Query psy8318
Match_columns 313
No_of_seqs 218 out of 2154
Neff 8.9
Searched_HMMs 29240
Date Sat Aug 17 00:39:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 100.0 5.1E-77 1.8E-81 539.1 26.2 303 5-308 2-327 (327)
2 4fid_A G protein alpha subunit 100.0 3.3E-74 1.1E-78 522.3 23.7 297 7-309 2-337 (340)
3 1cip_A Protein (guanine nucleo 100.0 3.1E-73 1E-77 521.5 27.2 304 5-308 27-353 (353)
4 1azs_C GS-alpha; complex (lyas 100.0 4.6E-71 1.6E-75 512.2 26.7 304 5-309 35-395 (402)
5 1zcb_A G alpha I/13; GTP-bindi 100.0 2E-70 6.9E-75 504.4 24.4 301 6-308 29-361 (362)
6 2xtz_A Guanine nucleotide-bind 100.0 1.3E-68 4.4E-73 490.6 24.2 302 7-308 6-354 (354)
7 4dkx_A RAS-related protein RAB 99.9 2E-27 6.7E-32 203.8 10.6 117 170-300 61-177 (216)
8 1upt_A ARL1, ADP-ribosylation 99.9 5.1E-25 1.7E-29 180.5 16.4 132 156-299 36-169 (171)
9 1r8s_A ADP-ribosylation factor 99.9 2.7E-25 9.2E-30 181.0 14.0 132 156-299 29-162 (164)
10 1fzq_A ADP-ribosylation factor 99.9 2.4E-25 8.3E-30 185.3 13.5 134 155-299 44-178 (181)
11 1f6b_A SAR1; gtpases, N-termin 99.9 2.3E-25 7.7E-30 188.3 13.3 129 157-296 55-196 (198)
12 1m2o_B GTP-binding protein SAR 99.9 5.9E-25 2E-29 184.4 15.6 130 156-296 52-189 (190)
13 2x77_A ADP-ribosylation factor 99.9 9.5E-25 3.2E-29 182.4 15.3 135 156-301 51-186 (189)
14 1zj6_A ADP-ribosylation factor 99.9 8.4E-25 2.9E-29 182.6 14.8 131 156-298 45-177 (187)
15 4bas_A ADP-ribosylation factor 99.9 5.5E-25 1.9E-29 185.0 13.7 135 156-301 48-191 (199)
16 2h57_A ADP-ribosylation factor 99.9 8.4E-25 2.9E-29 183.0 14.1 131 156-298 52-186 (190)
17 2b6h_A ADP-ribosylation factor 99.9 7.5E-25 2.6E-29 184.1 13.4 131 156-298 58-190 (192)
18 1zd9_A ADP-ribosylation factor 99.9 8.6E-25 2.9E-29 182.9 13.3 133 156-299 52-185 (188)
19 2h17_A ADP-ribosylation factor 99.9 1.4E-24 4.7E-29 180.4 14.3 130 155-296 49-180 (181)
20 1moz_A ARL1, ADP-ribosylation 99.9 1.4E-24 4.9E-29 180.0 14.3 134 156-300 47-181 (183)
21 1ksh_A ARF-like protein 2; sma 99.9 2.5E-24 8.4E-29 179.3 15.7 133 156-300 47-181 (186)
22 3t1o_A Gliding protein MGLA; G 99.9 2E-24 6.8E-29 181.0 10.7 136 155-301 53-194 (198)
23 2fu5_C RAS-related protein RAB 99.9 2.4E-24 8E-29 178.9 10.0 125 164-303 48-175 (183)
24 3tw8_B RAS-related protein RAB 99.9 1E-23 3.4E-28 174.2 13.5 128 162-304 47-176 (181)
25 1ky3_A GTP-binding protein YPT 99.9 1.3E-23 4.4E-28 173.6 12.9 119 170-301 57-180 (182)
26 2hup_A RAS-related protein RAB 99.9 1.2E-23 4.2E-28 177.9 13.0 123 163-300 68-194 (201)
27 2hxs_A RAB-26, RAS-related pro 99.9 3.5E-24 1.2E-28 176.7 9.0 131 157-301 37-175 (178)
28 2bme_A RAB4A, RAS-related prot 99.9 1.9E-23 6.6E-28 173.6 13.0 122 164-300 50-174 (186)
29 3q72_A GTP-binding protein RAD 99.9 2.7E-23 9.4E-28 169.4 13.2 119 169-300 47-165 (166)
30 2a5j_A RAS-related protein RAB 99.9 3.4E-23 1.2E-27 173.4 13.4 122 165-301 62-186 (191)
31 2fn4_A P23, RAS-related protei 99.9 2.2E-23 7.6E-28 172.1 11.9 117 171-300 57-173 (181)
32 3oes_A GTPase rhebl1; small GT 99.9 1.8E-23 6.3E-28 176.6 11.5 120 169-301 70-189 (201)
33 3bc1_A RAS-related protein RAB 99.9 3.1E-23 1.1E-27 173.1 12.7 118 170-301 69-187 (195)
34 2efe_B Small GTP-binding prote 99.9 2E-23 6.9E-28 172.6 11.4 115 170-299 60-175 (181)
35 1x3s_A RAS-related protein RAB 99.9 3E-23 1E-27 173.6 12.6 118 169-300 62-179 (195)
36 2oil_A CATX-8, RAS-related pro 99.9 4.3E-23 1.5E-27 172.9 13.3 118 169-301 72-190 (193)
37 3ihw_A Centg3; RAS, centaurin, 99.9 3.1E-23 1.1E-27 173.0 12.4 118 165-300 59-181 (184)
38 1vg8_A RAS-related protein RAB 99.9 3.8E-23 1.3E-27 174.9 12.9 118 171-301 57-177 (207)
39 2bcg_Y Protein YP2, GTP-bindin 99.9 6.3E-23 2.2E-27 173.8 14.2 122 165-300 49-172 (206)
40 3tkl_A RAS-related protein RAB 99.9 5.2E-23 1.8E-27 172.4 13.1 125 163-301 55-181 (196)
41 1wms_A RAB-9, RAB9, RAS-relate 99.9 4.6E-23 1.6E-27 169.9 12.4 130 157-299 38-174 (177)
42 3t5g_A GTP-binding protein RHE 99.9 4.1E-23 1.4E-27 171.0 12.0 118 171-301 54-171 (181)
43 3dz8_A RAS-related protein RAB 99.9 1.1E-23 3.8E-28 176.4 8.6 118 169-300 70-187 (191)
44 3kkq_A RAS-related protein M-R 99.9 2.4E-23 8.2E-28 172.7 10.3 115 171-299 66-182 (183)
45 3o47_A ADP-ribosylation factor 99.9 4.8E-23 1.7E-27 187.5 13.1 133 156-299 194-327 (329)
46 2g6b_A RAS-related protein RAB 99.9 3.5E-23 1.2E-27 171.0 11.1 117 171-301 60-176 (180)
47 2o52_A RAS-related protein RAB 99.9 4.9E-23 1.7E-27 174.0 11.9 122 164-300 65-189 (200)
48 2ew1_A RAS-related protein RAB 99.9 7.4E-23 2.5E-27 173.4 12.6 121 165-300 67-190 (201)
49 1c1y_A RAS-related protein RAP 99.9 5.6E-23 1.9E-27 167.4 11.2 115 170-297 50-165 (167)
50 2gf9_A RAS-related protein RAB 99.9 1.4E-22 4.7E-27 169.4 13.6 116 170-300 70-186 (189)
51 2f7s_A C25KG, RAS-related prot 99.9 4E-23 1.4E-27 176.4 10.4 118 170-301 83-201 (217)
52 1u8z_A RAS-related protein RAL 99.9 4.5E-23 1.5E-27 167.8 10.2 116 170-299 51-167 (168)
53 1z08_A RAS-related protein RAB 99.9 6E-23 2E-27 167.9 10.9 113 171-298 55-168 (170)
54 2nzj_A GTP-binding protein REM 99.9 9.9E-23 3.4E-27 167.4 12.1 117 171-301 52-171 (175)
55 1ek0_A Protein (GTP-binding pr 99.9 3.4E-23 1.2E-27 169.0 9.3 114 170-297 51-167 (170)
56 2bov_A RAla, RAS-related prote 99.9 1.2E-22 4E-27 171.6 12.9 118 171-302 62-180 (206)
57 2il1_A RAB12; G-protein, GDP, 99.9 6.8E-23 2.3E-27 171.9 11.1 123 164-300 66-191 (192)
58 2a9k_A RAS-related protein RAL 99.9 9E-23 3.1E-27 169.3 11.7 118 171-302 66-184 (187)
59 2q3h_A RAS homolog gene family 99.9 1.7E-22 5.9E-27 170.3 13.6 115 171-301 68-197 (201)
60 1r2q_A RAS-related protein RAB 99.9 1.2E-22 3.9E-27 165.9 12.0 113 170-297 54-167 (170)
61 3q85_A GTP-binding protein REM 99.9 9.5E-23 3.3E-27 166.7 11.4 118 170-300 50-168 (169)
62 2fg5_A RAB-22B, RAS-related pr 99.9 1.5E-22 5E-27 169.8 12.8 116 169-299 70-186 (192)
63 3lvq_E ARF-GAP with SH3 domain 99.9 2.7E-22 9.2E-27 192.4 16.1 134 156-300 351-485 (497)
64 1z06_A RAS-related protein RAB 99.9 6.8E-23 2.3E-27 171.2 10.5 122 164-298 60-187 (189)
65 3reg_A RHO-like small GTPase; 99.9 7.4E-23 2.5E-27 171.7 10.7 116 170-300 70-189 (194)
66 1z2a_A RAS-related protein RAB 99.9 4.9E-23 1.7E-27 167.9 9.3 114 170-299 53-167 (168)
67 1z0f_A RAB14, member RAS oncog 99.9 8.1E-23 2.8E-27 168.4 10.7 115 170-299 63-178 (179)
68 1zbd_A Rabphilin-3A; G protein 99.9 1.4E-22 4.8E-27 171.1 12.3 117 170-301 56-173 (203)
69 3q3j_B RHO-related GTP-binding 99.9 6.2E-23 2.1E-27 175.4 10.0 116 169-300 73-204 (214)
70 1z0j_A RAB-22, RAS-related pro 99.9 2.5E-22 8.4E-27 164.1 12.9 114 170-297 54-167 (170)
71 1g16_A RAS-related protein SEC 99.9 1.4E-22 4.8E-27 165.5 11.2 121 165-300 44-166 (170)
72 4dsu_A GTPase KRAS, isoform 2B 99.9 1.7E-22 5.9E-27 168.0 12.0 117 171-301 52-168 (189)
73 3c5c_A RAS-like protein 12; GD 99.9 5.2E-23 1.8E-27 172.0 8.8 115 169-298 67-185 (187)
74 1kao_A RAP2A; GTP-binding prot 99.9 8.5E-23 2.9E-27 166.0 9.7 116 170-299 50-166 (167)
75 3cpj_B GTP-binding protein YPT 99.9 1.9E-22 6.4E-27 173.3 12.3 123 163-300 52-177 (223)
76 2yc2_C IFT27, small RAB-relate 99.9 4.4E-23 1.5E-27 174.4 7.8 121 170-304 72-197 (208)
77 3clv_A RAB5 protein, putative; 99.9 3.6E-22 1.2E-26 167.8 13.3 113 171-300 93-205 (208)
78 3cbq_A GTP-binding protein REM 99.9 1.4E-22 4.8E-27 170.7 10.7 117 170-300 71-189 (195)
79 2g3y_A GTP-binding protein GEM 99.9 3.9E-22 1.3E-26 170.3 13.0 117 171-300 87-204 (211)
80 2atv_A RERG, RAS-like estrogen 99.9 1.8E-22 6.3E-27 169.7 10.8 116 170-300 75-192 (196)
81 3con_A GTPase NRAS; structural 99.9 3.6E-22 1.2E-26 166.7 12.4 120 171-304 69-188 (190)
82 1gwn_A RHO-related GTP-binding 99.9 2.6E-22 9E-27 170.4 11.4 115 170-299 75-204 (205)
83 2atx_A Small GTP binding prote 99.9 4.6E-22 1.6E-26 166.7 12.4 112 171-298 66-192 (194)
84 3r7w_B Gtpase2, GTP-binding pr 99.9 8.6E-23 2.9E-27 183.6 8.3 129 156-298 32-173 (331)
85 2fh5_B SR-beta, signal recogni 99.9 7.5E-22 2.5E-26 168.1 13.6 122 166-296 46-213 (214)
86 2iwr_A Centaurin gamma 1; ANK 99.9 8.6E-22 2.9E-26 162.6 13.2 115 170-302 53-172 (178)
87 2y8e_A RAB-protein 6, GH09086P 99.9 2.5E-22 8.6E-27 165.4 9.9 120 164-298 54-176 (179)
88 3l0i_B RAS-related protein RAB 99.9 3.2E-23 1.1E-27 174.9 4.1 123 162-298 71-195 (199)
89 1m7b_A RND3/RHOE small GTP-bin 99.9 4.5E-22 1.6E-26 165.6 11.0 115 170-299 54-183 (184)
90 3cph_A RAS-related protein SEC 99.9 5.8E-22 2E-26 168.4 11.7 123 163-300 59-183 (213)
91 2j0v_A RAC-like GTP-binding pr 99.9 3.4E-22 1.2E-26 170.0 10.0 115 170-300 56-181 (212)
92 3gj0_A GTP-binding nuclear pro 99.9 2.5E-22 8.5E-27 172.1 8.9 115 169-300 62-176 (221)
93 2p5s_A RAS and EF-hand domain 99.9 2.9E-22 1E-26 168.9 8.8 115 170-298 76-196 (199)
94 3bwd_D RAC-like GTP-binding pr 99.9 4.2E-22 1.4E-26 164.8 9.2 114 169-298 54-180 (182)
95 2j1l_A RHO-related GTP-binding 99.9 1E-21 3.5E-26 167.7 11.9 116 170-301 81-211 (214)
96 4gzl_A RAS-related C3 botulinu 99.9 5E-22 1.7E-26 168.4 9.8 113 170-297 77-203 (204)
97 2ce2_X GTPase HRAS; signaling 99.9 6.4E-22 2.2E-26 160.5 10.0 115 170-298 50-164 (166)
98 4djt_A GTP-binding nuclear pro 99.9 5.1E-22 1.7E-26 169.6 9.4 116 171-300 61-176 (218)
99 1mh1_A RAC1; GTP-binding, GTPa 99.9 2E-21 6.9E-26 161.1 12.2 114 170-299 52-180 (186)
100 2cjw_A GTP-binding protein GEM 99.9 4E-21 1.4E-25 161.4 14.2 117 171-300 56-173 (192)
101 2erx_A GTP-binding protein DI- 99.9 5.6E-22 1.9E-26 162.1 8.5 116 170-298 50-166 (172)
102 2gco_A H9, RHO-related GTP-bin 99.9 2E-21 6.7E-26 164.2 11.7 113 170-298 72-199 (201)
103 2fv8_A H6, RHO-related GTP-bin 99.9 4.7E-21 1.6E-25 162.5 13.8 118 171-300 73-201 (207)
104 2zej_A Dardarin, leucine-rich 99.9 4.7E-22 1.6E-26 165.7 7.1 116 169-299 54-178 (184)
105 2lkc_A Translation initiation 99.9 6.7E-21 2.3E-25 156.9 13.6 122 164-302 48-174 (178)
106 2gf0_A GTP-binding protein DI- 99.8 7E-22 2.4E-26 165.9 6.6 117 170-300 55-172 (199)
107 3llu_A RAS-related GTP-binding 99.8 3.3E-21 1.1E-25 162.1 9.2 118 169-297 67-195 (196)
108 3th5_A RAS-related C3 botulinu 99.7 3.9E-22 1.3E-26 168.7 0.0 117 169-297 76-203 (204)
109 2f9l_A RAB11B, member RAS onco 99.8 1.9E-19 6.4E-24 151.7 13.8 123 164-300 45-169 (199)
110 2wji_A Ferrous iron transport 99.8 1.1E-19 3.7E-24 148.6 10.6 113 164-297 43-163 (165)
111 2dyk_A GTP-binding protein; GT 99.8 1.9E-19 6.5E-24 145.6 11.1 113 162-297 40-160 (161)
112 2qu8_A Putative nucleolar GTP- 99.8 1.9E-19 6.5E-24 155.0 11.1 130 160-301 65-207 (228)
113 2wkq_A NPH1-1, RAS-related C3 99.8 2.7E-19 9.3E-24 162.1 12.6 113 171-299 203-330 (332)
114 3r7w_A Gtpase1, GTP-binding pr 99.8 9.6E-20 3.3E-24 164.2 8.7 129 156-298 36-180 (307)
115 3c5h_A Glucocorticoid receptor 99.8 4.6E-20 1.6E-24 161.9 5.8 115 169-297 93-253 (255)
116 2gj8_A MNME, tRNA modification 99.8 4.6E-19 1.6E-23 146.0 10.3 116 160-298 41-165 (172)
117 1oix_A RAS-related protein RAB 99.8 1.8E-18 6.2E-23 144.9 12.5 121 163-297 68-190 (191)
118 2wjg_A FEOB, ferrous iron tran 99.8 6.8E-19 2.3E-23 146.3 9.0 119 162-301 45-171 (188)
119 1svi_A GTP-binding protein YSX 99.8 7.8E-19 2.7E-23 146.9 9.2 109 171-297 69-193 (195)
120 2cxx_A Probable GTP-binding pr 99.8 2.3E-19 7.8E-24 149.2 3.2 119 172-301 45-186 (190)
121 3pqc_A Probable GTP-binding pr 99.7 1.6E-18 5.3E-23 144.6 7.4 111 170-298 67-193 (195)
122 3l82_B F-box only protein 4; T 99.7 9.9E-19 3.4E-23 146.0 3.5 112 177-300 108-224 (227)
123 3dpu_A RAB family protein; roc 99.7 6.9E-18 2.4E-22 163.2 9.0 112 169-299 96-208 (535)
124 3a1s_A Iron(II) transport prot 99.7 1.3E-17 4.4E-22 146.5 9.4 118 160-298 41-166 (258)
125 3b1v_A Ferrous iron uptake tra 99.7 1.7E-17 5.9E-22 146.7 9.7 107 170-297 48-162 (272)
126 1nrj_B SR-beta, signal recogni 99.7 1.4E-18 4.9E-23 148.1 1.6 75 169-253 53-135 (218)
127 4dhe_A Probable GTP-binding pr 99.7 1.2E-17 4.1E-22 142.8 5.3 117 169-300 77-212 (223)
128 3iby_A Ferrous iron transport 99.7 2.1E-17 7.3E-22 144.9 6.9 116 160-296 37-164 (256)
129 3i8s_A Ferrous iron transport 99.7 4.1E-17 1.4E-21 144.6 7.0 117 161-298 40-168 (274)
130 3k53_A Ferrous iron transport 99.7 1.8E-16 6.1E-21 140.2 10.7 120 160-299 39-166 (271)
131 3iev_A GTP-binding protein ERA 99.7 1.8E-16 6.2E-21 142.8 10.6 115 165-298 52-181 (308)
132 3l2o_B F-box only protein 4; s 99.7 1.6E-17 5.4E-22 145.3 2.4 112 177-300 193-309 (312)
133 1wf3_A GTP-binding protein; GT 99.7 2.3E-16 7.9E-21 141.5 9.3 112 167-297 51-171 (301)
134 3gee_A MNME, tRNA modification 99.6 2.4E-16 8.1E-21 149.6 8.3 119 161-298 271-397 (476)
135 3qq5_A Small GTP-binding prote 99.6 1.4E-16 4.7E-21 149.0 6.1 117 160-298 71-195 (423)
136 1xzp_A Probable tRNA modificat 99.6 6.8E-16 2.3E-20 146.7 9.7 116 161-299 281-405 (482)
137 2ged_A SR-beta, signal recogni 99.6 3.6E-16 1.2E-20 130.4 6.8 75 169-253 89-171 (193)
138 1mky_A Probable GTP-binding pr 99.6 1.2E-15 4E-20 144.0 10.1 117 161-299 39-166 (439)
139 2hjg_A GTP-binding protein ENG 99.6 7E-16 2.4E-20 145.4 8.3 111 165-298 45-164 (436)
140 3izy_P Translation initiation 99.6 8.2E-16 2.8E-20 147.4 8.6 113 169-298 50-167 (537)
141 2xtp_A GTPase IMAP family memb 99.6 1.2E-15 4.2E-20 133.7 9.0 130 159-300 59-209 (260)
142 3geh_A MNME, tRNA modification 99.6 6.4E-15 2.2E-19 139.3 14.3 112 165-300 266-385 (462)
143 4dcu_A GTP-binding protein ENG 99.6 7.7E-16 2.6E-20 146.0 7.5 119 164-300 236-370 (456)
144 2e87_A Hypothetical protein PH 99.6 6.3E-15 2.2E-19 135.3 12.9 126 158-300 201-337 (357)
145 2hjg_A GTP-binding protein ENG 99.6 5.4E-16 1.8E-20 146.2 5.8 121 162-300 214-350 (436)
146 1s0u_A EIF-2-gamma, translatio 99.6 5.6E-15 1.9E-19 138.1 10.7 114 171-298 81-197 (408)
147 1lnz_A SPO0B-associated GTP-bi 99.6 2.2E-15 7.5E-20 137.3 6.9 122 166-299 200-330 (342)
148 3sjy_A Translation initiation 99.6 7.8E-15 2.7E-19 136.9 10.5 114 171-298 75-191 (403)
149 3tr5_A RF-3, peptide chain rel 99.6 2E-14 6.7E-19 138.2 13.6 81 157-252 68-148 (528)
150 1zo1_I IF2, translation initia 99.6 7.3E-15 2.5E-19 139.7 9.9 113 167-295 47-163 (501)
151 3j2k_7 ERF3, eukaryotic polype 99.6 1.4E-14 4.7E-19 136.6 11.0 128 156-291 80-217 (439)
152 2qtf_A Protein HFLX, GTP-bindi 99.5 4.5E-14 1.5E-18 129.8 13.3 132 157-300 212-355 (364)
153 1kk1_A EIF2gamma; initiation o 99.5 1.2E-14 4.1E-19 135.9 9.4 114 171-298 83-199 (410)
154 4dcu_A GTP-binding protein ENG 99.5 6.8E-15 2.3E-19 139.4 7.4 110 167-298 67-184 (456)
155 3t5d_A Septin-7; GTP-binding p 99.5 2.1E-15 7.2E-20 133.5 2.8 123 156-297 46-202 (274)
156 2elf_A Protein translation elo 99.5 2.7E-14 9.4E-19 131.5 10.2 126 156-299 45-180 (370)
157 3lxw_A GTPase IMAP family memb 99.5 3.2E-14 1.1E-18 124.0 9.9 131 158-300 57-209 (247)
158 1jny_A EF-1-alpha, elongation 99.5 3.2E-14 1.1E-18 134.0 10.6 122 156-291 69-205 (435)
159 1wb1_A Translation elongation 99.5 1.1E-14 3.9E-19 138.6 7.2 127 157-298 59-188 (482)
160 2ywe_A GTP-binding protein LEP 99.5 4.2E-14 1.4E-18 137.2 10.7 109 171-298 73-183 (600)
161 1g7s_A Translation initiation 99.5 1.1E-13 3.7E-18 134.6 13.5 113 171-298 70-217 (594)
162 3lxx_A GTPase IMAP family memb 99.5 4.2E-14 1.4E-18 122.4 9.4 127 158-299 65-214 (239)
163 3cb4_D GTP-binding protein LEP 99.5 2.9E-14 9.9E-19 138.6 8.9 109 171-298 71-181 (599)
164 1d2e_A Elongation factor TU (E 99.5 3E-14 1E-18 132.7 8.6 126 157-297 52-193 (397)
165 1mky_A Probable GTP-binding pr 99.5 3.7E-14 1.3E-18 133.7 9.3 119 164-300 221-356 (439)
166 1zun_B Sulfate adenylate trans 99.5 4.1E-14 1.4E-18 133.2 8.5 121 157-291 90-216 (434)
167 3p26_A Elongation factor 1 alp 99.5 3.9E-14 1.3E-18 135.1 7.9 125 157-288 97-227 (483)
168 2c78_A Elongation factor TU-A; 99.5 2.5E-14 8.5E-19 133.6 6.2 111 160-285 64-180 (405)
169 1u0l_A Probable GTPase ENGC; p 99.5 5.5E-14 1.9E-18 126.0 8.1 106 171-295 63-169 (301)
170 2aka_B Dynamin-1; fusion prote 99.5 7.4E-14 2.5E-18 124.6 8.8 111 170-296 124-250 (299)
171 1ega_A Protein (GTP-binding pr 99.5 7.1E-14 2.4E-18 125.3 8.4 112 166-297 51-173 (301)
172 1r5b_A Eukaryotic peptide chai 99.5 4.1E-14 1.4E-18 134.3 5.8 127 155-290 105-243 (467)
173 2qag_A Septin-2, protein NEDD5 99.5 1.7E-14 5.7E-19 132.6 2.9 109 171-300 95-234 (361)
174 1f60_A Elongation factor EEF1A 99.4 2.4E-13 8.1E-18 128.8 8.5 122 157-289 71-202 (458)
175 1dar_A EF-G, elongation factor 99.4 1.4E-12 4.7E-17 129.4 13.1 83 156-253 62-144 (691)
176 3izq_1 HBS1P, elongation facto 99.4 2.8E-13 9.5E-18 132.4 8.0 125 158-289 232-362 (611)
177 2h5e_A Peptide chain release f 99.4 3.3E-12 1.1E-16 122.8 14.1 81 157-252 68-148 (529)
178 3def_A T7I23.11 protein; chlor 99.4 1.4E-12 4.7E-17 114.5 9.1 82 160-251 73-164 (262)
179 3avx_A Elongation factor TS, e 99.4 6.1E-13 2.1E-17 135.6 7.1 119 164-297 352-484 (1289)
180 2dy1_A Elongation factor G; tr 99.4 3.1E-12 1.1E-16 126.4 11.8 77 160-251 63-139 (665)
181 3mca_A HBS1, elongation factor 99.3 3.4E-13 1.2E-17 131.4 3.8 121 157-287 241-371 (592)
182 2rdo_7 EF-G, elongation factor 99.3 1.1E-11 3.6E-16 123.2 13.4 83 156-253 60-149 (704)
183 2xex_A Elongation factor G; GT 99.3 5.5E-12 1.9E-16 125.0 11.0 83 156-253 60-142 (693)
184 1pui_A ENGB, probable GTP-bind 99.3 5.3E-12 1.8E-16 106.4 8.7 110 172-298 73-198 (210)
185 1jwy_B Dynamin A GTPase domain 99.3 1.4E-11 4.7E-16 110.7 10.5 116 169-298 129-261 (315)
186 2j69_A Bacterial dynamin-like 99.3 5E-11 1.7E-15 118.2 14.7 115 171-299 174-325 (695)
187 3t34_A Dynamin-related protein 99.2 1.8E-11 6.1E-16 112.4 9.5 113 169-297 134-259 (360)
188 1udx_A The GTP-binding protein 99.2 1.7E-11 5.7E-16 114.2 9.4 115 171-300 205-326 (416)
189 1h65_A Chloroplast outer envel 99.2 2.8E-11 9.6E-16 106.6 10.4 77 165-252 81-168 (270)
190 2qnr_A Septin-2, protein NEDD5 99.2 4.5E-12 1.5E-16 113.6 1.4 108 171-299 76-214 (301)
191 2x2e_A Dynamin-1; nitration, h 99.1 4.3E-11 1.5E-15 109.5 6.3 109 170-295 129-254 (353)
192 3p32_A Probable GTPase RV1496/ 99.1 3E-11 1E-15 110.7 3.2 109 169-299 170-284 (355)
193 1n0u_A EF-2, elongation factor 99.1 1.8E-10 6.2E-15 116.5 9.2 68 170-252 97-164 (842)
194 2wsm_A Hydrogenase expression/ 99.1 1.8E-10 6.3E-15 97.8 7.7 106 169-299 107-214 (221)
195 1yrb_A ATP(GTP)binding protein 99.1 1.9E-10 6.4E-15 100.4 6.6 114 171-298 109-256 (262)
196 3vqt_A RF-3, peptide chain rel 99.0 9.1E-10 3.1E-14 106.2 11.5 84 155-253 84-167 (548)
197 1wxq_A GTP-binding protein; st 99.0 1.9E-10 6.6E-15 106.7 4.8 37 171-207 71-114 (397)
198 2hf9_A Probable hydrogenase ni 99.0 4.9E-10 1.7E-14 95.5 6.0 59 239-299 165-224 (226)
199 2www_A Methylmalonic aciduria 99.0 1.4E-09 4.8E-14 99.2 8.7 108 169-298 165-278 (349)
200 2qag_C Septin-7; cell cycle, c 98.9 3.3E-10 1.1E-14 105.6 3.2 106 171-296 88-224 (418)
201 1jal_A YCHF protein; nucleotid 98.9 8.7E-09 3E-13 94.0 10.9 37 170-206 65-108 (363)
202 2qpt_A EH domain-containing pr 98.8 3.6E-09 1.2E-13 102.1 7.5 68 171-252 154-232 (550)
203 2dby_A GTP-binding protein; GD 98.8 7.3E-09 2.5E-13 95.0 7.3 37 170-206 68-111 (368)
204 2p67_A LAO/AO transport system 98.8 9.3E-09 3.2E-13 93.5 7.9 109 168-298 146-260 (341)
205 3j25_A Tetracycline resistance 98.7 6.9E-09 2.4E-13 102.0 4.4 83 156-253 52-134 (638)
206 2yv5_A YJEQ protein; hydrolase 98.6 2.6E-08 9E-13 89.0 5.7 97 180-294 65-164 (302)
207 3zvr_A Dynamin-1; hydrolase, D 98.5 2.2E-07 7.5E-12 92.2 10.1 109 170-295 149-274 (772)
208 3h2y_A GTPase family protein; 98.5 1.2E-08 4E-13 93.8 0.2 100 180-297 55-158 (368)
209 2qm8_A GTPase/ATPase; G protei 98.4 4.6E-07 1.6E-11 82.1 7.8 109 168-298 145-260 (337)
210 3ec1_A YQEH GTPase; atnos1, at 98.4 1.2E-07 4.1E-12 87.1 3.3 101 179-297 56-160 (369)
211 2ohf_A Protein OLA1, GTP-bindi 98.4 6.3E-07 2.2E-11 82.5 7.7 37 171-207 86-129 (396)
212 4fn5_A EF-G 1, elongation fact 98.3 2E-06 6.7E-11 85.6 10.3 69 170-253 84-152 (709)
213 4a9a_A Ribosome-interacting GT 98.1 5.3E-06 1.8E-10 76.0 7.4 77 163-251 111-195 (376)
214 2j37_W Signal recognition part 97.9 1E-05 3.5E-10 76.9 5.4 108 169-296 182-310 (504)
215 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 6.5E-05 2.2E-09 69.2 7.1 36 171-206 85-127 (392)
216 1puj_A YLQF, conserved hypothe 97.7 1.5E-05 5.2E-10 70.2 2.4 101 177-299 5-106 (282)
217 1zp6_A Hypothetical protein AT 97.0 0.00033 1.1E-08 57.3 2.7 30 1-31 1-30 (191)
218 3dm5_A SRP54, signal recogniti 97.0 0.0016 5.4E-08 60.7 7.5 22 10-31 100-121 (443)
219 1bif_A 6-phosphofructo-2-kinas 96.9 0.00022 7.5E-09 67.4 1.7 36 171-206 87-132 (469)
220 2v3c_C SRP54, signal recogniti 96.8 0.0063 2.2E-07 56.7 9.9 65 169-251 179-251 (432)
221 3kl4_A SRP54, signal recogniti 96.5 0.0033 1.1E-07 58.5 6.2 22 10-31 97-118 (433)
222 1ye8_A Protein THEP1, hypothet 96.5 0.0014 4.9E-08 53.3 3.0 20 12-31 2-21 (178)
223 1kag_A SKI, shikimate kinase I 96.4 0.0013 4.6E-08 52.6 2.6 24 12-35 6-29 (173)
224 4gp7_A Metallophosphoesterase; 96.3 0.0016 5.6E-08 52.5 2.5 18 12-29 11-28 (171)
225 3cnl_A YLQF, putative uncharac 96.3 0.00027 9.1E-09 61.5 -2.4 85 186-295 13-97 (262)
226 1knq_A Gluconate kinase; ALFA/ 96.3 0.002 6.8E-08 51.8 2.8 24 11-34 9-32 (175)
227 1kgd_A CASK, peripheral plasma 96.2 0.0021 7.3E-08 52.2 2.8 22 12-33 7-28 (180)
228 1lvg_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 52.0 3.5 23 12-34 6-28 (198)
229 3tr0_A Guanylate kinase, GMP k 96.1 0.0025 8.7E-08 52.5 2.8 22 12-33 9-30 (205)
230 3a00_A Guanylate kinase, GMP k 96.1 0.0027 9.4E-08 51.8 2.8 22 13-34 4-25 (186)
231 3lw7_A Adenylate kinase relate 96.1 0.0029 9.9E-08 50.3 2.8 19 12-30 3-21 (179)
232 3fb4_A Adenylate kinase; psych 96.0 0.0032 1.1E-07 52.5 3.0 22 11-32 1-22 (216)
233 3kb2_A SPBC2 prophage-derived 96.0 0.0031 1.1E-07 50.2 2.8 22 12-33 3-24 (173)
234 1ly1_A Polynucleotide kinase; 96.0 0.0031 1.1E-07 50.6 2.8 21 12-32 4-24 (181)
235 3c8u_A Fructokinase; YP_612366 96.0 0.0034 1.1E-07 52.2 2.9 26 9-34 21-46 (208)
236 3dl0_A Adenylate kinase; phosp 96.0 0.0035 1.2E-07 52.3 3.0 21 11-31 1-21 (216)
237 2bdt_A BH3686; alpha-beta prot 96.0 0.0034 1.2E-07 51.1 2.8 20 12-31 4-23 (189)
238 1t9h_A YLOQ, probable GTPase E 96.0 0.00073 2.5E-08 60.1 -1.3 88 187-291 79-169 (307)
239 1aky_A Adenylate kinase; ATP:A 95.9 0.0037 1.3E-07 52.3 3.0 26 9-34 3-28 (220)
240 1nn5_A Similar to deoxythymidy 95.9 0.004 1.4E-07 51.6 3.1 24 9-32 8-31 (215)
241 3cm0_A Adenylate kinase; ATP-b 95.9 0.0039 1.3E-07 50.5 3.0 23 10-32 4-26 (186)
242 2c95_A Adenylate kinase 1; tra 95.9 0.0053 1.8E-07 50.0 3.8 27 8-34 7-33 (196)
243 1y63_A LMAJ004144AAA protein; 95.9 0.0038 1.3E-07 50.8 2.9 25 9-33 9-33 (184)
244 2ehv_A Hypothetical protein PH 95.9 0.0037 1.3E-07 53.1 2.8 20 12-31 32-51 (251)
245 3sr0_A Adenylate kinase; phosp 95.9 0.0052 1.8E-07 51.3 3.6 25 11-35 1-25 (206)
246 2j41_A Guanylate kinase; GMP, 95.9 0.0039 1.3E-07 51.3 2.8 22 11-32 7-28 (207)
247 3sop_A Neuronal-specific septi 95.9 0.0037 1.3E-07 54.4 2.8 22 10-31 2-23 (270)
248 1qhx_A CPT, protein (chloramph 95.9 0.0044 1.5E-07 49.8 3.1 23 12-34 5-27 (178)
249 4eun_A Thermoresistant glucoki 95.9 0.004 1.4E-07 51.4 2.8 24 11-34 30-53 (200)
250 1htw_A HI0065; nucleotide-bind 95.9 0.0042 1.4E-07 49.5 2.8 20 12-31 35-54 (158)
251 2wwf_A Thymidilate kinase, put 95.8 0.0042 1.4E-07 51.4 2.9 24 9-32 9-32 (212)
252 1znw_A Guanylate kinase, GMP k 95.8 0.0043 1.5E-07 51.5 2.8 20 12-31 22-41 (207)
253 2jaq_A Deoxyguanosine kinase; 95.8 0.0045 1.5E-07 50.8 2.9 22 12-33 2-23 (205)
254 2bbw_A Adenylate kinase 4, AK4 95.8 0.0043 1.5E-07 52.9 2.9 22 10-31 27-48 (246)
255 3t61_A Gluconokinase; PSI-biol 95.8 0.0045 1.5E-07 51.0 2.8 24 11-34 19-42 (202)
256 1z6g_A Guanylate kinase; struc 95.8 0.0044 1.5E-07 52.0 2.8 23 12-34 25-47 (218)
257 1s96_A Guanylate kinase, GMP k 95.8 0.0044 1.5E-07 52.2 2.8 22 12-33 18-39 (219)
258 2qor_A Guanylate kinase; phosp 95.8 0.0045 1.5E-07 51.2 2.8 22 11-32 13-34 (204)
259 3asz_A Uridine kinase; cytidin 95.8 0.0063 2.1E-07 50.4 3.7 27 9-35 5-31 (211)
260 3tau_A Guanylate kinase, GMP k 95.7 0.0057 2E-07 50.8 3.3 23 12-34 10-32 (208)
261 1ex7_A Guanylate kinase; subst 95.7 0.0055 1.9E-07 50.3 3.0 20 13-32 4-23 (186)
262 2if2_A Dephospho-COA kinase; a 95.7 0.0051 1.7E-07 50.7 2.9 21 12-32 3-23 (204)
