-~~~~~i~D~~Gq~~~r~~w~~-~-------~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
...+... +..+-+-||-|=-..-.-|.- . -..+|.++.|+|.|+ + ...+-.+.-..++..
T Consensus 231 tR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSd----------p-~~~~~~~~v~~vL~e 299 (411)
T COG2262 231 TRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASD----------P-EILEKLEAVEDVLAE 299 (411)
T ss_pred eeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCC----------h-hHHHHHHHHHHHHHH
Confidence 3344444 577788888884222111111 1 245899999999998 3 444444444455554
Q ss_pred CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 234 KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
-.....|+|+++||+|..........+.. . .+ ...++||++|.|++.+.+.|.+.+.
T Consensus 300 l~~~~~p~i~v~NKiD~~~~~~~~~~~~~----~---~~-~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 300 IGADEIPIILVLNKIDLLEDEEILAELER----G---SP-NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred cCCCCCCEEEEEecccccCchhhhhhhhh----c---CC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 44566999999999996543221112211 1 12 4789999999999999998888775
No 274
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=6.2e-08 Score=88.52 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=78.6
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
|--|+.+....|+.....+++.|++|++.|-+.-..-...||+.|+|+|..+. +....-.......|..-+. ..
T Consensus 69 rGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~-efE~g~~~~gQtrEH~~La-~t---- 142 (428)
T COG5256 69 RGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG-EFEAGFGVGGQTREHAFLA-RT---- 142 (428)
T ss_pred cceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC-ccccccccCCchhHHHHHH-Hh----
Confidence 45666667777888888999999999988877777777889999999999862 1000000012222222222 22
Q ss_pred CCCCCcEEEEeecCCcccc---ccc--CCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQE---KIT--KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~---k~~--~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~ 288 (313)
+.-..+|++.||+|...= +.. ..++......+. ....+.+.++||..|+|+.+
T Consensus 143 -lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 143 -LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred -cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 123578999999998641 110 111222211111 22367899999999999854
No 275
>PRK00007 elongation factor G; Reviewed
Probab=98.66 E-value=1.1e-07 Score=95.55 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=56.7
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~ 237 (313)
|+-.....+.+++..+.+.||+|+..+..--....+.+|++|+|+|.++ .-.......+..+.. .
T Consensus 62 ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~-----------g~~~qt~~~~~~~~~----~ 126 (693)
T PRK00007 62 TITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG-----------GVEPQSETVWRQADK----Y 126 (693)
T ss_pred CEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC-----------CcchhhHHHHHHHHH----c
Confidence 3333445677789999999999987665444445678999999999875 112333445555433 3
Q ss_pred CCcEEEEeecCCcccc
Q psy8318 238 DTSIILFLNKNDLFQE 253 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~ 253 (313)
+.|++++.||+|+..+
T Consensus 127 ~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 127 KVPRIAFVNKMDRTGA 142 (693)
T ss_pred CCCEEEEEECCCCCCC
Confidence 5789999999998754
No 276
>KOG1191|consensus
Probab=98.65 E-value=6.8e-07 Score=83.25 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=78.0
Q ss_pred ceeEEEEEecCceeeeEecCCCccccccc---------cccccCCcEEEEEEec--CCcccccccccccccHHHHHHHHH
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERKKW---------IHCFEGVTAIIFCVAL--SGYDSVLAEDEEMNRMIESMKLFD 228 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w---------~~~~~~~~~iifv~dl--s~~d~~~~e~~~~~~l~e~~~~~~ 228 (313)
...+..|++.++++.+.||+|-+..+..- ..-.+.+|.|++|+|. +++ .+-......++
T Consensus 305 Daiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t----------~sd~~i~~~l~ 374 (531)
T KOG1191|consen 305 DAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT----------ESDLKIARILE 374 (531)
T ss_pred hhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc----------ccchHHHHHHH
Confidence 34556778899999999999987633221 1224679999999999 442 22222222222
Q ss_pred HHHh-----CCCCCCCcEEEEeecCCcccc--cccCCcccccCcCCCCCCCeEEEE-eecccCcCHHHHHHHHHHHHHHh
Q psy8318 229 SICN-----SKWFMDTSIILFLNKNDLFQE--KITKSPLTVCFPEYTDQKEIYTHF-TCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 229 ~~~~-----~~~~~~~piilv~NK~Dl~~~--k~~~~~l~~~f~~~~~~~~~~~~~-tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..-. .+...+.|++++.||.|+... .+...++. +.... ......++. +|++++++++.+...+...+...
T Consensus 375 ~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~-~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 375 TEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAE-GRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred HhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccc-cCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 2211 122245799999999998763 11221211 11111 112334444 99999999999998888877644
No 277
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.58 E-value=1.4e-07 Score=89.82 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=71.9
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+.|++|++.+-+-...-...+|++++|+|..+-. ......+.+...+.+ .-.|+++++||+|+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-------~~~qT~ehl~i~~~l------gi~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-------PQPQTSEHLAAVEIM------KLKHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------cchhhHHHHHHHHHc------CCCcEEEEEecccc
Confidence 46889999999877655455567899999999998510 011122222222211 22578999999998
Q ss_pred cccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 251 FQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 251 ~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
...... ..++.+.+..+ ......++++||++|+|+..+++.|.+.+
T Consensus 184 v~~~~~~~~~~ei~~~l~~~-~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGT-IADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhh-ccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 642111 12333333222 12356789999999999999888887644
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.51 E-value=1e-06 Score=90.84 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=72.0
Q ss_pred eeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCccc
Q psy8318 173 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 173 ~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 252 (313)
+.||||+||+.+..+....+..++++++|+|+++-- .....++...+. . .++|+++++||+|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi--------~~qT~e~I~~lk---~----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF--------KPQTIEAINILR---Q----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC--------CHhHHHHHHHHH---H----cCCCEEEEEECCCCcc
Confidence 899999999999887777888999999999988510 122222333222 1 2579999999999853
Q ss_pred -ccccC----------------Ccc-------cccCcCCC-----------CCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 253 -EKITK----------------SPL-------TVCFPEYT-----------DQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 253 -~k~~~----------------~~l-------~~~f~~~~-----------~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
..... .++ ...+.+.. -...+.++++||++|+||.++..++...
T Consensus 593 ~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 593 GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 21110 000 00011110 0235688999999999999999888654
No 279
>KOG1145|consensus
Probab=98.50 E-value=1.2e-06 Score=82.60 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=82.0
Q ss_pred cceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318 159 TGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD 238 (313)
Q Consensus 159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~ 238 (313)
+|-....++ .+.+++|.||+|+.-|..+...=-.-+|.|++||...|- -..+..|+++.- ...+
T Consensus 190 IGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG--------VmpQT~EaIkhA-------k~A~ 253 (683)
T KOG1145|consen 190 IGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG--------VMPQTLEAIKHA-------KSAN 253 (683)
T ss_pred eceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC--------ccHhHHHHHHHH-------HhcC
Confidence 454444445 678999999999999988888777778999999998861 122223333222 2267
Q ss_pred CcEEEEeecCCcccccccC--Ccccc---cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 239 TSIILFLNKNDLFQEKITK--SPLTV---CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k~~~--~~l~~---~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.|+++..||+|.+++...+ .++.. ...++ .-...+.++||++|+|+..+-+.+.-..
T Consensus 254 VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~--GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 254 VPIVVAINKIDKPGANPEKVKRELLSQGIVVEDL--GGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHc--CCceeEEEeecccCCChHHHHHHHHHHH
Confidence 9999999999988753221 12211 11222 2457889999999999998887776544
No 280
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.49 E-value=3.9e-07 Score=93.31 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=51.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+..++++||+|+..|-.--....+.+|++|+|+|..+ .-...+...+..... .+.|++++.||+|
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~-----------Gv~~~t~~~~~~~~~----~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------GVCVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC-----------CCcccHHHHHHHHHH----CCCCEEEEEECCc
Confidence 5788999999998887666667789999999999886 111223445555543 3689999999999
Q ss_pred cc
Q psy8318 250 LF 251 (313)
Q Consensus 250 l~ 251 (313)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 87
No 281
>PTZ00416 elongation factor 2; Provisional
Probab=98.49 E-value=4.3e-07 Score=92.87 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=50.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+..+.+.||+|+..+-.--...++.+|++|+|+|..+ .-...+...+..+.. .+.|+++|.||+|
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~-----------g~~~~t~~~~~~~~~----~~~p~iv~iNK~D 155 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE-----------GVCVQTETVLRQALQ----ERIRPVLFINKVD 155 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC-----------CcCccHHHHHHHHHH----cCCCEEEEEEChh
Confidence 5679999999998776666667889999999999886 112223455555544 3579999999999
Q ss_pred cc
Q psy8318 250 LF 251 (313)
Q Consensus 250 l~ 251 (313)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 87
No 282
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.49 E-value=1.6e-07 Score=79.25 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=62.0
Q ss_pred ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCccccc
Q psy8318 184 ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVC 263 (313)
Q Consensus 184 ~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~ 263 (313)
++..|..++++++++++|+|+++.+. ...+.+ . . ...+.|+++|+||+|+..+......+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~---------~~~~~l---~---~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG---------SLIPRL---R---L--FGGNNPVILVGNKIDLLPKDKNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC---------ccchhH---H---H--hcCCCcEEEEEEchhcCCCCCCHHHHHHH
Confidence 67889999999999999999997431 111111 1 1 12457999999999986432111111111
Q ss_pred C-----cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 264 F-----PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 264 f-----~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
. ... ......++++||++|.|+.++++++.+.+
T Consensus 87 ~~~~~~~~~-~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 87 LRAKAAAGL-GLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred HHHHHHhhc-CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 1 101 00112478999999999999999998865
No 283
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.47 E-value=3.2e-07 Score=78.89 Aligned_cols=128 Identities=13% Similarity=0.235 Sum_probs=71.5
Q ss_pred ecceeEEEEEecCceeeeEecCCCcccc-------cccc----ccccCCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSER-------KKWI----HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL 226 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~----~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~ 226 (313)
|..+........+..+.++||+|--.-+ +... .+..+.+++|||+++..| ...-...++.
T Consensus 36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~---------t~~~~~~l~~ 106 (212)
T PF04548_consen 36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF---------TEEDREVLEL 106 (212)
T ss_dssp -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHH
T ss_pred ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc---------hHHHHHHHHH
Confidence 3445555557788999999999942111 1111 134679999999999875 3455667777
Q ss_pred HHHHHhCCCCCCCcEEEEeecCCcccccc-----c---CCcccccCcCCCCCCCeEEEEeecc------cCcCHHHHHHH
Q psy8318 227 FDSICNSKWFMDTSIILFLNKNDLFQEKI-----T---KSPLTVCFPEYTDQKEIYTHFTCAT------DTSNIQFVFDA 292 (313)
Q Consensus 227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k~-----~---~~~l~~~f~~~~~~~~~~~~~tSA~------~~~~v~~~f~~ 292 (313)
+.+++..... ..++|+++..|-..... . ...+.+.+..+ ..+ ++..... +...+.++++.
T Consensus 107 l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c-~~R---~~~f~n~~~~~~~~~~qv~~Ll~~ 180 (212)
T PF04548_consen 107 LQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC-GGR---YHVFNNKTKDKEKDESQVSELLEK 180 (212)
T ss_dssp HHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT-TTC---EEECCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc-CCE---EEEEeccccchhhhHHHHHHHHHH
Confidence 7777765433 35788888888654321 1 01122223323 222 2222222 34568888888
Q ss_pred HHHHHHHh
Q psy8318 293 VTDVIIKA 300 (313)
Q Consensus 293 i~~~i~~~ 300 (313)
|-+.+..+
T Consensus 181 ie~mv~~n 188 (212)
T PF04548_consen 181 IEEMVQEN 188 (212)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 87777655
No 284
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.6e-06 Score=81.83 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=79.9
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.-.+.|.||+||+-|..+...=.+=+|.+|+|++..|- -..+..|+.+..+. .++|++++.||+
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG--------v~pQTiEAI~hak~-------a~vP~iVAiNKi 117 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG--------VMPQTIEAINHAKA-------AGVPIVVAINKI 117 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC--------cchhHHHHHHHHHH-------CCCCEEEEEecc
Confidence 346899999999999998888877889999999999972 13344444443332 579999999999
Q ss_pred Cccccccc--CCccccc--CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT--KSPLTVC--FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~~--~~~l~~~--f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|....... ..++.++ .++- -.+...+.++||++|+|+.+++..+.-...