263 1nks_A Adenylate kinase; therm 95.7 0.0052 1.8E-07 49.8 2.9 22 12-33 3-24 (194)
264 3vaa_A Shikimate kinase, SK; s 95.7 0.0066 2.2E-07 50.0 3.5 27 11-37 26-52 (199)
265 1uf9_A TT1252 protein; P-loop, 95.7 0.0053 1.8E-07 50.4 2.9 27 7-33 5-31 (203)
266 3tlx_A Adenylate kinase 2; str 95.7 0.007 2.4E-07 51.7 3.6 27 8-34 27-53 (243)
267 4a74_A DNA repair and recombin 95.7 0.0052 1.8E-07 51.4 2.7 20 12-31 27-46 (231)
268 1tev_A UMP-CMP kinase; ploop, 95.7 0.0058 2E-07 49.6 3.0 23 10-32 3-25 (196)
269 2iyv_A Shikimate kinase, SK; t 95.6 0.0071 2.4E-07 48.9 3.5 24 12-35 4-27 (184)
270 1e4v_A Adenylate kinase; trans 95.6 0.0071 2.4E-07 50.4 3.5 24 11-34 1-24 (214)
271 2pt5_A Shikimate kinase, SK; a 95.6 0.0064 2.2E-07 48.3 3.1 23 12-34 2-24 (168)
272 3tif_A Uncharacterized ABC tra 95.6 0.0055 1.9E-07 52.2 2.8 19 12-30 33-51 (235)
273 2bwj_A Adenylate kinase 5; pho 95.6 0.0075 2.6E-07 49.2 3.6 27 8-34 10-36 (199)
274 1cke_A CK, MSSA, protein (cyti 95.6 0.0074 2.5E-07 50.5 3.6 24 11-34 6-29 (227)
275 3uie_A Adenylyl-sulfate kinase 95.6 0.0057 1.9E-07 50.4 2.8 22 10-31 25-46 (200)
276 2rhm_A Putative kinase; P-loop 95.6 0.006 2E-07 49.6 2.9 23 10-32 5-27 (193)
277 3trf_A Shikimate kinase, SK; a 95.6 0.0062 2.1E-07 49.3 3.0 23 12-34 7-29 (185)
278 1via_A Shikimate kinase; struc 95.6 0.006 2.1E-07 49.0 2.8 23 12-34 6-28 (175)
279 1kht_A Adenylate kinase; phosp 95.6 0.0063 2.2E-07 49.3 2.9 22 11-32 4-25 (192)
280 2cdn_A Adenylate kinase; phosp 95.5 0.0085 2.9E-07 49.3 3.6 28 8-35 18-45 (201)
281 2plr_A DTMP kinase, probable t 95.5 0.0073 2.5E-07 49.8 3.2 24 10-33 4-27 (213)
282 1ak2_A Adenylate kinase isoenz 95.5 0.0069 2.4E-07 51.2 3.0 28 7-34 13-40 (233)
283 2pcj_A ABC transporter, lipopr 95.5 0.0064 2.2E-07 51.4 2.7 19 12-30 32-50 (224)
284 1zd8_A GTP:AMP phosphotransfer 95.4 0.0071 2.4E-07 50.9 2.9 23 10-32 7-29 (227)
285 1jjv_A Dephospho-COA kinase; P 95.4 0.0076 2.6E-07 49.8 3.0 21 12-32 4-24 (206)
286 1sgw_A Putative ABC transporte 95.4 0.0073 2.5E-07 50.7 2.8 19 12-30 37-55 (214)
287 3b85_A Phosphate starvation-in 95.4 0.0071 2.4E-07 50.5 2.7 20 12-31 24-43 (208)
288 3be4_A Adenylate kinase; malar 95.4 0.0085 2.9E-07 50.1 3.2 25 10-34 5-29 (217)
289 2onk_A Molybdate/tungstate ABC 95.4 0.0073 2.5E-07 51.6 2.8 19 12-30 26-44 (240)
290 3ec2_A DNA replication protein 95.4 0.0067 2.3E-07 49.0 2.4 21 11-31 39-59 (180)
291 2v54_A DTMP kinase, thymidylat 95.4 0.0088 3E-07 49.1 3.2 24 10-33 4-27 (204)
292 2rcn_A Probable GTPase ENGC; Y 95.4 0.011 3.9E-07 53.5 4.1 54 238-293 160-213 (358)
293 3iij_A Coilin-interacting nucl 95.4 0.008 2.8E-07 48.4 2.8 23 10-32 11-33 (180)
294 2pbr_A DTMP kinase, thymidylat 95.4 0.009 3.1E-07 48.5 3.1 21 12-32 2-22 (195)
295 2cbz_A Multidrug resistance-as 95.3 0.0083 2.8E-07 51.1 3.0 19 12-30 33-51 (237)
296 1zak_A Adenylate kinase; ATP:A 95.3 0.008 2.7E-07 50.3 2.8 25 10-34 5-29 (222)
297 3gfo_A Cobalt import ATP-bindi 95.3 0.0078 2.7E-07 52.5 2.8 19 12-30 36-54 (275)
298 2ff7_A Alpha-hemolysin translo 95.3 0.0086 2.9E-07 51.4 3.0 19 12-30 37-55 (247)
299 1ji0_A ABC transporter; ATP bi 95.3 0.0085 2.9E-07 51.1 2.8 19 12-30 34-52 (240)
300 1g6h_A High-affinity branched- 95.3 0.0085 2.9E-07 51.7 2.8 19 12-30 35-53 (257)
301 1ukz_A Uridylate kinase; trans 95.3 0.0089 3E-07 49.1 2.9 23 10-32 15-37 (203)
302 1b0u_A Histidine permease; ABC 95.3 0.0085 2.9E-07 51.9 2.8 19 12-30 34-52 (262)
303 2p5t_B PEZT; postsegregational 95.3 0.0092 3.1E-07 51.2 3.0 27 9-35 31-57 (253)
304 2eyu_A Twitching motility prot 95.2 0.0087 3E-07 51.8 2.8 20 12-31 27-46 (261)
305 2xb4_A Adenylate kinase; ATP-b 95.2 0.012 4.1E-07 49.4 3.6 23 12-34 2-24 (223)
306 3ney_A 55 kDa erythrocyte memb 95.2 0.0091 3.1E-07 49.4 2.8 23 12-34 21-43 (197)
307 1mv5_A LMRA, multidrug resista 95.2 0.0092 3.2E-07 51.0 2.9 19 12-30 30-48 (243)
308 2z0h_A DTMP kinase, thymidylat 95.2 0.01 3.4E-07 48.4 3.0 21 12-32 2-22 (197)
309 1vpl_A ABC transporter, ATP-bi 95.2 0.0091 3.1E-07 51.5 2.8 19 12-30 43-61 (256)
310 4g1u_C Hemin import ATP-bindin 95.2 0.0091 3.1E-07 51.8 2.8 19 12-30 39-57 (266)
311 2qi9_C Vitamin B12 import ATP- 95.2 0.0094 3.2E-07 51.2 2.8 19 12-30 28-46 (249)
312 2pze_A Cystic fibrosis transme 95.2 0.0095 3.3E-07 50.4 2.8 19 12-30 36-54 (229)
313 2vli_A Antibiotic resistance p 95.2 0.0084 2.9E-07 48.3 2.4 22 11-32 6-27 (183)
314 2i3b_A HCR-ntpase, human cance 95.2 0.01 3.4E-07 48.8 2.8 19 12-30 3-21 (189)
315 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0096 3.3E-07 51.1 2.8 19 12-30 31-49 (250)
316 2olj_A Amino acid ABC transpor 95.2 0.0095 3.3E-07 51.6 2.8 19 12-30 52-70 (263)
317 3lnc_A Guanylate kinase, GMP k 95.1 0.0066 2.2E-07 51.2 1.7 20 12-31 29-48 (231)
318 1c9k_A COBU, adenosylcobinamid 95.1 0.01 3.5E-07 48.3 2.7 18 13-30 2-19 (180)
319 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.01 3.5E-07 49.5 2.8 20 12-31 25-44 (235)
320 1e6c_A Shikimate kinase; phosp 95.1 0.011 3.6E-07 47.2 2.8 22 12-33 4-25 (173)
321 1lw7_A Transcriptional regulat 95.1 0.011 3.7E-07 53.7 3.2 26 10-35 170-195 (365)
322 2ghi_A Transport protein; mult 95.1 0.011 3.7E-07 51.2 3.0 19 12-30 48-66 (260)
323 2ixe_A Antigen peptide transpo 95.1 0.01 3.5E-07 51.6 2.8 19 12-30 47-65 (271)
324 1gvn_B Zeta; postsegregational 95.1 0.0099 3.4E-07 52.2 2.7 24 9-32 32-55 (287)
325 3umf_A Adenylate kinase; rossm 95.1 0.013 4.6E-07 49.1 3.4 25 10-34 28-53 (217)
326 2nq2_C Hypothetical ABC transp 95.1 0.01 3.5E-07 51.1 2.8 19 12-30 33-51 (253)
327 2yz2_A Putative ABC transporte 95.1 0.011 3.7E-07 51.3 2.8 19 12-30 35-53 (266)
328 1qf9_A UMP/CMP kinase, protein 95.0 0.014 4.8E-07 47.2 3.4 23 11-33 7-29 (194)
329 2yvu_A Probable adenylyl-sulfa 95.0 0.012 4.2E-07 47.6 3.0 23 9-31 12-34 (186)
330 2zu0_C Probable ATP-dependent 95.0 0.011 3.7E-07 51.3 2.8 19 12-30 48-66 (267)
331 2pjz_A Hypothetical protein ST 95.0 0.012 3.9E-07 51.1 2.9 19 12-30 32-50 (263)
332 2ze6_A Isopentenyl transferase 95.0 0.011 3.8E-07 50.8 2.8 20 12-31 3-22 (253)
333 2ihy_A ABC transporter, ATP-bi 95.0 0.012 3.9E-07 51.6 2.9 19 12-30 49-67 (279)
334 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.011 3.8E-07 50.9 2.8 22 11-32 5-26 (260)
335 2qt1_A Nicotinamide riboside k 95.0 0.013 4.4E-07 48.4 3.1 24 9-32 20-43 (207)
336 3aez_A Pantothenate kinase; tr 95.0 0.014 4.9E-07 51.8 3.5 27 9-35 89-115 (312)
337 1zuh_A Shikimate kinase; alpha 95.0 0.015 5.3E-07 46.1 3.4 24 12-35 9-32 (168)
338 2jeo_A Uridine-cytidine kinase 94.9 0.013 4.3E-07 50.0 2.8 25 10-34 25-49 (245)
339 2cvh_A DNA repair and recombin 94.9 0.013 4.4E-07 48.6 2.8 20 12-31 22-41 (220)
340 2pez_A Bifunctional 3'-phospho 94.9 0.014 4.8E-07 46.9 3.0 23 10-32 5-27 (179)
341 1rz3_A Hypothetical protein rb 94.8 0.014 4.9E-07 48.0 2.9 23 10-32 22-44 (201)
342 2grj_A Dephospho-COA kinase; T 94.8 0.017 5.7E-07 47.6 3.2 29 8-36 10-38 (192)
343 1gtv_A TMK, thymidylate kinase 94.8 0.0067 2.3E-07 50.2 0.7 21 12-32 2-22 (214)
344 2v9p_A Replication protein E1; 94.8 0.014 4.9E-07 51.6 2.9 23 12-34 128-150 (305)
345 1vht_A Dephospho-COA kinase; s 94.7 0.016 5.4E-07 48.3 3.0 23 10-32 4-26 (218)
346 1m7g_A Adenylylsulfate kinase; 94.7 0.015 5.2E-07 48.2 2.8 23 10-32 25-47 (211)
347 4e22_A Cytidylate kinase; P-lo 94.7 0.017 5.7E-07 49.6 3.1 20 11-30 28-47 (252)
348 1cr0_A DNA primase/helicase; R 94.6 0.015 5.2E-07 50.9 2.7 22 12-33 37-58 (296)
349 3fvq_A Fe(3+) IONS import ATP- 94.6 0.015 5.2E-07 52.6 2.7 20 12-31 32-51 (359)
350 2bbs_A Cystic fibrosis transme 94.6 0.016 5.6E-07 50.9 2.9 19 12-30 66-84 (290)
351 1n0w_A DNA repair protein RAD5 94.6 0.017 5.9E-07 48.6 2.8 21 12-32 26-46 (243)
352 3kta_A Chromosome segregation 94.5 0.022 7.6E-07 45.8 3.3 24 12-35 28-51 (182)
353 1uj2_A Uridine-cytidine kinase 94.5 0.023 7.7E-07 48.6 3.5 25 9-33 21-45 (252)
354 1odf_A YGR205W, hypothetical 3 94.5 0.022 7.6E-07 50.0 3.5 27 8-34 29-55 (290)
355 1z47_A CYSA, putative ABC-tran 94.5 0.017 5.9E-07 52.2 2.8 20 12-31 43-62 (355)
356 2f1r_A Molybdopterin-guanine d 94.5 0.013 4.5E-07 47.3 1.8 23 12-34 4-26 (171)
357 3nwj_A ATSK2; P loop, shikimat 94.5 0.019 6.5E-07 49.3 2.9 23 10-32 48-70 (250)
358 2f6r_A COA synthase, bifunctio 94.4 0.021 7.2E-07 49.9 3.1 24 9-32 74-97 (281)
359 2yyz_A Sugar ABC transporter, 94.4 0.019 6.4E-07 52.1 2.8 20 12-31 31-50 (359)
360 2qag_B Septin-6, protein NEDD5 94.4 0.018 6.2E-07 53.3 2.8 19 12-30 44-62 (427)
361 1np6_A Molybdopterin-guanine d 94.4 0.021 7.3E-07 46.2 2.8 19 12-30 8-26 (174)
362 3r20_A Cytidylate kinase; stru 94.4 0.022 7.5E-07 48.4 3.0 25 9-33 8-32 (233)
363 2it1_A 362AA long hypothetical 94.4 0.019 6.7E-07 52.0 2.8 20 12-31 31-50 (362)
364 3rlf_A Maltose/maltodextrin im 94.4 0.019 6.7E-07 52.3 2.8 20 12-31 31-50 (381)
365 3jvv_A Twitching mobility prot 94.3 0.02 6.8E-07 51.9 2.8 19 12-30 125-143 (356)
366 1nlf_A Regulatory protein REPA 94.3 0.02 6.8E-07 49.8 2.7 21 12-32 32-52 (279)
367 2kjq_A DNAA-related protein; s 94.3 0.02 6.9E-07 44.9 2.5 19 12-30 38-56 (149)
368 1g29_1 MALK, maltose transport 94.3 0.02 6.9E-07 52.1 2.8 20 12-31 31-50 (372)
369 1ltq_A Polynucleotide kinase; 94.3 0.021 7E-07 50.1 2.8 21 12-32 4-24 (301)
370 1v43_A Sugar-binding transport 94.3 0.02 7E-07 52.1 2.8 20 12-31 39-58 (372)
371 3tqc_A Pantothenate kinase; bi 94.3 0.028 9.5E-07 50.1 3.6 26 10-35 92-117 (321)
372 3nh6_A ATP-binding cassette SU 94.3 0.016 5.3E-07 51.4 2.0 20 12-31 82-101 (306)
373 1sq5_A Pantothenate kinase; P- 94.3 0.026 8.7E-07 50.0 3.4 26 10-35 80-105 (308)
374 1jbk_A CLPB protein; beta barr 94.3 0.023 7.8E-07 45.4 2.8 20 11-30 44-63 (195)
375 2x8a_A Nuclear valosin-contain 94.2 0.022 7.6E-07 49.5 2.8 19 13-31 47-65 (274)
376 2vp4_A Deoxynucleoside kinase; 94.2 0.016 5.4E-07 48.9 1.8 22 10-31 20-41 (230)
377 3tui_C Methionine import ATP-b 94.1 0.024 8.2E-07 51.4 2.8 22 12-33 56-77 (366)
378 1ixz_A ATP-dependent metallopr 94.1 0.025 8.5E-07 48.3 2.8 20 13-32 52-71 (254)
379 3d31_A Sulfate/molybdate ABC t 94.1 0.017 5.9E-07 52.1 1.8 20 12-31 28-47 (348)
380 2gza_A Type IV secretion syste 94.1 0.023 7.9E-07 51.5 2.7 22 10-31 175-196 (361)
381 1rj9_A FTSY, signal recognitio 94.0 0.034 1.2E-06 49.2 3.5 24 11-34 103-126 (304)
382 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.022 7.6E-07 51.0 2.3 20 11-30 172-191 (330)
383 2ewv_A Twitching motility prot 93.9 0.026 8.9E-07 51.4 2.8 20 12-31 138-157 (372)
384 1xjc_A MOBB protein homolog; s 93.9 0.03 1E-06 45.0 2.8 19 12-30 6-24 (169)
385 3b9q_A Chloroplast SRP recepto 93.9 0.028 9.5E-07 49.7 2.8 22 11-32 101-122 (302)
386 2npi_A Protein CLP1; CLP1-PCF1 93.9 0.026 9E-07 52.9 2.8 21 11-31 139-159 (460)
387 4eaq_A DTMP kinase, thymidylat 93.9 0.029 9.9E-07 47.4 2.8 26 9-34 25-50 (229)
388 3gd7_A Fusion complex of cysti 93.8 0.028 9.5E-07 51.5 2.7 20 12-31 49-68 (390)
389 2obl_A ESCN; ATPase, hydrolase 93.8 0.029 1E-06 50.6 2.8 23 11-33 72-94 (347)
390 1p5z_B DCK, deoxycytidine kina 93.8 0.019 6.4E-07 49.4 1.5 24 8-31 22-45 (263)
391 1p9r_A General secretion pathw 93.8 0.03 1E-06 51.9 2.8 19 12-30 169-187 (418)
392 3bos_A Putative DNA replicatio 93.7 0.032 1.1E-06 46.6 2.8 21 10-30 52-72 (242)
393 2dr3_A UPF0273 protein PH0284; 93.7 0.031 1.1E-06 47.0 2.7 19 12-30 25-43 (247)
394 1oxx_K GLCV, glucose, ABC tran 93.7 0.018 6.1E-07 52.1 1.2 20 12-31 33-52 (353)
395 1pzn_A RAD51, DNA repair and r 93.7 0.031 1.1E-06 50.4 2.7 23 12-34 133-155 (349)
396 1nij_A Hypothetical protein YJ 93.6 0.03 1E-06 49.8 2.5 20 12-31 6-25 (318)
397 1iy2_A ATP-dependent metallopr 93.6 0.035 1.2E-06 48.1 2.8 20 13-32 76-95 (278)
398 3zvl_A Bifunctional polynucleo 93.5 0.034 1.2E-06 51.4 2.8 22 10-31 258-279 (416)
399 1q3t_A Cytidylate kinase; nucl 93.5 0.04 1.4E-06 46.5 3.0 24 9-32 15-38 (236)
400 3gmt_A Adenylate kinase; ssgci 93.5 0.051 1.7E-06 46.0 3.6 29 7-35 5-33 (230)
401 2yv5_A YJEQ protein; hydrolase 93.5 0.037 1.3E-06 48.9 2.8 21 11-31 166-186 (302)
402 1tf7_A KAIC; homohexamer, hexa 93.5 0.034 1.2E-06 53.0 2.7 19 12-30 41-59 (525)
403 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.051 1.7E-06 42.6 3.3 21 13-33 26-46 (149)
404 3e70_C DPA, signal recognition 93.4 0.037 1.3E-06 49.5 2.8 24 9-32 128-151 (328)
405 3ake_A Cytidylate kinase; CMP 93.4 0.051 1.8E-06 44.4 3.5 24 12-35 4-27 (208)
406 2p65_A Hypothetical protein PF 93.4 0.03 1E-06 44.7 2.0 22 10-31 43-64 (187)
407 1u0l_A Probable GTPase ENGC; p 93.4 0.039 1.3E-06 48.6 2.8 19 12-30 171-189 (301)
408 2yhs_A FTSY, cell division pro 93.3 0.039 1.3E-06 52.0 2.8 22 11-32 294-315 (503)
409 1lv7_A FTSH; alpha/beta domain 93.3 0.041 1.4E-06 46.9 2.8 21 11-31 46-66 (257)
410 2dpy_A FLII, flagellum-specifi 93.2 0.041 1.4E-06 51.2 2.8 23 11-33 158-180 (438)
411 2oap_1 GSPE-2, type II secreti 93.1 0.041 1.4E-06 52.3 2.7 21 10-30 260-280 (511)
412 2og2_A Putative signal recogni 93.1 0.043 1.5E-06 49.7 2.8 22 11-32 158-179 (359)
413 2w58_A DNAI, primosome compone 93.1 0.047 1.6E-06 44.6 2.8 20 11-30 55-74 (202)
414 3cnl_A YLQF, putative uncharac 93.1 0.047 1.6E-06 47.1 2.9 21 11-31 100-120 (262)
415 1in4_A RUVB, holliday junction 93.1 0.046 1.6E-06 48.8 2.8 21 11-31 52-72 (334)
416 2rcn_A Probable GTPase ENGC; Y 93.0 0.046 1.6E-06 49.4 2.8 19 12-30 217-235 (358)
417 1njg_A DNA polymerase III subu 92.9 0.053 1.8E-06 44.9 2.8 20 12-31 47-66 (250)
418 2chg_A Replication factor C sm 92.9 0.054 1.8E-06 44.3 2.8 20 12-31 40-59 (226)
419 1a7j_A Phosphoribulokinase; tr 92.7 0.046 1.6E-06 47.9 2.3 24 10-33 5-28 (290)
420 3lda_A DNA repair protein RAD5 92.7 0.052 1.8E-06 49.9 2.7 20 12-31 180-199 (400)
421 3n70_A Transport activator; si 92.7 0.066 2.3E-06 41.5 3.0 23 8-30 22-44 (145)
422 1tq4_A IIGP1, interferon-induc 92.7 0.056 1.9E-06 49.9 2.9 21 10-30 69-89 (413)
423 1yqt_A RNAse L inhibitor; ATP- 92.6 0.057 1.9E-06 51.7 2.9 20 12-31 49-68 (538)
424 1puj_A YLQF, conserved hypothe 92.6 0.062 2.1E-06 46.9 2.9 22 9-30 119-140 (282)
425 1svm_A Large T antigen; AAA+ f 92.6 0.059 2E-06 49.1 2.8 21 11-31 170-190 (377)
426 2ocp_A DGK, deoxyguanosine kin 92.5 0.069 2.4E-06 45.1 3.1 22 11-32 3-24 (241)
427 2px0_A Flagellar biosynthesis 92.4 0.063 2.2E-06 47.2 2.7 24 10-33 105-128 (296)
428 2h92_A Cytidylate kinase; ross 92.3 0.085 2.9E-06 43.7 3.4 25 11-35 4-28 (219)
429 3h4m_A Proteasome-activating n 92.3 0.066 2.3E-06 46.3 2.8 22 10-31 51-72 (285)
430 3b9p_A CG5977-PA, isoform A; A 92.3 0.067 2.3E-06 46.6 2.8 22 10-31 54-75 (297)
431 3qks_A DNA double-strand break 92.3 0.093 3.2E-06 43.3 3.5 23 13-35 26-48 (203)
432 3euj_A Chromosome partition pr 92.2 0.067 2.3E-06 50.3 2.8 23 12-34 31-53 (483)
433 1t9h_A YLOQ, probable GTPase E 92.2 0.031 1.1E-06 49.5 0.5 20 11-30 174-193 (307)
434 2axn_A 6-phosphofructo-2-kinas 92.1 0.068 2.3E-06 50.9 2.8 22 10-31 35-56 (520)
435 3b60_A Lipid A export ATP-bind 92.1 0.069 2.4E-06 51.6 2.8 20 12-31 371-390 (582)
436 2qz4_A Paraplegin; AAA+, SPG7, 92.1 0.076 2.6E-06 45.1 2.8 21 11-31 40-60 (262)
437 3ozx_A RNAse L inhibitor; ATP 92.0 0.072 2.5E-06 50.9 2.8 19 12-30 27-45 (538)
438 1l8q_A Chromosomal replication 92.0 0.075 2.6E-06 47.0 2.8 21 11-31 38-58 (324)
439 1vma_A Cell division protein F 92.0 0.077 2.6E-06 46.9 2.8 22 12-33 106-127 (306)
440 1ewq_A DNA mismatch repair pro 92.0 0.07 2.4E-06 53.2 2.8 20 12-31 578-597 (765)
441 3cf0_A Transitional endoplasmi 91.9 0.077 2.6E-06 46.6 2.8 22 11-32 50-71 (301)
442 3b5x_A Lipid A export ATP-bind 91.9 0.073 2.5E-06 51.4 2.8 23 12-34 371-393 (582)
443 1wb9_A DNA mismatch repair pro 91.8 0.074 2.5E-06 53.3 2.8 20 12-31 609-628 (800)
444 2yl4_A ATP-binding cassette SU 91.8 0.074 2.5E-06 51.5 2.7 20 12-31 372-391 (595)
445 3d3q_A TRNA delta(2)-isopenten 91.8 0.085 2.9E-06 47.3 2.8 22 12-33 9-30 (340)
446 3hr8_A Protein RECA; alpha and 91.8 0.082 2.8E-06 47.8 2.7 20 13-32 64-83 (356)
447 3j16_B RLI1P; ribosome recycli 91.7 0.08 2.7E-06 51.4 2.8 20 12-31 105-124 (608)
448 3bk7_A ABC transporter ATP-bin 91.7 0.084 2.9E-06 51.3 2.9 19 12-30 119-137 (607)
449 3crm_A TRNA delta(2)-isopenten 91.6 0.091 3.1E-06 46.8 2.8 21 12-32 7-27 (323)
450 3qf4_B Uncharacterized ABC tra 91.5 0.086 2.9E-06 51.1 2.8 20 12-31 383-402 (598)
451 2ga8_A Hypothetical 39.9 kDa p 91.4 0.1 3.5E-06 47.1 2.9 20 11-30 25-44 (359)
452 3bk7_A ABC transporter ATP-bin 91.4 0.09 3.1E-06 51.0 2.8 20 12-31 384-403 (607)
453 3v9p_A DTMP kinase, thymidylat 91.3 0.098 3.4E-06 44.1 2.6 23 9-31 24-46 (227)
454 3thx_A DNA mismatch repair pro 91.3 0.092 3.2E-06 53.5 2.8 19 12-30 664-682 (934)
455 3ozx_A RNAse L inhibitor; ATP 91.2 0.097 3.3E-06 50.0 2.8 19 12-30 296-314 (538)
456 1yqt_A RNAse L inhibitor; ATP- 91.2 0.1 3.5E-06 49.9 2.9 19 12-30 314-332 (538)
457 2o8b_B DNA mismatch repair pro 91.2 0.11 3.7E-06 53.5 3.3 22 12-33 791-812 (1022)
458 2qmh_A HPR kinase/phosphorylas 91.2 0.11 3.8E-06 42.9 2.7 20 11-30 35-54 (205)
459 4edh_A DTMP kinase, thymidylat 91.2 0.12 4.1E-06 43.1 3.0 23 10-32 6-28 (213)
460 3cr8_A Sulfate adenylyltranfer 91.2 0.085 2.9E-06 50.6 2.3 23 10-32 369-391 (552)
461 3szr_A Interferon-induced GTP- 91.1 0.073 2.5E-06 51.7 1.9 19 12-30 47-65 (608)
462 1tf7_A KAIC; homohexamer, hexa 91.1 0.098 3.4E-06 49.8 2.7 21 12-32 283-303 (525)
463 1sxj_E Activator 1 40 kDa subu 91.1 0.089 3.1E-06 46.9 2.3 20 13-32 39-58 (354)
464 3qf7_A RAD50; ABC-ATPase, ATPa 91.1 0.11 3.6E-06 47.2 2.8 25 13-37 26-51 (365)
465 2orw_A Thymidine kinase; TMTK, 91.1 0.11 3.9E-06 42.1 2.7 18 13-30 6-23 (184)
466 2zr9_A Protein RECA, recombina 91.0 0.11 3.7E-06 46.8 2.7 20 12-31 63-82 (349)
467 4fcw_A Chaperone protein CLPB; 90.9 0.11 3.8E-06 45.3 2.8 21 11-31 48-68 (311)
468 2qby_A CDC6 homolog 1, cell di 90.9 0.11 3.7E-06 46.6 2.7 22 10-31 45-66 (386)
469 1d2n_A N-ethylmaleimide-sensit 90.9 0.12 4.1E-06 44.4 2.8 23 9-31 63-85 (272)
470 4a82_A Cystic fibrosis transme 90.9 0.087 3E-06 50.8 2.1 19 12-30 369-387 (578)
471 3syl_A Protein CBBX; photosynt 90.8 0.11 3.9E-06 45.3 2.7 20 11-30 68-87 (309)
472 3j16_B RLI1P; ribosome recycli 90.8 0.11 3.8E-06 50.4 2.8 18 13-30 381-398 (608)
473 3thx_B DNA mismatch repair pro 90.8 0.081 2.8E-06 53.7 1.9 20 12-31 675-694 (918)
474 1ofh_A ATP-dependent HSL prote 90.8 0.12 4.2E-06 44.9 2.8 23 10-32 50-72 (310)
475 3lv8_A DTMP kinase, thymidylat 90.6 0.14 4.8E-06 43.4 2.9 22 10-31 27-48 (236)
476 3co5_A Putative two-component 90.6 0.078 2.7E-06 41.0 1.2 22 9-30 26-47 (143)
477 1fnn_A CDC6P, cell division co 90.5 0.13 4.4E-06 46.3 2.8 20 12-31 46-65 (389)
478 2r8r_A Sensor protein; KDPD, P 90.5 0.15 5.2E-06 42.9 3.0 23 8-30 4-26 (228)
479 1xwi_A SKD1 protein; VPS4B, AA 90.5 0.13 4.5E-06 45.6 2.8 21 11-31 46-66 (322)
480 3qf4_A ABC transporter, ATP-bi 90.4 0.12 4E-06 50.0 2.6 19 12-30 371-389 (587)
481 3a8t_A Adenylate isopentenyltr 90.3 0.14 4.9E-06 45.8 2.8 20 12-31 42-61 (339)
482 2iw3_A Elongation factor 3A; a 90.3 0.14 4.6E-06 52.4 3.0 20 12-31 463-482 (986)
483 3tqf_A HPR(Ser) kinase; transf 90.2 0.16 5.3E-06 41.0 2.7 20 11-30 17-36 (181)
484 3t15_A Ribulose bisphosphate c 90.2 0.15 5.2E-06 44.5 2.9 23 10-32 36-58 (293)
485 2r62_A Cell division protease 90.1 0.08 2.7E-06 45.3 1.0 20 12-31 46-65 (268)
486 3tmk_A Thymidylate kinase; pho 90.1 0.16 5.5E-06 42.4 2.8 25 10-34 5-29 (216)
487 2vhj_A Ntpase P4, P4; non- hyd 90.1 0.15 5.3E-06 45.3 2.8 19 13-31 126-144 (331)
488 1sxj_C Activator 1 40 kDa subu 90.1 0.15 5E-06 45.5 2.8 19 13-31 49-67 (340)
489 3eie_A Vacuolar protein sortin 90.0 0.15 5.1E-06 45.1 2.8 22 11-32 52-73 (322)
490 4ag6_A VIRB4 ATPase, type IV s 90.0 0.15 5.1E-06 46.4 2.8 22 10-31 35-56 (392)
491 3ld9_A DTMP kinase, thymidylat 90.0 0.18 6E-06 42.4 3.0 23 9-31 20-42 (223)
492 2zts_A Putative uncharacterize 89.9 0.16 5.6E-06 42.5 2.8 19 12-30 32-50 (251)
493 4tmk_A Protein (thymidylate ki 89.9 0.17 5.9E-06 42.1 2.9 21 11-31 4-24 (213)
494 3pfi_A Holliday junction ATP-d 89.9 0.18 6.2E-06 44.6 3.2 22 11-32 56-77 (338)
495 2v1u_A Cell division control p 89.9 0.14 4.8E-06 45.9 2.5 22 10-31 44-65 (387)
496 1zu4_A FTSY; GTPase, signal re 89.8 0.16 5.6E-06 45.1 2.8 21 12-32 107-127 (320)
497 1v5w_A DMC1, meiotic recombina 89.8 0.16 5.5E-06 45.5 2.8 21 12-32 124-144 (343)
498 2qen_A Walker-type ATPase; unk 89.8 0.16 5.6E-06 44.8 2.8 20 12-31 33-52 (350)
499 3exa_A TRNA delta(2)-isopenten 89.7 0.17 5.9E-06 44.8 2.8 20 12-31 5-24 (322)
500 4hlc_A DTMP kinase, thymidylat 89.6 0.27 9.2E-06 40.6 3.8 20 13-32 5-24 (205)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=5.1e-77 Score=539.05 Aligned_cols=303 Identities=53% Similarity=0.875 Sum_probs=283.0
Q ss_pred hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHH
Q psy8318 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQF 84 (313)
Q Consensus 5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i 84 (313)
++.++++|+||||+|+||||||+||||++|+.||+++|+..|++.||.|++++|+.|+++|+.+++++++|+++..++.+
T Consensus 2 ~~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~~~~~~~~~~~~ 81 (327)
T 3ohm_A 2 ADARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLV 81 (327)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSTHHHHHHHHH
T ss_pred chhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEE
Q psy8318 85 FTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIET 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~ 164 (313)
+....... .++++++++.|+.||+||+||+||.|+++|+++|++.|||++++||+.++|.||.+|+++++.||+|+.+.
T Consensus 82 ~~~~~~~~-~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~ 160 (327)
T 3ohm_A 82 REVDVEKV-SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEY 160 (327)
T ss_dssp HTCCGGGC-CCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCCCSEEEE
T ss_pred hccccccc-ccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCceeeEEEE
Confidence 87644332 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF 244 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv 244 (313)
.++++++++++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.+++.++..+|+++++++++.++|++||
T Consensus 161 ~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~ 240 (327)
T 3ohm_A 161 PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 240 (327)
T ss_dssp EEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred EEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccccccCCcccccCcCCC-----------------------CCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 245 LNKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 245 ~NK~Dl~~~k~~~~~l~~~f~~~~-----------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+||+|++.+++...++..+||+|+ ..+++++|+|||+++.||+.+|..+.+.|++++
T Consensus 241 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 241 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp EECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred EECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 999999999998899999999996 235789999999999999999999999999999
Q ss_pred hhhcCCc
Q psy8318 302 LKDCGIR 308 (313)
Q Consensus 302 ~~~~~~~ 308 (313)
+++.|+.
T Consensus 321 l~~~~l~ 327 (327)
T 3ohm_A 321 LKEYNLV 327 (327)
T ss_dssp CC-----
T ss_pred HHhcCCC
Confidence 9998863
No 2
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=3.3e-74 Score=522.30 Aligned_cols=297 Identities=38% Similarity=0.644 Sum_probs=277.1
Q ss_pred hhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHh
Q psy8318 7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFT 86 (313)
Q Consensus 7 ~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~ 86 (313)
.++++|+||||+|+||||||+||||++|+.||+++|+..|++.||.|++++|+.|+++|+.+++++++++++..+ +.
T Consensus 2 ~~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~~~~~~~~~---~~ 78 (340)
T 4fid_A 2 NAKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMKYQPKSKEF---TT 78 (340)
T ss_dssp --CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCSGGG---SC
T ss_pred CCCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCChhhHHHH---hh
Confidence 367999999999999999999999999999999999999999999999999999999999999999999987655 22
Q ss_pred hhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEEEE
Q psy8318 87 LASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHF 166 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~~~ 166 (313)
.. ....++++++++.|+.||+||+||+||.|+++|+++|++.|||++++|++.++|.||.+|+++++.||+|+.+..+
T Consensus 79 ~~--~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~ 156 (340)
T 4fid_A 79 ED--PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDF 156 (340)
T ss_dssp CS--CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEE
T ss_pred cc--cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceeeeEEEEE
Confidence 22 3346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy8318 167 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLN 246 (313)
Q Consensus 167 ~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~N 246 (313)
+++++++++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.+++.++..+|+++++++++.++|++||+|
T Consensus 157 ~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 157 VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCCcccccCcCCCC----------------------------C-----------CCeEEEEeecccCcCHH
Q psy8318 247 KNDLFQEKITKSPLTVCFPEYTD----------------------------Q-----------KEIYTHFTCATDTSNIQ 287 (313)
Q Consensus 247 K~Dl~~~k~~~~~l~~~f~~~~~----------------------------~-----------~~~~~~~tSA~~~~~v~ 287 (313)
|+|++.+++...++.++||+|.. . +.+++|+|||+++.||+
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 99999988988999999999852 0 46899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCcc
Q psy8318 288 FVFDAVTDVIIKANLKDCGIRE 309 (313)
Q Consensus 288 ~~f~~i~~~i~~~~~~~~~~~~ 309 (313)
.+|..+.+.|++ ++++.|+..
T Consensus 317 ~vF~~v~~~Il~-~l~~~~~~~ 337 (340)
T 4fid_A 317 RVFMLAVDVIMK-NMAANGKMR 337 (340)
T ss_dssp HHHHHHHHHHHH-HHHHTTCCC
T ss_pred HHHHHHHHHHHH-HHHHcCCCC
Confidence 999999999999 999999864
No 3
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=3.1e-73 Score=521.48 Aligned_cols=304 Identities=83% Similarity=1.281 Sum_probs=279.6
Q ss_pred hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHH
Q psy8318 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQF 84 (313)
Q Consensus 5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i 84 (313)
++.++++|+||||+|+||||||+||||++|++||+++|+..|+++||.|++++|+.|+++|+.+++++.+++++..++.+
T Consensus 27 ~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 106 (353)
T 1cip_A 27 EKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQL 106 (353)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCSSTTHHHHHHHH
T ss_pred HhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEE
Q psy8318 85 FTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIET 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~ 164 (313)
+.+....+...+++++++.++.||+||+||+||.|+++|+++|++.|||++++||+.++|.||.+|+++++.||+|+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~~~Y~PT~~Dil~~~~~T~Gi~~~ 186 (353)
T 1cip_A 107 FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVET 186 (353)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHTCCCCCCSEEEE
T ss_pred HhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhcCCCCCCccccccccCceeceEEE
Confidence 87755444467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF 244 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv 244 (313)
.++++++.+++||||||+++|++|.+||+++++||||+|+++||+++.||++.+++.++..+|+++++++++.++|++||
T Consensus 187 ~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv 266 (353)
T 1cip_A 187 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 266 (353)
T ss_dssp EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEE
T ss_pred EEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred eecCCcccccccCCcccccCcCCCC-----------------------CCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 245 LNKNDLFQEKITKSPLTVCFPEYTD-----------------------QKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 245 ~NK~Dl~~~k~~~~~l~~~f~~~~~-----------------------~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+||+|++.+++...++..+||+|.. .+++++|+|||++|+||.++|+++.+.+++.+
T Consensus 267 ~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 267 LNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp EECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred EECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 9999999888888889999998851 36789999999999999999999999999999
Q ss_pred hhhcCCc
Q psy8318 302 LKDCGIR 308 (313)
Q Consensus 302 ~~~~~~~ 308 (313)
+++.||+
T Consensus 347 l~~~~l~ 353 (353)
T 1cip_A 347 LKDCGLF 353 (353)
T ss_dssp -------
T ss_pred HHHcCCC
Confidence 9998873
No 4
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=4.6e-71 Score=512.19 Aligned_cols=304 Identities=44% Similarity=0.769 Sum_probs=276.4
Q ss_pred hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChH---------------HHhhhHHHHHHHHHHHHHHHHHHHHHcC
Q psy8318 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKE---------------ECEQYRPVVYSNSIQSLMAIIRAMGQLK 69 (313)
Q Consensus 5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~---------------e~~~~~~~I~~N~~~~~~~li~~~~~~~ 69 (313)
++.++++|+||||+|+||||||+||||++|+.||+++ |+..|++.|+.|++++|+.|+++|+.++
T Consensus 35 ~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~ 114 (402)
T 1azs_C 35 QVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLV 114 (402)
T ss_dssp -CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------------CTTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999999999975 6778999999999999999999999997
Q ss_pred --CCcCCCCCHhHHHHHHhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccc
Q psy8318 70 --IDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPT 147 (313)
Q Consensus 70 --i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt 147 (313)
+++.+++++..++.++......+ ..+++++++.|+.||+||+||+||.|+++|+++|++.|||++++||+.++|.||
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT 193 (402)
T 1azs_C 115 PPVELANPENQFRVDYILSVMNVPD-FDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPS 193 (402)
T ss_dssp SCCCCSSGGGHHHHHHHHHTTTCSS-CCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCC
T ss_pred CCcccCCchhHHHHHHHHhhcccCC-CCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCc
Confidence 78889998888888877654332 579999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 148 QQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 148 ~~dil~~~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
.+|+++++.+|+|+.+..+.++++.+++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.+++.++..||
T Consensus 194 ~~Dil~~r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~ 273 (402)
T 1azs_C 194 DQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 273 (402)
T ss_dssp HHHHHHCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHH
T ss_pred cccccccccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCcEEEEeecCCccccccc--CCcccccCcCCCC------------------------------------
Q psy8318 228 DSICNSKWFMDTSIILFLNKNDLFQEKIT--KSPLTVCFPEYTD------------------------------------ 269 (313)
Q Consensus 228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~--~~~l~~~f~~~~~------------------------------------ 269 (313)
+.+++++++.++|++||+||+|++.+++. ..++.++||+|..
T Consensus 274 ~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~ 353 (402)
T 1azs_C 274 KSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASG 353 (402)
T ss_dssp HHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccc
Confidence 99999888889999999999999987774 5578889988831
Q ss_pred --CCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhhcCCcc
Q psy8318 270 --QKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIRE 309 (313)
Q Consensus 270 --~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~~~~~~ 309 (313)
.+.+++|+|||++++||+++|.++.+.|++.++++.||+-
T Consensus 354 ~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l~~~~~~~ 395 (402)
T 1azs_C 354 DGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELLG 395 (402)
T ss_dssp TTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1368899999999999999999999999999999998874
No 5
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=2e-70 Score=504.38 Aligned_cols=301 Identities=44% Similarity=0.784 Sum_probs=269.9
Q ss_pred hhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHH
Q psy8318 6 WQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFF 85 (313)
Q Consensus 6 ~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~ 85 (313)
+.++.+||||||++|||||||+||||++|.+||++.|+..|+..|+.|++++|+.|+++|+.+++++.+++++..+..++
T Consensus 29 ~~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~~n~~~s~~~il~a~~~~~i~~~~~~~~~~~~~~~ 108 (362)
T 1zcb_A 29 RSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLM 108 (362)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSGGGHHHHHHHH
T ss_pred HhcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred hhhccc--------CCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeee
Q psy8318 86 TLASAA--------EEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVK 157 (313)
Q Consensus 86 ~~~~~~--------~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~ 157 (313)
...... +...+ +++++.|+.||+||+||+||.|+++|+++|++.|||++++||+.++|.||.+|+++++.|
T Consensus 109 ~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~ 187 (362)
T 1zcb_A 109 AFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRP 187 (362)
T ss_dssp TSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCC
T ss_pred hhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHHHHHHHhcCCCCCChhhhhhccCC
Confidence 664321 11346 899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~ 237 (313)
|+|+.+..++++++.+++||||||+.+|++|.+||++++++|||+|+++|||++.||++.+++.++..+|+.+++++++.
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred CCcEEEEeecCCcccccccCCcccccCcCCCC------------------------CCCeEEEEeecccCcCHHHHHHHH
Q psy8318 238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTD------------------------QKEIYTHFTCATDTSNIQFVFDAV 293 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~------------------------~~~~~~~~tSA~~~~~v~~~f~~i 293 (313)
++|++||+||+|++.+++...++..+||+|.. .+++++|+|||++|+||.++|.++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 99999999999999888888889999988851 346899999999999999999999
Q ss_pred HHHHHHhhhhhcCCc
Q psy8318 294 TDVIIKANLKDCGIR 308 (313)
Q Consensus 294 ~~~i~~~~~~~~~~~ 308 (313)
.+.+++.++++ |++
T Consensus 348 ~~~i~~~~l~~-~l~ 361 (362)
T 1zcb_A 348 KDTILHDNLKQ-LML 361 (362)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHh-hcc
Confidence 99999999998 875
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-68 Score=490.62 Aligned_cols=302 Identities=39% Similarity=0.660 Sum_probs=267.3
Q ss_pred hhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcC-------CCCCHh
Q psy8318 7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFG-------DHKNAD 79 (313)
Q Consensus 7 ~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~-------~~~~~~ 79 (313)
-.+++||||||++|||||||+||||++|.+||+++|+..|+..|+.|++++|+.|+++|+.++++.. +++++.
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~ 85 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIA 85 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHH
Confidence 3568899999999999999999999999999999999999999999999999999999999887665 344455
Q ss_pred HHHHHHhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeec
Q psy8318 80 CARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTT 159 (313)
Q Consensus 80 ~~~~i~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~ 159 (313)
.+..+.......+...+++++++.|+.||+||+||+||.|+++++++|++.|||++++||+.++|.||.+|+++++.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~ 165 (354)
T 2xtz_A 86 IGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTT 165 (354)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCC
T ss_pred HHHHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeeccccc
Confidence 55555555434445679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEe------cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 160 GIIETHFTF------KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 160 g~~~~~~~~------~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
|+.+..|.+ +.+++++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.++++++..+|++++++
T Consensus 166 Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~ 245 (354)
T 2xtz_A 166 GVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 245 (354)
T ss_dssp SEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC
T ss_pred ceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc
Confidence 999999888 45899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcEEEEeecCCcccccccCCccccc--CcCCC-----------------C---------------CCCeEEEEee
Q psy8318 234 KWFMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYT-----------------D---------------QKEIYTHFTC 279 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~--f~~~~-----------------~---------------~~~~~~~~tS 279 (313)
+.+.++|++||+||+|++.+++...++..+ ||+|. . .+.+++|+||
T Consensus 246 ~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTS 325 (354)
T 2xtz_A 246 PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTT 325 (354)
T ss_dssp GGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECC
T ss_pred cccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEE
Confidence 888899999999999998877655554433 77762 0 2457789999
Q ss_pred cccCcCHHHHHHHHHHHHHHhhhhhcCCc
Q psy8318 280 ATDTSNIQFVFDAVTDVIIKANLKDCGIR 308 (313)
Q Consensus 280 A~~~~~v~~~f~~i~~~i~~~~~~~~~~~ 308 (313)
|++|+||+++|+++.+.|++.++++.||+
T Consensus 326 A~d~~nV~~vF~~v~~~I~~~~l~~~~l~ 354 (354)
T 2xtz_A 326 ALDQKLVKKTFKLVDETLRRRNLLEAGLL 354 (354)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred eecchhHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999998873
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.94 E-value=2e-27 Score=203.84 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=93.4
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+++++|||+||+.++.+|..||++++++|+|+|+++ ..+++....|+..+... ...++|++|||||+|
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~----------~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~D 129 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN----------VNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTT
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecch----------hHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccc
Confidence 4789999999999999999999999999999999999 88898888888887653 235789999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+..++....+....|. ...++.+++|||++|.||.++|++|++.+...
T Consensus 130 l~~~r~V~~~e~~~~a---~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 130 LADKRQVSIEEGERKA---KELNVMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp CGGGCCSCHHHHHHHH---HHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred hHhcCcccHHHHhhHH---HHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 8765432222222222 22467899999999999999999999988643
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.93 E-value=5.1e-25 Score=180.47 Aligned_cols=132 Identities=21% Similarity=0.356 Sum_probs=107.5
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 105 (171)
T 1upt_A 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAMLEEEE 105 (171)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHHTCGG
T ss_pred CCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 466787777888889999999999999999999999999999999999998 6788989999998887655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
..+.|+++|+||+|+..+. ...++...+ ... ...++.++++||++|.|+.++|+++.+.+.+
T Consensus 106 ~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 106 LRKAILVVFANKQDMEQAM-TSSEMANSLGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp GTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGC-TTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hCCCEEEEEEECCCCcCCC-CHHHHHHHhCchhc-cCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 5789999999999987641 111222211 112 3457789999999999999999999988753
No 9
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=2.7e-25 Score=181.03 Aligned_cols=132 Identities=23% Similarity=0.412 Sum_probs=105.3
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+..++..+.+||++|++.++..|..++++++++++|+|+++ ..++.+...++..+.....
T Consensus 29 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 98 (164)
T 1r8s_A 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDE 98 (164)
T ss_dssp CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred cCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 356676667777888999999999999999999999999999999999998 7888988899998887666
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
..+.|++||+||+|+..+ ....++...+. .. ...++.+++|||++|.||.++|+++.+.+.+
T Consensus 99 ~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 99 LRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp GTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGC-SSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred hcCCeEEEEEECcCCcCC-CCHHHHHHHhCcccc-cCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 678999999999998653 11122222211 11 3356789999999999999999999987754
No 10
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.93 E-value=2.4e-25 Score=185.27 Aligned_cols=134 Identities=17% Similarity=0.254 Sum_probs=107.1
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
+.||+|+....+.+++..+.+||++|++.++..|..++++++++++|+|+++ ..++.+...++..++...
T Consensus 44 ~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~ 113 (181)
T 1fzq_A 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEE 113 (181)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCG
T ss_pred ccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhCh
Confidence 3578888877888889999999999999999999999999999999999998 788998888988887765
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
...+.|+++++||+|+..+. ...++.+.+.. .....++.+++|||++|.||.++|+|+.+.+.+
T Consensus 114 ~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 114 KLSCVPVLIFANKQDLLTAA-PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp GGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred hhcCCCEEEEEECcCcccCC-CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 55789999999999987642 11222222110 003356789999999999999999999987754
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=2.3e-25 Score=188.27 Aligned_cols=129 Identities=20% Similarity=0.340 Sum_probs=99.1
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
||+|.....+.+++..+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..+......
T Consensus 55 ~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~ 124 (198)
T 1f6b_A 55 PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDETI 124 (198)
T ss_dssp CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGG
T ss_pred CCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCccc
Confidence 45555556777788999999999999999999999999999999999998 78899999999998876555
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCC-------------CCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-------------DQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
.++|+++|+||+|+..+ +...++.+.+.... ..+.+.+++|||++|+||.++|+||.+.
T Consensus 125 ~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 125 ANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCcccc-CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999998752 33333333222110 1246789999999999999999999764
No 12
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=5.9e-25 Score=184.42 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=104.8
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|.....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..+.....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 121 (190)
T 1m2o_B 52 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAE 121 (190)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHcchh
Confidence 355566666778888999999999999999999999999999999999998 7889999999999877655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCC--------CCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEY--------TDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~--------~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
..+.|+++++||+|+..+ ....++.+.+... .....+.+++|||++|.||.++|++|.+.
T Consensus 122 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp GTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred hcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 568999999999998762 3333333333221 12356789999999999999999999764
No 13
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=9.5e-25 Score=182.44 Aligned_cols=135 Identities=17% Similarity=0.293 Sum_probs=109.2
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 120 (189)
T 2x77_A 51 VPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD----------RDRMGVAKHELYALLDEDE 120 (189)
T ss_dssp CSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC----------CTTHHHHHHHHHHHHTCST
T ss_pred CCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhhhh
Confidence 467787777788889999999999999999999999999999999999998 7789999999999887666
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCc-CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP-EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~-~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
..+.|+++|+||+|+..+. ...++.+.+. .+...+++.+++|||++|.||.++|+++.+.+.++.
T Consensus 121 ~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 121 LRKSLLLIFANKQDLPDAA-SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp TTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred cCCCeEEEEEECCCCcCCC-CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence 6789999999999987541 1112222211 011345678999999999999999999999886553
No 14
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=8.4e-25 Score=182.56 Aligned_cols=131 Identities=16% Similarity=0.267 Sum_probs=103.1
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.....
T Consensus 45 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 114 (187)
T 1zj6_A 45 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHED 114 (187)
T ss_dssp ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSGG
T ss_pred cCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhchh
Confidence 567777777788889999999999999999999999999999999999998 7789999999999887654
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..+.|+++|+||+|+..+ ....++.+.+. .+ ...++.+++|||++|.||.++|++|.+.+.
T Consensus 115 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 115 LRKAGLLIFANKQDVKEC-MTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp GTTCEEEEEEECTTSTTC-CCHHHHHHHHTGGGC-CSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hCCCeEEEEEECCCCcCC-CCHHHHHHHhChhhh-cCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 568999999999998753 22222222221 12 345678999999999999999999998764
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=5.5e-25 Score=185.01 Aligned_cols=135 Identities=18% Similarity=0.255 Sum_probs=107.3
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....++..++.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 48 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 117 (199)
T 4bas_A 48 TATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD----------HLRLCVVKSEIQAMLKHED 117 (199)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTSHH
T ss_pred ccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCc----------HHHHHHHHHHHHHHHhChh
Confidence 456777777778889999999999999999999999999999999999998 7889999899988876532
Q ss_pred C-------CCCcEEEEeecCCcccccccCCcccccCcC--CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 236 F-------MDTSIILFLNKNDLFQEKITKSPLTVCFPE--YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 236 ~-------~~~piilv~NK~Dl~~~k~~~~~l~~~f~~--~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
. .+.|++||+||+|+..+. ...++.+.+.. +....++.+++|||++|.||.++|++|.+.+.+..