T Consensus 118 Dk~~~np~~v~~el~~~gl~~E~-~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 118 DKPEANPDKVKQELQEYGLVPEE-WGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred cCCCCCHHHHHHHHHHcCCCHhh-cCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 98753111 1112111 1111 124478899999999999999988875543
No 285
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.40 E-value=9.3e-07 Score=81.78 Aligned_cols=123 Identities=14% Similarity=0.192 Sum_probs=81.6
Q ss_pred eeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 161 IIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 161 ~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
-....+.|+++++++.||+|+-.|.---...+.=+|+|+++||..+ -.+..+.-.+...+. .+.+
T Consensus 58 aKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~----~gL~ 122 (603)
T COG1217 58 AKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALA----LGLK 122 (603)
T ss_pred eccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHH----cCCC
Confidence 3445678899999999999998877666666777999999999997 344444545555544 2456
Q ss_pred EEEEeecCCcccccccC--CcccccCcCCC---CCCCeEEEEeecccCc----------CHHHHHHHHHHHHH
Q psy8318 241 IILFLNKNDLFQEKITK--SPLTVCFPEYT---DQKEIYTHFTCATDTS----------NIQFVFDAVTDVII 298 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~--~~l~~~f~~~~---~~~~~~~~~tSA~~~~----------~v~~~f~~i~~~i~ 298 (313)
-|||.||+|.+.++-.. .+.-+.|-+.. ....+++.+.||..|. ++..+|+.|.+.+-
T Consensus 123 PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 123 PIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred cEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 67789999988764221 12222232221 2245678888887653 56677777766553
No 286
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.39 E-value=1.2e-06 Score=79.88 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=65.9
Q ss_pred ecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 168 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 168 ~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+..+.|.||+|-.... .....-+|.+++|.+... ...+..... .++. ..-++|.||
T Consensus 146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~----------gd~iq~~k~---gi~E------~aDIiVVNK 203 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGA----------GDELQGIKK---GIME------LADLIVINK 203 (332)
T ss_pred ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCc----------hHHHHHHHh---hhhh------hhheEEeeh
Confidence 357889999999975222 224567999999976333 222222221 1221 223799999
Q ss_pred CCcccccc---cCCcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 248 NDLFQEKI---TKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 248 ~Dl~~~k~---~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.|+....- ...++...+.... ......++.+||+++.||.+++++|.+.+.
T Consensus 204 aDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99764321 1122333332110 112236889999999999999999998764
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.39 E-value=9.7e-07 Score=89.26 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=50.4
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
++..+.++||+|+..+...-....+.+|++|+|+|..+ .-.......+...... +.|.+++.||+
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~-----------g~~~~t~~~~~~~~~~----~~~~iv~iNK~ 149 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE-----------GVMPQTETVLRQALRE----RVKPVLFINKV 149 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC-----------CCCccHHHHHHHHHHc----CCCeEEEEECc
Confidence 46789999999998877666667889999999999875 1122344445543332 35789999999
Q ss_pred Cccc
Q psy8318 249 DLFQ 252 (313)
Q Consensus 249 Dl~~ 252 (313)
|...
T Consensus 150 D~~~ 153 (731)
T PRK07560 150 DRLI 153 (731)
T ss_pred hhhc
Confidence 9763
No 288
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.34 E-value=2.9e-07 Score=85.38 Aligned_cols=99 Identities=12% Similarity=0.176 Sum_probs=64.3
Q ss_pred CccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcc
Q psy8318 181 QRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPL 260 (313)
Q Consensus 181 q~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l 260 (313)
++.++.+...++.++++|++|+|+.+++. ++. ..+.+.+ .+.|+++|+||+|+..+......+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~---------s~~---~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG---------SLI---PELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC---------Ccc---HHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHH
Confidence 45677777888899999999999988532 211 2222222 257999999999987543322222
Q ss_pred cccCcCCCCCCCe---EEEEeecccCcCHHHHHHHHHHH
Q psy8318 261 TVCFPEYTDQKEI---YTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 261 ~~~f~~~~~~~~~---~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
.+.+.++....++ .++.+||++|.|+.++|+.+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2221111011222 47899999999999999998764
No 289
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.33 E-value=4.4e-06 Score=75.68 Aligned_cols=106 Identities=12% Similarity=0.032 Sum_probs=62.3
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.++.+.|.||+|-.. ........+|.++++.+... . .+.......+ .+.|.++++||+
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~----------~---~el~~~~~~l------~~~~~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGT----------G---DDLQGIKAGL------MEIADIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCc----------c---HHHHHHHHHH------hhhccEEEEEcc
Confidence 568899999998531 12234566777777743322 1 2222222222 346789999999
Q ss_pred Cccccccc---CC----cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT---KS----PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 249 Dl~~~k~~---~~----~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
|+....-. .. .+....... ......++.+||++++|+.++++++.+..
T Consensus 183 Dl~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 183 DGEGATNVTIARLMLALALEEIRRRE-DGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred cccchhHHHHHHHHHHHHHhhccccc-cCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 98753210 00 111111111 11223579999999999999999998864
No 290
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.33 E-value=3.5e-06 Score=74.05 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred hhhccceEEEEcCCCCchhHHHHHH
Q psy8318 6 WQEREVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 6 ~~~~~~killlG~~~sGKst~~kq~ 30 (313)
.....++|+++|.+|+||||+++.+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaL 51 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSI 51 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHH
Confidence 4556799999999999999999885
No 291
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=2e-06 Score=79.84 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=82.3
Q ss_pred eeeecceeEEEEEe-----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318 155 RVKTTGIIETHFTF-----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS 229 (313)
Q Consensus 155 ~~~T~g~~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 229 (313)
|--|+-.+...+.| ..+.++++||+||..|.---...+..|.+.|+|||.+. --.-+-.-..+..
T Consensus 55 RGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQ----------GveAQTlAN~YlA 124 (603)
T COG0481 55 RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ----------GVEAQTLANVYLA 124 (603)
T ss_pred cCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECcc----------chHHHHHHHHHHH
Confidence 33444434444444 23889999999999887666677889999999999995 1111111222322
Q ss_pred HHhCCCCCCCcEEEEeecCCccccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 230 ICNSKWFMDTSIILFLNKNDLFQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 230 ~~~~~~~~~~piilv~NK~Dl~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+ . .+.-++-|+||+|++.+... ..++.+.+.- ..-....+||++|.||.++++.|.+.+-
T Consensus 125 l-e----~~LeIiPViNKIDLP~Adpervk~eIe~~iGi----d~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 125 L-E----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGI----DASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred H-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCC----CcchheeEecccCCCHHHHHHHHHhhCC
Confidence 2 2 35678999999999876322 2244443321 1124678999999999999999988764
No 292
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.27 E-value=1.3e-05 Score=71.26 Aligned_cols=124 Identities=13% Similarity=0.110 Sum_probs=75.2
Q ss_pred EEEEEecCceeeeEecCCC----c---cccccccccccCCcEEEEEEecCCccc----cccc--c---------------
Q psy8318 163 ETHFTFKDLHFKMFDVGGQ----R---SERKKWIHCFEGVTAIIFCVALSGYDS----VLAE--D--------------- 214 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq----~---~~r~~w~~~~~~~~~iifv~dls~~d~----~~~e--~--------------- 214 (313)
..-++|++.++|+.|++|- . ...+.-....++||.|++|+|+..-.. ...| +
T Consensus 102 PG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~ 181 (365)
T COG1163 102 PGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIK 181 (365)
T ss_pred cceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEE
Confidence 3356779999999999973 1 122455667899999999999985221 0000 0
Q ss_pred ---------ccc-----ccHHHHHHHHH---------------------HHHhCCCCCCCcEEEEeecCCcccccccCCc
Q psy8318 215 ---------EEM-----NRMIESMKLFD---------------------SICNSKWFMDTSIILFLNKNDLFQEKITKSP 259 (313)
Q Consensus 215 ---------~~~-----~~l~e~~~~~~---------------------~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~ 259 (313)
..+ -........+. ..+... ..-+|-+.+.||.|+... -....
T Consensus 182 kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~~-e~~~~ 259 (365)
T COG1163 182 KKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN-RVYKPALYVVNKIDLPGL-EELER 259 (365)
T ss_pred EeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhc-ceeeeeEEEEecccccCH-HHHHH
Confidence 000 11111222222 222211 234799999999998762 11222
Q ss_pred ccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 260 LTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 260 l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+.+ ...++++||..+.|++++.+.+.+.+
T Consensus 260 l~~---------~~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 260 LAR---------KPNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred HHh---------ccceEEEecccCCCHHHHHHHHHHhh
Confidence 222 12578899999999999998888765
No 293
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.24 E-value=8e-06 Score=68.20 Aligned_cols=110 Identities=9% Similarity=0.222 Sum_probs=63.3
Q ss_pred eeeEecCCC------ccccccccc----ccc---CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318 173 FKMFDVGGQ------RSERKKWIH----CFE---GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT 239 (313)
Q Consensus 173 ~~i~D~~Gq------~~~r~~w~~----~~~---~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~ 239 (313)
+.+.|++|= ...+..|.. |++ +-.+++.++|+-.. ....+ .+.++-+ .. .+.
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~---------~~~~D--~em~~~l-~~---~~i 136 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP---------PKDLD--REMIEFL-LE---LGI 136 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC---------CcHHH--HHHHHHH-HH---cCC
Confidence 888999982 344556644 443 35677888887752 11111 1233222 22 468
Q ss_pred cEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 240 SIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 240 piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|++|++||+|.....-.. ..+.+.+........+ +...|+..+.|++++-..|...+.
T Consensus 137 ~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~-~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 137 PVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW-VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce-EEEEecccccCHHHHHHHHHHHhh
Confidence 999999999954421111 1222222212111223 778889999999888888777654
No 294
>KOG1144|consensus
Probab=98.23 E-value=3.6e-06 Score=81.71 Aligned_cols=123 Identities=18% Similarity=0.148 Sum_probs=85.1
Q ss_pred eeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCccc
Q psy8318 173 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 173 ~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 252 (313)
+.++||+|+++|..+....-.-|+.+|.|+|+..-= -....+++.++.. +++||||.+||+|.+-
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl--------epqtiESi~lLR~-------rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL--------EPQTIESINLLRM-------RKTPFIVALNKIDRLY 606 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccC--------CcchhHHHHHHHh-------cCCCeEEeehhhhhhc
Confidence 678899999999999888888899999999998521 1334455555432 5799999999999642
Q ss_pred c--cccCCcccccCc--------CCC-------------------------CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 253 E--KITKSPLTVCFP--------EYT-------------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 253 ~--k~~~~~l~~~f~--------~~~-------------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
. .....++.+.+. +|. ...-+...+|||..|+||-+++-||.+.-
T Consensus 607 gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 607 GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 1 112222222111 111 12346788999999999999999999877
Q ss_pred HHhhhhhcCCccc
Q psy8318 298 IKANLKDCGIREE 310 (313)
Q Consensus 298 ~~~~~~~~~~~~~ 310 (313)
.....+.+-..+.
T Consensus 687 Qk~m~~kl~y~~e 699 (1064)
T KOG1144|consen 687 QKTMVEKLAYVDE 699 (1064)
T ss_pred HHHHHHHHhhhhh
Confidence 7666666554443
No 295
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.21 E-value=7.4e-06 Score=70.08 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=38.3
Q ss_pred CCcEEEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 238 DTSIILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
..|.++++||+|+..+.- ....+.+.+... .....++++||++|.|+.++|+|+.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~--~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKI--NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999864211 111222222212 134679999999999999999999874
No 296
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.20 E-value=1.6e-06 Score=67.16 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=48.0
Q ss_pred ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCC
Q psy8318 188 WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEY 267 (313)
Q Consensus 188 w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~ 267 (313)
...+++++++++.|++.++ .+++... |...+... .-.+.|+++++||.|+..+. ++...
T Consensus 40 ~~~~~~s~~~~~~v~~~~~----------~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~----~~~~~---- 98 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDD----------RDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER----QVATE---- 98 (124)
T ss_pred cccccCCCCEEEEEEEccC----------HHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC----cCCHH----
Confidence 4556788899999999887 5555432 44443332 22458899999999975431 11110
Q ss_pred CCCCCeEEEEeecccCcCHH
Q psy8318 268 TDQKEIYTHFTCATDTSNIQ 287 (313)
Q Consensus 268 ~~~~~~~~~~tSA~~~~~v~ 287 (313)
....++++||+++.|+.
T Consensus 99 ---~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 99 ---EGLEFAETSAKTPEEGE 115 (124)
T ss_pred ---HHHHHHHHhCCCcchhh
Confidence 11234578999999984
No 297
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.16 E-value=1.1e-05 Score=72.56 Aligned_cols=75 Identities=8% Similarity=0.170 Sum_probs=43.1
Q ss_pred EecCceeeeEecCCCcccccc---ccccc------cCCcEEEEEEecCCcccccccccccccH-HHHHHHHHHHHhCCCC
Q psy8318 167 TFKDLHFKMFDVGGQRSERKK---WIHCF------EGVTAIIFCVALSGYDSVLAEDEEMNRM-IESMKLFDSICNSKWF 236 (313)
Q Consensus 167 ~~~~~~~~i~D~~Gq~~~r~~---w~~~~------~~~~~iifv~dls~~d~~~~e~~~~~~l-~e~~~~~~~~~~~~~~ 236 (313)
..++.++++|||+|....... ..... .+.|++|||.+++... .... ...++.+...+....