T Consensus 118 ~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 118 IRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred hhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 2 278999999999987642 11222222110 00235678999999999999999999999987653
No 16
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=8.4e-25 Score=183.01 Aligned_cols=131 Identities=26% Similarity=0.333 Sum_probs=106.4
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.+|+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 121 (190)
T 2h57_A 52 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD----------RLRMVVAKEELDTLLNHPD 121 (190)
T ss_dssp CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHSTT
T ss_pred CCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChh
Confidence 466677777888888999999999999999999999999999999999998 7788888899998887655
Q ss_pred C--CCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 236 F--MDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 236 ~--~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
. .+.|++||+||+|+..+ ....++.+.+ ..+ ...++.++++||++|.||.++|++|.+.+.
T Consensus 122 ~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 122 IKHRRIPILFFANKMDLRDA-VTSVKVSQLLCLENI-KDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTSCCCEEEEEECTTSTTC-CCHHHHHHHHTGGGC-CSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred hccCCCeEEEEEeCcCcccC-CCHHHHHHHhChhhc-cCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 5 67999999999998753 2222232222 222 235678999999999999999999998764
No 17
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.92 E-value=7.5e-25 Score=184.08 Aligned_cols=131 Identities=25% Similarity=0.423 Sum_probs=102.3
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....++.++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.....
T Consensus 58 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~l~~~~~~~~ 127 (192)
T 2b6h_A 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVQESADELQKMLQEDE 127 (192)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred CCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHhcccc
Confidence 578888777888889999999999999999999999999999999999998 7789999999999887666
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..+.|++||+||+|+..+ ....++.+.+. .. ...++.+++|||++|.||.++|++|.+.+.
T Consensus 128 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 128 LRDAVLLVFANKQDMPNA-MPVSELTDKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGC-SSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccc-cCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 678999999999998653 11122222211 11 335678999999999999999999998764
No 18
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.92 E-value=8.6e-25 Score=182.87 Aligned_cols=133 Identities=19% Similarity=0.296 Sum_probs=104.5
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|.....+..++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 121 (188)
T 1zd9_A 52 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQ 121 (188)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred CCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcc
Confidence 356676666677788999999999999999999999999999999999998 7889999999998887655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
..+.|++||+||+|+..+ ....++.+.+.. .....++.+++|||++|.||.++|++|.+.+..
T Consensus 122 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 122 LQGIPVLVLGNKRDLPGA-LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp GTTCCEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred cCCCCEEEEEECCCCccC-CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 578999999999998753 111122221110 002356788999999999999999999886643
No 19
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.92 E-value=1.4e-24 Score=180.43 Aligned_cols=130 Identities=16% Similarity=0.268 Sum_probs=105.1
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
..||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+....
T Consensus 49 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~ 118 (181)
T 2h17_A 49 TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHE 118 (181)
T ss_dssp EECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTCG
T ss_pred cCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCh
Confidence 3567777777788888999999999999999999999999999999999998 788999999999888765
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
...+.|+++|+||+|+..+ ....++.+.+ ..+ ...++.+++|||++|.||.++|++|.+.
T Consensus 119 ~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 119 DLRKAGLLIFANKQDVKEC-MTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGC-CSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred hhCCCeEEEEEECCCcccC-CCHHHHHHHhCcccc-cCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 4578999999999998653 2222222222 112 3356789999999999999999998764
No 20
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-24 Score=180.04 Aligned_cols=134 Identities=22% Similarity=0.334 Sum_probs=104.9
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+.+++..+.+||++|++.++..|..++++++++++|+|+++ ..++.+...++..+.....
T Consensus 47 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 116 (183)
T 1moz_A 47 KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEEE 116 (183)
T ss_dssp CSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTSST
T ss_pred CCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChh
Confidence 467777777788888999999999999999999999999999999999998 7888999999998877655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..+.|+++|+||+|+..+ ....++.+.+.... ...++.++++||++|.||.++|+++.+.+.++
T Consensus 117 ~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 117 LQDAALLVFANKQDQPGA-LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TSSCEEEEEEECTTSTTC-CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 678999999999998753 22223333322110 23567899999999999999999999988654
No 21
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.92 E-value=2.5e-24 Score=179.33 Aligned_cols=133 Identities=20% Similarity=0.304 Sum_probs=108.3
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....+.+++..+++|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 47 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 116 (186)
T 1ksh_A 47 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEER 116 (186)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred cccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhChh
Confidence 456677777788889999999999999999999999999999999999998 7889999999999887655
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..+.|+++|+||+|+..+. ...++.+.+. .. ...++.+++|||++|.|+.++|+++.+.+.++
T Consensus 117 ~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 117 LAGATLLIFANKQDLPGAL-SCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp GTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGC-CSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred cCCCcEEEEEeCccCCCCC-CHHHHHHHhChhhc-cCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 6789999999999987642 2122222221 11 34577899999999999999999999987654
No 22
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.91 E-value=2e-24 Score=180.96 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=97.3
Q ss_pred eeeecceeEEEEEe-----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318 155 RVKTTGIIETHFTF-----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS 229 (313)
Q Consensus 155 ~~~T~g~~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 229 (313)
..||+|+......+ ..+.+++|||+|++.++..|..++++++++|+|+|+++. ...+ ....+.+...|+..
T Consensus 53 ~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~--~~~~--~~~s~~~l~~~l~~ 128 (198)
T 3t1o_A 53 DERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN--RLRA--NAESMRNMRENLAE 128 (198)
T ss_dssp SCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGG--GHHH--HHHHHHHHHHHHHH
T ss_pred cccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcc--hhhH--hHHHHHHHHHHHHh
Confidence 44666654433222 347899999999999999999999999999999999941 0000 13445555555555
Q ss_pred HHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 230 ICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 230 ~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+ .....++|++||+||+|+..+ ....+..+.+. ..++ .++++||++|.||.++|++|.+.+.++.
T Consensus 129 ~--~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 129 Y--GLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVD----PEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp T--TCCTTSSCEEEEEECTTSTTC-CCHHHHHHHHC----TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred h--ccccCCCCEEEEEEchhcccc-cCHHHHHHHHH----hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 4 234467999999999998764 33333333332 2455 7899999999999999999999987663
No 23
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=2.4e-24 Score=178.86 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=82.9
Q ss_pred EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...++|+
T Consensus 48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~pi 116 (183)
T 2fu5_C 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIRNWIRNIEEH-ASADVEK 116 (183)
T ss_dssp EEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCTTCEE
T ss_pred EEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCCE
Confidence 3445554 789999999999999999999999999999999998 67777777777776543 2357899
Q ss_pred EEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318 242 ILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303 (313)
Q Consensus 242 ilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~ 303 (313)
+||+||+|+..++. ...+..... ...++.+++|||++|.||.++|++|.+.+..+..+
T Consensus 117 ilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 117 MILGNKCDVNDKRQVSKERGEKLA----LDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp EEEEEC--CCSCCCSCHHHHHHHH----HHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECccCCccCcCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999875422 112222211 12356899999999999999999999998876443
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=174.16 Aligned_cols=128 Identities=19% Similarity=0.297 Sum_probs=98.7
Q ss_pred eEEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318 162 IETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT 239 (313)
Q Consensus 162 ~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~ 239 (313)
....+.+.+ +.+.+||++|++.++..|..++.+++++|+|+|+++ ..++.+...|+..+... ..+.
T Consensus 47 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~ 114 (181)
T 3tw8_B 47 KIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----------AESFVNVKRWLHEINQN--CDDV 114 (181)
T ss_dssp EEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH--CTTS
T ss_pred EEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCC
Confidence 334455555 789999999999999999999999999999999998 67788777777777543 2478
Q ss_pred cEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhh
Q psy8318 240 SIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKD 304 (313)
Q Consensus 240 piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~ 304 (313)
|++||+||+|+..++.........+. ...++.++++||++|.|+.++|+++.+.+.....+.
T Consensus 115 p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 115 CRILVGNKNDDPERKVVETEDAYKFA---GQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHH---HHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchhcccCHHHHHHHH---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99999999998765322212111121 113567899999999999999999999998765544
No 25
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.90 E-value=1.3e-23 Score=173.64 Aligned_cols=119 Identities=13% Similarity=0.196 Sum_probs=80.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEee
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLN 246 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~N 246 (313)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ....+.|+++|+|
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 126 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------ASSFENIKSWRDEFLVHANVNSPETFPFVILGN 126 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEE
Confidence 3689999999999999999999999999999999998 66666666666665442 2235789999999
Q ss_pred cCCccccc-c-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 247 KNDLFQEK-I-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 247 K~Dl~~~k-~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
|+|+.... . ....... +.. ....+.++++||++|.||.++|++|.+.+.+++
T Consensus 127 K~Dl~~~~~~v~~~~~~~-~~~--~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 127 KIDAEESKKIVSEKSAQE-LAK--SLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp CTTSCGGGCCSCHHHHHH-HHH--HTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCccccccccCCHHHHHH-HHH--hcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 99985432 1 1112222 111 024567899999999999999999999887653
No 26
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=177.94 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=95.7
Q ss_pred EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++++...|+..+.... ..++|
T Consensus 68 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~-~~~~p 136 (201)
T 2hup_A 68 MKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK----------RSSFLSVPHWIEDVRKYA-GSNIV 136 (201)
T ss_dssp EEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB----------HHHHHTHHHHHHHHHHHS-CTTCE
T ss_pred EEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCC
Confidence 34455544 789999999999999999999999999999999998 677777777777775532 35789
Q ss_pred EEEEeecCCccccc-ccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 241 IILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 241 iilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
++||+||+|+..++ +...+..+.. ...++ .+++|||++|.||.++|++|.+.+..+
T Consensus 137 iilv~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 137 QLLIGNKSDLSELREVSLAEAQSLA----EHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHH----HHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEEECCccccccccCHHHHHHHH----HHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999987642 2222222221 12355 789999999999999999999998765
No 27
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.90 E-value=3.5e-24 Score=176.71 Aligned_cols=131 Identities=17% Similarity=0.262 Sum_probs=93.5
Q ss_pred eecc--eeEEEEEecC---ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 157 KTTG--IIETHFTFKD---LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 157 ~T~g--~~~~~~~~~~---~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
||+| +....+.+.+ ..+++||++|++.++..|..++++++++|+|+|+++ ..++++...|+..+.
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 106 (178)
T 2hxs_A 37 QTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN----------YQSFENLEDWYTVVK 106 (178)
T ss_dssp HTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4444 3344555544 789999999999999999999999999999999998 566666666665554
Q ss_pred hCC-CCCCCc-EEEEeecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 232 NSK-WFMDTS-IILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 232 ~~~-~~~~~p-iilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
... ...+.| ++||+||+|+..++ +....... +. ...++.++++||++|.||.++|++|.+.+.+..
T Consensus 107 ~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 107 KVSEESETQPLVALVGNKIDLEHMRTIKPEKHLR-FC---QENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHH-HH---HHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred HHhcccCCCCeEEEEEEccccccccccCHHHHHH-HH---HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 310 011344 89999999987642 21112222 21 123568899999999999999999999886543
No 28
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.90 E-value=1.9e-23 Score=173.62 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=93.4
Q ss_pred EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
..+..++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.... ..+.|+
T Consensus 50 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pi 118 (186)
T 2bme_A 50 KIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNALTNWLTDARMLA-SQNIVI 118 (186)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 3444444 789999999999999999999999999999999998 667777777776654422 257899
Q ss_pred EEEeecCCcccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 242 ILFLNKNDLFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 242 ilv~NK~Dl~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+||+||+|+..++... .+... +. ...++.++++||++|.||.++|+++.+.+.++
T Consensus 119 ilv~nK~Dl~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 119 ILCGNKKDLDADREVTFLEASR-FA---QENELMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp EEEEECGGGGGGCCSCHHHHHH-HH---HHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHH-HH---HHcCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999986532111 12221 11 22457899999999999999999999988765
No 29
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.90 E-value=2.7e-23 Score=169.40 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=79.9
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
..+.+.+||++|++.++..|..++++++++++|+|+++ ..++++...++..+.......++|+++|+||+
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTC----------HHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 34678999999999999999999999999999999998 78888888898888776556789999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..++....+....+. ...++.++++||++|.|+.++|+++.+.+..+
T Consensus 117 Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 117 DLVRSREVSVDEGRACA---VVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp TCCSSCCSCHHHHHHHH---HHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHH---HHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 98754322222222222 12457899999999999999999999988654
No 30
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.90 E-value=3.4e-23 Score=173.42 Aligned_cols=122 Identities=15% Similarity=0.191 Sum_probs=94.3
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+++ +.+++||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+... ...+.|++
T Consensus 62 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~l~~i~~~-~~~~~pii 130 (191)
T 2a5j_A 62 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQH-SSSNMVIM 130 (191)
T ss_dssp EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred EEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEE
Confidence 444443 689999999999999999999999999999999998 67777777777776543 23578999
Q ss_pred EEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 243 LFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 243 lv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
||+||+|+..++. ....... +. ...++.++++||++|.||.++|++|.+.+.++.
T Consensus 131 lv~nK~Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 131 LIGNKSDLESRRDVKREEGEA-FA---REHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp EEEECTTCGGGCCSCHHHHHH-HH---HHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEECcccCCccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999865322 1112222 11 123568999999999999999999999987653
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.90 E-value=2.2e-23 Score=172.08 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=93.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+||++|++.++..|..++++++++++|+|+++ ..++.+...++..++......+.|+++|+||+|+
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND----------RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 678999999999999999999999999999999998 7788888888888765444567899999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
...+.........+. ...++.++++||++|.|+.++|++|.+.+.+.
T Consensus 127 ~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 127 ESQRQVPRSEASAFG---ASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp GGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHH---HHcCCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 764222111112222 22467899999999999999999999988765
No 32
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=176.59 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=93.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.......++|++||+||+
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS----------LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC----------HHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 56789999999999999999999999999999999998 78888888888888765555678999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
|+..++.........+. ...++.++++||++|.||.++|++|.+.+.+..
T Consensus 140 Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 140 DLSPEREVQAVEGKKLA---ESWGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp TCGGGCCSCHHHHHHHH---HHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred cCccccccCHHHHHHHH---HHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 98754322211111221 124568999999999999999999999987654
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=3.1e-23 Score=173.07 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=93.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......+.|+++|+||+|
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN----------EQSFLNVRNWISQLQMHAYSENPDIVLCGNKSD 138 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3589999999999999999999999999999999998 677777778888776654446789999999999
Q ss_pred ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+..++.. .....+... ..++.++++||++|.||.++|++|.+.+.++.
T Consensus 139 l~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 139 LEDQRAVKEEEARELAE----KYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp CGGGCCSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHH----HcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 8764221 122222211 13467899999999999999999999987654
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.89 E-value=2e-23 Score=172.61 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=90.5
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++++...++..+.... ..+.|+++|+||+|
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D 128 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCc
Confidence 4689999999999999999999999999999999998 677788888887776532 35789999999999
Q ss_pred cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+...+. ...+..+.. ...++.++++||++|.||.++|++|.+.+..
T Consensus 129 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 129 LLDARKVTAEDAQTYA----QENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CTTTCCSCHHHHHHHH----HHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ccccccCCHHHHHHHH----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 865321 112222221 1245789999999999999999999887654
No 35
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3e-23 Score=173.60 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=93.5
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......+.|++||+||+
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~ 131 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR----------RDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 131 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECC
Confidence 34789999999999999999999999999999999998 67777777788877654444678999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+....+......... ...++.++++||+++.||.++|++|.+.+.+.
T Consensus 132 Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 132 DKENREVDRNEGLKFA----RKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TSSSCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred cCcccccCHHHHHHHH----HHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 9854333222222221 22456799999999999999999999988753
No 36
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=172.93 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=93.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
....+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+... ...+.|++||+||+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~ 140 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK----------HQTYAVVERWLKELYDH-AEATIVVMLVGNKS 140 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHTT-SCTTCEEEEEEECG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCeEEEEEECC
Confidence 34789999999999999999999999999999999998 67777777777777543 23578999999999
Q ss_pred Cccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 249 DLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 249 Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
|+...+.. ...... +. ...++.++++||++|.||.++|++|.+.+.++.
T Consensus 141 Dl~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 141 DLSQAREVPTEEARM-FA---ENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp GGGGGCCSCHHHHHH-HH---HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CcccccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 98764211 112221 21 124578999999999999999999999987653
No 37
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.89 E-value=3.1e-23 Score=173.03 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=90.0
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+.+ +.+++|||+|++.++ ++++++++++|+|+++ ..++++...|+..+.......+.|++
T Consensus 59 ~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii 123 (184)
T 3ihw_A 59 EIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED----------EISFQTVYNYFLRLCSFRNASEVPMV 123 (184)
T ss_dssp EEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHTTSCGGGSCEE
T ss_pred EEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 344444 678899999998776 7889999999999998 78888888888888765444678999
Q ss_pred EEeecCCcccc---cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 243 LFLNKNDLFQE---KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 243 lv~NK~Dl~~~---k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|++||+|+... .+...+.......+ ..+.+++|||++|.||.++|+++.+.+.+.
T Consensus 124 lv~nK~Dl~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 124 LVGTQDAISAANPRVIDDSRARKLSTDL---KRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp EEEECTTCBTTBCCCSCHHHHHHHHHHT---TTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEECcccccccccccCHHHHHHHHHHc---CCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 99999998532 12222222222222 236789999999999999999999988765
No 38
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.89 E-value=3.8e-23 Score=174.92 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=89.7
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEeec
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLNK 247 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~NK 247 (313)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ....+.|++||+||
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA----------PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 689999999999999999999999999999999998 56666665666555432 22246899999999
Q ss_pred CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+|+................ ..++.++++||++|.||.++|++|.+.+.+..
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 127 IDLENRQVATKRAQAWCYS---KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TTSSCCCSCHHHHHHHHHH---TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHh---cCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9987432222222222110 24567899999999999999999999987654
No 39
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=6.3e-23 Score=173.76 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=93.4
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.... ..+.|++
T Consensus 49 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~pii 117 (206)
T 2bcg_Y 49 TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEIDRYA-TSTVLKL 117 (206)
T ss_dssp EEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEE
T ss_pred EEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCCEE
Confidence 444443 689999999999999999999999999999999998 677777777777665432 3478999
Q ss_pred EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
||+||+|+..++....+....+. ...++.++++||++|.||.++|++|.+.+...
T Consensus 118 lv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 118 LVGNKCDLKDKRVVEYDVAKEFA---DANKMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp EEEECTTCTTTCCSCHHHHHHHH---HHTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999998764221111111121 12356789999999999999999999988764
No 40
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=5.2e-23 Score=172.44 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=95.7
Q ss_pred EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
...+.+.+ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+... ...+.|
T Consensus 55 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p 123 (196)
T 3tkl_A 55 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEIDRY-ASENVN 123 (196)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCE
T ss_pred EEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCC
Confidence 34455544 789999999999999999999999999999999998 67777777777666442 235789
Q ss_pred EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
++||+||+|+..++.........+. ...++.++++||++|.||.++|++|.+.+..+.
T Consensus 124 ~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 124 KLLVGNKCDLTTKKVVDYTTAKEFA---DSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHHH---HHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EEEEEECcccccccccCHHHHHHHH---HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999998764322211112222 124567999999999999999999999998654
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=4.6e-23 Score=169.86 Aligned_cols=130 Identities=12% Similarity=0.200 Sum_probs=94.4
Q ss_pred eeccee--EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 157 KTTGII--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 157 ~T~g~~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++++|+|+++ ..++.+...|+..+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~ 107 (177)
T 1wms_A 38 HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD----------SQSFQNLSNWKKEFIY 107 (177)
T ss_dssp -CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHH
T ss_pred CceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHH
Confidence 444533 33444444 689999999999999999999999999999999998 5666665555555543
Q ss_pred ---CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 233 ---SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 233 ---~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.....+.|+++|+||+|+...........+.... ...+.++++||++|.|+.++|+++.+.+++
T Consensus 108 ~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 108 YADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---NGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH---TTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HccccccCCCcEEEEEECCcccccccCHHHHHHHHHh---cCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2223578999999999987433322222222211 245678999999999999999999998864
No 42
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=4.1e-23 Score=171.04 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=91.8
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..++++++++++|+|+++ ..+++....++..+.......++|++||+||+|+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS----------IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 678999999999999999999999999999999998 7888888888888766544567899999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
..++....+....+. ...++.++++||++|.||.++|+++.+.+...+
T Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 124 HMERVISYEEGKALA---ESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TTTCCSCHHHHHHHH---HHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred hhcceecHHHHHHHH---HHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 654322211111122 224568999999999999999999999887553
No 43
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.1e-23 Score=176.39 Aligned_cols=118 Identities=16% Similarity=0.236 Sum_probs=92.8
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..+++....|+..+.. ....+.|++||+||+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~ 138 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWATQIKT-YSWDNAQVILVGNKC 138 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEEEEEEECT
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hcCCCCCEEEEEECC
Confidence 45789999999999999999999999999999999998 6777766676666644 234578999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..++....+....+. ...++.++++||++|.||.++|++|.+.+.++
T Consensus 139 Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 139 DMEEERVVPTEKGQLLA---EQLGFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TCGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCccccccCHHHHHHHH---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 98764332222222222 12456899999999999999999999988765
No 44
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.89 E-value=2.4e-23 Score=172.74 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=90.8
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......+.|++||+||+|+
T Consensus 66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD----------KASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 567889999999999999999999999999999998 6777777777777765444467899999999998
Q ss_pred cccccc-CCcccccCcCCCCCCCeEEEEeecc-cCcCHHHHHHHHHHHHHH
Q psy8318 251 FQEKIT-KSPLTVCFPEYTDQKEIYTHFTCAT-DTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 251 ~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~-~~~~v~~~f~~i~~~i~~ 299 (313)
...+.. ..+...... ..++.++++||+ +|.||.++|+++.+.+.+
T Consensus 136 ~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 136 MHLRKVTRDQGKEMAT----KYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp STTCCSCHHHHHHHHH----HHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hhccCcCHHHHHHHHH----HhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 753222 222222221 134679999999 999999999999998864
No 45
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.8e-23 Score=187.48 Aligned_cols=133 Identities=23% Similarity=0.384 Sum_probs=104.6
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....++.+++.+++|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~----------~~s~~~~~~~~~~~~~~~~ 263 (329)
T 3o47_A 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDE 263 (329)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC----------SSSHHHHHHHHHHHHTCGG
T ss_pred ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------hHHHHHHHHHHHHHHhhhc
Confidence 478898888888899999999999999999999999999999999999998 7889999999999887766
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
..++|++||+||+|+..+. ...++...+.. +....++.+++|||++|.||.++|++|.+.+.+
T Consensus 264 ~~~~piilV~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 264 LRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp GTTCEEEEEEECTTSTTCC-CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred cCCCeEEEEEECccCCccc-CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 6789999999999987642 11122221111 113457889999999999999999999988754
No 46
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.5e-23 Score=171.01 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=81.0
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.... ..+.|++||+||+|+
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl 128 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN----------KASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDS 128 (180)
T ss_dssp EEEEEEECCCC--------CCGGGCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCST
T ss_pred EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccc
Confidence 689999999999999999999999999999999998 566666666666665432 257899999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
..++....+....+. ...++.++++||++|.||.++|+++.+.+.++.
T Consensus 129 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 129 AHERVVKREDGEKLA---KEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TSCCCSCHHHHHHHH---HHHTCCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred CcccccCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 754221111111111 123567899999999999999999999886543
No 47
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.89 E-value=4.9e-23 Score=174.02 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=94.1
Q ss_pred EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
..+.+++ ..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|+
T Consensus 65 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pi 133 (200)
T 2o52_A 65 RVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNSLAAWLTDARTLA-SPNIVV 133 (200)
T ss_dssp EEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHT-CTTCEE
T ss_pred EEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 3444444 789999999999999999999999999999999998 677777777777765432 257899
Q ss_pred EEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 242 ILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 242 ilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+||+||+|+..++.. ..+... +. ...++.+++|||++|.||.++|++|.+.+..+
T Consensus 134 ilv~nK~Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 134 ILCGNKKDLDPEREVTFLEASR-FA---QENELMFLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp EEEEECGGGGGGCCSCHHHHHH-HH---HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999998654221 112221 11 22457899999999999999999999998765
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=7.4e-23 Score=173.35 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=92.0
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+++ +.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...+.|++
T Consensus 67 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~-~~~~~pii 135 (201)
T 2ew1_A 67 TVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQY-ASNKVITV 135 (201)
T ss_dssp EEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEE
Confidence 444544 689999999999999999999999999999999998 66676666666665432 23568999
Q ss_pred EEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 243 LFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 243 lv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
||+||+|+..++. ....... +. ...++.+++|||++|.||.++|+++.+.+..+
T Consensus 136 lv~NK~Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 136 LVGNKIDLAERREVSQQRAEE-FS---EAQDMYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp EEEECGGGGGGCSSCHHHHHH-HH---HHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999875321 1112211 21 12356789999999999999999999988765
No 49
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.89 E-value=5.6e-23 Score=167.44 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=90.4
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+.+||++|++.++..|..++++++++++|+|+++ ..++.+...++..+.......+.|+++++||+|
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTT
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcc
Confidence 4679999999999999999999999999999999998 677777777777776543346789999999999
Q ss_pred ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..++.. ..........+ ..+.++++||++|.|+.++|+++.+.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 120 LEDERVVGKEQGQNLARQW---CNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CGGGCCSCHHHHHHHHHHT---TSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHc---cCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 8764322 12222221111 256799999999999999999998876
No 50
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.89 E-value=1.4e-22 Score=169.36 Aligned_cols=116 Identities=18% Similarity=0.246 Sum_probs=90.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...+.|++||+||+|
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D 138 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN----------QESFAAVQDWATQIKTY-SWDNAQVILVGNKCD 138 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence 4789999999999999999999999999999999998 66777777777666442 235789999999999
Q ss_pred cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+..++... ....+.. ...++.++++||++|.|+.++|++|.+.+.++
T Consensus 139 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 139 LEDERVVPAEDGRRLA----DDLGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp CGGGCCSCHHHHHHHH----HHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 87642211 1222211 11356899999999999999999999988654
No 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.89 E-value=4e-23 Score=176.42 Aligned_cols=118 Identities=18% Similarity=0.286 Sum_probs=92.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++|||+|+++ ..++.+...|+..+.......++|++||+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 5789999999999999999999999999999999998 677777777777665443336799999999999
Q ss_pred ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+..++.. .....+ +. ...++.+++|||++|.||.++|++|.+.+.++.
T Consensus 153 l~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 153 LPDQREVNERQARE-LA---DKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp CGGGCCSCHHHHHH-HH---HHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred cccccccCHHHHHH-HH---HHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 8764221 112222 11 123567899999999999999999999987653
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.89 E-value=4.5e-23 Score=167.84 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=89.2
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+.+||++|++.++..|..++++++++++|+|+++ ..++.....++..+.......+.|+++++||+|
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 120 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD 120 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 3689999999999999999999999999999999998 677888878877776644445789999999999
Q ss_pred cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+..++. ...+..... ...++.++++||++|.|+.++|+++.+.+.+
T Consensus 121 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 121 LEDKRQVSVEEAKNRA----DQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp GGGGCCSCHHHHHHHH----HHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccccCccCHHHHHHHH----HHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 875422 111222221 1235679999999999999999999998753
No 53
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.89 E-value=6e-23 Score=167.90 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=80.9
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|+++|+||+|+
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 123 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDL 123 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGG
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCeEEEEEECccc
Confidence 689999999999999999999999999999999998 66777776666665432 2246899999999998
Q ss_pred ccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..++. ...+..+.. ...++.++++||++|.|+.++|++|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 124 EKERHVSIQEAESYA----ESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp GGGCCSCHHHHHHHH----HHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 76422 111222221 123567899999999999999999998875
No 54
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=9.9e-23 Score=167.37 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=84.2
Q ss_pred ceeeeEecCCCcc--ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 171 LHFKMFDVGGQRS--ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 171 ~~~~i~D~~Gq~~--~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+.+.+||++|++. ++..+..++++++++++|+|+++ ..++.....++..+.......+.|+++|+||+
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~ 121 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIAD----------RGSFESASELRIQLRRTHQADHVPIILVGNKA 121 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTC----------HHHHHHHHHHHHHHHHCC----CCEEEEEECT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhccCCCCEEEEEECh
Confidence 5789999999988 56677788999999999999998 77888888888777665444579999999999
Q ss_pred Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
|+..++ +...+... +. ...++.+++|||++|.||.++|++|.+.+..+.
T Consensus 122 Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 122 DLARCREVSVEEGRA-CA---VVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp TCTTTCCSCHHHHHH-HH---HHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hhccccccCHHHHHH-HH---HHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 987532 21111111 11 113467999999999999999999999887543
No 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=3.4e-23 Score=169.03 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=88.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.... ..+.|+++++||+|
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 119 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK----------PQSFIKARHWVKELHEQA-SKDIIIALVGNKID 119 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGG
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC----------hHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCC
Confidence 4689999999999999999999999999999999998 677888878877776532 35789999999999
Q ss_pred cccccccCC---cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITKS---PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~~---~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..+.-... .....+. ...++.++++||++|.|+.++|+++.+.+
T Consensus 120 l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 120 XLQEGGERKVAREEGEKLA---EEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp GGGSSCCCCSCHHHHHHHH---HHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ccccccccCCCHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 875411111 1111111 12356899999999999999999998754
No 56
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=171.60 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=94.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......+.|++||+||+|+
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 689999999999999999999999999999999998 6788888888888766544457999999999998
Q ss_pred cccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 251 FQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 251 ~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
...+ +...+...... ..++.++++||++|.||.++|++|.+.+..+..