T Consensus 82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R--------~~~~DkqlLk~Iqe~FG~~i- 152 (313)
T TIGR00991 82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR--------VDTLDGQVIRAITDSFGKDI- 152 (313)
T ss_pred EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc--------CCHHHHHHHHHHHHHhhhhh-
Confidence 347889999999997543211 11111 2689999997766410 1111 223444444443221
Q ss_pred CCCcEEEEeecCCcc
Q psy8318 237 MDTSIILFLNKNDLF 251 (313)
Q Consensus 237 ~~~piilv~NK~Dl~ 251 (313)
..+.+|++|+.|..
T Consensus 153 -w~~~IVVfTh~d~~ 166 (313)
T TIGR00991 153 -WRKSLVVLTHAQFS 166 (313)
T ss_pred -hccEEEEEECCccC
Confidence 24789999999954
No 298
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.15 E-value=1.3e-05 Score=69.58 Aligned_cols=96 Identities=11% Similarity=0.129 Sum_probs=54.4
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-EEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-IILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-iilv~NK 247 (313)
++.++.++|++|.- .... ...+.++++++|+|.+.- .. .....++..+ .. .+.| +++|+||
T Consensus 81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~----------~~-~~~~~i~~~l-~~---~g~p~vi~VvnK 142 (225)
T cd01882 81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFG----------FE-METFEFLNIL-QV---HGFPRVMGVLTH 142 (225)
T ss_pred CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcC----------CC-HHHHHHHHHH-HH---cCCCeEEEEEec
Confidence 56788999999864 2222 235789999999998751 11 1122233322 22 2356 4559999
Q ss_pred CCccccc--cc--CCcccccCc-CCCCCCCeEEEEeecccCc
Q psy8318 248 NDLFQEK--IT--KSPLTVCFP-EYTDQKEIYTHFTCATDTS 284 (313)
Q Consensus 248 ~Dl~~~k--~~--~~~l~~~f~-~~~~~~~~~~~~tSA~~~~ 284 (313)
.|+..+. .. ...+.+.+. ++ - ....++++||++.-
T Consensus 143 ~D~~~~~~~~~~~~~~l~~~~~~~~-~-~~~ki~~iSa~~~~ 182 (225)
T cd01882 143 LDLFKKNKTLRKTKKRLKHRFWTEV-Y-QGAKLFYLSGIVHG 182 (225)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhh-C-CCCcEEEEeeccCC
Confidence 9986321 11 123333221 11 1 23478999999864
No 299
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.11 E-value=2.4e-06 Score=69.53 Aligned_cols=94 Identities=11% Similarity=0.154 Sum_probs=59.4
Q ss_pred cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccC
Q psy8318 185 RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCF 264 (313)
Q Consensus 185 r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f 264 (313)
++++.+..+++|.+|+|+|.++.. .. ....+. ..+.. .+.|+++++||+|+..+... .......
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~----------~~-~~~~l~-~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~ 66 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPE----------LT-RSRKLE-RYVLE---LGKKLLIVLNKADLVPKEVL-EKWKSIK 66 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCc----------cc-CCHHHH-HHHHh---CCCcEEEEEEhHHhCCHHHH-HHHHHHH
Confidence 566778888999999999987621 10 011121 11221 35799999999998542111 1111111
Q ss_pred cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 265 PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 265 ~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
...+..++++||+++.|+.++++.+.+.+.
T Consensus 67 ----~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 67 ----ESEGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred ----HhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 112345789999999999999999987653
No 300
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.4e-05 Score=73.77 Aligned_cols=76 Identities=20% Similarity=0.371 Sum_probs=60.1
Q ss_pred eEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 162 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
....|+|.+..+++.||+|++.+..-...-+..+|+++.|+|.+- ---..++++|+ +|. ++++||
T Consensus 72 SVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK-----------GiE~qT~KLfe-Vcr---lR~iPI 136 (528)
T COG4108 72 SVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-----------GIEPQTLKLFE-VCR---LRDIPI 136 (528)
T ss_pred eEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc-----------CccHHHHHHHH-HHh---hcCCce
Confidence 456788999999999999999887766666778999999999984 33345566664 433 478999
Q ss_pred EEEeecCCccc
Q psy8318 242 ILFLNKNDLFQ 252 (313)
Q Consensus 242 ilv~NK~Dl~~ 252 (313)
+=+.||.|...
T Consensus 137 ~TFiNKlDR~~ 147 (528)
T COG4108 137 FTFINKLDREG 147 (528)
T ss_pred EEEeecccccc
Confidence 99999999754
No 301
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.06 E-value=1.6e-05 Score=65.98 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=58.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh-CCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN-SKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~-~~~~~~~piilv~NK~D 249 (313)
..+-|.+.+|.-.-+ ..+.-+.+.-|+|+|.+.-+... .+ .|...+ .=++|.||.|
T Consensus 97 ~Dll~iEs~GNL~~~---~sp~L~d~~~v~VidvteGe~~P-------------------~K~gP~i~~-aDllVInK~D 153 (202)
T COG0378 97 LDLLFIESVGNLVCP---FSPDLGDHLRVVVIDVTEGEDIP-------------------RKGGPGIFK-ADLLVINKTD 153 (202)
T ss_pred CCEEEEecCcceecc---cCcchhhceEEEEEECCCCCCCc-------------------ccCCCceeE-eeEEEEehHH
Confidence 456677888832211 12223344779999999732110 01 222222 3478899999
Q ss_pred cccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+... ...++...-.+.. -+....++++|+++|+|++++++|+....
T Consensus 154 La~~--v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 154 LAPY--VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred hHHH--hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 8653 1111111100000 12345789999999999999999987654
No 302
>KOG0458|consensus
Probab=98.05 E-value=4.2e-05 Score=72.87 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=77.4
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.-|..+-...|+-....+++.|.+|+..|-.--..-...+|+.++|+|.+- +.....-.......|-..++..+
T Consensus 240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L----- 313 (603)
T KOG0458|consen 240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL----- 313 (603)
T ss_pred ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc-----
Confidence 334444455666677899999999988776544444556899999999873 22111111234555555555444
Q ss_pred CCCCcEEEEeecCCccc---ccc--cCCcccccC---cCCCCCCCeEEEEeecccCcCHHH
Q psy8318 236 FMDTSIILFLNKNDLFQ---EKI--TKSPLTVCF---PEYTDQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~---~k~--~~~~l~~~f---~~~~~~~~~~~~~tSA~~~~~v~~ 288 (313)
.-..++++.||+|+-+ ++. ....+..++ ..| .+..+.+.+||+..|+|+..
T Consensus 314 -gi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf-~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 314 -GISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGF-KESSVKFIPISGLSGENLIK 372 (603)
T ss_pred -CcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCc-ccCCcceEecccccCCcccc
Confidence 2467899999999753 111 111222222 223 34567899999999999753
No 303
>PRK00098 GTPase RsgA; Reviewed
Probab=98.03 E-value=7.2e-06 Score=74.17 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=54.6
Q ss_pred ccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCC
Q psy8318 192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQ 270 (313)
Q Consensus 192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~ 270 (313)
..++|.+++|+|+++ +....... .++..+ .. .++|+++|+||+|+...+......... + ..
T Consensus 78 aaniD~vllV~d~~~----------p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~---~-~~ 139 (298)
T PRK00098 78 AANVDQAVLVFAAKE----------PDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLAL---Y-RA 139 (298)
T ss_pred eecCCEEEEEEECCC----------CCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHH---H-HH
Confidence 389999999999986 22222222 222222 22 468999999999985322111112121 1 22
Q ss_pred CCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 271 KEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 271 ~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.++.++++||+++.|+.++++.+..
T Consensus 140 ~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 140 IGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred CCCeEEEEeCCCCccHHHHHhhccC
Confidence 3457899999999999999988753
No 304
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3e-05 Score=77.18 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=62.9
Q ss_pred eeeecceeEEEEEecC-ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 155 RVKTTGIIETHFTFKD-LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
|.-|+.....++.+++ ..++++||+||-.|..--..-.+-+|+++.|+|..+ --...+...|.+...
T Consensus 59 RGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-----------GV~~QTEtv~rqa~~- 126 (697)
T COG0480 59 RGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-----------GVEPQTETVWRQADK- 126 (697)
T ss_pred cCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-----------CeeecHHHHHHHHhh-
Confidence 3445544555667775 999999999998887777777788999999999986 233344556666544
Q ss_pred CCCCCCcEEEEeecCCcccc
Q psy8318 234 KWFMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~~ 253 (313)
.++|.++|.||+|....
T Consensus 127 ---~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 127 ---YGVPRILFVNKMDRLGA 143 (697)
T ss_pred ---cCCCeEEEEECcccccc
Confidence 46899999999997654
No 305
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.95 E-value=1.3e-05 Score=52.85 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=32.5
Q ss_pred CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 195 VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 195 ~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.++|+|++|+|+ .+-.++++-..+|+++. +.+.+.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se--------~CGysie~Q~~L~~~ik--~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSE--------QCGYSIEEQLSLFKEIK--PLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT---------TTSS-HHHHHHHHHHHH--HHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCC--------CCCCCHHHHHHHHHHHH--HHcCCCCEEEEEeccC
Confidence 578999999997 34678899999999985 4577899999999998
No 306
>KOG3887|consensus
Probab=97.94 E-value=4.4e-05 Score=65.23 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=71.4
Q ss_pred ceeeeEecCCCccccc-c--ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC--CCCCCCcEEEEe
Q psy8318 171 LHFKMFDVGGQRSERK-K--WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS--KWFMDTSIILFL 245 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~-~--w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~--~~~~~~piilv~ 245 (313)
+.+++||.+||-.+=. - ....|+++.++|||+|.-+ ...+++.-+...+.. +...++.+=++.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd------------dy~eala~L~~~v~raykvNp~in~EVfi 142 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD------------DYMEALARLHMTVERAYKVNPNINFEVFI 142 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH------------HHHHHHHHHHHHhhheeecCCCceEEEEE
Confidence 6789999999965322 1 2335899999999999875 344444444333322 233567888999
Q ss_pred ecCCcccccccCC---cccc----cCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 246 NKNDLFQEKITKS---PLTV----CFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 246 NK~Dl~~~k~~~~---~l~~----~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.|.|...+....+ .+.+ .+.+.. .+-.+.+|.||..+ -.|-++|..+.+.++.
T Consensus 143 HKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 143 HKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred EeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc-hHHHHHHHHHHHHHhh
Confidence 9999765422211 1111 112221 23456777787665 5688888888877653
No 307
>PRK12289 GTPase RsgA; Reviewed
Probab=97.94 E-value=1.4e-05 Score=73.73 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=58.0
Q ss_pred cccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCc
Q psy8318 187 KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFP 265 (313)
Q Consensus 187 ~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~ 265 (313)
+....+.++|.+++|+|+.+ +. .......++... . ..++|++||+||+|+..... .....+.+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~----------p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~-~~~~~~~~- 145 (352)
T PRK12289 82 LDRPPVANADQILLVFALAE----------PPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTE-QQQWQDRL- 145 (352)
T ss_pred eechhhhcCCEEEEEEECCC----------CCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHH-HHHHHHHH-
Confidence 34456899999999999986 22 111112233222 1 24689999999999864211 11111222
Q ss_pred CCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 266 EYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 266 ~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
...++.++++||+++.|+.++++++...
T Consensus 146 ---~~~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 146 ---QQWGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred ---HhcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 2234568999999999999999988653
No 308
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.92 E-value=1.7e-05 Score=64.65 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=54.8
Q ss_pred ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318 192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK 271 (313)
Q Consensus 192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~ 271 (313)
++++|.+++|+|.++.. ...- ..+...+.. ...+.|+++|+||+|+..+.. +......+....
T Consensus 6 l~~aD~il~VvD~~~p~--------~~~~----~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~----~~~~~~~~~~~~ 68 (157)
T cd01858 6 IDSSDVVIQVLDARDPM--------GTRC----KHVEEYLKK-EKPHKHLIFVLNKCDLVPTWV----TARWVKILSKEY 68 (157)
T ss_pred hhhCCEEEEEEECCCCc--------cccC----HHHHHHHHh-ccCCCCEEEEEEchhcCCHHH----HHHHHHHHhcCC
Confidence 57899999999988621 1111 122222222 123579999999999864321 112222221112
Q ss_pred CeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 272 EIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 272 ~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
....+.+||+.+.|+.++.+++.+.+
T Consensus 69 ~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cEEEEEeeccccccHHHHHHHHHHHH
Confidence 33467899999999999999987654
No 309
>KOG3905|consensus
Probab=97.92 E-value=0.00013 Score=64.96 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=40.5
Q ss_pred CCcEEEEeecCCcccccccCCccc--------ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 238 DTSIILFLNKNDLFQEKITKSPLT--------VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~k~~~~~l~--------~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
++|++||.+|+|...--....+.. .++..|--..+...++||++...|++-+.++|.+.+..
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 359999999999743111111211 11111112346678999999999999999999987653
No 310
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.90 E-value=0.00012 Score=65.25 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=37.0
Q ss_pred CCcEEEEeecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 238 DTSIILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
..+-++++||+|+.... .....+.+.+... .....++.+||++|+|++++.+||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l--np~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV--NPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh--CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35678899999986420 0111121211111 134679999999999999999999773
No 311
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.89 E-value=7.8e-05 Score=67.14 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=68.8
Q ss_pred cceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH--HHHHHHhCCCC
Q psy8318 159 TGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK--LFDSICNSKWF 236 (313)
Q Consensus 159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~--~~~~~~~~~~~ 236 (313)
+.+-...|.-...+|-+-||+|++.+.+.-..=-+.|+..|.++|.-. .-++.+.. ...+++
T Consensus 74 IDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-----------Gvl~QTrRHs~I~sLL----- 137 (431)
T COG2895 74 IDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-----------GVLEQTRRHSFIASLL----- 137 (431)
T ss_pred EEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-----------hhHHHhHHHHHHHHHh-----
Confidence 333334444467899999999999876654444566899999999853 33333332 222222
Q ss_pred CCCcEEEEeecCCcccccc-cCCcccccCcCCC---CCCCeEEEEeecccCcCHH
Q psy8318 237 MDTSIILFLNKNDLFQEKI-TKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQ 287 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~-~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~ 287 (313)
.=..++|..||+||.+=.- .-..+...|-.|. .-....+.++||..|+||.
T Consensus 138 GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 138 GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2257899999999865211 1112222221121 2234578999999999984
No 312
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.76 E-value=0.00023 Score=68.02 Aligned_cols=62 Identities=10% Similarity=0.220 Sum_probs=41.4
Q ss_pred CcEEEEeecCCcccccccCC-c--------ccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 239 TSIILFLNKNDLFQEKITKS-P--------LTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k~~~~-~--------l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+|++||++|.|.... +... . +.+++..+--..+...++||++...|+.-+++.|.+.+...-
T Consensus 197 ipi~VV~tksD~~~~-Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 197 IPIVVVCTKSDKIET-LEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred cceEEEEecccHHHH-HhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence 699999999997542 2111 1 111111111235777889999999999999999888876543
No 313
>KOG0705|consensus
Probab=97.74 E-value=4.7e-05 Score=71.95 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=80.4
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+..-+.+.|.||.. -..|-..++++||||.+-+ .++++....+...+.........|+++++.+.
T Consensus 75 qs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d----------~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd 139 (749)
T KOG0705|consen 75 QSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVED----------EQSFQAVQALAHEMSSYRNISDLPLILVGTQD 139 (749)
T ss_pred cceEeeeecccCCc-----hhhhhhhccceEEEEEecc----------ccCHHHHHHHHhhcccccccccchHHhhcCcc
Confidence 55778888999842 2345577999999999998 67777777777776554445668889888876
Q ss_pred CcccccccCCcccc-cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTV-CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~-~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
-+.. +........ .+......+.+.++++||.+|.++..+|..++..++..
T Consensus 140 ~iS~-~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 140 HISA-KRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhhc-ccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 4433 222221111 11111133678899999999999999999999887654
No 314
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.72 E-value=0.00012 Score=67.62 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=33.1
Q ss_pred ceeeeEecCCCccccccccccc-----cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCF-----EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL 245 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~-----~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~ 245 (313)
-.+.+||++|-..-+.....|+ ...|.+|.+.+ .++.+.-..+...+.. .+.|+++|-
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s--------------~rf~~ndv~La~~i~~---~gK~fyfVR 148 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS--------------ERFTENDVQLAKEIQR---MGKKFYFVR 148 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES--------------SS--HHHHHHHHHHHH---TT-EEEEEE
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC--------------CCCchhhHHHHHHHHH---cCCcEEEEE
Confidence 4689999999765554455554 45676665443 3444444444443343 468999999
Q ss_pred ecCCc
Q psy8318 246 NKNDL 250 (313)
Q Consensus 246 NK~Dl 250 (313)
+|+|.
T Consensus 149 TKvD~ 153 (376)
T PF05049_consen 149 TKVDS 153 (376)
T ss_dssp --HHH
T ss_pred ecccc
Confidence 99995
No 315
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.69 E-value=6.7e-05 Score=67.51 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=56.4
Q ss_pred cccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCC
Q psy8318 191 CFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD 269 (313)
Q Consensus 191 ~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~ 269 (313)
.+.++|.+++|+|+.+ +. ++.....++..+.. .++|+++|+||+|+..+. ........ + .
T Consensus 75 i~anvD~vllV~d~~~----------p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~-~~~~~~~~---~-~ 135 (287)
T cd01854 75 IAANVDQLVIVVSLNE----------PFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE-EEELELVE---A-L 135 (287)
T ss_pred EEEeCCEEEEEEEcCC----------CCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH-HHHHHHHH---H-H
Confidence 4789999999999986 33 33333334433322 368999999999986531 10011111 1 1
Q ss_pred CCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 270 QKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 270 ~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..+..++++||+++.|+.+++.++..
T Consensus 136 ~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 ALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred hCCCeEEEEECCCCccHHHHHhhhcc
Confidence 23457889999999999999888764
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.61 E-value=0.00021 Score=62.40 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=43.0
Q ss_pred ceeeeEecCCCccc-------------cccccccccC-CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 171 LHFKMFDVGGQRSE-------------RKKWIHCFEG-VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~-------------r~~w~~~~~~-~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
..+.+.|+||-... +.+-..|+++ .+.|++|+|... .-.-.++.++.+.+- .
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~----------d~~~~d~l~ia~~ld----~ 190 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV----------DLANSDALKLAKEVD----P 190 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC----------CCCchhHHHHHHHHH----H
Confidence 68999999997421 1234456674 458888998764 111123344444432 1
Q ss_pred CCCcEEEEeecCCcccc
Q psy8318 237 MDTSIILFLNKNDLFQE 253 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~ 253 (313)
.+.|.++|+||.|...+
T Consensus 191 ~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 191 QGERTIGVITKLDLMDE 207 (240)
T ss_pred cCCcEEEEEECCCCCCc
Confidence 46799999999997653
No 317
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.60 E-value=0.00042 Score=60.68 Aligned_cols=71 Identities=7% Similarity=0.215 Sum_probs=52.5
Q ss_pred cCceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 169 KDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
++..+.+||++|-.. +|.+...+....|.++++.+..| ..+.-...++..+... . .+.|+
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d-----------raL~~d~~f~~dVi~~-~-~~~~~ 151 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD-----------RALGTDEDFLRDVIIL-G-LDKRV 151 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC-----------ccccCCHHHHHHHHHh-c-cCcee
Confidence 456799999999654 56667778888999999999887 4444455666666542 2 23799
Q ss_pred EEEeecCCccc
Q psy8318 242 ILFLNKNDLFQ 252 (313)
Q Consensus 242 ilv~NK~Dl~~ 252 (313)
+++.|-+|...
T Consensus 152 i~~VtQ~D~a~ 162 (296)
T COG3596 152 LFVVTQADRAE 162 (296)
T ss_pred EEEEehhhhhc
Confidence 99999999765
No 318
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.57 E-value=0.00055 Score=61.32 Aligned_cols=21 Identities=19% Similarity=0.582 Sum_probs=19.5
Q ss_pred cceEEEEcCCCCchhHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~ 30 (313)
.++|+++|.+|+|||||++-|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL 24 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTL 24 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 579999999999999999985
No 319
>PRK12288 GTPase RsgA; Reviewed
Probab=97.57 E-value=0.00013 Score=67.26 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=54.8
Q ss_pred cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCC
Q psy8318 193 EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKE 272 (313)
Q Consensus 193 ~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~ 272 (313)
.++|.+++|+++.. ..++.....++... . ..++|++||+||+|+.... ....+......| ...+
T Consensus 119 ANvD~vlIV~s~~p----------~~s~~~Ldr~L~~a-~---~~~i~~VIVlNK~DL~~~~-~~~~~~~~~~~y-~~~g 182 (347)
T PRK12288 119 ANIDQIVIVSAVLP----------ELSLNIIDRYLVAC-E---TLGIEPLIVLNKIDLLDDE-GRAFVNEQLDIY-RNIG 182 (347)
T ss_pred EEccEEEEEEeCCC----------CCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCcH-HHHHHHHHHHHH-HhCC
Confidence 55899999999764 33333333333322 2 2468999999999986531 101111111122 2234
Q ss_pred eEEEEeecccCcCHHHHHHHHHH
Q psy8318 273 IYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 273 ~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..++++||++++|+.++++++..
T Consensus 183 ~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 183 YRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred CeEEEEeCCCCcCHHHHHHHHhh
Confidence 67899999999999999998865
No 320
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00027 Score=65.54 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=80.1
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
-|+-+....++.++..+.|.|++|++.+-+--..-....+++++|++..+- -.....|.+..+..+
T Consensus 36 ~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdll------ 101 (447)
T COG3276 36 ITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLL------ 101 (447)
T ss_pred ceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhc------
Confidence 344444445555677899999999987654434445678999999998641 123444555544433
Q ss_pred CCCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.....++++||+|..+..... .++....+ + ....++.+||++|+||.++-+.|.+..
T Consensus 102 gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l---~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 102 GIKNGIIVLTKADRVDEARIEQKIKQILADLS-L---ANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred CCCceEEEEeccccccHHHHHHHHHHHHhhcc-c---ccccccccccccCCCHHHHHHHHHHhh
Confidence 345679999999987542111 12222222 2 344568999999999999999988866
No 321
>PRK13796 GTPase YqeH; Provisional
Probab=97.53 E-value=0.0001 Score=68.58 Aligned_cols=87 Identities=13% Similarity=0.213 Sum_probs=53.1
Q ss_pred cCCc-EEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318 193 EGVT-AIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK 271 (313)
Q Consensus 193 ~~~~-~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~ 271 (313)
...+ .|++|+|+.|+. .++. ..+..+. .+.|+++|+||+|+.........+.+.+..+....
T Consensus 67 ~~~~~lIv~VVD~~D~~---------~s~~---~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN---------GSWI---PGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred cccCcEEEEEEECccCC---------Cchh---HHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 3444 889999999853 2222 2233332 25799999999999653222222222211110112
Q ss_pred Ce---EEEEeecccCcCHHHHHHHHHHH
Q psy8318 272 EI---YTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 272 ~~---~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
++ .++.+||+++.|+.++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 22 57899999999999999998764
No 322
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.48 E-value=0.00018 Score=58.47 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=50.4
Q ss_pred cEEEEEEecCCcccccccccccccHHHHHHHHH-HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeE
Q psy8318 196 TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD-SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIY 274 (313)
Q Consensus 196 ~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~-~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~ 274 (313)
|.+++|+|..+ +....+ .++. ..+.. .+.|+++|+||+|+..+.... .....+.. .....
T Consensus 1 Dvvl~VvD~~~----------p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~---~~~~~ 61 (155)
T cd01849 1 DVILEVLDARD----------PLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLR-KWLAYLRH---SYPTI 61 (155)
T ss_pred CEEEEEEeccC----------CccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHH-HHHHHHHh---hCCce
Confidence 57899999876 211111 1222 22221 468999999999985431111 11111111 12345
Q ss_pred EEEeecccCcCHHHHHHHHHHHHH
Q psy8318 275 THFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 275 ~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
++.+||+++.|+.++.+.+.+...
T Consensus 62 ii~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 62 PFKISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred EEEEeccCCcChhhHHHHHHHHhH
Confidence 788999999999999998877643
No 323
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00048 Score=60.73 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=64.9
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
-|+......++-.+..+...|++|+..+-+.-..--...|+.|+|++.+|- +.+..-+.. -+-.++
T Consensus 61 ITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG-------pmPqTrEHi-Llarqv------ 126 (394)
T COG0050 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-------PMPQTREHI-LLARQV------ 126 (394)
T ss_pred ceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC-------CCCcchhhh-hhhhhc------
Confidence 344433444555778899999999976654333333457999999999972 223332222 111111
Q ss_pred CCCcEEEEeecCCcccc-c---ccCCcccccCcCCC-CCCCeEEEEeeccc
Q psy8318 237 MDTSIILFLNKNDLFQE-K---ITKSPLTVCFPEYT-DQKEIYTHFTCATD 282 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~-k---~~~~~l~~~f~~~~-~~~~~~~~~tSA~~ 282 (313)
.-..+++|+||+|+.+. . +...+..+.+.+|. .....++...||+.
T Consensus 127 Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 127 GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 12357888899998752 2 22335556666664 22345666666653
No 324
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0003 Score=54.14 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=61.3
Q ss_pred EecCCCcccccccccc----ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcc
Q psy8318 176 FDVGGQRSERKKWIHC----FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLF 251 (313)
Q Consensus 176 ~D~~Gq~~~r~~w~~~----~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 251 (313)
+||+|---..+.|.+. ..+++.+++|-+..+-. .+|.- -|.. .-..|+|=+.+|.|+.