T Consensus 132 ~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 132 EDKRQVSVEEAKNRAE----QWNVNYVETSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp GGGCCSCHHHHHHHHH----HHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHH----HhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence 7642 11122222221 235679999999999999999999999987543
No 57
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.88 E-value=6.8e-23 Score=171.92 Aligned_cols=123 Identities=17% Similarity=0.190 Sum_probs=91.5
Q ss_pred EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.. ....+.|+
T Consensus 66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~~~~i~~-~~~~~~pi 134 (192)
T 2il1_A 66 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMIDK-YASEDAEL 134 (192)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEE
T ss_pred EEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hcCCCCcE
Confidence 3444443 689999999999999999999999999999999998 5666666666555433 23357899
Q ss_pred EEEeecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 242 ILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 242 ilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+||+||+|+..++ +...........+ .++.++++||++|.||.++|++|.+.+.++
T Consensus 135 ilV~NK~Dl~~~~~v~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 135 LLVGNKLDCETDREITRQQGEKFAQQI---TGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHTS---TTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEEECcccccccccCHHHHHHHHHhc---CCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999987542 2112222221111 356889999999999999999999988643
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.88 E-value=9e-23 Score=169.27 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=94.3
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.......+.|++||+||+|+
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 689999999999999999999999999999999998 6778888888877766444457899999999998
Q ss_pred ccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 251 FQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 251 ~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
..++. ...+..+.. ...++.++++||+++.||.++|++|.+.+..+..
T Consensus 136 ~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 136 EDKRQVSVEEAKNRA----EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp GGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCccCHHHHHHHH----HHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 76421 112222222 1235689999999999999999999999876643
No 59
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=170.29 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=87.8
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+.+.+||++|++.++..|..++.+++++|+|+|+++ ..++.+.. .|+..+... ..+.|++||+||+|
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D 135 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS----------PSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSD 135 (201)
T ss_dssp EEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGG
T ss_pred EEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHh
Confidence 678899999999999999999999999999999998 67777776 466555432 23789999999999
Q ss_pred cccccc-------------cCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 250 LFQEKI-------------TKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 250 l~~~k~-------------~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+..+.. ....... +. ...+. .+++|||++|.||.++|++|.+.+....
T Consensus 136 l~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 136 LREDVKVLIELDKCKEKPVPEEAAKL-LA---EEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp GGGCHHHHHHHHTTTCCCCCHHHHHH-HH---HHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred hhhchhhhhhhcccccccCCHHHHHH-HH---HhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 875311 1111111 11 11233 7899999999999999999999887654
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.88 E-value=1.2e-22 Score=165.89 Aligned_cols=113 Identities=17% Similarity=0.222 Sum_probs=89.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.... ..+.|++||+||+|
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D 122 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN----------EESFARAKNWVKELQRQA-SPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence 5789999999999999999999999999999999998 677887777877776532 35789999999999
Q ss_pred cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+..++... .+..... ...++.++++||++|.|+.++|++|.+.+
T Consensus 123 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 123 LANKRAVDFQEAQSYA----DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp GGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CccccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 86542211 1222211 22457899999999999999999998754
No 61
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.88 E-value=9.5e-23 Score=166.66 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=87.7
Q ss_pred CceeeeEecCCCccccc-cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~-~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+.+||++|++.++. .|..++++++++++|+|+++ ..++.+...++..+.......++|+++|+||+
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCC----------hHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 36788999999998876 88888999999999999998 78888888888888775555689999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..++....+....+. ...++.++++||++|.|+.++|+++.+.+..+
T Consensus 120 Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 120 DLARSREVSLEEGRHLA---GTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TCGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred chhhcccCCHHHHHHHH---HHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 98754222212112222 22456899999999999999999999988654
No 62
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.5e-22 Score=169.78 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=90.3
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
....+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...+.|+++|+||+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~ 138 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK----------QDSFYTLKKWVKELKEH-GPENIVMAIAGNKC 138 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------THHHHHHHHHHHHHHHH-SCTTCEEEEEEECG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEECc
Confidence 34789999999999999999999999999999999998 67777777777766543 23578999999999
Q ss_pred Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|+..++ +...+..+.. ...++.++++||++|.||.++|++|.+.+.+
T Consensus 139 Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 139 DLSDIREVPLKDAKEYA----ESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp GGGGGCCSCHHHHHHHH----HTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ccccccccCHHHHHHHH----HHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 987532 2222222222 2245789999999999999999999887643
No 63
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=2.7e-22 Score=192.43 Aligned_cols=134 Identities=25% Similarity=0.407 Sum_probs=109.6
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.||+|+....++++++.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 351 ~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~----------~~s~~~~~~~~~~~~~~~~ 420 (497)
T 3lvq_E 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDRE 420 (497)
T ss_dssp CCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTSGG
T ss_pred CCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcc----------hhHHHHHHHHHHHHhhhhh
Confidence 468888888889999999999999999999999999999999999999998 7899999999999988776
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
..++|++||+||+|+..+ ....++...+.. ......+.+++|||++|+||.++|++|.+.+.+.
T Consensus 421 ~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 421 MRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp GTTCEEEEEEECCSSSSC-CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred cCCCcEEEEEECCCCCcC-CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 778999999999998753 222222222211 1133567899999999999999999999877543
No 64
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.88 E-value=6.8e-23 Score=171.24 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=90.5
Q ss_pred EEEEecC--ceeeeEecCCCcccc-ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 164 THFTFKD--LHFKMFDVGGQRSER-KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 164 ~~~~~~~--~~~~i~D~~Gq~~~r-~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
..+.+++ +.+.+||++|++.++ ..|..++++++++|+|+|+++ ..++.....|+..+.......+.|
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~p 129 (189)
T 1z06_A 60 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEECKQHLLANDIP 129 (189)
T ss_dssp EEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHCCCSCCC
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444443 789999999999998 899999999999999999998 677777777777776544346789
Q ss_pred EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccC---cCHHHHHHHHHHHHH
Q psy8318 241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDT---SNIQFVFDAVTDVII 298 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~---~~v~~~f~~i~~~i~ 298 (313)
++||+||+|+..++....+....+. ...++.++++||+++ +||.++|++|.+.+.
T Consensus 130 iilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 130 RILVGNKCDLRSAIQVPTDLAQKFA---DTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHH---HHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEEEEECccccccceeCHHHHHHHH---HHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9999999998754221111112222 124567899999999 999999999988764
No 65
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.88 E-value=7.4e-23 Score=171.69 Aligned_cols=116 Identities=13% Similarity=0.182 Sum_probs=87.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+....|...+.. ...+.|++||+||+|
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D 138 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN----------RTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVD 138 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HCTTSEEEEEEECGG
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChh
Confidence 4678999999999999999999999999999999998 77777764433333332 235789999999999
Q ss_pred ccccc---ccCCcccccCcCCCCCCCeE-EEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEK---ITKSPLTVCFPEYTDQKEIY-THFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k---~~~~~l~~~f~~~~~~~~~~-~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+..+. +.......... ..++. ++++||++|.||.++|+++.+.+..+
T Consensus 139 l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 139 LRKDGSDDVTKQEGDDLCQ----KLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp GCCTTTTCCCHHHHHHHHH----HHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred hccCCCCcccHHHHHHHHH----hcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 87531 11112222111 12344 89999999999999999999988754
No 66
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=4.9e-23 Score=167.93 Aligned_cols=114 Identities=14% Similarity=0.171 Sum_probs=89.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++++|+|+++ ..++.+...++..+.... .+.|+++|+||+|
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~piilv~nK~D 120 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD----------RESFEAISSWREKVVAEV--GDIPTALVQNKID 120 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHH--CSCCEEEEEECGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence 4689999999999999999999999999999999998 666777777777665432 5689999999999
Q ss_pred cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+...+. ......... ...++.++++||++|.|+.++|++|.+.+.+
T Consensus 121 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 121 LLDDSCIKNEEAEGLA----KRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp GGGGCSSCHHHHHHHH----HHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred cCcccccCHHHHHHHH----HHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 875422 122222221 1235688999999999999999999987753
No 67
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.88 E-value=8.1e-23 Score=168.38 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=88.4
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|+++|+||+|
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D 131 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNL-TNPNTVIILIGNKAD 131 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTT
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC----------HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcc
Confidence 4689999999999999999999999999999999998 56666666666665442 224789999999999
Q ss_pred ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+..++ +...+..+.. ...++.++++||++|.||.++|+++.+.+.+
T Consensus 132 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 132 LEAQRDVTYEEAKQFA----EENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cccccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 86532 1112222222 1245789999999999999999999987753
No 68
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.88 E-value=1.4e-22 Score=171.12 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=91.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...+.|++||+||+|
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D 124 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCD 124 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTT
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence 4789999999999999999999999999999999998 67777777777776542 235789999999999
Q ss_pred cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
+...+... ..... +. ...++.++++||++|.||.++|++|.+.+.++.
T Consensus 125 l~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 125 MEDERVVSSERGRQ-LA---DHLGFEFFEASAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp CTTSCCSCHHHHHH-HH---HHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred cCcccccCHHHHHH-HH---HHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 86542211 11111 11 113567999999999999999999999887654
No 69
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.88 E-value=6.2e-23 Score=175.42 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=88.5
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.++ ..|+..+... ..++|++||+||
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK 140 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWRTEILDY--CPSTRVLLIGCK 140 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------THHHHHHHTHHHHHHHHH--CTTSEEEEEEEC
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 44789999999999999999999999999999999998 7788774 4455555432 257899999999
Q ss_pred CCcccc-------------cccCCcccccCcCCCCCCCe-EEEEeecccCcC-HHHHHHHHHHHHHHh
Q psy8318 248 NDLFQE-------------KITKSPLTVCFPEYTDQKEI-YTHFTCATDTSN-IQFVFDAVTDVIIKA 300 (313)
Q Consensus 248 ~Dl~~~-------------k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~-v~~~f~~i~~~i~~~ 300 (313)
+|+..+ .+...+... +. ...++ .+++|||++|.| |.++|+++.+.+...
T Consensus 141 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 141 TDLRTDLSTLMELSHQKQAPISYEQGCA-IA---KQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp GGGGGCHHHHHHHHHTTCCCCCHHHHHH-HH---HHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred hhhccchhhhhhhcccccCccCHHHHHH-HH---HHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 998753 111111111 11 22356 789999999998 999999999988644
No 70
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.88 E-value=2.5e-22 Score=164.07 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=88.3
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+... ...+.|+++|+||+|
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK----------EETFSTLKNWVRELRQH-GPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTT
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCc
Confidence 4789999999999999999999999999999999998 66777776777666542 335789999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+...+....+....+. ...++.++++||++|.|+.++|++|.+.+
T Consensus 123 l~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 123 LTDVREVMERDAKDYA---DSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp CGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred cccccccCHHHHHHHH---HHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 8754221111111121 12356899999999999999999998765
No 71
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.88 E-value=1.4e-22 Score=165.54 Aligned_cols=121 Identities=15% Similarity=0.217 Sum_probs=91.3
Q ss_pred EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318 165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242 (313)
Q Consensus 165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii 242 (313)
.+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+... ...+.|++
T Consensus 44 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~pii 112 (170)
T 1g16_A 44 TVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------ERTFTNIKQWFKTVNEH-ANDEAQLL 112 (170)
T ss_dssp EEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred EEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCcEE
Confidence 444433 689999999999999999999999999999999998 56666666677666543 22478999
Q ss_pred EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+|+||+|+.............. ...++.++++||++|.||.++|+++.+.+.++
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 113 LVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp EEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEECccCCcCccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999844322222222211 11346789999999999999999999988654
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.88 E-value=1.7e-22 Score=168.02 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=91.0
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..++++++++++|+|+++ ..++.+...++..+.......+.|+++|+||+|+
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 121 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121 (189)
T ss_dssp EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccC
Confidence 568899999999999999999999999999999998 7788888888887766545567999999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
.............. ...++.++++||++|.|+.++|+++.+.+....
T Consensus 122 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 122 PSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp SSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 75432222222211 113467899999999999999999999987654
No 73
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.88 E-value=5.2e-23 Score=171.99 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=85.0
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CCCCCcEEEEee
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WFMDTSIILFLN 246 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~~~~piilv~N 246 (313)
+.+.+++|||+|++.++. +..++++++++|+|+|+++ ..++.+...|+..+.... ...++|++||+|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDS----------RQSFDSSSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 347899999999998887 4779999999999999998 778888877777765431 124789999999
Q ss_pred cCCccccc-ccCCcccccCcCCCCCCCeEEEEeec-ccCcCHHHHHHHHHHHHH
Q psy8318 247 KNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCA-TDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 247 K~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA-~~~~~v~~~f~~i~~~i~ 298 (313)
|+|+..++ +...+..+.. ...++.+++||| ++|.||.++|++|.+.+.
T Consensus 136 K~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 136 KLDMAQYRQVTKAEGVALA----GRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CGGGGGGCSSCHHHHHHHH----HHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CcchhhcCccCHHHHHHHH----HHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 99986542 2212222211 123568999999 899999999999998774
No 74
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.88 E-value=8.5e-23 Score=166.02 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=91.4
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++++|+|+++ ..++++...++..+.......+.|+++|+||+|
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN----------QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 3569999999999999999999999999999999998 778888888888877654446799999999999
Q ss_pred ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+..++.. ...... +. ...++.++++||++|.|+.++|++|.+.+.+
T Consensus 120 l~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 120 LESEREVSSSEGRA-LA---EEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp GGGGCCSCHHHHHH-HH---HHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHH-HH---HHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 8653221 111111 11 1134578999999999999999999987753
No 75
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.9e-22 Score=173.29 Aligned_cols=123 Identities=14% Similarity=0.220 Sum_probs=92.0
Q ss_pred EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|
T Consensus 52 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~----------~~s~~~~~~~l~~i~~~-~~~~~p 120 (223)
T 3cpj_B 52 TRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK----------SSSYENCNHWLSELREN-ADDNVA 120 (223)
T ss_dssp EEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC----------HHHHHHHHHHHHHHHHH-CC--CE
T ss_pred EEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-CCCCCe
Confidence 33455554 789999999999999999999999999999999998 67788877777776543 235789
Q ss_pred EEEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 241 IILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 241 iilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
++||+||+|+...+. ...+... +. ...++.++++||++|.||.++|++|.+.+.++
T Consensus 121 iilv~nK~Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 121 VGLIGNKSDLAHLRAVPTEESKT-FA---QENQLLFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp EEEEECCGGGGGGCCSCHHHHHH-HH---HHTTCEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred EEEEEECcccccccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999875321 1112222 21 12457899999999999999999999988754
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=4.4e-23 Score=174.39 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=85.9
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEEEeec
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIILFLNK 247 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piilv~NK 247 (313)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+..... ..+.|++||+||
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSS----------MESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTC----------HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 4689999999999999999999999999999999998 6788888888887765432 257899999999
Q ss_pred CCccc-cc-ccCCcccccCcCCCCCCCeEEEEeeccc-CcCHHHHHHHHHHHHHHhhhhh
Q psy8318 248 NDLFQ-EK-ITKSPLTVCFPEYTDQKEIYTHFTCATD-TSNIQFVFDAVTDVIIKANLKD 304 (313)
Q Consensus 248 ~Dl~~-~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~-~~~v~~~f~~i~~~i~~~~~~~ 304 (313)
+|+.. .+ +...+..+... ..++.++++||++ |.||.++|++|.+.+.+...++
T Consensus 142 ~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 142 TDLPPQRHQVRLDMAQDWAT----TNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp C-------CCCHHHHHHHHH----HTTCEEEECCC-------CHHHHHHHHHHHHHHHHH
T ss_pred cccchhhccCCHHHHHHHHH----HcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 99876 32 22222222222 2357899999999 9999999999999888665443
No 77
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.88 E-value=3.6e-22 Score=167.76 Aligned_cols=113 Identities=20% Similarity=0.235 Sum_probs=89.1
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+||++|++.++..|..+++.++++|+|+|+++ ..++.+...|+..+.... +.|+++|+||+|.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN----------SNTLDRAKTWVNQLKISS---NYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS---CCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhC---CCcEEEEEECCCc
Confidence 679999999999999999999999999999999998 677777777777776532 3899999999993
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
........+..+... ..++.++++||++|.|+.++|++|.+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 160 NKFQVDILEVQKYAQ----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp C-CCSCHHHHHHHHH----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHH----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 222222223333222 2456899999999999999999999988754
No 78
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=170.72 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=90.8
Q ss_pred CceeeeEecCCCccccc-cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~-~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+.+||++|++.++. +|..|+++++++|+|+|+++ ..++.+...|+..+.......++|++||+||+
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 36789999999988765 88889999999999999998 77888888888877654433578999999999
Q ss_pred Ccccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..++. ...+... +. ...++.+++|||++|.||+++|+++.+.+...
T Consensus 141 Dl~~~~~v~~~~~~~-~a---~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 141 DLARSREVSLEEGRH-LA---GTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp TCTTTCCSCHHHHHH-HH---HHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred hccccCCcCHHHHHH-HH---HHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 9875322 1112211 21 12346789999999999999999999988654
No 79
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.9e-22 Score=170.26 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=89.0
Q ss_pred ceeeeEecCCCcc-ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRS-ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~-~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+.+.+|||+|+.. ++.++..|++.++++|+|+|+++ ..+++....|+..+.......++|++||+||+|
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~----------~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~D 156 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKSD 156 (211)
T ss_dssp EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChH
Confidence 5678999999987 56677888999999999999998 788888888877775433345799999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+..++....+....+. ...++.+++|||++|.||.++|++|.+.+..+
T Consensus 157 L~~~r~v~~~e~~~~a---~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 157 LVRCREVSVSEGRACA---VVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp CGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HhcCceEeHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 8753221111111111 12356789999999999999999999988643
No 80
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.8e-22 Score=169.65 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=90.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++. +..|..++++++++|+|+|+++ ..++++...++..+.......++|++||+||+|
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 143 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD----------RGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcc
Confidence 47799999999988 8899999999999999999998 677777777777765543345789999999999
Q ss_pred ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCc-CHHHHHHHHHHHHHHh
Q psy8318 250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTS-NIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~-~v~~~f~~i~~~i~~~ 300 (313)
+..++ +...+... +. ...++.++++||++|. ||.++|++|.+.+.++
T Consensus 144 l~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 144 LDHSRQVSTEEGEK-LA---TELACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp GGGGCCSCHHHHHH-HH---HHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred cccccccCHHHHHH-HH---HHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 87642 11112211 11 1235689999999999 9999999999998765
No 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.87 E-value=3.6e-22 Score=166.71 Aligned_cols=120 Identities=15% Similarity=0.086 Sum_probs=80.7
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+||++|++.++..|..+++.++++++|+|+++ ..++.+...++..+.......+.|+++|+||+|+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------SKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 679999999999999999999999999999999998 6677777666666544333346899999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKD 304 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~ 304 (313)
........+..+... ..++.++++||++|.|+.++|++|.+.+.+...++
T Consensus 139 ~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 188 (190)
T 3con_A 139 PTRTVDTKQAHELAK----SYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188 (190)
T ss_dssp SCCCSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred CcccCCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 763222222222221 13457899999999999999999999987765443
No 82
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.87 E-value=2.6e-22 Score=170.44 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=85.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+. ..|+..+... ..+.|++||+||+
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 142 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 142 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEech
Confidence 4789999999999999999999999999999999998 6777776 3455554332 2478999999999
Q ss_pred Cccccc-------------ccCCcccccCcCCCCCCCeEEEEeecc-cCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEK-------------ITKSPLTVCFPEYTDQKEIYTHFTCAT-DTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k-------------~~~~~l~~~f~~~~~~~~~~~~~tSA~-~~~~v~~~f~~i~~~i~~ 299 (313)
|+..+. +...+.......+ ..+.+++|||+ ++.||.++|+++.+.++.
T Consensus 143 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 143 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQI---GAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH---TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhcccccCCCCHHHHHHHHHHc---CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 987421 1111111111111 12578999999 689999999999998764
No 83
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=4.6e-22 Score=166.73 Aligned_cols=112 Identities=12% Similarity=0.143 Sum_probs=85.4
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++||+||+|
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 133 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY--APNVPFLLIGTQID 133 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTCCEEEEEECTT
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence 789999999999999999999999999999999998 67777776 455555432 23789999999999
Q ss_pred ccccc-------------ccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 250 LFQEK-------------ITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 250 l~~~k-------------~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+..+. +...+... +. ...++ .+++|||++|.||.++|++|.+.++
T Consensus 134 l~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 134 LRDDPKTLARLNDMKEKPICVEQGQK-LA---KEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp STTCHHHHHHHTTTTCCCCCHHHHHH-HH---HHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcccccchhhcccccCcccCHHHHHH-HH---HHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 87532 11111111 11 11233 6899999999999999999998875
No 84
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.87 E-value=8.6e-23 Score=183.56 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=92.0
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccc---cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERK---KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~---~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
.||+|+....+. ..+++++||||||++++. .|..||++++++|||+|+++ . +.++..++..++.
T Consensus 32 ~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd----------~--~~~~~~~l~~~l~ 98 (331)
T 3r7w_B 32 ESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD----------E--YINAITNLAMIIE 98 (331)
T ss_dssp CCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS----------C--TTHHHHHHHHHHH
T ss_pred cCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc----------h--HHHHHHHHHHHHH
Confidence 577887766553 458999999999999975 46899999999999999997 3 5555655554432
Q ss_pred C--CCCCCCcEEEEeecCCccccc-------ccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 233 S--KWFMDTSIILFLNKNDLFQEK-------ITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 233 ~--~~~~~~piilv~NK~Dl~~~k-------~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
. ....++|++|++||+|+..+. ....+..+.+.+.. ...++.+++|||++ .||.++|..|.+.++
T Consensus 99 ~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 99 YAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp HHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred HHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 1 123579999999999986531 11112222333221 12578999999998 599999999987765
No 85
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.87 E-value=7.5e-22 Score=168.12 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=85.0
Q ss_pred EEec---CceeeeEecCCCccccc-cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CCCCC
Q psy8318 166 FTFK---DLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WFMDT 239 (313)
Q Consensus 166 ~~~~---~~~~~i~D~~Gq~~~r~-~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~~~~ 239 (313)
+.++ ++.+++|||+|++.++. .|..|+++++++|||+|++++ ...+.+...++..++... ...++
T Consensus 46 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (214)
T 2fh5_B 46 YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLIDSMALKNSP 116 (214)
T ss_dssp EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhhhhhcccCC
Confidence 4454 68899999999999998 899999999999999999872 234666666666665431 23468
Q ss_pred cEEEEeecCCccccccc----------------------------------CCcccccCcCCCCCCCeEEEEeecccC--
Q psy8318 240 SIILFLNKNDLFQEKIT----------------------------------KSPLTVCFPEYTDQKEIYTHFTCATDT-- 283 (313)
Q Consensus 240 piilv~NK~Dl~~~k~~----------------------------------~~~l~~~f~~~~~~~~~~~~~tSA~~~-- 283 (313)
|++||+||+|+..+.-. .....+.|..-.....+.+++|||++|
T Consensus 117 piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~ 196 (214)
T 2fh5_B 117 SLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRG 196 (214)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC----
T ss_pred CEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCc
Confidence 99999999998754210 000011111000012678999999999
Q ss_pred ----cCHHHHHHHHHHH
Q psy8318 284 ----SNIQFVFDAVTDV 296 (313)
Q Consensus 284 ----~~v~~~f~~i~~~ 296 (313)
.||+++|+||.+.
T Consensus 197 ~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 197 DTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCBCHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHh
Confidence 9999999999875
No 86
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.87 E-value=8.6e-22 Score=162.58 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=83.2
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH--hCCCCCCCcEEEEeec
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC--NSKWFMDTSIILFLNK 247 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~--~~~~~~~~piilv~NK 247 (313)
.+.+++||++|++. ..|+++++++|+|+|+++ ..++.+...|++.+. ......++|++||+||
T Consensus 53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (178)
T 2iwr_A 53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLED----------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117 (178)
T ss_dssp EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 36789999999976 467899999999999998 677777766543332 2223357899999999
Q ss_pred CCccc--c-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 248 NDLFQ--E-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 248 ~Dl~~--~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
+|+.. . .+...+..+....+ .++.+++|||++|.||.++|+++.+.+.....
T Consensus 118 ~Dl~~~~~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 118 DRISASSPRVVGDARARALXADM---KRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp TTCBTTBCCCSCHHHHHHHHHHH---SSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcCCHHHHHHHHHhh---cCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence 99842 1 11112222221211 35789999999999999999999999876543
No 87
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.87 E-value=2.5e-22 Score=165.39 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=90.6
Q ss_pred EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
..+.+.+ ..+.+||++|++.++..|..++.+++++|+|+|+++ ..++.+...++..+... ...+.|+
T Consensus 54 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~pi 122 (179)
T 2y8e_A 54 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------TNSFHQTSKWIDDVRTE-RGSDVII 122 (179)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-HTTSSEE
T ss_pred EEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCcE
Confidence 3344444 689999999999999999999999999999999998 66777777777766542 2256899
Q ss_pred EEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 242 ILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 242 ilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
++|+||+|+..++.. ........ ...++.++++||++|.|+.++|++|.+.+.
T Consensus 123 ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 123 MLVGNKTDLSDKRQVSTEEGERKA----KELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHH----HHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred EEEEECCcccccCcCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999998754221 11211111 123568999999999999999999987653
No 88
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=3.2e-23 Score=174.86 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=85.7
Q ss_pred eEEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318 162 IETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT 239 (313)
Q Consensus 162 ~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~ 239 (313)
....+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.. ....+.
T Consensus 71 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~-~~~~~~ 139 (199)
T 3l0i_B 71 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEIDR-YASENV 139 (199)
T ss_dssp EEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC----------SHHHHHHHHHHHHHHS-CC-CCS
T ss_pred EEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHH-hccCCC
Confidence 334445544 689999999999999999999999999999999998 6788888787777643 334579
Q ss_pred cEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 240 SIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 240 piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|++||+||+|+..++.........+. ...++.++++||++|.||.++|++|.+.+.
T Consensus 140 p~ilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 140 NKLLVGNKCDLTTKKVVDYTTAKEFA---DSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp EEEEC-CCSSCC--CCCCSCC-CHHH---HTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred CEEEEEECccCCccccCCHHHHHHHH---HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999998754332222222222 224567899999999999999999987664
No 89
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.87 E-value=4.5e-22 Score=165.57 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=85.2
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++||+||+
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 121 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 121 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcc
Confidence 4789999999999999999999999999999999998 67777763 444444322 2478999999999
Q ss_pred Cccccc-------------ccCCcccccCcCCCCCCCeEEEEeecc-cCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEK-------------ITKSPLTVCFPEYTDQKEIYTHFTCAT-DTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k-------------~~~~~l~~~f~~~~~~~~~~~~~tSA~-~~~~v~~~f~~i~~~i~~ 299 (313)
|+..+. +...+.......+ ..+.+++|||+ ++.||.++|+++.+.++.
T Consensus 122 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQI---GAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH---TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred hhhcchhhHhhhhhcccCCCCHHHHHHHHHHc---CCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 987521 1111111111111 12578999998 689999999999988763
No 90
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=5.8e-22 Score=168.35 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=92.8
Q ss_pred EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
...+.+++ +.+.+||++|++.++..|..++.+++++|+|+|+++ ..++.+...++..+... ...+.|
T Consensus 59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p 127 (213)
T 3cph_A 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD----------ERTFTNIKQWFKTVNEH-ANDEAQ 127 (213)
T ss_dssp EEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-TTTCSE
T ss_pred EEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCC
Confidence 34455555 789999999999999999999999999999999998 56666666676666542 224689
Q ss_pred EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
++||+||+|+............... ..++.++++||++|.||.++|++|.+.+.++
T Consensus 128 iilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 128 LLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp EEEEEECTTCSSCCSCHHHHHHHHH----HHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCcccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999998433222222222111 1345789999999999999999999988765
No 91
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.87 E-value=3.4e-22 Score=170.01 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=85.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.+.. .|+..+... ..+.|++||+||+
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 123 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------KASYENVLKKWMPELRRF--APNVPIVLVGTKL 123 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEECH
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCH
Confidence 3689999999999999999999999999999999998 67777776 455555332 2378999999999
Q ss_pred Ccccccc---------cCCcccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKI---------TKSPLTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~---------~~~~l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..+.. ...+...... ..+ ..+++|||++|.||.++|++|.+.+.+.
T Consensus 124 Dl~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 124 DLRDDKGYLADHTNVITSTQGEELRK----QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHTCHHHHHTCSSCCCHHHHHHHHH----HHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HhhhCccccccccCCCCHHHHHHHHH----HcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 9875421 1111111111 123 3789999999999999999999988754
No 92
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=2.5e-22 Score=172.13 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=92.3
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
+++.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ..++|++||+||+
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 129 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS----------RVTYKNVPNWHRDLVRV--CENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH--STTCCEEEEEECT
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECC
Confidence 45789999999999999999999999999999999998 67777777777777553 2478999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..+.... .... +. ...++.+++|||++|.||.++|++|.+.+...
T Consensus 130 Dl~~~~~~~-~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 130 DIKDRKVKA-KSIV-FH---RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TSSSCSSCG-GGCC-HH---HHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred ccccccccH-HHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 987643322 1111 11 22457899999999999999999999988754
No 93
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=2.9e-22 Score=168.91 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=85.0
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|++||+||+|
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~D 144 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC----------EKSFLNIREWVDMIEDA-AHETVPIMLVGNKAD 144 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-C---CCEEEEEECGG
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence 3679999999999999999999999999999999998 56666666666655332 224689999999999
Q ss_pred cccccc------cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 250 LFQEKI------TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 250 l~~~k~------~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+..... ........+. ...++.++++||++|.||.++|.+|.+.+.