T Consensus 42 IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~---------s~f~p---~f~~------~~~k~vIgvVTK~DLa 103 (148)
T COG4917 42 IDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE---------SRFPP---GFLD------IGVKKVIGVVTKADLA 103 (148)
T ss_pred cCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc---------ccCCc---cccc------ccccceEEEEeccccc
Confidence 5899976666777543 47899999999888721 11110 0111 1235689999999998
Q ss_pred c-ccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 252 Q-EKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 252 ~-~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
+ +.+.. .+..+.+. . .-.+|.+||.+..||+++++.+..
T Consensus 104 ed~dI~~--~~~~L~ea-G--a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 104 EDADISL--VKRWLREA-G--AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred chHhHHH--HHHHHHHc-C--CcceEEEeccCcccHHHHHHHHHh
Confidence 4 32222 11222222 1 225889999999999999988754
No 325
>KOG0468|consensus
Probab=97.41 E-value=0.00034 Score=67.73 Aligned_cols=68 Identities=13% Similarity=0.254 Sum_probs=52.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+..-+++.||+|+..+..-...-++-+|+++.|+|+.+ .-+...-++++...+ .+.|+++++||.
T Consensus 195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq----~~~~i~vviNKi 259 (971)
T KOG0468|consen 195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQ----NRLPIVVVINKV 259 (971)
T ss_pred ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHh----ccCcEEEEEehh
Confidence 45778999999999888777777889999999999997 222333344444444 357999999999
Q ss_pred Ccc
Q psy8318 249 DLF 251 (313)
Q Consensus 249 Dl~ 251 (313)
|..
T Consensus 260 DRL 262 (971)
T KOG0468|consen 260 DRL 262 (971)
T ss_pred HHH
Confidence 964
No 326
>PTZ00258 GTP-binding protein; Provisional
Probab=97.37 E-value=0.00072 Score=63.08 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.9
Q ss_pred hhhccceEEEEcCCCCchhHHHHHH
Q psy8318 6 WQEREVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 6 ~~~~~~killlG~~~sGKst~~kq~ 30 (313)
+...-++|.++|.+++|||||++.+
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaL 41 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNAL 41 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHH
Confidence 4456779999999999999999996
No 327
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.33 E-value=0.0015 Score=64.06 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=46.5
Q ss_pred EEecCceeeeEecCCCcccc------ccc----ccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 166 FTFKDLHFKMFDVGGQRSER------KKW----IHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 166 ~~~~~~~~~i~D~~Gq~~~r------~~w----~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
....+..+.++||+|-.... ..+ ..++. ++|+||||.+++.+... ..-..+++.+..++..
T Consensus 161 ~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D-------~eD~~aLr~Iq~lFG~ 233 (763)
T TIGR00993 161 GLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRD-------SNDLPLLRTITDVLGP 233 (763)
T ss_pred EEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcccc-------HHHHHHHHHHHHHhCH
Confidence 34567899999999965321 111 11333 58999999988753110 0112355556665553
Q ss_pred CCCCCCcEEEEeecCCccc
Q psy8318 234 KWFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~ 252 (313)
... ...||+++..|...
T Consensus 234 ~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 234 SIW--FNAIVTLTHAASAP 250 (763)
T ss_pred HhH--cCEEEEEeCCccCC
Confidence 322 46788899998654
No 328
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.31 E-value=0.00028 Score=58.41 Aligned_cols=86 Identities=21% Similarity=0.140 Sum_probs=53.6
Q ss_pred ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCC
Q psy8318 190 HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD 269 (313)
Q Consensus 190 ~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~ 269 (313)
...+++|.+++|+|.++... .. ...+.+.+ .+.|+++++||+|+..+... ....+++..
T Consensus 15 ~~i~~aD~il~v~D~~~~~~--------~~---~~~i~~~~------~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~~--- 73 (171)
T cd01856 15 EKLKLVDLVIEVRDARIPLS--------SR---NPLLEKIL------GNKPRIIVLNKADLADPKKT-KKWLKYFES--- 73 (171)
T ss_pred HHHhhCCEEEEEeeccCccC--------cC---ChhhHhHh------cCCCEEEEEehhhcCChHHH-HHHHHHHHh---
Confidence 35688999999999976210 00 01112211 24699999999998643111 111122111
Q ss_pred CCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 270 QKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 270 ~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
....++.+||+++.|+.++.+.+.+.+
T Consensus 74 -~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 -KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123468899999999999999988865
No 329
>KOG0461|consensus
Probab=97.28 E-value=0.0012 Score=59.43 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=63.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
..++.+.|++|+.+.-+-...--.-.|..+.|+|+..-- .....|.+-+=+-++ ...++|.||.|
T Consensus 69 ~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~--------QtQtAEcLiig~~~c-------~klvvvinkid 133 (522)
T KOG0461|consen 69 QLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK--------QTQTAECLIIGELLC-------KKLVVVINKID 133 (522)
T ss_pred cceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc--------ccccchhhhhhhhhc-------cceEEEEeccc
Confidence 367899999998654322222222346678999988621 122233333333222 24677888888
Q ss_pred cccccccCCcc-------cccCcCCCCCCCeEEEEeecccC----cCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPL-------TVCFPEYTDQKEIYTHFTCATDT----SNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~~~~~l-------~~~f~~~~~~~~~~~~~tSA~~~----~~v~~~f~~i~~~i~~ 299 (313)
+..+.-..+.+ .+.+..-+-+-+.++.++||++| +++.++.+.+...+..
T Consensus 134 ~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 134 VLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 76542222221 22221111123467899999999 6666666666555543
No 330
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00034 Score=62.41 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=70.1
Q ss_pred ceeeeEecCCCccccccccccccC---CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEG---VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~---~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+.|.|.+|++..- ..++++ .|+.++|++..+ +|. ..+..|-+..++=+ .-..++++-||
T Consensus 86 R~VSfVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANE---pcP----QPQT~EHl~AleIi------gik~iiIvQNK 149 (415)
T COG5257 86 RRVSFVDAPGHETLM---ATMLSGAALMDGALLVIAANE---PCP----QPQTREHLMALEII------GIKNIIIVQNK 149 (415)
T ss_pred EEEEEeeCCchHHHH---HHHhcchhhhcceEEEEecCC---CCC----CCchHHHHHHHhhh------ccceEEEEecc
Confidence 357889999998643 334555 488999998875 221 12333333333222 23578999999
Q ss_pred CCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 248 NDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 248 ~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+|+-.+.-.. .++.++.. =+-.-+..+.++||..+.||+.+++.|.+.|-
T Consensus 150 IDlV~~E~AlE~y~qIk~Fvk-Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 150 IDLVSRERALENYEQIKEFVK-GTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred cceecHHHHHHHHHHHHHHhc-ccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 9987542221 12222221 11123457899999999999999999998874
No 331
>KOG1143|consensus
Probab=97.23 E-value=0.0007 Score=61.52 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=62.3
Q ss_pred ceeeeEecCCCccccccccccccC--CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEG--VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~--~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.-++++|.+|+.++.+-..+-+.+ .++..+|++...- ......|-+-+...+ +.|+.++.+|+
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--------i~~tTrEHLgl~~AL-------~iPfFvlvtK~ 313 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--------ITWTTREHLGLIAAL-------NIPFFVLVTKM 313 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC--------CccccHHHHHHHHHh-------CCCeEEEEEee
Confidence 457899999999888777665543 5677777776531 123334444444333 58999999999
Q ss_pred Ccccccc---cCCcccccCcCCC----------------------CCCCeEEEEeecccCcCHHH
Q psy8318 249 DLFQEKI---TKSPLTVCFPEYT----------------------DQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 249 Dl~~~k~---~~~~l~~~f~~~~----------------------~~~~~~~~~tSA~~~~~v~~ 288 (313)
|+-...- ...+++..+.... ...-.+++.+|...|++.+-
T Consensus 314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence 9865411 1112222111111 23345788899999998754
No 332
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.21 E-value=0.0043 Score=57.86 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.2
Q ss_pred hhhhhccceEEEEcCCCCchhHHHHHH
Q psy8318 4 VQWQEREVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 4 ~~~~~~~~killlG~~~sGKst~~kq~ 30 (313)
.+|..+++-|-++|.-.+|||||+|.+
T Consensus 11 a~RT~G~IyIGvvGpvrtGKSTfIn~f 37 (492)
T TIGR02836 11 AERTQGDIYIGVVGPVRTGKSTFIKKF 37 (492)
T ss_pred HHHhCCcEEEEEEcCCCCChHHHHHHH
Confidence 457778999999999999999999986
No 333
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.16 E-value=0.0018 Score=59.79 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
++|.++|.+++|||||++.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaL 22 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNAL 22 (364)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999986
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.14 E-value=0.00029 Score=56.29 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=44.5
Q ss_pred cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCC
Q psy8318 191 CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQ 270 (313)
Q Consensus 191 ~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~ 270 (313)
..+++|++++|+|..+ +.... ...+...+... ..+.|+++++||+|+..+. ......+++. .
T Consensus 8 ~i~~aD~vl~ViD~~~----------p~~~~--~~~l~~~l~~~-~~~k~~iivlNK~DL~~~~-~~~~~~~~~~----~ 69 (141)
T cd01857 8 VVERSDIVVQIVDARN----------PLLFR--PPDLERYVKEV-DPRKKNILLLNKADLLTEE-QRKAWAEYFK----K 69 (141)
T ss_pred HHhhCCEEEEEEEccC----------CcccC--CHHHHHHHHhc-cCCCcEEEEEechhcCCHH-HHHHHHHHHH----h
Confidence 4678999999999876 11111 11222222221 1468999999999985432 1112222222 1
Q ss_pred CCeEEEEeecccCcC
Q psy8318 271 KEIYTHFTCATDTSN 285 (313)
Q Consensus 271 ~~~~~~~tSA~~~~~ 285 (313)
.+..++++||.++.+
T Consensus 70 ~~~~ii~iSa~~~~~ 84 (141)
T cd01857 70 EGIVVVFFSALKENA 84 (141)
T ss_pred cCCeEEEEEecCCCc
Confidence 234678899988764
No 335
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.11 E-value=0.00087 Score=71.39 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=43.8
Q ss_pred eeeEecCCCc--------cccccccccc---------cCCcEEEEEEecCCcccccccccccccH-HHHHHHHHHHHhCC
Q psy8318 173 FKMFDVGGQR--------SERKKWIHCF---------EGVTAIIFCVALSGYDSVLAEDEEMNRM-IESMKLFDSICNSK 234 (313)
Q Consensus 173 ~~i~D~~Gq~--------~~r~~w~~~~---------~~~~~iifv~dls~~d~~~~e~~~~~~l-~e~~~~~~~~~~~~ 234 (313)
-.++||+|.- ..+..|..++ +..++||+++|+++.-....+ ..... .....-++++. ..
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~--~~~~~a~~lR~rl~el~-~~ 239 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPA--ERKAHARAIRQRLQELR-EQ 239 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHH--HHHHHHHHHHHHHHHHH-HH
Confidence 3478999932 2334576653 348999999999973211100 01111 11222233332 23
Q ss_pred CCCCCcEEEEeecCCcc
Q psy8318 235 WFMDTSIILFLNKNDLF 251 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~ 251 (313)
.....|+.|+++|+|+.
T Consensus 240 lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLL 256 (1169)
T ss_pred hCCCCCEEEEEecchhh
Confidence 34578999999999975
No 336
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.00057 Score=56.38 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
||+++|++||||||+.+++--..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999985433
No 337
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.08 E-value=0.0022 Score=60.55 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=39.5
Q ss_pred cCceeeeEecCCCcccccccccc------ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHC------FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~------~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.++.+.|+||+|.......+..- ....+.+++|+|.+- ...-.+..+.|.+.+ .+--
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~----------Gq~a~~~a~~F~~~~-------~~~g 243 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI----------GQAAEAQAKAFKDSV-------DVGS 243 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc----------ChhHHHHHHHHHhcc-------CCcE
Confidence 35788999999965433222221 234678999999774 222233334443321 2456
Q ss_pred EEeecCCccc
Q psy8318 243 LFLNKNDLFQ 252 (313)
Q Consensus 243 lv~NK~Dl~~ 252 (313)
+++||.|...
T Consensus 244 ~IlTKlD~~a 253 (429)
T TIGR01425 244 VIITKLDGHA 253 (429)
T ss_pred EEEECccCCC
Confidence 8899999643
No 338
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00038 Score=57.99 Aligned_cols=21 Identities=38% Similarity=0.762 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
.||+++|++||||||+.+++-
T Consensus 1 ~riiilG~pGaGK~T~A~~La 21 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLA 21 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999984
No 339
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.02 E-value=0.001 Score=59.59 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=54.8
Q ss_pred ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCC
Q psy8318 190 HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD 269 (313)
Q Consensus 190 ~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~ 269 (313)
...+.+|.||+|+|..+ +.... . ..+...+ .+.|+++|+||+|+..+.. .....+++..