T Consensus 145 l~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 145 IRDTAATEGQKCVPGHFGEKLA---MTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp GHHHHHHTTCCCCCHHHHHHHH---HHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccccccccccccCHHHHHHHH---HHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 864210 0111111111 123568899999999999999999998775
No 94
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.86 E-value=4.2e-22 Score=164.78 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=82.3
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+.+++||++|++.++..|..++++++++++|+|+++ ..++++.. .|+..+... ..+.|+++|+||
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 121 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIVLVGTK 121 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEEC
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEec
Confidence 34678899999999999999999999999999999998 67777766 355544332 237899999999
Q ss_pred CCccccccc-----------CCcccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 248 NDLFQEKIT-----------KSPLTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 248 ~Dl~~~k~~-----------~~~l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+|+..+... ..+... +. ...+ ..+++|||++|.||.++|+++.+.++
T Consensus 122 ~Dl~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 122 LDLRDDKQFFIDHPGAVPITTVQGEE-LK---KLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHTCHHHHHHC--CCCCCHHHHHH-HH---HHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred hhhhcCcccccccccCCCCCHHHHHH-HH---HHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 998654221 111111 11 1123 37899999999999999999998764
No 95
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=167.67 Aligned_cols=116 Identities=15% Similarity=0.222 Sum_probs=73.1
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++||+||+
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 148 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS----------PNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKT 148 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSCCEEEEEECG
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 3689999999999999999999999999999999998 67777776 455554332 2468999999999
Q ss_pred Cccccccc-------------CCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 249 DLFQEKIT-------------KSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 249 Dl~~~k~~-------------~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
|+..+... ..+... +. ...++ .+++|||++|.||.++|++|.+.+++..
T Consensus 149 Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 149 DLRKDKSLVNKLRRNGLEPVTYHRGQE-MA---RSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp GGGSCHHHHHHHHHTTCCCCCHHHHHH-HH---HHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred hhhccchhhhhhcccccCcccHHHHHH-HH---HhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 98764210 011111 11 11244 7899999999999999999999987654
No 96
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.86 E-value=5e-22 Score=168.38 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=83.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... . .+.|++||+||+
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~ 144 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH-C-PNTPIILVGTKL 144 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-C-SSCCEEEEEECH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-C-CCCCEEEEEech
Confidence 3567799999999999999999999999999999998 77777776 455444332 2 578999999999
Q ss_pred Cccccccc-------------CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT-------------KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 249 Dl~~~k~~-------------~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
|+..+... ..+.......+ ....++++||++|.||.++|++|.+.+
T Consensus 145 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI---GAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT---TCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hhccchhhhhhhhccccccccHHHHHHHHHhc---CCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 98754211 00111111111 123589999999999999999998754
No 97
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.86 E-value=6.4e-22 Score=160.49 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=89.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.+.+.+||++|++.++..|..++..++++++|+|+++ ..++.+...++..+.......+.|+++++||+|
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D 119 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence 3678999999999999999999999999999999998 677777777777765543335789999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+...........+.. ...++.++++||++|.|+.++|+++.+.+.
T Consensus 120 l~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 120 LAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CSCCCSCHHHHHHHH----HHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred hhhcccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 876322222222211 113467899999999999999999998875
No 98
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=5.1e-22 Score=169.64 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=87.5
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+.+|||+|++.++..|..++.+++++|+|+|+++ ..++.+...|+..+... ...+.|++||+||+|+
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS----------RITCQNLARWVKEFQAV-VGNEAPIVVCANKIDI 129 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCC
Confidence 679999999999999999999999999999999998 56666665555555432 2245899999999998
Q ss_pred ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.............+. ...++.++++||++|.||.++|++|.+.+...
T Consensus 130 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 130 KNRQKISKKLVMEVL---KGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp C----CCHHHHHHHT---TTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred ccccccCHHHHHHHH---HHcCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 764222212122222 33567899999999999999999999988754
No 99
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=2e-21 Score=161.08 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=85.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..+.|+++|+||+
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 119 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTKL 119 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTSCEEEEEECH
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcc
Confidence 4678899999999999999999999999999999998 67777776 455555432 2378999999999
Q ss_pred Cccccccc-------------CCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT-------------KSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k~~-------------~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|+...... ..+.. .+. ...+. .++++||++|.|+.++|+++.+.+..
T Consensus 120 Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 120 DLRDDKDTIEKLKEKKLTPITYPQGL-AMA---KEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHH-HHH---HHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cccccchhhhhhcccccccCCHHHHH-HHH---HhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 98653210 00111 111 11233 78999999999999999999988754
No 100
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.86 E-value=4e-21 Score=161.36 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=85.7
Q ss_pred ceeeeEecCCCcc-ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRS-ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~-~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+.+.+||++|+.. ++.++..|++.++++|+|+|+++ ..++.....|+..+.......++|++|++||+|
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~D 125 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKSD 125 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCeEEEEEechh
Confidence 5678999999887 67788889999999999999998 788888777777665432335789999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+...+.........+. ...++.+++|||++|.||.++|+++.+.+...
T Consensus 126 l~~~r~v~~~~~~~~a---~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 126 LVRXREVSVSEGRAXA---VVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp CGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHH---HHhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 8653221111111121 11346789999999999999999999988644
No 101
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.6e-22 Score=162.09 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=85.8
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~~~~piilv~NK~ 248 (313)
...+.+||++|++.++..|..++.+++++|+|+|+++ ..++++...++..+... ....+.|+++|+||+
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~ 119 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS----------RQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcc
Confidence 3679999999999999999999999999999999998 66666666666655432 223578999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+..++.........+. ...++.++++||++|.|+.++|++|.+.+.
T Consensus 120 Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 120 DESPSREVQSSEAEALA---RTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp GGGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ccccccccCHHHHHHHH---HHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 98654221111111111 123567899999999999999999987653
No 102
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.86 E-value=2e-21 Score=164.17 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=84.2
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+... |...+.. ...+.|+++|+||+
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~ 139 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH--FCPNVPIILVGNKK 139 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH--HSTTCCEEEEEECG
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH--hCCCCCEEEEEecH
Confidence 3689999999999999999999999999999999998 677777643 4443322 12478999999999
Q ss_pred CcccccccCC-------------cccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKITKS-------------PLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~~~~-------------~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+..+..... +..... ...+. .++++||++|.||.++|++|.+.++
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMA----NRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp GGTTCHHHHHHHHTTTCCCCCHHHHHHHH----HHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhhcCccchhhhcccccCcCCHHHHHHHH----HhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9875421110 111111 11233 7899999999999999999998775
No 103
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4.7e-21 Score=162.55 Aligned_cols=118 Identities=15% Similarity=0.254 Sum_probs=85.3
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+.. ...+.|+++|+||+|
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~D 140 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS----------PDSLENIPEKWVPEVKH--FCPNVPIILVANKKD 140 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC----------HHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGG
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchh
Confidence 689999999999999999999999999999999998 66777763 34444432 124789999999999
Q ss_pred cccccccCCccccc----C-----cCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 250 LFQEKITKSPLTVC----F-----PEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 250 l~~~k~~~~~l~~~----f-----~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+..+......+... . ..+....+. .++++||++|.||.++|++|.+.+++.
T Consensus 141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred hhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 87542111100000 0 000011233 789999999999999999999988754
No 104
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.85 E-value=4.7e-22 Score=165.66 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=84.5
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCccccccccccc-ccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEM-NRMIESMKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~-~~l~e~~~~~~~~~~~~~~~~~piilv~NK 247 (313)
+.+.+.+||++|++.++.+|..|+++++++++|+|+++ . .++.....|+..+... ..++|++||+||
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~s~~~~~~~~~~~~~~--~~~~piilv~nK 121 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK----------GQAEVDAMKPWLFNIKAR--ASSSPVILVGTH 121 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG----------CHHHHHTHHHHHHHHHHH--CTTCEEEEEEEC
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc----------chhHHHHHHHHHHHHHhh--CCCCcEEEEEEC
Confidence 46789999999999999999999999999999999997 3 3456666666665432 146899999999
Q ss_pred CCcccccccC---CcccccCcCCCCCCCe----EEEEeecccCc-CHHHHHHHHHHHHHH
Q psy8318 248 NDLFQEKITK---SPLTVCFPEYTDQKEI----YTHFTCATDTS-NIQFVFDAVTDVIIK 299 (313)
Q Consensus 248 ~Dl~~~k~~~---~~l~~~f~~~~~~~~~----~~~~tSA~~~~-~v~~~f~~i~~~i~~ 299 (313)
+|+..+.... ......+. ...++ .++++||+++. ++.++++.|.+.+.+
T Consensus 122 ~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 122 LDVSDEKQRKACMSKITKELL---NKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp GGGCCHHHHHHHHHHHHHHTT---TCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCcccchhhHHHHHHHHHHHH---HhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 9987543211 11112222 11233 38999999996 999999998887754
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.85 E-value=6.7e-21 Score=156.92 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=88.6
Q ss_pred EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL 243 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil 243 (313)
..+.+++..+.+|||+|++.++..|..++..++++|+|+|+++ ....++...+..+.. .+.|+++
T Consensus 48 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-----------~~~~~~~~~l~~~~~----~~~p~il 112 (178)
T 2lkc_A 48 YQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-----------GVMPQTVEAINHAKA----ANVPIIV 112 (178)
T ss_dssp CEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC-----------CCCHHHHHHHHHHGG----GSCCEEE
T ss_pred EEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHh----CCCCEEE
Confidence 3456677889999999999999999999999999999999886 233445555554432 3689999
Q ss_pred EeecCCcccccccCCcccccC---cCCCCC--CCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318 244 FLNKNDLFQEKITKSPLTVCF---PEYTDQ--KEIYTHFTCATDTSNIQFVFDAVTDVIIKANL 302 (313)
Q Consensus 244 v~NK~Dl~~~k~~~~~l~~~f---~~~~~~--~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~ 302 (313)
|+||+|+.... ...+...+ ..+... ..+.+++|||++|.||.++|++|.+.+....+
T Consensus 113 v~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 113 AINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp EEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred EEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 99999987531 01111111 111111 23689999999999999999999998876544
No 106
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7e-22 Score=165.93 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=87.7
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCCCCCcEEEEeecC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWFMDTSIILFLNKN 248 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~~~~piilv~NK~ 248 (313)
.+.+.+|||+|++.++..|..++.+++++|+|+|+++ ..++.+...++..+... ....+.|++||+||+
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~ 124 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS----------KQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECT
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 4689999999999999999999999999999999998 56666665555544332 113468999999999
Q ss_pred CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
|+..+........... ...++.++++||++|.||.++|++|.+.+..+
T Consensus 125 Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 125 DETQREVDTREAQAVA----QEWKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TCSSCSSCHHHHHHHH----HHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred cCCccccCHHHHHHHH----HHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 9875322222221111 12356789999999999999999999877544
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=3.3e-21 Score=162.10 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=82.6
Q ss_pred cCceeeeEecCCCcccccc-c--cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318 169 KDLHFKMFDVGGQRSERKK-W--IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL 245 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~-w--~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~ 245 (313)
+.+.+++||++|++.++.. | ..+|++++++|+|+|+++- ....+.....++..+.. ...++|++||+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~l~~~~~--~~~~~piilv~ 136 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD--------YMEALTRLHITVSKAYK--VNPDMNFEVFI 136 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC--------CHHHHHHHHHHHHHHHH--HCTTCEEEEEE
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc--------hHHHHHHHHHHHHHHHh--cCCCCcEEEEE
Confidence 4589999999999997655 5 7999999999999999970 01444555555555432 23478999999
Q ss_pred ecCCccccc-------ccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 246 NKNDLFQEK-------ITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 246 NK~Dl~~~k-------~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
||+|+..+. .......+.+.. +....++.+++|||++ .||.++|.++.+.+
T Consensus 137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred eccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 999975421 111111111211 1024578899999999 99999999998865
No 108
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=3.9e-22 Score=168.72 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=84.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+.. . ..+.|++||+||
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK 143 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRH-H-CPNTPIILVGTK 143 (204)
Confidence 34678899999999999999999999999999999998 66676665 44444422 1 237899999999
Q ss_pred CCcccccccCCcc---------cccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318 248 NDLFQEKITKSPL---------TVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 248 ~Dl~~~k~~~~~l---------~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+|+..+......+ ......+....++ .+++|||++|.||.++|++|.+.+
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9987542111000 0001111122344 688999999999999999998765
No 109
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.81 E-value=1.9e-19 Score=151.71 Aligned_cols=123 Identities=15% Similarity=0.214 Sum_probs=90.2
Q ss_pred EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
..+.+.+ +.+.+||++|++.++..|..++++++++++|+|+++ ..++.+...|+..+... ...+.|+
T Consensus 45 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~i 113 (199)
T 2f9l_A 45 RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIVI 113 (199)
T ss_dssp EEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCeE
Confidence 3455544 678899999999999999999999999999999998 55666666666555332 2246899
Q ss_pred EEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 242 ILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 242 ilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
++++||+|+...+.........+. ...++.++.|||+++.|+.++|++|.+.+.+.
T Consensus 114 ~~v~nK~Dl~~~~~~~~~~a~~l~---~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 114 MLVGNKSDLRHLRAVPTDEARAFA---EKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccCcCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999998653211111111121 12356788899999999999999999988764
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.81 E-value=1.1e-19 Score=148.61 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=79.1
Q ss_pred EEEEecCceeeeEecCCCccccc------ccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERK------KWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
..+.+++..+++|||+|++.++. ++..|+. +++++++|+|.++ ..+. ..++..+..
T Consensus 43 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~---~~~~~~~~~--- 106 (165)
T 2wji_A 43 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA----------LERN---LYLTLQLME--- 106 (165)
T ss_dssp EEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC----------HHHH---HHHHHHHHH---
T ss_pred EEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc----------hhHh---HHHHHHHHh---
Confidence 34556678899999999988763 3466775 8999999999987 2222 334444433
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+.|+++|+||+|+..++....+. +.+. ...++.+++|||++|.||.++|+++.+.+
T Consensus 107 -~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~---~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 107 -MGANLLLALNKMDLAKSLGIEIDV-DKLE---KILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -TTCCEEEEEECHHHHHHTTCCCCH-HHHH---HHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred -cCCCEEEEEEchHhccccChhhHH-HHHH---HHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 268999999999986542211121 1121 11246789999999999999999998765
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=1.9e-19 Score=145.61 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=79.6
Q ss_pred eEEEEEecCceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 162 IETHFTFKDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 162 ~~~~~~~~~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
....+...+..+.+||++|+.. .+..|..+++.++++|+|+|.++ ..+ +...++..++..
T Consensus 40 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~--~~~~~~~~~~~~- 106 (161)
T 2dyk_A 40 KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA----------ELT--QADYEVAEYLRR- 106 (161)
T ss_dssp EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS----------CCC--HHHHHHHHHHHH-
T ss_pred eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC----------ccc--HhHHHHHHHHHh-
Confidence 3344556677899999999987 45677788999999999999997 111 122233333332
Q ss_pred CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318 235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+.|+++|+||+|+..+. ....+.. .+ ++ .++++||++|.|+.++|+++.+.+
T Consensus 107 --~~~p~ilv~nK~Dl~~~~---~~~~~~~-~~----~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 107 --KGKPVILVATKVDDPKHE---LYLGPLY-GL----GFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp --HTCCEEEEEECCCSGGGG---GGCGGGG-GG----SSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred --cCCCEEEEEECcccccch---HhHHHHH-hC----CCCCeEEEecccCCChHHHHHHHHHhC
Confidence 368999999999987642 1222211 22 33 578999999999999999998753
No 112
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.80 E-value=1.9e-19 Score=155.03 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=85.5
Q ss_pred ceeEEEEEecCceeeeEecCCCcc----cc-----ccccccccCCcEEEEEEecCCccccccccccccc--HHHHHHHHH
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRS----ER-----KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNR--MIESMKLFD 228 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~----~r-----~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~--l~e~~~~~~ 228 (313)
.+....+..++..+.+|||+|+.. .+ ..+..++..++++|||+|+++ ..+ ......++.
T Consensus 65 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~ 134 (228)
T 2qu8_A 65 NLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISE----------QCGLTIKEQINLFY 134 (228)
T ss_dssp CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTC----------TTSSCHHHHHHHHH
T ss_pred eeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccc----------ccCcchHHHHHHHH
Confidence 444445566778999999999932 11 223456788999999999997 333 244456666
Q ss_pred HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCC--eEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKE--IYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~--~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
.+... ..+.|+++|+||+|+.............+..+....+ +.+++|||++|.||.++|++|.+.+.+..
T Consensus 135 ~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 135 SIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp HHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 66432 3478999999999987542211111111111101122 78999999999999999999999887553
No 113
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.80 E-value=2.7e-19 Score=162.08 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=84.2
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|+++|+||+|
T Consensus 203 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D 270 (332)
T 2wkq_A 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFHHVRAKWYPEVRHH--CPNTPIILVGTKLD 270 (332)
T ss_dssp EEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHH
T ss_pred EEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchh
Confidence 567799999999999999999999999999999998 67777766 344444332 13789999999999
Q ss_pred cccccc-------------cCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 250 LFQEKI-------------TKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 250 l~~~k~-------------~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+..... ...+... +. ...++ .+++|||++|.||.++|++|.+.++.
T Consensus 271 l~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 271 LRDDKDTIEKLKEKKLTPITYPQGLA-MA---KEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHTCHHHHHHHHHTTCCCCCHHHHHH-HH---HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cccccchhhhccccccccccHHHHHH-HH---HHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 865311 0001111 11 11233 78999999999999999999988753
No 114
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.79 E-value=9.6e-20 Score=164.16 Aligned_cols=129 Identities=19% Similarity=0.288 Sum_probs=93.1
Q ss_pred eeecceeEEEEEe-cCceeeeEecCCCccc-----cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHH---
Q psy8318 156 VKTTGIIETHFTF-KDLHFKMFDVGGQRSE-----RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL--- 226 (313)
Q Consensus 156 ~~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~-----r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~--- 226 (313)
.+|+|.....+.+ +++.+.+||++|++.+ +..|..++++++++|+|+|+++ ..++++...|
T Consensus 36 ~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~----------~~s~~~l~~~~~~ 105 (307)
T 3r7w_A 36 GATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES----------TEVLKDIEIFAKA 105 (307)
T ss_dssp CCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTC----------SCHHHHHHHHHHH
T ss_pred CCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHH
Confidence 4677777777666 6789999999999988 7899999999999999999998 5566555443
Q ss_pred HHHHHhCCCCCCCcEEEEeecCCccc--cc-----ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 227 FDSICNSKWFMDTSIILFLNKNDLFQ--EK-----ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 227 ~~~~~~~~~~~~~piilv~NK~Dl~~--~k-----~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+..+... ..++|++|++||+|+.. ++ ....+..+....+ .-..+.+++|||++ .++.++|..+.+.++
T Consensus 106 l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~-g~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 106 LKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF-GFPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp HHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT-TCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred HHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc-CCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 4443321 34689999999999876 22 1112222222222 11147899999999 899999999886543
No 115
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.79 E-value=4.6e-20 Score=161.89 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=85.2
Q ss_pred cCceeeeEe-----------------------cCCCcccccccccccc---------------------CCcEEEEEEec
Q psy8318 169 KDLHFKMFD-----------------------VGGQRSERKKWIHCFE---------------------GVTAIIFCVAL 204 (313)
Q Consensus 169 ~~~~~~i~D-----------------------~~Gq~~~r~~w~~~~~---------------------~~~~iifv~dl 204 (313)
..+.+++|| ++|++.++.+|..+|. +++++|+|+|+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 457899999 8999999999999998 89999999999
Q ss_pred CCccccccccccc--ccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeeccc
Q psy8318 205 SGYDSVLAEDEEM--NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATD 282 (313)
Q Consensus 205 s~~d~~~~e~~~~--~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~ 282 (313)
++ . .+++....|+..+.......++|++||+||+|+..++.. .+..+.... ..++.+++|||++
T Consensus 173 t~----------~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~---~~~~~~~e~SAk~ 238 (255)
T 3c5h_A 173 SR----------GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-RDAHTFALS---KKNLQVVETSARS 238 (255)
T ss_dssp BC--------------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-HHHHHHHHT---SSSCCEEECBTTT
T ss_pred CC----------CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-HHHHHHHHh---cCCCeEEEEECCC
Confidence 98 5 677777777777654322346899999999998653221 121111111 1356789999999
Q ss_pred CcCHHHHHHHHHHHH
Q psy8318 283 TSNIQFVFDAVTDVI 297 (313)
Q Consensus 283 ~~~v~~~f~~i~~~i 297 (313)
|.||.++|++|.+.+
T Consensus 239 g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLI 253 (255)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=4.6e-19 Score=146.04 Aligned_cols=116 Identities=12% Similarity=0.235 Sum_probs=79.9
Q ss_pred ceeEEEEEecCceeeeEecCCCccccc---------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERK---------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~---------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
.+....+.+++..+.+|||+|++.... .| .++++++++++|+|+++ ..++. ...++..+
T Consensus 41 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~----------~~s~~-~~~~~~~~ 108 (172)
T 2gj8_A 41 DVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTT----------TDAVD-PAEIWPEF 108 (172)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTT----------CCCCS-HHHHCHHH
T ss_pred ceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCC----------CCCHH-HHHHHHHH
Confidence 334445666777899999999965321 22 36899999999999997 23322 23455444
Q ss_pred HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
... ...++|+++|+||+|+..+.. +.. ....+.+++|||++|.||.++|++|.+.+.
T Consensus 109 ~~~-~~~~~p~ilv~NK~Dl~~~~~---~~~-------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 109 IAR-LPAKLPITVVRNKADITGETL---GMS-------EVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp HHH-SCTTCCEEEEEECHHHHCCCC---EEE-------EETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred HHh-cccCCCEEEEEECccCCcchh---hhh-------hccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 332 234689999999999864311 111 113567899999999999999999988664
No 117
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=1.8e-18 Score=144.88 Aligned_cols=121 Identities=14% Similarity=0.197 Sum_probs=86.8
Q ss_pred EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318 163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240 (313)
Q Consensus 163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p 240 (313)
...+.+.+ +.+++||++|++.++..|..++++++++++|+|+++ ..++++...|+..+... ...+.|
T Consensus 68 ~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~ 136 (191)
T 1oix_A 68 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIV 136 (191)
T ss_dssp EEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCE
T ss_pred EEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCc
Confidence 34455554 566789999999999999999999999999999997 45555555555554321 224689
Q ss_pred EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+++++||+|+...+.........+. ...++.++.|||+++.|+.++|++|.+.+
T Consensus 137 i~~v~nK~Dl~~~~~~~~~~a~~l~---~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 137 IMLVGNKSDLRHLRAVPTDEARAFA---EKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEECcccccccccCHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999998753211111112221 12356788899999999999999998765
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=6.8e-19 Score=146.34 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=84.4
Q ss_pred eEEEEEecCceeeeEecCCCcccc------cccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 162 IETHFTFKDLHFKMFDVGGQRSER------KKWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 162 ~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
....+.+++..+.+|||+|+..++ ..|..|+. +++++++|+|.+++ +....++..+..
T Consensus 45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~~- 110 (188)
T 2wjg_A 45 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL-------------ERNLYLTLQLME- 110 (188)
T ss_dssp EEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH-------------HHHHHHHHHHHT-
T ss_pred eEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH-------------HHHHHHHHHHHh-
Confidence 344566678899999999998875 45777775 59999999998862 223445555433
Q ss_pred CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 234 KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
.+.|+++++||+|+..+......... +. ...++.++++||+++.||.++|+++.+.+....
T Consensus 111 ---~~~piilv~nK~Dl~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 111 ---MGANLLLALNKMDLAKSLGIEIDVDK-LE---KILGVKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp ---TTCCEEEEEECHHHHHHTTCCCCHHH-HH---HHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred ---cCCCEEEEEEhhhccccccchHHHHH-HH---HHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 46899999999998754322222221 11 113467899999999999999999999876543
No 119
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.77 E-value=7.8e-19 Score=146.85 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=78.2
Q ss_pred ceeeeEecCC----------CccccccccccccCC---cEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318 171 LHFKMFDVGG----------QRSERKKWIHCFEGV---TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237 (313)
Q Consensus 171 ~~~~i~D~~G----------q~~~r~~w~~~~~~~---~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~ 237 (313)
..+.+|||+| ++.++..|..+++++ +++++|+|+++ ..+..+ ..++..+ .. .
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~-~~~~~~~-~~---~ 133 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH----------APSNDD-VQMYEFL-KY---Y 133 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HHHHHHH-HH---T
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC----------CCCHHH-HHHHHHH-HH---c
Confidence 4799999999 788888888888777 99999999987 333332 2222222 21 4
Q ss_pred CCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 238 DTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+.|+++|+||+|+....... ..+.+.+. ....+.++++||++|.||.++|++|.+.+
T Consensus 134 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 134 GIPVIVIATKADKIPKGKWDKHAKVVRQTLN---IDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHT---CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHHHHc---ccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 68999999999987542111 22222232 22467899999999999999999998865
No 120
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.75 E-value=2.3e-19 Score=149.25 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=73.4
Q ss_pred eeeeEecCC-----------CccccccccccccC-CcEEEEEEecCCcccccccccccccHHHHHHHHHH---------H
Q psy8318 172 HFKMFDVGG-----------QRSERKKWIHCFEG-VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS---------I 230 (313)
Q Consensus 172 ~~~i~D~~G-----------q~~~r~~w~~~~~~-~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~---------~ 230 (313)
.+.+|||+| ++.++..|..|+.+ ++++++|+++.+ ..++.+....|.. +
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d----------~~s~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVD----------GKAAPEIIKRWEKRGEIPIDVEF 114 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEE----------TTHHHHHHHHHHHTTCCCHHHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEc----------chhhhhHHHhhhccCccHHHHHH
Confidence 789999999 77888888888876 665555555555 3333333111110 1
Q ss_pred HhCCCCCCCcEEEEeecCCcccccc-cCCcccccCc-CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKI-TKSPLTVCFP-EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~-~~~~l~~~f~-~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~ 301 (313)
.......+.|+++|+||+|+..... ....+...+. .+ ......+++|||++|.||.++|+++.+.+....
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 1111114689999999999876430 0111211111 01 001235799999999999999999999886543
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.74 E-value=1.6e-18 Score=144.64 Aligned_cols=111 Identities=13% Similarity=0.144 Sum_probs=76.9
Q ss_pred CceeeeEecCC----------CccccccccccccCC---cEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 170 DLHFKMFDVGG----------QRSERKKWIHCFEGV---TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 170 ~~~~~i~D~~G----------q~~~r~~w~~~~~~~---~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
+..+.+|||+| ++.++..|..+++++ +++++|+|.++.. .........++..
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~--------~~~~~~~~~~~~~------- 131 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP--------QDSDLMMVEWMKS------- 131 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHH-------
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC--------CHHHHHHHHHHHH-------
Confidence 56789999999 777888888888766 8999999988611 1111122222222
Q ss_pred CCCcEEEEeecCCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.+.|+++|+||+|+..+... ...+...+..+ ..+.++++||++|.||.++|++|.+.+.
T Consensus 132 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 132 LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY---GEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS---CCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc---CCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 26899999999998643211 12233333322 3467999999999999999999998774
No 122
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.73 E-value=9.9e-19 Score=146.00 Aligned_cols=112 Identities=9% Similarity=-0.002 Sum_probs=80.2
Q ss_pred ecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH---HHHHhCCC-CCCCcEEEEeecC-Ccc
Q psy8318 177 DVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF---DSICNSKW-FMDTSIILFLNKN-DLF 251 (313)
Q Consensus 177 D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~---~~~~~~~~-~~~~piilv~NK~-Dl~ 251 (313)
+.|||.+.|.+|.+||++++++|||||++| ..+++ +...+ ..+++... +.++|++|++||. |+.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD----------~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBT----------TCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEecccc----------HhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 678999999999999999999999999998 45543 66666 44455543 5789999999995 786
Q ss_pred cccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 252 QEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 252 ~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.+ +...++.+.+..-.-++.|+++.|||++|+|+.+.++|+.+.+..+
T Consensus 177 ~A-ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 177 KR-MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp CB-CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CC-CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 64 5555666655332224789999999999999999999999877544
No 123
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.72 E-value=6.9e-18 Score=163.16 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=79.8
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
++..+.+||++|++.++..+..++++++++|+|+|+++ ...+..+...+.... .+.|++||+||+
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~----------~~~~~~~~~~l~~~~-----~~~pvilV~NK~ 160 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT----------DSNKHYWLRHIEKYG-----GKSPVIVVMNKI 160 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG----------GGGHHHHHHHHHHHS-----SSCCEEEEECCT
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC----------chhHHHHHHHHHHhC-----CCCCEEEEEECC
Confidence 35889999999999999999999999999999999987 344444444443331 368999999999
Q ss_pred Ccccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|+..++. ....+.+.++. .++.++++||++|.||.++|+++.+.+..
T Consensus 161 Dl~~~~~v~~~~~~~~~~~----~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 161 DENPSYNIEQKKINERFPA----IENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TTCTTCCCCHHHHHHHCGG----GTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred CcccccccCHHHHHHHHHh----cCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 9875422 22233333332 34568999999999999999999988754
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.72 E-value=1.3e-17 Score=146.54 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=84.0
Q ss_pred ceeEEEEEecCceeeeEecCCCccccccc------cccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERKKW------IHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w------~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
......+..++..+.+||++|+..++..| ..|+ .+++++|+|+|.++. .+ ...++..+.
T Consensus 41 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~----------~~---~~~~~~~l~ 107 (258)
T 3a1s_A 41 EKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP----------EQ---SLYLLLEIL 107 (258)
T ss_dssp EEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC----------HH---HHHHHHHHH
T ss_pred EEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch----------hh---HHHHHHHHH
Confidence 33444566678899999999999887655 5565 589999999999972 22 234555554
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
. .+.|+++++||+|+..++-...... .+. ...++.+++|||++|.|+.++|+++.+.+.