T Consensus 17 ~~l~~aDvVl~V~Dar~----------p~~~~-~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~--- 75 (276)
T TIGR03596 17 EKLKLVDVVIEVLDARI----------PLSSR-N-PMIDEIR-----GNKPRLIVLNKADLADPAV-TKQWLKYFEE--- 75 (276)
T ss_pred HHHhhCCEEEEEEeCCC----------CCCCC-C-hhHHHHH-----CCCCEEEEEEccccCCHHH-HHHHHHHHHH---
Confidence 34688999999999875 11100 1 1122222 2579999999999854211 1111112211
Q ss_pred CCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 270 QKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 270 ~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+..++.+||+++.|+.++.+.+.+.+..
T Consensus 76 -~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 -KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred -cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 22357889999999999999888877643
No 340
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.01 E-value=0.00055 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
+|++.|.+||||||+++++.-.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998543
No 341
>KOG1533|consensus
Probab=97.00 E-value=0.0003 Score=60.05 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-.+++|++||||||.+.-|.-
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred ceEEEcCCCCCccchhhhHHH
Confidence 468999999999999887643
No 342
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.00 E-value=0.003 Score=56.27 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=24.4
Q ss_pred ceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCC
Q psy8318 171 LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSG 206 (313)
Q Consensus 171 ~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~ 206 (313)
..++++|++|-.. .........+.+|++++|+|..+
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 3588999999432 11122334578999999999764
No 343
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.00066 Score=56.22 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
||+++|++|||||||.+++.-.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999999985433
No 344
>KOG1534|consensus
Probab=96.82 E-value=0.00085 Score=56.46 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
+-++++|++||||||++..|.
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred eeEEEEccCCCCcchHHHHHH
Confidence 467999999999999999875
No 345
>KOG1707|consensus
Probab=96.78 E-value=0.021 Score=54.92 Aligned_cols=88 Identities=13% Similarity=0.050 Sum_probs=53.3
Q ss_pred cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCC
Q psy8318 193 EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKE 272 (313)
Q Consensus 193 ~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~ 272 (313)
..||++.+++|+++ +.++.-....++.-.. ..+.|+++|+.|.|+.+........-+.|. ...+
T Consensus 494 ~~cDv~~~~YDsS~----------p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~---~~~~ 557 (625)
T KOG1707|consen 494 AACDVACLVYDSSN----------PRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQPDEFC---RQLG 557 (625)
T ss_pred ceeeeEEEecccCC----------chHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCChHHHH---HhcC
Confidence 67899999999998 5666666555554322 267999999999998764311111112221 1122
Q ss_pred --eEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 273 --IYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 273 --~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
-..+..|+..+. .++|..|.....
T Consensus 558 i~~P~~~S~~~~~s--~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 558 LPPPIHISSKTLSS--NELFIKLATMAQ 583 (625)
T ss_pred CCCCeeeccCCCCC--chHHHHHHHhhh
Confidence 234444443333 678887776554
No 346
>KOG2655|consensus
Probab=96.76 E-value=0.012 Score=53.96 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.5
Q ss_pred cceEEEEcCCCCchhHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~ 30 (313)
++.++++|.+|+|||||++.|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsL 41 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSL 41 (366)
T ss_pred ceEEEEecCCCccHHHHHHHH
Confidence 478999999999999999995
No 347
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.73 E-value=0.0011 Score=52.72 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r 31 (313)
|++.|.+||||||+.+++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999975
No 348
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.73 E-value=0.0023 Score=57.59 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=55.0
Q ss_pred cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCC
Q psy8318 191 CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQ 270 (313)
Q Consensus 191 ~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~ 270 (313)
..+.+|.||+|+|..+. .... . ..+...+. +.|+++|+||+|+.... ......+++.+
T Consensus 21 ~l~~aDvIL~VvDar~p----------~~~~-~-~~l~~~~~-----~kp~iiVlNK~DL~~~~-~~~~~~~~~~~---- 78 (287)
T PRK09563 21 NLKLVDVVIEVLDARIP----------LSSE-N-PMIDKIIG-----NKPRLLILNKSDLADPE-VTKKWIEYFEE---- 78 (287)
T ss_pred HhhhCCEEEEEEECCCC----------CCCC-C-hhHHHHhC-----CCCEEEEEEchhcCCHH-HHHHHHHHHHH----
Confidence 46889999999998751 1111 0 12223322 57999999999985421 11112222211
Q ss_pred CCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 271 KEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 271 ~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+..++.+||+++.|+..+.+.+.+.+..
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 13457889999999999999988877644
No 349
>PRK06217 hypothetical protein; Validated
Probab=96.67 E-value=0.0013 Score=55.08 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
.||+++|.+||||||+.+++.-..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 379999999999999999985433
No 350
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.59 E-value=0.019 Score=54.65 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.7
Q ss_pred ccceEEEEcCCCCchhHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r 31 (313)
++.-|+++|..||||||++..+-
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45678999999999999998773
No 351
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.014 Score=54.18 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=43.1
Q ss_pred cCceeeeEecCCCccccccc---cccc---cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC-cE
Q psy8318 169 KDLHFKMFDVGGQRSERKKW---IHCF---EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT-SI 241 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w---~~~~---~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~-pi 241 (313)
.+..+.++||+|........ ...+ ....-.++|++.+.- ...+.+...-|......+...-. +-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~---------~~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH---------GDTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC---------hHHHHHHHHHHHHhhcccccccCCCC
Confidence 45688999999976433222 1122 233456888888751 45556666777666433221111 22
Q ss_pred EEEeecCCccc
Q psy8318 242 ILFLNKNDLFQ 252 (313)
Q Consensus 242 ilv~NK~Dl~~ 252 (313)
=++++|.|-..
T Consensus 285 ~~I~TKlDEt~ 295 (374)
T PRK14722 285 GCILTKLDEAS 295 (374)
T ss_pred EEEEeccccCC
Confidence 46789999543
No 352
>PRK14974 cell division protein FtsY; Provisional
Probab=96.49 E-value=0.036 Score=50.89 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=18.7
Q ss_pred ccceEEEEcCCCCchhHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~ 30 (313)
+...++++|.+||||||.+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakL 160 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKL 160 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3567899999999999977766
No 353
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.32 E-value=0.0025 Score=52.16 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
||++.|+.++||||+++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998644
No 354
>PRK03839 putative kinase; Provisional
Probab=96.31 E-value=0.0035 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
+|+++|.+||||||+.+++.-.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999985443
No 355
>KOG0463|consensus
Probab=96.30 E-value=0.031 Score=51.13 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHH
Q psy8318 217 MNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 217 ~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~ 288 (313)
.|-++|.++++..++.++...+.|+++ -++-|+.-. ...|+ ..+-|.+|.+|-.+|+|+.-
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlV-rs~DDVv~~-------A~NF~---Ser~CPIFQvSNVtG~NL~L 348 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLV-RSMDDVVHA-------AVNFP---SERVCPIFQVSNVTGTNLPL 348 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEE-ecccceEEe-------eccCc---cccccceEEeccccCCChHH
Confidence 688899999999999998888888654 677775432 11233 34678899999999999754
No 356
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.29 E-value=0.0037 Score=54.27 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.1
Q ss_pred hccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
...+||+++|++||||||+.+++.-.++
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999854443
No 357
>PRK01889 GTPase RsgA; Reviewed
Probab=96.28 E-value=0.01 Score=55.02 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=50.9
Q ss_pred ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318 192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK 271 (313)
Q Consensus 192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~ 271 (313)
..++|.+++|+++.. +.+...++..+...+. .++|.+||+||+|+... .. +..+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p-------~~~~~~ldr~L~~a~~-------~~i~piIVLNK~DL~~~-~~--~~~~~~~~~--~~ 170 (356)
T PRK01889 110 AANVDTVFIVCSLNH-------DFNLRRIERYLALAWE-------SGAEPVIVLTKADLCED-AE--EKIAEVEAL--AP 170 (356)
T ss_pred EEeCCEEEEEEecCC-------CCChhHHHHHHHHHHH-------cCCCEEEEEEChhcCCC-HH--HHHHHHHHh--CC
Confidence 478999999999852 1112222222222111 35677899999999653 11 111111111 13
Q ss_pred CeEEEEeecccCcCHHHHHHHHH
Q psy8318 272 EIYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 272 ~~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
+..++.+||+++.|+.++..++.
T Consensus 171 g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 171 GVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CCcEEEEECCCCccHHHHHHHhh
Confidence 45688999999999999888875
No 358
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.27 E-value=0.0058 Score=41.39 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
-.++.|..||||||++.-+..+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999887643
No 359
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.25 E-value=0.0028 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
.++++|++|||||||++-+..+-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68899999999999999876543
No 360
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.23 E-value=0.0036 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
-.+++.|++|||||||+|++-.+-
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 368899999999999999986554
No 361
>COG4639 Predicted kinase [General function prediction only]
Probab=96.22 E-value=0.014 Score=46.94 Aligned_cols=17 Identities=53% Similarity=0.720 Sum_probs=16.1
Q ss_pred EEEEcCCCCchhHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQ 29 (313)
Q Consensus 13 illlG~~~sGKst~~kq 29 (313)
|+|.|.+|||||||+++
T Consensus 5 vvL~G~~~sGKsT~ak~ 21 (168)
T COG4639 5 VVLRGASGSGKSTFAKE 21 (168)
T ss_pred EEEecCCCCchhHHHHH
Confidence 68999999999999998
No 362
>PRK14532 adenylate kinase; Provisional
Probab=96.16 E-value=0.0039 Score=52.26 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
+|+++|.+||||||+.+.+--
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999843
No 363
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.16 E-value=0.041 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.8
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
+.-++++|.+||||||++-.+-
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 5568899999999999987763
No 364
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.14 E-value=0.0051 Score=42.70 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.3
Q ss_pred EEEEcCCCCchhHHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~ 33 (313)
|.+.|.+||||||+.+.+.-.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998544
No 365
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.13 E-value=0.0045 Score=47.92 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r 31 (313)
|++-|.+||||||+++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 6899999999999999985
No 366
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.05 E-value=0.0045 Score=51.38 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
.++++|++||||||+++++-.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999743
No 367
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.05 E-value=0.0045 Score=51.89 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.++++|++||||||+++.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~ 23 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALR 23 (186)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999999974
No 368
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.03 E-value=0.0046 Score=51.45 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
|+++|++||||||+.+++.-
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999743
No 369
>PRK13949 shikimate kinase; Provisional
Probab=96.02 E-value=0.005 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
+|+++|.+||||||+.+.+--.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987433
No 370
>PRK14530 adenylate kinase; Provisional
Probab=96.02 E-value=0.0059 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~~ 35 (313)
+|+++|++||||||+.+.+--.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999854443
No 371
>KOG0460|consensus
Probab=96.02 E-value=0.015 Score=52.50 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=60.7
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
....+-=.|++|+-.|-+.-..=-...|+.|+|+..+|-. ..+..|-+-+-.++ .=..++++.||.
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~--------MPQTrEHlLLArQV------GV~~ivvfiNKv 180 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP--------MPQTREHLLLARQV------GVKHIVVFINKV 180 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC--------CcchHHHHHHHHHc------CCceEEEEEecc
Confidence 4456666799999766443322234468999999999821 33334444443333 124688999999
Q ss_pred Ccccc-c---ccCCcccccCcCCC-CCCCeEEEEe---ecccCcC
Q psy8318 249 DLFQE-K---ITKSPLTVCFPEYT-DQKEIYTHFT---CATDTSN 285 (313)
Q Consensus 249 Dl~~~-k---~~~~~l~~~f~~~~-~~~~~~~~~t---SA~~~~~ 285 (313)
|+..+ . +.+-++++.+.+|. +.-.++++.- ||+.|.+
T Consensus 181 D~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~ 225 (449)
T KOG0460|consen 181 DLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQ 225 (449)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCC
Confidence 98732 2 23345566666664 2334555554 4556644
No 372
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.99 E-value=0.02 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEcCCCCchhHHHHHHHHHhc
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~~ 35 (313)
|++.|.+||||||+.+.+.-...
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 78999999999999999864433
No 373
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.98 E-value=0.005 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
+|+++|++||||||+.+++.--+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999985433
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.97 E-value=0.027 Score=50.27 Aligned_cols=67 Identities=12% Similarity=0.253 Sum_probs=38.9
Q ss_pred cCceeeeEecCCCcccccccc-------ccc-----cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWI-------HCF-----EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~-------~~~-----~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
++..+.++||+|.......+. ... ..++.+++|+|.+.- .+.+..+ ..|.+.+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~-~~f~~~~----- 217 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQA-KVFNEAV----- 217 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHH-HHHHhhC-----
Confidence 457889999999754322221 111 237889999999751 2333333 2222211
Q ss_pred CCCcEEEEeecCCccc
Q psy8318 237 MDTSIILFLNKNDLFQ 252 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~ 252 (313)
.+--+++||.|...