T Consensus 108 ~----~~~pvilv~NK~Dl~~~~~i~~~~~-~l~---~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 108 E----MEKKVILAMTAIDEAKKTGMKIDRY-ELQ---KHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp T----TTCCEEEEEECHHHHHHTTCCBCHH-HHH---HHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred h----cCCCEEEEEECcCCCCccchHHHHH-HHH---HHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 3 2689999999999865422211211 121 113567999999999999999999988764
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.71 E-value=1.7e-17 Score=146.71 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=77.5
Q ss_pred CceeeeEecCCCcccc------cccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318 170 DLHFKMFDVGGQRSER------KKWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r------~~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi 241 (313)
+..+.+|||+|+..++ .++..|+. +++++|+|+|.++ ..+ ...+...+.. .+.|+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~----------~e~---~~~~~~~l~~----~~~p~ 110 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN----------LER---NLYLTTQLIE----TGIPV 110 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG----------HHH---HHHHHHHHHH----TCSCE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc----------hHh---HHHHHHHHHh----cCCCE
Confidence 6789999999998876 46677775 6999999999986 222 2344444443 36899
Q ss_pred EEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 242 ILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 242 ilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
++++||+|+..++...... ..+. ...++.+++|||++|.||.++|+++.+.+
T Consensus 111 ilv~NK~Dl~~~~~~~~~~-~~l~---~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 111 TIALNMIDVLDGQGKKINV-DKLS---YHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp EEEEECHHHHHHTTCCCCH-HHHH---HHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred EEEEEChhhCCcCCcHHHH-HHHH---HHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999986543222221 1122 11356789999999999999999998754
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=1.4e-18 Score=148.10 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=63.1
Q ss_pred cCceeeeEecCCCccccccccccccC----CcEEEEEEecC-CcccccccccccccHHHHHHHHHHHHhCC---CCCCCc
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEG----VTAIIFCVALS-GYDSVLAEDEEMNRMIESMKLFDSICNSK---WFMDTS 240 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~----~~~iifv~dls-~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---~~~~~p 240 (313)
....+.+||++|++.++..|..++.+ ++++|||+|++ + ..++.+...++..++... ...++|
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID 122 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC----------TTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCC----------hHHHHHHHHHHHHHHhcccccccCCCC
Confidence 56789999999999999999999987 89999999999 6 677788888888776542 225789
Q ss_pred EEEEeecCCcccc
Q psy8318 241 IILFLNKNDLFQE 253 (313)
Q Consensus 241 iilv~NK~Dl~~~ 253 (313)
+++|+||+|+..+
T Consensus 123 ~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 123 ILIACNKSELFTA 135 (218)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEEchHhccc
Confidence 9999999998653
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.69 E-value=1.2e-17 Score=142.77 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=77.0
Q ss_pred cCceeeeEecCCC----------ccccccccccccC---CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 169 KDLHFKMFDVGGQ----------RSERKKWIHCFEG---VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 169 ~~~~~~i~D~~Gq----------~~~r~~w~~~~~~---~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
++..+.+|||+|. +.++..+..|+.. ++++|||+|.++ .-. .....++..+ ..
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~l-~~-- 142 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR----------PLT-ELDRRMIEWF-AP-- 142 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCC-HHHHHHHHHH-GG--
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC----------CCC-HHHHHHHHHH-Hh--
Confidence 4688999999994 4445666677765 778999999986 111 2223333333 22
Q ss_pred CCCCcEEEEeecCCccccccc---CCcccccCcCC---CCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 236 FMDTSIILFLNKNDLFQEKIT---KSPLTVCFPEY---TDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~---~~~l~~~f~~~---~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.+.|+++|+||+|+...... ...+.+.+..+ .....+.++++||++|.||.++|++|.+.+...
T Consensus 143 -~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 143 -TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp -GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred -cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 46899999999998653221 11122222211 012567899999999999999999999887543
No 128
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.69 E-value=2.1e-17 Score=144.93 Aligned_cols=116 Identities=11% Similarity=0.063 Sum_probs=81.9
Q ss_pred ceeEEEEEecCceeeeEecCCCccccc----------cccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERK----------KWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~----------~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
......+.+++..+.+|||+|+..+.. .+..|+ .+++++|+|+|.++ ..+ ...+.
T Consensus 37 ~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~----------~~~---~~~l~ 103 (256)
T 3iby_A 37 EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH----------LER---HLYLT 103 (256)
T ss_dssp EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG----------HHH---HHHHH
T ss_pred EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC----------chh---HHHHH
Confidence 345556677888999999999987764 566677 89999999999996 222 23333
Q ss_pred HHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 228 DSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
..+.. .+.|+++++||+|+..++-....... +. ...++.++++||++|.|+.++|+++.+.
T Consensus 104 ~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~-l~---~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 104 SQLFE----LGKPVVVALNMMDIAEHRGISIDTEK-LE---SLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHTT----SCSCEEEEEECHHHHHHTTCEECHHH-HH---HHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHH----cCCCEEEEEEChhcCCcCCcHHHHHH-HH---HHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33322 26899999999998764321111111 11 1135679999999999999999999764
No 129
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.67 E-value=4.1e-17 Score=144.56 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=79.8
Q ss_pred eeEEEEEecCceeeeEecCCCccccc----------cccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHH
Q psy8318 161 IIETHFTFKDLHFKMFDVGGQRSERK----------KWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228 (313)
Q Consensus 161 ~~~~~~~~~~~~~~i~D~~Gq~~~r~----------~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~ 228 (313)
.....+...+..+.+|||+|+..+.. .+..|+ ++++++|+|+|.++ ..+......++.
T Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~----------~~~~~~~~~~l~ 109 (274)
T 3i8s_A 40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LERNLYLTLQLL 109 (274)
T ss_dssp EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG----------HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC----------hHHHHHHHHHHH
Confidence 44455666778999999999987762 344444 79999999999997 333333333332
Q ss_pred HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+. +.|+++++||+|+..+........ .+. ...++.++++||++|.|+.++|+++.+.+.
T Consensus 110 ~~-------~~p~ivv~NK~Dl~~~~~~~~~~~-~l~---~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 110 EL-------GIPCIVALNMLDIAEKQNIRIEID-ALS---ARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp HH-------TCCEEEEEECHHHHHHTTEEECHH-HHH---HHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred hc-------CCCEEEEEECccchhhhhHHHHHH-HHH---HhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 22 689999999999865422111111 111 113467999999999999999999887553
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.67 E-value=1.8e-16 Score=140.16 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=86.8
Q ss_pred ceeEEEEEecCceeeeEecCCCccccc------cccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERK------KWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
......+.+++..+.+||++|+..+.. .+..|+ .+++++++|+|.++ . .....++..+.
T Consensus 39 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~---~~~~~~~~~~~ 105 (271)
T 3k53_A 39 EKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC----------L---MRNLFLTLELF 105 (271)
T ss_dssp EEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG----------H---HHHHHHHHHHH
T ss_pred EeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc----------c---hhhHHHHHHHH
Confidence 344556677888899999999988776 677777 78999999999986 2 34455555555
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.. ...|+++++||+|+..++-...... .+. ...++.+++|||++|.|+.++|+++.+.+..
T Consensus 106 ~~---~~~p~ilv~NK~Dl~~~~~~~~~~~-~l~---~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 106 EM---EVKNIILVLNKFDLLKKKGAKIDIK-KMR---KELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp HT---TCCSEEEEEECHHHHHHHTCCCCHH-HHH---HHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred hc---CCCCEEEEEEChhcCcccccHHHHH-HHH---HHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 43 2389999999999875432222221 111 1135678999999999999999999987643
No 131
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.67 E-value=1.8e-16 Score=142.77 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=81.4
Q ss_pred EEEec-CceeeeEecCCCcccc----------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318 165 HFTFK-DLHFKMFDVGGQRSER----------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 165 ~~~~~-~~~~~i~D~~Gq~~~r----------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
.+..+ +.++.+|||+|+.... ..+..++.++|+++||+|.++ ..+..+...|++.+..
T Consensus 52 ~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~----------~~~~~~~~~~~~~l~~- 120 (308)
T 3iev_A 52 VKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE----------GWRPRDEEIYQNFIKP- 120 (308)
T ss_dssp EEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTT----------BSCHHHHHHHHHHTGG-
T ss_pred EEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCC----------CCCchhHHHHHHHHHh-
Confidence 34556 8899999999996544 667788999999999999997 4444443333444432
Q ss_pred CCCCCCcEEEEeecCCcc-cccccCC---cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 234 KWFMDTSIILFLNKNDLF-QEKITKS---PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~-~~k~~~~---~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.+.|+++|+||+|+. ....... .+.+.+. ....++++||++|.|+.++|+++.+.+.
T Consensus 121 ---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~-----~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 121 ---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP-----ELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT-----TCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc-----CCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 468999999999986 3221111 1222221 2246899999999999999999988663
No 132
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.6e-17 Score=145.25 Aligned_cols=112 Identities=9% Similarity=0.008 Sum_probs=84.1
Q ss_pred ecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHH---HHHhCCC-CCCCcEEEEeec-CCcc
Q psy8318 177 DVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD---SICNSKW-FMDTSIILFLNK-NDLF 251 (313)
Q Consensus 177 D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~---~~~~~~~-~~~~piilv~NK-~Dl~ 251 (313)
|+|||.+.|.+|.+||++++++|||||++| ..+++ +...+. .++++.. ..++|++|++|| +|+.
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsD----------reRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBT----------TCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCc----------HhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 579999999999999999999999999999 56654 555444 4454432 578999999997 6887
Q ss_pred cccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 252 QEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 252 ~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.+ +...++.+.+..-.-++.|+++.|||++|+|+.+.++|+.+.+..+
T Consensus 262 ~A-ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 262 KR-MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp CB-CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred CC-CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 64 5555666654332224789999999999999999999999887543
No 133
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.65 E-value=2.3e-16 Score=141.53 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=76.5
Q ss_pred EecCceeeeEecCCCcc--------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318 167 TFKDLHFKMFDVGGQRS--------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD 238 (313)
Q Consensus 167 ~~~~~~~~i~D~~Gq~~--------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~ 238 (313)
..++.++.+|||+|+.. +...+..+++++|+++||+|.++ ..... ..++...+... ..+
T Consensus 51 ~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~----------~~~~~--~~~i~~~l~~~-~~~ 117 (301)
T 1wf3_A 51 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH----------PPTPE--DELVARALKPL-VGK 117 (301)
T ss_dssp EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS----------CCCHH--HHHHHHHHGGG-TTT
T ss_pred EeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCC----------CCChH--HHHHHHHHHhh-cCC
Confidence 44678999999999876 34556678899999999999986 21211 23332223321 246
Q ss_pred CcEEEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 239 TSIILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.|+++|+||+|+..+.. ....+..+ + ....++++||++|.|+.++|+++.+.+
T Consensus 118 ~p~ilV~NK~Dl~~~~~~~~~~~~~~---~---~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 118 VPILLVGNKLDAAKYPEEAMKAYHEL---L---PEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp SCEEEEEECGGGCSSHHHHHHHHHHT---S---TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCEEEEEECcccCCchHHHHHHHHHh---c---CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 89999999999865321 11111111 1 223589999999999999999988754
No 134
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.64 E-value=2.4e-16 Score=149.64 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=72.7
Q ss_pred eeEEEEEecCceeeeEecCCCccccccc--------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 161 IIETHFTFKDLHFKMFDVGGQRSERKKW--------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 161 ~~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
+....+.+++..+.+|||+|++..+..| ..++++++++|+|+|.++... ...+.+...++..+
T Consensus 271 ~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~~~~~~l~~l-- 341 (476)
T 3gee_A 271 YIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL-------DDELTEIRELKAAH-- 341 (476)
T ss_dssp --CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS-------GGGHHHHHHHHHHC--
T ss_pred EEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc-------hhhhHHHHHHHHhc--
Confidence 3444566788899999999998766444 447899999999999997211 11122444444433
Q ss_pred CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.+.|+++|+||+|+....... . +.+.+. ....++++||++|.||.++|++|.+.+.
T Consensus 342 ----~~~piIvV~NK~Dl~~~~~~~--~-~~l~~~---~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 342 ----PAAKFLTVANKLDRAANADAL--I-RAIADG---TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ----TTSEEEEEEECTTSCTTTHHH--H-HHHHHH---HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ----CCCCEEEEEECcCCCCccchh--H-HHHHhc---CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 268999999999987542111 0 111110 0135789999999999999999999875
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.63 E-value=1.4e-16 Score=148.98 Aligned_cols=117 Identities=10% Similarity=0.116 Sum_probs=82.0
Q ss_pred ceeEEEEEecCc-eeeeEecCCCcccccc-------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 160 GIIETHFTFKDL-HFKMFDVGGQRSERKK-------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 160 g~~~~~~~~~~~-~~~i~D~~Gq~~~r~~-------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
......+.+.+. .+.+|||+|+..+... +..++.+++++|+|+|.+. .....++ +..+.
T Consensus 71 d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~~~~---l~~l~ 137 (423)
T 3qq5_A 71 DPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYEDDV---VNLFK 137 (423)
T ss_dssp CCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHHHHH---HHHHH
T ss_pred eeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHHHHH---HHHHH
Confidence 334445555554 8999999999877655 4458899999999999843 2333333 33332
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.. +.|+++|+||+|+..+... +..+.+. ...++.++++||++|.|+.++|++|.+.+.
T Consensus 138 ~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~---~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 138 EM----EIPFVVVVNKIDVLGEKAE--ELKGLYE---SRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp HT----TCCEEEECCCCTTTTCCCT--HHHHHSS---CCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred hc----CCCEEEEEeCcCCCCccHH--HHHHHHH---HHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 22 6899999999998765321 2222232 224567899999999999999999998774
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=6.8e-16 Score=146.65 Aligned_cols=116 Identities=13% Similarity=0.246 Sum_probs=81.4
Q ss_pred eeEEEEEecCceeeeEecCCCc-ccc--------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 161 IIETHFTFKDLHFKMFDVGGQR-SER--------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 161 ~~~~~~~~~~~~~~i~D~~Gq~-~~r--------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
+....+.+++..+.+|||+|++ ... ..+..+++.++++|+|+|+++ ..+.++ .++++.+
T Consensus 281 ~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~s~~~-~~il~~l- 348 (482)
T 1xzp_A 281 VISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS----------PLDEED-RKILERI- 348 (482)
T ss_dssp SCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS----------CCCHHH-HHHHHHH-
T ss_pred eEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCC----------CCCHHH-HHHHHHh-
Confidence 4445667788899999999997 443 234567899999999999987 333332 3344332
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+.|+++|+||+|+..+ ....++.+.++ ..+.++++||++|+|+.++|++|.+.+..
T Consensus 349 -----~~~piivV~NK~DL~~~-~~~~~~~~~~~-----~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 349 -----KNKRYLVVINKVDVVEK-INEEEIKNKLG-----TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp -----TTSSEEEEEEECSSCCC-CCHHHHHHHHT-----CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred -----cCCCEEEEEECcccccc-cCHHHHHHHhc-----CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 36799999999998653 22122222211 22457899999999999999999997663
No 137
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.6e-16 Score=130.42 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=62.8
Q ss_pred cCceeeeEecCCCccccccccccccC----CcEEEEEEecC-CcccccccccccccHHHHHHHHHHHHhCC---CCCCCc
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEG----VTAIIFCVALS-GYDSVLAEDEEMNRMIESMKLFDSICNSK---WFMDTS 240 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~----~~~iifv~dls-~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---~~~~~p 240 (313)
.+..+.+|||+|+..++..|..++.+ ++++|||+|++ + ..++.+...++..++... ...+.|
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC----------HHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC----------chhHHHHHHHHHHHHhhhhhccccCCC
Confidence 56789999999999999999999876 89999999999 6 677888888887776532 225789
Q ss_pred EEEEeecCCcccc
Q psy8318 241 IILFLNKNDLFQE 253 (313)
Q Consensus 241 iilv~NK~Dl~~~ 253 (313)
+++|+||+|+..+
T Consensus 159 ~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 159 ILIACNKSELFTA 171 (193)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEEchHhcCC
Confidence 9999999998653
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=1.2e-15 Score=144.00 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=80.2
Q ss_pred eeEEEEEecCceeeeEecCCCcc---------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 161 IIETHFTFKDLHFKMFDVGGQRS---------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 161 ~~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
.....+.+++..+++|||||++. ++..|..+++++|++|||+|.++ .... ....+..++
T Consensus 39 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~----------~~~~--~d~~i~~~l 106 (439)
T 1mky_A 39 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR----------GITK--EDESLADFL 106 (439)
T ss_dssp CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT----------CCCH--HHHHHHHHH
T ss_pred eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCH--HHHHHHHHH
Confidence 33445667788999999999764 35678889999999999999875 1111 112222333
Q ss_pred hCCCCCCCcEEEEeecCCcccccccCCcc-cccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKITKSPL-TVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l-~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.. .++|++|++||+|+... . .... .+ |.. .++ .++++||++|.|+.++|+++.+.+..
T Consensus 107 ~~---~~~p~ilv~NK~D~~~~-~-~~~~~~~-~~~----lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 107 RK---STVDTILVANKAENLRE-F-EREVKPE-LYS----LGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HH---HTCCEEEEEESCCSHHH-H-HHHTHHH-HGG----GSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HH---cCCCEEEEEeCCCCccc-c-HHHHHHH-HHh----cCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 22 35899999999998643 1 1111 11 111 122 46899999999999999999988764
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=7e-16 Score=145.44 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=73.5
Q ss_pred EEEecCceeeeEecCCCc--------cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 165 HFTFKDLHFKMFDVGGQR--------SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~--------~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.+++++..+.+|||||++ .++..|..++++++++|||+|.++ .... ...++..++..
T Consensus 45 ~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~----------~~~~--~d~~~~~~l~~--- 109 (436)
T 2hjg_A 45 SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE----------GVTA--ADEEVAKILYR--- 109 (436)
T ss_dssp ECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTT----------CSCH--HHHHHHHHHTT---
T ss_pred EEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCH--HHHHHHHHHHH---
Confidence 344567889999999996 677888999999999999999986 2222 22334444432
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.+.|++|++||+|+..... ...+.. . .++ .++++||++|.|+.++++++.+.+.
T Consensus 110 ~~~pvilv~NK~D~~~~~~---~~~~~~-~----lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 110 TKKPVVLAVNKLDNTEMRA---NIYDFY-S----LGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CCSCEEEEEECCCC--------CCCSSG-G----GSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred cCCCEEEEEECccCccchh---hHHHHH-H----cCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 4689999999999875321 111111 1 122 5789999999999999999988764
No 140
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.61 E-value=8.2e-16 Score=147.39 Aligned_cols=113 Identities=15% Similarity=0.166 Sum_probs=82.9
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
++..++||||+|++.+...+..++..+|++|+|+|.++ .....+...+..+.. .++|+++++||+
T Consensus 50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~----~~vPiIVViNKi 114 (537)
T 3izy_P 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKD----AHVPIVLAINKC 114 (537)
T ss_dssp CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHT----TTCCEEECCBSG
T ss_pred CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCcEEEEEecc
Confidence 35679999999999999999999999999999999997 333445555544432 367999999999
Q ss_pred Cccccccc--CCccccc---CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKIT--KSPLTVC---FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~~--~~~l~~~---f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+...... ...+... ..++ ...+.++++||++|.|+.++|+++...+.
T Consensus 115 Dl~~~~~~~v~~~l~~~~~~~e~~--~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 115 DKAEADPEKVKKELLAYDVVCEDY--GGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp GGTTTSCCSSSSHHHHTTSCCCCS--SSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHhhhhhHHhc--CCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 98753211 1122111 1122 13468899999999999999999987653
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.61 E-value=1.2e-15 Score=133.74 Aligned_cols=130 Identities=10% Similarity=0.178 Sum_probs=78.6
Q ss_pred cceeEEEEEecCceeeeEecCCCcccccc-----------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318 159 TGIIETHFTFKDLHFKMFDVGGQRSERKK-----------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF 227 (313)
Q Consensus 159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~-----------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~ 227 (313)
.......+.+++..+.+|||+|+...... ...++++++++|+|+|++++. ........++
T Consensus 59 ~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l 129 (260)
T 2xtp_A 59 KTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQRV 129 (260)
T ss_dssp CSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHHH
T ss_pred eeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHHH
Confidence 34444455667889999999998654322 223678999999999998631 2223344555
Q ss_pred HHHHhCCCCCCCcEEEEee-cCCcccccccC-------CcccccCcCCCCCCC--eEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 228 DSICNSKWFMDTSIILFLN-KNDLFQEKITK-------SPLTVCFPEYTDQKE--IYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 228 ~~~~~~~~~~~~piilv~N-K~Dl~~~k~~~-------~~l~~~f~~~~~~~~--~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
...... . ...|.++++| |+|+....+.. ..+......+ ..+. +..+++||++|.|+.++|++|.+.+
T Consensus 130 ~~~~~~-~-~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 130 KEIFGE-D-AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC-GGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHCG-G-GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT-TTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCc-h-hhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh-CCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 554332 1 1346666665 99987532211 0111111111 1110 1126899999999999999999987
Q ss_pred HHh
Q psy8318 298 IKA 300 (313)
Q Consensus 298 ~~~ 300 (313)
...
T Consensus 207 ~~~ 209 (260)
T 2xtp_A 207 MEK 209 (260)
T ss_dssp HHT
T ss_pred HhC
Confidence 653
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.61 E-value=6.4e-15 Score=139.30 Aligned_cols=112 Identities=13% Similarity=0.239 Sum_probs=70.8
Q ss_pred EEEecCceeeeEecCCCcccccccc--------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERKKWI--------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~~w~--------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.+.+++..+.+|||+|++.....+. .++..++++|+|+|.++ ..... ...++..+ .
T Consensus 266 ~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~~~~-~~~i~~~l-~---- 329 (462)
T 3geh_A 266 QLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT----------GWTTG-DQEIYEQV-K---- 329 (462)
T ss_dssp EEEETTEEEEECC--------------------CCCCSCSEEEEEEETTT----------CSCHH-HHHHHHHH-T----
T ss_pred EEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC----------CCCHH-HHHHHHhc-c----
Confidence 4556778899999999876554333 36789999999999997 22222 23444443 2
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+.|+++|+||+|+...... ..+. ++ . ....++++||++|.|+.++|++|.+.+...
T Consensus 330 -~~piivV~NK~Dl~~~~~~-~~~~----~~-~-~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 330 -HRPLILVMNKIDLVEKQLI-TSLE----YP-E-NITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp -TSCEEEEEECTTSSCGGGS-TTCC----CC-T-TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred -CCcEEEEEECCCCCcchhh-HHHH----Hh-c-cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3699999999998764321 1221 11 1 335689999999999999999999977543
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.60 E-value=7.7e-16 Score=145.96 Aligned_cols=119 Identities=12% Similarity=0.147 Sum_probs=83.2
Q ss_pred EEEEecCceeeeEecCC----------Cccccccccc-cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318 164 THFTFKDLHFKMFDVGG----------QRSERKKWIH-CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN 232 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~G----------q~~~r~~w~~-~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~ 232 (313)
..+..++..+++|||+| ++.++.++.. +++.++++|+|+|.++ .-.+....++..+..
T Consensus 236 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-----------~~~~~~~~~~~~~~~ 304 (456)
T 4dcu_A 236 TSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-----------GIIEQDKRIAGYAHE 304 (456)
T ss_dssp EEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-----------CCCHHHHHHHHHHHH
T ss_pred EEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-----------CcCHHHHHHHHHHHH
Confidence 34566778999999999 6777766654 7899999999999986 111223334444433
Q ss_pred CCCCCCCcEEEEeecCCccccccc-CC----cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 233 SKWFMDTSIILFLNKNDLFQEKIT-KS----PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 233 ~~~~~~~piilv~NK~Dl~~~k~~-~~----~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.+.|++||+||+|+..+... .. .+...++.. ..+.+++|||++|.||.++|+++.+.+...
T Consensus 305 ----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 305 ----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL---DYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp ----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG---TTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred ----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC---CCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 46899999999998753211 11 122233222 345789999999999999999999887544
No 144
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.60 E-value=6.3e-15 Score=135.34 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=85.2
Q ss_pred ecceeEEEEEecCceeeeEecCCCcccc---------ccccccccCCcEEEEEEecCCcccccccccccc--cHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSER---------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN--RMIESMKL 226 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r---------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~--~l~e~~~~ 226 (313)
|.+.....+..++..+.+|||+|+.... .....+...++++++|+|+++ .. .+.+...+
T Consensus 201 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~----------~~~~~~~~~~~~ 270 (357)
T 2e87_A 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE----------HCGFPLEEQIHL 270 (357)
T ss_dssp SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC----------TTSSCHHHHHHH
T ss_pred eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc----------cccCCHHHHHHH
Confidence 3344444555567889999999985432 111234457999999999987 33 56666777
Q ss_pred HHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 227 FDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+..+.... .+.|+++|+||+|+...... .+...... ..++.++++||++|+||.++|+++.+.+...
T Consensus 271 ~~~i~~~~--~~~piilV~NK~Dl~~~~~~-~~~~~~~~----~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 271 FEEVHGEF--KDLPFLVVINKIDVADEENI-KRLEKFVK----EKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp HHHHHHHT--TTSCEEEEECCTTTCCHHHH-HHHHHHHH----HTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCEEEEEECcccCChHHH-HHHHHHHH----hcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 77765421 26899999999998653211 11111111 1345688999999999999999999988643
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=5.4e-16 Score=146.21 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=83.6
Q ss_pred eEEEEEecCceeeeEecCCCc----------ccccccc-ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318 162 IETHFTFKDLHFKMFDVGGQR----------SERKKWI-HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230 (313)
Q Consensus 162 ~~~~~~~~~~~~~i~D~~Gq~----------~~r~~w~-~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~ 230 (313)
....+.+++..+++|||+|+. .++..+. .+++.++++|+|+|+++ ..+.++ ..++..+
T Consensus 214 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~----------~~s~~~-~~~~~~~ 282 (436)
T 2hjg_A 214 VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE----------GIIEQD-KRIAGYA 282 (436)
T ss_dssp CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHHHH
T ss_pred eEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc----------CCcHHH-HHHHHHH
Confidence 334556677889999999984 3333333 47889999999999997 333333 3455554
Q ss_pred HhCCCCCCCcEEEEeecCCccccccc-C----CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 231 CNSKWFMDTSIILFLNKNDLFQEKIT-K----SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 231 ~~~~~~~~~piilv~NK~Dl~~~k~~-~----~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.. .++|+++++||+|+..+... . ..+...++.. ..+.++++||++|.||.++|+++.+.+...
T Consensus 283 ~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 283 HE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL---DYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp HH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG---TTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC---CCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 33 46899999999998753211 1 1122333322 345789999999999999999999887653
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=5.6e-15 Score=138.05 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=72.9
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+|||+||+.+.+.+......+|++|+|+|.++ .-...++.+.+..+.. ....|+++++||+|+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~----------g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE----------PCPQPQTKEHLMALEI---LGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---TTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCC----------CCCCchhHHHHHHHHH---cCCCeEEEEEEccCC
Confidence 579999999999998888888888999999999986 1112222332222211 123589999999998
Q ss_pred cccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
...... ..++.+.+..+ ....+.++++||++|+|+.+++++|.+.+.
T Consensus 148 ~~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 148 VDEKQAEENYEQIKEFVKGT-IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp SCTTTTTTHHHHHHHHHTTS-TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhhc-CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 754211 12233333333 224567899999999999999999987653
No 147
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.57 E-value=2.2e-15 Score=137.26 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=82.3
Q ss_pred EEecC-ceeeeEecCCCc----cccccccccc---cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCC
Q psy8318 166 FTFKD-LHFKMFDVGGQR----SERKKWIHCF---EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWF 236 (313)
Q Consensus 166 ~~~~~-~~~~i~D~~Gq~----~~r~~w~~~~---~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~ 236 (313)
+.+.+ ..+.+||++|+. ..+.++..++ +.++++|+|+|+++.+ ..+.+++...+..++... +..
T Consensus 200 v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l 272 (342)
T 1lnz_A 200 VETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRL 272 (342)
T ss_dssp EECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSST
T ss_pred EEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhh
Confidence 44544 789999999963 2334445554 4599999999999732 124455555566665442 234
Q ss_pred CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+.|++||+||+|+..+......+.+.+. ..+.++++||++++|+.++|++|.+.+..
T Consensus 273 ~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-----~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAAENLEAFKEKLT-----DDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp TTSCBCBEEECTTSTTHHHHHHHHHHHCC-----SCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred cCCCEEEEEECccCCCCHHHHHHHHHHhh-----cCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 67999999999998754211122323222 11457899999999999999999988753
No 148
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.56 E-value=7.8e-15 Score=136.90 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=82.8
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+|||+|++.+.+.+..++..+|++|+|+|.++ ...+.+...++..+... ...|+++++||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~----------~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE----------PFPQPQTREHFVALGII---GVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTS----------CSSCHHHHHHHHHHHHH---TCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC----------CCCcHHHHHHHHHHHHc---CCCCEEEEEECccc
Confidence 679999999999999999999999999999999997 33344444444433211 22589999999998
Q ss_pred cccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
...... ..++.+.+..+ ....+.++++||++|+|+.+++++|.+.+.
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKGT-WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHHHhh-CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 654211 12333333333 223567999999999999999999987653
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.56 E-value=2e-14 Score=138.16 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=64.0
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.|+......+.+++..+++|||+|+..+...+..+++.++++|+|+|.++ .-......++..+..
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~-----------g~~~~t~~~~~~~~~---- 132 (528)
T 3tr5_A 68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-----------GVEPRTIKLMEVCRL---- 132 (528)
T ss_dssp CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-----------CSCHHHHHHHHHHHT----
T ss_pred eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCC-----------CCCHHHHHHHHHHHH----
Confidence 34445556677889999999999999999999999999999999999997 222344555555433
Q ss_pred CCCcEEEEeecCCccc
Q psy8318 237 MDTSIILFLNKNDLFQ 252 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~ 252 (313)
.++|+++|+||+|+..
T Consensus 133 ~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 133 RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TTCCEEEEEECTTSCC
T ss_pred cCCCEEEEEeCCCCcc
Confidence 3689999999999864
No 150
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.56 E-value=7.3e-15 Score=139.72 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=78.0
Q ss_pred EecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy8318 167 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLN 246 (313)
Q Consensus 167 ~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~N 246 (313)
.+++..+++|||+||+.+...|..++..+|++|+|+|.++- ...++...+..... .+.|+++++|
T Consensus 47 ~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g-----------~~~qT~e~l~~~~~----~~vPiIVviN 111 (501)
T 1zo1_I 47 ETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG-----------VMPQTIEAIQHAKA----AQVPVVVAVN 111 (501)
T ss_dssp CTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB-----------SCTTTHHHHHHHHH----TTCCEEEEEE
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC-----------ccHHHHHHHHHHHh----cCceEEEEEE
Confidence 33567899999999999999999999999999999998861 11122222222221 3689999999
Q ss_pred cCCcccccc--cCCccc--ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 247 KNDLFQEKI--TKSPLT--VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 247 K~Dl~~~k~--~~~~l~--~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
|+|+..... ....+. ..+++. ....+.++++||++|.|+.++|+++..