T Consensus 218 --~~~g~IlTKlDe~~ 231 (272)
T TIGR00064 218 --GLTGIILTKLDGTA 231 (272)
T ss_pred --CCCEEEEEccCCCC
Confidence 14468899999643
No 375
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.94 E-value=0.0053 Score=51.16 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.|+++|.+||||||+++.+-
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999874
No 376
>PRK14531 adenylate kinase; Provisional
Probab=95.93 E-value=0.0073 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
.+|+++|++||||||+.+.+---+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999984433
No 377
>KOG0410|consensus
Probab=95.92 E-value=0.038 Score=49.73 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=52.0
Q ss_pred ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc----EEEEeecCCcccccccCCcccccCcCC
Q psy8318 192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS----IILFLNKNDLFQEKITKSPLTVCFPEY 267 (313)
Q Consensus 192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p----iilv~NK~Dl~~~k~~~~~l~~~f~~~ 267 (313)
...+|.++-|+|+|. ...++-......+++.-.....| ++=|-||.|........++
T Consensus 255 VaeadlllHvvDiSh-----------P~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~-------- 315 (410)
T KOG0410|consen 255 VAEADLLLHVVDISH-----------PNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK-------- 315 (410)
T ss_pred HhhcceEEEEeecCC-----------ccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcccc--------
Confidence 456899999999996 34444444444455543333333 3445677775443221111
Q ss_pred CCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 268 TDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 268 ~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.. ...+||++|+|+++..+.+-+.+..
T Consensus 316 ---n~--~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 316 ---NL--DVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ---CC--ccccccccCccHHHHHHHHHHHhhh
Confidence 11 4678999999999998888776654
No 378
>PRK08233 hypothetical protein; Provisional
Probab=95.91 E-value=0.0062 Score=50.48 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
.-|.+.|.+||||||+.+++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 456778999999999999974
No 379
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.90 E-value=0.0065 Score=47.89 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.++++|.+|||||||++-+
T Consensus 13 ~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEccCCCccccceeee
Confidence 6899999999999999875
No 380
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.89 E-value=0.0068 Score=48.20 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHh
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~ 34 (313)
++++|++||||||+++++.-.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6899999999999999985443
No 381
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.88 E-value=0.0068 Score=51.83 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
||+++|++||||||+.+++--
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999843
No 382
>PRK02496 adk adenylate kinase; Provisional
Probab=95.87 E-value=0.0078 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
+|++++|++||||||+.+.+--.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999985433
No 383
>PRK10867 signal recognition particle protein; Provisional
Probab=95.87 E-value=0.069 Score=50.74 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=17.8
Q ss_pred cceEEEEcCCCCchhHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~ 30 (313)
+.-|+++|.+||||||++-.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHH
Confidence 557889999999999977665
No 384
>PRK00625 shikimate kinase; Provisional
Probab=95.81 E-value=0.0091 Score=49.52 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
+|+++|.+||||||+.+++.-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999843
No 385
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.80 E-value=0.0085 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
+||+++|++||||||+.+.+---+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999985333
No 386
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.79 E-value=0.0074 Score=45.74 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
-.++++|++||||||+++.+
T Consensus 16 e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 16 VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHh
Confidence 35799999999999999985
No 387
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.79 E-value=0.0066 Score=52.87 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=18.8
Q ss_pred EEEEcCCCCchhHHHHHHHHHh
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~ 34 (313)
++++|++||||||++|.+..+.
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 5789999999999999985443
No 388
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.74 E-value=0.0067 Score=49.50 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.3
Q ss_pred EEEEcCCCCchhHHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~ 33 (313)
|++.|.+||||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998543
No 389
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.73 E-value=0.0076 Score=48.41 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
+++.|.+||||||+.+++.-
T Consensus 2 i~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHh
Confidence 68999999999999999753
No 390
>PLN02200 adenylate kinase family protein
Probab=95.71 E-value=0.0098 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~ 33 (313)
....|+++|.+||||||+.+.+.--
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998533
No 391
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.70 E-value=0.0085 Score=46.43 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+++.|++||||||+++.+-
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~ 23 (148)
T smart00382 4 VILIVGPPGSGKTTLARALA 23 (148)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999873
No 392
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.0075 Score=55.10 Aligned_cols=19 Identities=37% Similarity=0.721 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r 31 (313)
+++||++||||||+++-+-
T Consensus 32 ~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999988764
No 393
>KOG0465|consensus
Probab=95.65 E-value=0.068 Score=51.88 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=52.5
Q ss_pred EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
-..+.+++.+++++||+|+-.|..--...++--|+.+.|+|... --...+...+.++.. .++|.+
T Consensus 96 At~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~-----------GVqsQt~tV~rQ~~r----y~vP~i 160 (721)
T KOG0465|consen 96 ATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVA-----------GVESQTETVWRQMKR----YNVPRI 160 (721)
T ss_pred eeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccc-----------ceehhhHHHHHHHHh----cCCCeE
Confidence 34567789999999999997765444445666777777777664 222334455555533 368999
Q ss_pred EEeecCCcccc
Q psy8318 243 LFLNKNDLFQE 253 (313)
Q Consensus 243 lv~NK~Dl~~~ 253 (313)
-+.||+|..++
T Consensus 161 ~FiNKmDRmGa 171 (721)
T KOG0465|consen 161 CFINKMDRMGA 171 (721)
T ss_pred EEEehhhhcCC
Confidence 99999997653
No 394
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.64 E-value=0.009 Score=49.69 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
-.+.++|++|||||||++-+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999865
No 395
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.64 E-value=0.0088 Score=51.03 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.0
Q ss_pred hccceEEEEcCCCCchhHHHHHHHHH
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r~~ 33 (313)
.+...|.+.|.+|||||||++.+.-.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998543
No 396
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.63 E-value=0.0084 Score=50.91 Aligned_cols=20 Identities=35% Similarity=0.616 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|++|||||||+|++.
T Consensus 27 ~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 46899999999999999974
No 397
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.59 E-value=0.011 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~~ 35 (313)
=|-++|++|||||||++-+..+..
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~ 57 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEK 57 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcC
Confidence 356899999999999999877654
No 398
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.59 E-value=0.009 Score=51.44 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++|||||||++-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998864
No 399
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.57 E-value=0.0093 Score=49.44 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.++++|++||||||+++.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 400
>PRK14529 adenylate kinase; Provisional
Probab=95.56 E-value=0.012 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~~ 35 (313)
++|+++|++||||||..+.+...++
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3799999999999999999855443
No 401
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.01 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEcCCCCchhHHHHHHHHHhc
Q psy8318 14 LLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 14 lllG~~~sGKst~~kq~r~~~~ 35 (313)
.++|++|||||||++-+..++.
T Consensus 37 AlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 37 ALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred EEECCCCcCHHHHHHHHHhhcc
Confidence 5899999999999999876653
No 402
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.55 E-value=0.011 Score=46.01 Aligned_cols=18 Identities=33% Similarity=0.684 Sum_probs=17.0
Q ss_pred EEEEcCCCCchhHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 13 illlG~~~sGKst~~kq~ 30 (313)
||+.|++|+||||+++.+
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 689999999999999987
No 403
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.54 E-value=0.014 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=20.9
Q ss_pred hhccceEEEEcCCCCchhHHHHHH
Q psy8318 7 QEREVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 7 ~~~~~killlG~~~sGKst~~kq~ 30 (313)
.....|++++|.+||||||+++-+
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~l 33 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSL 33 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHH
Confidence 445789999999999999988876
No 404
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=95.54 E-value=0.041 Score=47.58 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=31.9
Q ss_pred eecceeEEEEEe---cCceeeeEecCCCccc------cccccccccC--CcEEEEEEecCC
Q psy8318 157 KTTGIIETHFTF---KDLHFKMFDVGGQRSE------RKKWIHCFEG--VTAIIFCVALSG 206 (313)
Q Consensus 157 ~T~g~~~~~~~~---~~~~~~i~D~~Gq~~~------r~~w~~~~~~--~~~iifv~dls~ 206 (313)
.|.|+....... ++..+.+.||+|.... ...+...+.. ++.+||.++...
T Consensus 43 ~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 43 TTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 455665554444 3578999999996432 2223334444 788998888765
No 405
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.52 E-value=0.0097 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
--|+++|++||||||+++.+.-
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999843
No 406
>PF13173 AAA_14: AAA domain
Probab=95.52 E-value=0.011 Score=46.39 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-+++.|+.+|||||+++|+
T Consensus 4 ~~~l~G~R~vGKTtll~~~ 22 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQL 22 (128)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3689999999999999997
No 407
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.51 E-value=0.012 Score=53.85 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHhcCCCC
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIHETGYS 39 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~~~~~~ 39 (313)
-+|+++|++||||||+++.+-..++..+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 48999999999999999999777666653
No 408
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.011 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
++|++-|++|+||||++++++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 378999999999999999998
No 409
>PRK14528 adenylate kinase; Provisional
Probab=95.51 E-value=0.013 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
+|+++|++||||||+.+.+.--+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999985444
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.078 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.2
Q ss_pred cceEEEEcCCCCchhHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~ 30 (313)
.-.++++|.+|+||||++..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakL 370 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKL 370 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 447789999999999999876
No 411
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.50 E-value=0.01 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCchhHHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~ 33 (313)
.-|.+.|.+|||||||++.+.-+
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999998543
No 412
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.47 E-value=0.014 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.9
Q ss_pred EEEEcCCCCchhHHHHHHHHHh
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~ 34 (313)
|.+.|++||||||+.+.+.-+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999986544
No 413
>PRK06762 hypothetical protein; Provisional
Probab=95.47 E-value=0.014 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
-|++.|.+||||||+.+.+.-.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999985444
No 414
>PRK13695 putative NTPase; Provisional
Probab=95.45 E-value=0.012 Score=48.78 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
+|+++.|.+|||||||++.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999975
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.43 E-value=0.011 Score=50.24 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
-++++.|++||||||+++.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 378999999999999999985
No 416
>PRK14526 adenylate kinase; Provisional
Probab=95.42 E-value=0.012 Score=50.51 Aligned_cols=21 Identities=48% Similarity=0.703 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
++|+++|++||||||+++.+-
T Consensus 1 m~i~l~G~pGsGKsT~a~~La 21 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILS 21 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999874
No 417
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=95.42 E-value=0.1 Score=48.35 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=26.6
Q ss_pred eeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcc
Q psy8318 172 HFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYD 208 (313)
Q Consensus 172 ~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d 208 (313)
.+.+.|++|-.. .........+.+++++.|++..+-+
T Consensus 68 ~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~d~ 111 (368)
T TIGR00092 68 TTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFEDD 111 (368)
T ss_pred eEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCCCc
Confidence 457778988532 3335566789999999999987533
No 418
>KOG3347|consensus
Probab=95.40 E-value=0.012 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.4
Q ss_pred hccceEEEEcCCCCchhHHHHHHH
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r 31 (313)
+...+||+-|++|+||||+..|+.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 456699999999999999999974
No 419
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.012 Score=51.16 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=16.6
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-|.+||++||||||+++-+
T Consensus 31 fvsilGpSGcGKSTLLrii 49 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3679999999999998765
No 420
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.012 Score=54.36 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=29.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh----------cCCCChHHHhhhHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH----------ETGYSKEECEQYRPVV 50 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~----------~~~~~~~e~~~~~~~I 50 (313)
=|.++|.+|||||||++-+-=+| +++.+.+.+..||..+
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 37799999999999999875334 3456667777777653
No 421
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.34 E-value=0.011 Score=54.21 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=16.4
Q ss_pred EEEEcCCCCchhHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r 31 (313)
+-+||++||||||+++.+-
T Consensus 34 ~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4599999999999988753
No 422
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=95.33 E-value=0.033 Score=45.40 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=42.8
Q ss_pred CceeeeEecCCCc----cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318 170 DLHFKMFDVGGQR----SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL 245 (313)
Q Consensus 170 ~~~~~i~D~~Gq~----~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~ 245 (313)
...+.++|++|-. .....|..|+..++++|||++.+. .-.-. ....+.+.... ....+++|.
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~----------~~~~~-~~~~l~~~~~~---~~~~~i~V~ 165 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ----------DLTES-DMEFLKQMLDP---DKSRTIFVL 165 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS----------TGGGH-HHHHHHHHHTT---TCSSEEEEE
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc----------ccchH-HHHHHHHHhcC---CCCeEEEEE
Confidence 4678999999963 234678889999999999999886 22222 23334444332 233488999
Q ss_pred ecC
Q psy8318 246 NKN 248 (313)
Q Consensus 246 NK~ 248 (313)
||.
T Consensus 166 nk~ 168 (168)
T PF00350_consen 166 NKA 168 (168)
T ss_dssp E-G
T ss_pred cCC
Confidence 984
No 423
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.31 E-value=0.16 Score=40.24 Aligned_cols=65 Identities=11% Similarity=0.231 Sum_probs=45.7
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.++|+++... ......+..+|.++++++.+. .++......++.+.+.. ...++.++.|+.+-
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-----------~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-----------TSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-----------hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 5688999998543 233456888999999999884 66666666666554322 34578899999973
No 424
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.31 E-value=0.012 Score=51.64 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=16.9
Q ss_pred EEEEcCCCCchhHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r 31 (313)
+.++|++||||||++|-+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~ 49 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLA 49 (258)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4689999999999999873
No 425
>PF05729 NACHT: NACHT domain
Probab=95.29 E-value=0.013 Score=47.36 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=16.6
Q ss_pred EEEEcCCCCchhHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 13 illlG~~~sGKst~~kq~ 30 (313)
+++.|.+|+||||+++.+
T Consensus 3 l~I~G~~G~GKStll~~~ 20 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKL 20 (166)
T ss_pred EEEECCCCCChHHHHHHH
Confidence 689999999999999886
No 426
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.28 E-value=0.014 Score=48.33 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
.+|+++|.+||||||+.+.+-
T Consensus 5 ~~I~liG~~GaGKStl~~~La 25 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLA 25 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHH
Confidence 379999999999999999974
No 427
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.24 E-value=0.019 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
..|++.|.+||||||+.+.+.-..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999985433
No 428
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.23 E-value=0.013 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.3
Q ss_pred EEEEcCCCCchhHHHHHHHHHh
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~ 34 (313)
|-+.|++|||||||++.+.-..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 4688999999999999986443
No 429
>PRK14527 adenylate kinase; Provisional
Probab=95.21 E-value=0.014 Score=49.01 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
..-|+++|++||||||+.+++.-
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999743
No 430
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.20 E-value=0.015 Score=49.63 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=19.6
Q ss_pred ccceEEEEcCCCCchhHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r 31 (313)
+..-++++|++||||||+++++.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 44567889999999999999974
No 431
>PRK06547 hypothetical protein; Provisional
Probab=95.15 E-value=0.017 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=19.7
Q ss_pred hccceEEEEcCCCCchhHHHHHHH
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r 31 (313)
.+...|++.|.+||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALA 36 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345677777999999999999873
No 432
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.13 E-value=0.015 Score=48.33 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l 45 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKIL 45 (177)
T ss_pred EEEEECCCCChHHHHHHHH
Confidence 6789999999999998875
No 433
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.016 Score=50.45 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
.++++|.+||||||+++.+--+
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6899999999999999997533
No 434
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.11 E-value=0.021 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHhc
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~~ 35 (313)
+.++|++||||||+++.+..+.+
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56999999999999999875554
No 435
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.08 E-value=0.017 Score=45.65 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
|++.|.+|+|||++++++-.
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999743
No 436
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.07 E-value=0.016 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-|.++|.+|||||||+|-+.-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5889999999999999987533
No 437
>PLN02674 adenylate kinase
Probab=95.07 E-value=0.021 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.0
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
...+|+++|++||||+|+.+.+.--+
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999985444
No 438
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.06 E-value=0.017 Score=46.52 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEEcCCCCchhHHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~ 33 (313)
|++.|.+||||||+.+.+.-.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999998543
No 439
>PRK13947 shikimate kinase; Provisional
Probab=95.06 E-value=0.022 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhcCC
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIHETG 37 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~~~~ 37 (313)
+|+++|.+||||||+.+.+.-..+-+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999999985433333
No 440
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.05 E-value=0.017 Score=50.75 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
|++.|.+||||||+.+++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999854
No 441
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.05 E-value=0.018 Score=49.24 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988863
No 442
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.04 E-value=0.018 Score=47.93 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.4
Q ss_pred EEEEcCCCCchhHHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~ 33 (313)
|.+.|.+|||||||.+++.-.
T Consensus 2 i~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998644
No 443
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.02 E-value=0.02 Score=46.80 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
-.++++|.+|+|||||++.+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L 55 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINAL 55 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999996
No 444
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.01 E-value=0.018 Score=48.86 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l 46 (205)
T cd03226 28 IIALTGKNGAGKTTLAKIL 46 (205)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999886
No 445
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.00 E-value=0.02 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.4
Q ss_pred ccceEEEEcCCCCchhHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r 31 (313)
..+++.++|.+|+|||||++.|.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHh
Confidence 46788999999999999999973
No 446
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.00 E-value=0.018 Score=49.31 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i 50 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNIL 50 (218)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6789999999999999886
No 447
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.00 E-value=0.018 Score=49.25 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999998863
No 448
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.99 E-value=0.018 Score=48.28 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
=|+|+|++||||||+.+++.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999984
No 449
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.98 E-value=0.019 Score=47.49 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.6
Q ss_pred hccceEEEEcCCCCchhHHHHHHH
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r 31 (313)
++..-|++.|.+||||||+.+.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~ 28 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALY 28 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 355678999999999999999874
No 450
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.97 E-value=0.019 Score=49.91 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l 46 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLI 46 (236)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999886
No 451
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.96 E-value=0.024 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
.|+++|.+||||||+.+.+.-..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 47999999999999999985433
No 452
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.96 E-value=0.021 Score=53.80 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=25.2
Q ss_pred hhccceEEEEcCCCCchhHHHHHHHHHhcCCC
Q psy8318 7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGY 38 (313)
Q Consensus 7 ~~~~~killlG~~~sGKst~~kq~r~~~~~~~ 38 (313)
.....+|+++|++|||||||++.|-..++..+
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 34456899999999999999999866555443
No 453
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.95 E-value=0.018 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
-|++.|.+||||||+.+++..-+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 46788999999999999975433
No 454
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.95 E-value=0.019 Score=48.19 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-|++||++||||||+++-+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~ 51 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLI 51 (259)
T ss_pred EEEEEcCCCccHHHHHHHH
Confidence 5899999999999998875
No 455
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.95 E-value=0.02 Score=48.61 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+++.|++|||||||+|++-
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 48999999999999999975
No 456
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.019 Score=48.96 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred cEEEECCCCCCHHHHHHHHh
Confidence 78999999999999998873
No 457
>PRK04182 cytidylate kinase; Provisional
Probab=94.91 E-value=0.021 Score=47.12 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.|++.|.+||||||+.+.+-
T Consensus 2 ~I~i~G~~GsGKstia~~la 21 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLA 21 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 458
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.91 E-value=0.066 Score=48.00 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=56.3
Q ss_pred ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318 192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK 271 (313)
Q Consensus 192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~ 271 (313)
..+++-+++|+++.+ .+.+.+.++..+-..+. .++..+|++||+|+..+.-.. . .+....| ...
T Consensus 77 v~n~d~~iiIvs~~~------P~~~~~~ldR~Lv~ae~-------~gi~pvIvlnK~DL~~~~~~~-~-~~~~~~y-~~~ 140 (301)
T COG1162 77 VANNDQAIIVVSLVD------PDFNTNLLDRYLVLAEA-------GGIEPVIVLNKIDLLDDEEAA-V-KELLREY-EDI 140 (301)
T ss_pred ccccceEEEEEeccC------CCCCHHHHHHHHHHHHH-------cCCcEEEEEEccccCcchHHH-H-HHHHHHH-HhC
Confidence 445777888888886 12224444444433332 456667779999987642111 1 2233334 446
Q ss_pred CeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 272 EIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 272 ~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+...+.+||++++++.++..++...
T Consensus 141 gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 141 GYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred CeeEEEecCcCcccHHHHHHHhcCC
Confidence 7789999999999999988877643
No 459
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.91 E-value=0.02 Score=48.05 Aligned_cols=19 Identities=47% Similarity=0.698 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i 38 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHL 38 (190)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999876
No 460
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.90 E-value=0.027 Score=46.36 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHhcCCC
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIHETGY 38 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~~~~~ 38 (313)
.+|+|+|..||||||+-|++-.--+-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3799999999999999999843333444
No 461
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.89 E-value=0.021 Score=47.37 Aligned_cols=19 Identities=47% Similarity=0.744 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l 48 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLL 48 (178)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999986
No 462
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.021 Score=49.12 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i 46 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKML 46 (220)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999886
No 463
>PLN02459 probable adenylate kinase
Probab=94.88 E-value=0.027 Score=49.72 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
.++++++|++||||||+.+.+---++
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999854443
No 464
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.87 E-value=0.02 Score=49.10 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~ 34 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLC 34 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999998863
No 465
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.87 E-value=0.021 Score=44.57 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.2
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
.--+++.|.+|+||||+++.+-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999999974
No 466
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.021 Score=48.77 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l 46 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLI 46 (213)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999876
No 467
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.032 Score=45.27 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=24.0
Q ss_pred hccceEEEEcCCCCchhHHHHHHH-HHhcCCC
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMK-IIHETGY 38 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r-~~~~~~~ 38 (313)
+..+||.+-|.+||||||+++.+. .+...+|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~ 34 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY 34 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence 346799999999999999998874 3444444
No 468
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.021 Score=48.63 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988863
No 469
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.85 E-value=0.021 Score=48.75 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i 48 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLL 48 (214)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999876
No 470
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.83 E-value=0.022 Score=48.86 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 68899999999999999873
No 471
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.83 E-value=0.023 Score=47.32 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 27 ~~~l~G~nGsGKStLl~~i 45 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTL 45 (180)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999998876
No 472
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.82 E-value=0.022 Score=48.84 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999998863
No 473
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.82 E-value=0.022 Score=48.58 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l 46 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCI 46 (213)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999998886
No 474
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.82 E-value=0.023 Score=46.65 Aligned_cols=19 Identities=32% Similarity=0.735 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l 47 (166)
T cd03223 29 RLLITGPSGTGKSSLFRAL 47 (166)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999998886
No 475
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.79 E-value=0.022 Score=49.27 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l 46 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMI 46 (232)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999998886
No 476
>KOG0057|consensus
Probab=94.78 E-value=0.025 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~~ 35 (313)
=||.++|++|||||||++.+=.++.
T Consensus 379 ekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999998754543
No 477
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.78 E-value=0.022 Score=49.66 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l 48 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCI 48 (243)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999998876
No 478
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.78 E-value=0.022 Score=47.79 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhHHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~ 33 (313)
|.+-|.+||||||+.+++...
T Consensus 2 i~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999998543
No 479
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.77 E-value=0.023 Score=48.07 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 29 ~~~l~G~nGsGKSTLl~~i 47 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLI 47 (200)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999876
No 480
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.024 Score=46.82 Aligned_cols=19 Identities=37% Similarity=0.572 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~i~G~nGsGKStLl~~l 46 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKII 46 (173)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999998875
No 481
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.77 E-value=0.024 Score=46.36 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i 46 (163)
T cd03216 28 VHALLGENGAGKSTLMKIL 46 (163)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999998875
No 482
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.76 E-value=0.023 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998763
No 483
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.76 E-value=0.023 Score=48.79 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i 51 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLL 51 (221)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998886
No 484
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.75 E-value=0.033 Score=46.95 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHhc
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~~ 35 (313)
|-+-|++|||||||.+++.....
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999865544
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.023 Score=49.33 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998863
No 486
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.74 E-value=0.024 Score=48.11 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988863
No 487
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.74 E-value=0.023 Score=48.47 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l 47 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLL 47 (211)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998876
No 488
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.74 E-value=0.023 Score=48.15 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=16.5
Q ss_pred EEEEcCCCCchhHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 13 illlG~~~sGKst~~kq~ 30 (313)
+++.|+.||||||+++.+
T Consensus 4 ilI~GptGSGKTTll~~l 21 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999875
No 489
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.74 E-value=0.024 Score=48.48 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l 45 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAI 45 (213)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999886
No 490
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.023 Score=48.29 Aligned_cols=18 Identities=44% Similarity=0.780 Sum_probs=16.5
Q ss_pred EEEEcCCCCchhHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 13 illlG~~~sGKst~~kq~ 30 (313)
+.+||++|+||||++|.+
T Consensus 30 ~ailGPNGAGKSTlLk~L 47 (259)
T COG4559 30 LAILGPNGAGKSTLLKAL 47 (259)
T ss_pred EEEECCCCccHHHHHHHh
Confidence 568999999999999996
No 491
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.025 Score=46.96 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l 46 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCI 46 (178)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5779999999999998886
No 492
>PRK08356 hypothetical protein; Provisional
Probab=94.72 E-value=0.023 Score=47.92 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
..|++.|++||||||+++.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999985
No 493
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.71 E-value=0.024 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
.++++|.+||||||+++.+--+
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999987433
No 494
>PF13479 AAA_24: AAA domain
Probab=94.70 E-value=0.02 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=20.5
Q ss_pred ccceEEEEcCCCCchhHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~ 30 (313)
+.+|+++.|.+|+||||++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5689999999999999999997
No 495
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.023 Score=49.24 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999863
No 496
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.025 Score=47.55 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l 53 (192)
T cd03232 35 LTALMGESGAGKTTLLDVL 53 (192)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999998886
No 497
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.68 E-value=0.025 Score=49.37 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l 46 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTI 46 (243)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999998886
No 498
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.67 E-value=0.03 Score=48.06 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
-++++.|+++||||||+|++-+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4689999999999999999853
No 499
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.67 E-value=0.024 Score=48.65 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988863
No 500
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.66 E-value=0.024 Score=45.47 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=16.9
Q ss_pred EEEEcCCCCchhHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 13 illlG~~~sGKst~~kq~ 30 (313)
+++.|.+|+||||+++++
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 689999999999999997
Done!