T Consensus 112 KiDl~~~~~~~v~~~l~~~~~~~~~-~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 112 KIDKPEADPDRVKNELSQYGILPEE-WGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CSSSSTTCCCCTTCCCCCCCCCTTC-CSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred eccccccCHHHHHHHHHHhhhhHHH-hCCCccEEEEeeeeccCcchhhhhhhh
Confidence 999875311 111221 112211 112468999999999999999999864
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.55 E-value=1.4e-14 Score=136.59 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=81.8
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
..|+.+....++..+..+.+|||+||+.+.+.+..+++.+|++|+|+|.++-.. |. ......++.+.+..+..
T Consensus 80 GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e~-~~~~~~qt~e~l~~~~~--- 152 (439)
T 3j2k_7 80 GKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---ET-GFEKGGQTREHAMLAKT--- 152 (439)
T ss_pred CceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---cc-ccCCCchHHHHHHHHHH---
Confidence 345555666677788899999999999999999999999999999999986210 00 00000122222222211
Q ss_pred CCCCc-EEEEeecCCcccccc-------cCCcccccCcCCC--CCCCeEEEEeecccCcCHHHHHH
Q psy8318 236 FMDTS-IILFLNKNDLFQEKI-------TKSPLTVCFPEYT--DQKEIYTHFTCATDTSNIQFVFD 291 (313)
Q Consensus 236 ~~~~p-iilv~NK~Dl~~~k~-------~~~~l~~~f~~~~--~~~~~~~~~tSA~~~~~v~~~f~ 291 (313)
.+.| +++++||+|+..... ...++...+..+. ....+.++++||++|.|+.++++
T Consensus 153 -~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 -AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred -cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2455 999999999853211 1122222222221 11256899999999999998655
No 152
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.54 E-value=4.5e-14 Score=129.77 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=81.8
Q ss_pred eecceeEEEEEecCceeeeEecCCCcc---------ccccccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHH
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRS---------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKL 226 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~ 226 (313)
+|.+.....+.+.+..+.+|||+|... ++..+. .+..++.+++|+|+++ .. ...+....
T Consensus 212 ~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~----------~~~~~~~~~~~ 280 (364)
T 2qtf_A 212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTF----------SENLLIETLQS 280 (364)
T ss_dssp --CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTS----------CHHHHHHHHHH
T ss_pred cccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCC----------CcchHHHHHHH
Confidence 344555556777778899999999732 333333 5788999999999986 22 12333333
Q ss_pred HHHHHhCCCCCCCcEEEEeecCCcccccccC-Cccc-ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 227 FDSICNSKWFMDTSIILFLNKNDLFQEKITK-SPLT-VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~-~~l~-~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
+..++......+.|+++|+||+|+....... .... .....+ ......++++||+++.|+.+++++|.+.+...
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKEL-YSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHH-CSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHh-cCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 3333332233568999999999986532110 0000 000011 01234578999999999999999999877654
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.54 E-value=1.2e-14 Score=135.92 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=78.6
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+.+|||+|++.+.+.+......+|++|+|+|.++-. ......+.+..+..+ ...|+++++||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~~------~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII------GQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHHHHc------CCCcEEEEEECccC
Confidence 57999999999998887777788899999999998610 011222233333222 23589999999998
Q ss_pred ccccc---cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKI---TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~---~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..... ...++.+++..+ ....+.++++||++|.|+.+++++|.+.+.
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEGT-VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHhc-CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 75321 112334444332 224567999999999999999999987653
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.53 E-value=6.8e-15 Score=139.42 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=75.0
Q ss_pred EecCceeeeEecCC--------CccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318 167 TFKDLHFKMFDVGG--------QRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD 238 (313)
Q Consensus 167 ~~~~~~~~i~D~~G--------q~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~ 238 (313)
+..+..+.+|||+| ++.++..+..++++++++|||+|..+ .+.....++..++.. .+
T Consensus 67 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~------------~~~~~d~~l~~~l~~---~~ 131 (456)
T 4dcu_A 67 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE------------GVTAADEEVAKILYR---TK 131 (456)
T ss_dssp TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSS------------CSCHHHHHHHHHHTT---CC
T ss_pred EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCC------------CCChHHHHHHHHHHH---cC
Confidence 34678999999999 88888899999999999999999764 222333444455543 57
Q ss_pred CcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 239 TSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.|++||+||+|+..... ...+.+. . ..+ ..+++||++|.|+.++++++.+.+.
T Consensus 132 ~pvilV~NK~D~~~~~~---~~~e~~~-l--g~~-~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 132 KPVVLAVNKLDNTEMRA---NIYDFYS-L--GFG-EPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp SCEEEEEECC------------CCSGG-G--SSS-SEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred CCEEEEEECccchhhhh---hHHHHHH-c--CCC-ceEEeecccccchHHHHHHHHhhcc
Confidence 89999999999865321 1111111 1 011 3469999999999999999987653
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.53 E-value=2.1e-15 Score=133.50 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=62.6
Q ss_pred eeecceeEEEEEe--cC--ceeeeEecCCCc-------cccccc-------ccccc-------------CCcEEEEEEec
Q psy8318 156 VKTTGIIETHFTF--KD--LHFKMFDVGGQR-------SERKKW-------IHCFE-------------GVTAIIFCVAL 204 (313)
Q Consensus 156 ~~T~g~~~~~~~~--~~--~~~~i~D~~Gq~-------~~r~~w-------~~~~~-------------~~~~iifv~dl 204 (313)
.+|+++......+ ++ .++++|||+|+. .++.++ ..|+. .+|+++|+++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 3566655544444 33 589999999973 233333 23332 37899999987
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecc
Q psy8318 205 SGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCAT 281 (313)
Q Consensus 205 s~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~ 281 (313)
+. .........+++.+.. ++|+++|+||+|+....-.. ..+.+.+. ..++.++.+||.
T Consensus 126 ~~----------~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~----~~~i~v~~~sa~ 186 (274)
T 3t5d_A 126 SG----------HGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQ----EHKIKIYEFPET 186 (274)
T ss_dssp CC----------SSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHH----HTTCCCCCC---
T ss_pred CC----------CCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHH----HcCCeEEcCCCC
Confidence 75 1222333445555422 68999999999976421111 12222221 235567888999
Q ss_pred cCcCHHHHHHHHHHHH
Q psy8318 282 DTSNIQFVFDAVTDVI 297 (313)
Q Consensus 282 ~~~~v~~~f~~i~~~i 297 (313)
+++|+.+++++|.+.+
T Consensus 187 ~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 187 DDEEENKLVKKIKDRL 202 (274)
T ss_dssp --------CHHHHHTC
T ss_pred CChhHHHHHHHHhcCC
Confidence 9999999999887643
No 156
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.52 E-value=2.7e-14 Score=131.51 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=90.7
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
..|+++....++.++..+.+|||+|++.+.+.....++.+|++|+|+| ++ ....+..+++..+..
T Consensus 45 giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-----------g~~~qt~e~~~~~~~--- 109 (370)
T 2elf_A 45 GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-----------GLDAHTGECIIALDL--- 109 (370)
T ss_dssp EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-----------CCCHHHHHHHHHHHH---
T ss_pred CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-----------CCcHHHHHHHHHHHH---
Confidence 466666666777788899999999999998888888899999999999 54 333444444443322
Q ss_pred CCCCcE-EEEee-cCCcccccc-cC--CcccccCcCCCCCCCeEEEE--eeccc---CcCHHHHHHHHHHHHHH
Q psy8318 236 FMDTSI-ILFLN-KNDLFQEKI-TK--SPLTVCFPEYTDQKEIYTHF--TCATD---TSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 236 ~~~~pi-ilv~N-K~Dl~~~k~-~~--~~l~~~f~~~~~~~~~~~~~--tSA~~---~~~v~~~f~~i~~~i~~ 299 (313)
.+.|. ++++| |+|+ .+.. .. .++.+.+..+ ....+.+++ +||++ ++|+.+++++|.+.+-.
T Consensus 110 -~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~-~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 110 -LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT-VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp -TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS-TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred -cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc-CCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 24676 88899 9999 4321 11 3444444433 223568899 99999 99999999999887653
No 157
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.52 E-value=3.2e-14 Score=123.97 Aligned_cols=131 Identities=13% Similarity=0.244 Sum_probs=79.8
Q ss_pred ecceeEEEEEecCceeeeEecCCC--------ccccccccccc----cCCcEEEEEEecCCcccccccccccccHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQ--------RSERKKWIHCF----EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK 225 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq--------~~~r~~w~~~~----~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~ 225 (313)
|.......+..++..+.+|||+|. +.+.+....++ .+++++|+|+|++.+ ........+
T Consensus 57 T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~---------~~~~~~~~~ 127 (247)
T 3lxw_A 57 TRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRF---------TAQDQQAVR 127 (247)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBC---------CHHHHHHHH
T ss_pred cccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC---------CHHHHHHHH
Confidence 344445556678899999999996 33333333444 899999999999863 222234455
Q ss_pred HHHHHHhCCCCCCCcEEEEeecCCccccccc----C---CcccccCcCCCCCCCeEEEEeec---ccCcCHHHHHHHHHH
Q psy8318 226 LFDSICNSKWFMDTSIILFLNKNDLFQEKIT----K---SPLTVCFPEYTDQKEIYTHFTCA---TDTSNIQFVFDAVTD 295 (313)
Q Consensus 226 ~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~----~---~~l~~~f~~~~~~~~~~~~~tSA---~~~~~v~~~f~~i~~ 295 (313)
++.++.. ....+.|++||+||.|+....+. . ..+......+ . ..+..+..++ .++.||.++++.|.+
T Consensus 128 ~l~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~-g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~ 204 (247)
T 3lxw_A 128 QVRDMFG-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC-G-GRVCAFDNRATGREQEAQVEQLLGMVEG 204 (247)
T ss_dssp HHHHHHC-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT-T-TCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc-C-CeEEEEeCCCCccccHHHHHHHHHHHHH
Confidence 5555543 23346899999999998653221 0 1122222222 1 1222333333 236899999999988
Q ss_pred HHHHh
Q psy8318 296 VIIKA 300 (313)
Q Consensus 296 ~i~~~ 300 (313)
.+.++
T Consensus 205 ~~~~~ 209 (247)
T 3lxw_A 205 LVLEH 209 (247)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77653
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.52 E-value=3.2e-14 Score=133.99 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=76.9
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHH-------HHHHHHH
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI-------ESMKLFD 228 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~-------e~~~~~~ 228 (313)
..|+.+....++..+..+.+|||+|++.+.+.+..+++.+|++|+|+|.++ .+++ +..+.+.
T Consensus 69 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-----------gsfe~~~~~~~qt~~~~~ 137 (435)
T 1jny_A 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-----------GEYEAGMSVEGQTREHII 137 (435)
T ss_dssp --------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-----------THHHHHHSTTCHHHHHHH
T ss_pred CceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-----------CccccccccchHHHHHHH
Confidence 345555555667778999999999999999999999999999999999996 2222 2222222
Q ss_pred HHHhCCCCCCCcEEEEeecCCccccc-------ccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHH
Q psy8318 229 SICNSKWFMDTSIILFLNKNDLFQEK-------ITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFD 291 (313)
Q Consensus 229 ~~~~~~~~~~~piilv~NK~Dl~~~k-------~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~ 291 (313)
.... ..-.|+++++||+|+.... ....++.+.+..+. ....+.++++||++|+|+.+.+.
T Consensus 138 ~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 138 LAKT---MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHH---TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHH---cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1111 1224799999999986521 01123333333221 11247899999999999976543
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.52 E-value=1.1e-14 Score=138.64 Aligned_cols=127 Identities=11% Similarity=0.098 Sum_probs=84.3
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.|+.+....+.+++..+.+|||+|++.+.+.+..++..+|++|+|+|.++- ...++.+.+..+ ..
T Consensus 59 iTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~-~~--- 123 (482)
T 1wb1_A 59 ITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLIL-DH--- 123 (482)
T ss_dssp -----CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHH-HH---
T ss_pred cEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC-----------ccHHHHHHHHHH-HH---
Confidence 344444445566778999999999999999999999999999999999861 112223322222 11
Q ss_pred CCCcEEEEeecCCccccc-c--cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEK-I--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k-~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.++|+++++||+|+..+. . ...++.+.+.....-..+.++++||++|+|+.+++++|.+.+.
T Consensus 124 ~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 124 FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 357889999999986531 1 1122333222110002457899999999999999999998774
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.51 E-value=4.2e-14 Score=137.24 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=79.2
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++|||+|+..+...+..+++.++++|+|+|.++ .... ++...+..... .+.|+++|+||+|+
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~----------gv~~-qt~~~~~~a~~----~~ipiIvviNKiDl 137 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ----------GIEA-QTVANFWKAVE----QDLVIIPVINKIDL 137 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTT----------BCCH-HHHHHHHHHHH----TTCEEEEEEECTTS
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCC----------CccH-HHHHHHHHHHH----CCCCEEEEEeccCc
Confidence 789999999999999999999999999999999997 2333 23333333332 36899999999998
Q ss_pred cccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..+... ..++.+.+. + ....++++||++|.||.++|++|.+.+.
T Consensus 138 ~~a~~~~v~~el~~~lg-~---~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 138 PSADVDRVKKQIEEVLG-L---DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp TTCCHHHHHHHHHHTSC-C---CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccCHHHHHHHHHHhhC-C---CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 764211 112222221 1 1124789999999999999999988764
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.51 E-value=1.1e-13 Score=134.65 Aligned_cols=113 Identities=12% Similarity=-0.003 Sum_probs=78.3
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
..+++|||+||+.+...|..+++.+|++|+|+|+++- -..++...+..+.. .++|+++++||+|+
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-----------v~~qT~e~l~~l~~----~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-----------CCHHHHHHHHHHHH----TTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-----------ccHhHHHHHHHHHH----cCCeEEEEeccccc
Confidence 3589999999999999999999999999999999961 11223333333322 46899999999998
Q ss_pred ccccccC-------------C-----------cccc-----cCc-----CCC-CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 251 FQEKITK-------------S-----------PLTV-----CFP-----EYT-DQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 251 ~~~k~~~-------------~-----------~l~~-----~f~-----~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
....... . ++.+ .+. ... ....+.++++||++|.||.+++++|..
T Consensus 135 ~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~ 214 (594)
T 1g7s_A 135 IHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMG 214 (594)
T ss_dssp STTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHh
Confidence 6421000 0 0000 010 000 023468999999999999999999998
Q ss_pred HHH
Q psy8318 296 VII 298 (313)
Q Consensus 296 ~i~ 298 (313)
.+.
T Consensus 215 ~~~ 217 (594)
T 1g7s_A 215 LAQ 217 (594)
T ss_dssp HHH
T ss_pred hcc
Confidence 765
No 162
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=122.40 Aligned_cols=127 Identities=10% Similarity=0.135 Sum_probs=75.5
Q ss_pred ecceeEEEEEecCceeeeEecCC-----------CccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGG-----------QRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL 226 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~G-----------q~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~ 226 (313)
|..+....+.+.+..+.+|||+| ++.+.+.+..++.+++++|+|+|++.++ ....+++.+
T Consensus 65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~l~~ 135 (239)
T 3lxx_A 65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT---------EEEHKATEK 135 (239)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS---------SHHHHHHHH
T ss_pred eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC---------HHHHHHHHH
Confidence 33444555667788999999999 3456666777788999999999998743 122233333
Q ss_pred HHHHHhCCCCCCCcEEEEeecCCcccccccCC-------cccccCcCCCCCCCeEEEEeecc-----cCcCHHHHHHHHH
Q psy8318 227 FDSICNSKWFMDTSIILFLNKNDLFQEKITKS-------PLTVCFPEYTDQKEIYTHFTCAT-----DTSNIQFVFDAVT 294 (313)
Q Consensus 227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~-------~l~~~f~~~~~~~~~~~~~tSA~-----~~~~v~~~f~~i~ 294 (313)
+...+... ...|++||+||+|+........ .+.+....+ +..++.+++. +..+|.++|+.+.
T Consensus 136 ~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~v~~ll~~i~ 209 (239)
T 3lxx_A 136 ILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF----GDRYCALNNKATGAEQEAQRAQLLGLIQ 209 (239)
T ss_dssp HHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH----SSSEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc----CCEEEEEECCCCccccHHHHHHHHHHHH
Confidence 33332211 2359999999999865321111 122222222 2224444443 3468999999888
Q ss_pred HHHHH
Q psy8318 295 DVIIK 299 (313)
Q Consensus 295 ~~i~~ 299 (313)
+.+.+
T Consensus 210 ~~~~~ 214 (239)
T 3lxx_A 210 RVVRE 214 (239)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 163
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.50 E-value=2.9e-14 Score=138.56 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=78.9
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl 250 (313)
+.+++|||+|+..+...|..+++.++++|+|+|.++ ....+ +...+..... .+.|+++|+||+|+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~----------gv~~q-t~~~~~~~~~----~~ipiIvViNKiDl 135 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ----------GVEAQ-TLANCYTAME----MDLEVVPVLNKIDL 135 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTT----------CCCTH-HHHHHHHHHH----TTCEEEEEEECTTS
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC----------CCCHH-HHHHHHHHHH----CCCCEEEeeeccCc
Confidence 789999999999999999999999999999999987 22222 2333333332 36899999999998
Q ss_pred cccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 251 FQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 251 ~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
..+... ..++.+.+. + ....++++||++|.||.++|+++.+.+.
T Consensus 136 ~~a~~~~v~~ei~~~lg-~---~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 136 PAADPERVAEEIEDIVG-I---DATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCCHHHHHHHHHHHTC-C---CCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ccccHHHHHHHHHHHhC-C---CcceEEEeecccCCCchhHHHHHhhcCC
Confidence 764211 122333321 1 1123789999999999999999988764
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.50 E-value=3e-14 Score=132.66 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=84.8
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.|++.....+..++..+.+|||+|++.+.+.+..+++.+|++|+|+|.++- ...++.+.+..+..
T Consensus 52 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~~~---- 116 (397)
T 1d2e_A 52 ITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLARQ---- 116 (397)
T ss_dssp EEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHHHH----
T ss_pred cEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-----------CCHHHHHHHHHHHH----
Confidence 455554455666778999999999999988899999999999999999872 22334444433222
Q ss_pred CCCc-EEEEeecCCccccc-c---cCCcccccCcCCC-CCCCeEEEEeecccCcC----------HHHHHHHHHHHH
Q psy8318 237 MDTS-IILFLNKNDLFQEK-I---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSN----------IQFVFDAVTDVI 297 (313)
Q Consensus 237 ~~~p-iilv~NK~Dl~~~k-~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~----------v~~~f~~i~~~i 297 (313)
.++| +++++||+|+.... . ...++.+.+..+. ....+.++++||++|.| +.++++.+.+.+
T Consensus 117 ~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 117 IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 3577 78999999987411 1 1122333333221 12246789999999775 778888776654
No 165
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.50 E-value=3.7e-14 Score=133.71 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=75.1
Q ss_pred EEEEecCceeeeEecCCCccccccc------------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERKKW------------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~~w------------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~ 231 (313)
..+.+++..+.+|||+|++...... ..+++.++++++|+|.++ ..+..+ ..+... +
T Consensus 221 ~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~----------~~~~~~-~~i~~~-l 288 (439)
T 1mky_A 221 DEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ----------GITRQD-QRMAGL-M 288 (439)
T ss_dssp EEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHHH-H
T ss_pred EEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCCHHH-HHHHHH-H
Confidence 3556677889999999986544322 235677999999999986 222222 222222 2
Q ss_pred hCCCCCCCcEEEEeecCCccccccc-CC----cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 232 NSKWFMDTSIILFLNKNDLFQEKIT-KS----PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 232 ~~~~~~~~piilv~NK~Dl~~~k~~-~~----~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
.. .++|+++++||+|+..+... .. .+...+... ....++++||++|.||.++|+.+.+.+...
T Consensus 289 ~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 289 ER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI---DYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp HH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG---TTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC---CCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 21 36899999999998653211 11 122223222 345689999999999999999998876543
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=4.1e-14 Score=133.25 Aligned_cols=121 Identities=12% Similarity=-0.012 Sum_probs=80.0
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
-|+.+....+..++..+.+|||+|++.+.+.+..++..++++|+|+|.++- ...+....+..+.. .
T Consensus 90 iTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g-----------~~~qt~~~l~~~~~---~ 155 (434)
T 1zun_B 90 ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-----------VQTQTRRHSYIASL---L 155 (434)
T ss_dssp CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-----------SCHHHHHHHHHHHH---T
T ss_pred cEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH---c
Confidence 344444555666788999999999999999999999999999999999861 12233333332211 1
Q ss_pred CCCcEEEEeecCCccccc---c--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEK---I--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFD 291 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k---~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~ 291 (313)
...|+++++||+|+.... . ...++.+.+..+. ....+.++++||++|.|+.++|.
T Consensus 156 ~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 156 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 224699999999986521 1 1122222222221 02347899999999999987543
No 167
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.48 E-value=3.9e-14 Score=135.11 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=78.2
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.|+.+....++.++..+.+|||+|++.+.+.+..+++.++++|+|+|.++-.. +.. ..-.......+.. +.. .
T Consensus 97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~---~~~-~~~~~qt~e~~~~-~~~--~ 169 (483)
T 3p26_A 97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF---ESG-FDLDGQTKEHMLL-ASS--L 169 (483)
T ss_dssp SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHHH-HHH--T
T ss_pred cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc---ccc-cchhhhHHHHHHH-HHH--c
Confidence 34445556677788999999999999999999999999999999999987210 000 0001112222211 111 1
Q ss_pred CCCcEEEEeecCCccccc-cc----CCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318 237 MDTSIILFLNKNDLFQEK-IT----KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF 288 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k-~~----~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~ 288 (313)
...|++|++||+|+.... .. ...+...+..+. ....+.++++||++|+|+.+
T Consensus 170 ~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 170 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 235799999999987521 11 112222222221 11257899999999999875
No 168
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.48 E-value=2.5e-14 Score=133.56 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=75.0
Q ss_pred ceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT 239 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~ 239 (313)
......+..++..+.+|||+|++.+.+.+..++..+|++|+|+|.++- ...+...++..+.. .++
T Consensus 64 ~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~~~l~~~~~----~~i 128 (405)
T 2c78_A 64 NTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ----VGV 128 (405)
T ss_dssp SCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-----------CCHHHHHHHHHHHH----TTC
T ss_pred EeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC-----------CcHHHHHHHHHHHH----cCC
Confidence 333345555778999999999999999999999999999999999862 22344444444322 256
Q ss_pred c-EEEEeecCCccccc--c--cCCcccccCcCCC-CCCCeEEEEeecccCcC
Q psy8318 240 S-IILFLNKNDLFQEK--I--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSN 285 (313)
Q Consensus 240 p-iilv~NK~Dl~~~k--~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~ 285 (313)
| +++++||+|+.... + ...++.+.+..+. ....+.++++||++|.|
T Consensus 129 p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp CCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred CEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 7 89999999987421 1 1112333332221 11246789999999988
No 169
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.48 E-value=5.5e-14 Score=126.05 Aligned_cols=106 Identities=13% Similarity=0.010 Sum_probs=77.6
Q ss_pred ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
.++++||+ |++++.+|..||++++++|+|+|+++ +. ++.....|+..+-. .++|++||+||+|
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~----------~~~s~~~l~~~l~~~~~----~~~piilv~NK~D 126 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM----------PETSTYIIDKFLVLAEK----NELETVMVINKMD 126 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSST----------TCCCHHHHHHHHHHHHH----TTCEEEEEECCGG
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCC----------CCCCHHHHHHHHHHHHH----CCCCEEEEEeHHH
Confidence 37999999 99999999999999999999999997 43 34444445544322 4689999999999
Q ss_pred cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
+..+... .+..+....+ ... +.+++|||++|.||.++|.++..
T Consensus 127 L~~~~~v-~~~~~~~~~~-~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 127 LYDEDDL-RKVRELEEIY-SGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp GCCHHHH-HHHHHHHHHH-TTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred cCCchhH-HHHHHHHHHH-hhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 8653211 1122222223 222 67899999999999999998764
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.47 E-value=7.4e-14 Score=124.62 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=72.3
Q ss_pred CceeeeEecCCCc-------------cccccccccccCCcEEE-EEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 170 DLHFKMFDVGGQR-------------SERKKWIHCFEGVTAII-FCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 170 ~~~~~i~D~~Gq~-------------~~r~~w~~~~~~~~~ii-fv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
...+.+|||+|+. .++..+..|++.++++| +|+|.++ .-...+...+++.+ ..
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~----------~~~~~~~~~~~~~~-~~-- 190 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEV-DP-- 190 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS----------CGGGCHHHHHHHHH-CT--
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc----------chhhhHHHHHHHHh-CC--
Confidence 4789999999964 34567778888888776 7999876 12222333344443 21
Q ss_pred CCCCcEEEEeecCCccccccc-CCcccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
.+.|+++|+||+|+..+... ...+...+... ..+ ..++++||++|.|+.++|+++.+.
T Consensus 191 -~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 191 -QGQRTIGVITKLDLMDEGTDARDVLENKLLPL--RRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp -TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCC--TTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred -CCCeEEEEEEccccCCCCchHHHHHhCCcCcC--CCCcEEEECCChhhccccccHHHHHHHH
Confidence 46899999999998753211 11111111111 122 357889999999999999998763
No 171
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.47 E-value=7.1e-14 Score=125.35 Aligned_cols=112 Identities=19% Similarity=0.113 Sum_probs=74.5
Q ss_pred EEecCceeeeEecCCCc---------cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 166 FTFKDLHFKMFDVGGQR---------SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 166 ~~~~~~~~~i~D~~Gq~---------~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
+..++..+.+|||+|+. .+...+..+++.+++++||+|.+++ .... .++...+..
T Consensus 51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~~---~~i~~~l~~--- 114 (301)
T 1ega_A 51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPDD---EMVLNKLRE--- 114 (301)
T ss_dssp EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHHH---HHHHHHHHS---
T ss_pred EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHHH---HHHHHHHHh---
Confidence 34467889999999997 3445567788999999999998752 1111 122222332
Q ss_pred CCCcEEEEeecCCccccccc-CCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318 237 MDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+.|+++++||+|+...+.. ...+.+ +. ...++ .++++||+++.|+.++++++.+.+
T Consensus 115 ~~~P~ilvlNK~D~~~~~~~~~~~l~~-l~---~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 115 GKAPVILAVNKVDNVQEKADLLPHLQF-LA---SQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SSSCEEEEEESTTTCCCHHHHHHHHHH-HH---TTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred cCCCEEEEEECcccCccHHHHHHHHHH-HH---HhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999998751111 111111 11 11233 588999999999999999988643
No 172
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.45 E-value=4.1e-14 Score=134.33 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=65.7
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCccc-ccccccccccHHHHHHHHHHHHhC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDS-VLAEDEEMNRMIESMKLFDSICNS 233 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~-~~~e~~~~~~l~e~~~~~~~~~~~ 233 (313)
+..|+++....+..++..+.+|||+||+.+.+.+..++..+|++|+|+|.++-.. ...+. ... +...+.....
T Consensus 105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~--~~q---t~e~l~~~~~- 178 (467)
T 1r5b_A 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER--GGQ---TREHAVLART- 178 (467)
T ss_dssp --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST--TCC---HHHHHHHHHH-
T ss_pred cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC--CCc---HHHHHHHHHH-
Confidence 3456666656677788899999999999999999999999999999999986200 00000 012 2222222111
Q ss_pred CCCCCCc-EEEEeecCCcccccc-------cCCcccccCcC---CCCCCCeEEEEeecccCcCHHHHH
Q psy8318 234 KWFMDTS-IILFLNKNDLFQEKI-------TKSPLTVCFPE---YTDQKEIYTHFTCATDTSNIQFVF 290 (313)
Q Consensus 234 ~~~~~~p-iilv~NK~Dl~~~k~-------~~~~l~~~f~~---~~~~~~~~~~~tSA~~~~~v~~~f 290 (313)
.++| ++|++||+|+..... ...++...+.. +.....+.++++||++|.|+.++|
T Consensus 179 ---~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 179 ---QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ---TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ---cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 3466 999999999854110 01122222221 200125789999999999998765
No 173
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.7e-14 Score=132.62 Aligned_cols=109 Identities=11% Similarity=0.151 Sum_probs=56.4
Q ss_pred ceeeeEecCCC-------cccccccc-------ccccCC-------------cEEEEEEecCCcccccccccccccHHHH
Q psy8318 171 LHFKMFDVGGQ-------RSERKKWI-------HCFEGV-------------TAIIFCVALSGYDSVLAEDEEMNRMIES 223 (313)
Q Consensus 171 ~~~~i~D~~Gq-------~~~r~~w~-------~~~~~~-------------~~iifv~dls~~d~~~~e~~~~~~l~e~ 223 (313)
..+++|||+|+ +.++.+|. .|++++ ++++|+++.+. .++.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-----------~~l~~~ 163 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPL 163 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-----------SSCCHH
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-----------CCcchh
Confidence 47999999999 77888886 666543 45777776532 233322
Q ss_pred H-HHHHHHHhCCCCCCCcEEEEeecCCccccc-ccC--CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 224 M-KLFDSICNSKWFMDTSIILFLNKNDLFQEK-ITK--SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 224 ~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~~--~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
. .++..+ . .++|+++|+||+|+.... +.. ..+.+.. ...++.++++||+++.+ .+.|.++.+.+.+
T Consensus 164 d~~~~~~l-~----~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~----~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 164 DVAFMKAI-H----NKVNIVPVIAKADTLTLKERERLKKRILDEI----EEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHT-C----S-SCEEEEEECCSSSCHHHHHHHHHHHHHHT----TCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHh-c----cCCCEEEEEECCCCCCHHHHHHHHHHHHHHH----HHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 2 333332 2 468999999999987532 111 1222222 23467789999999999 8999999988865
Q ss_pred h
Q psy8318 300 A 300 (313)
Q Consensus 300 ~ 300 (313)
.
T Consensus 234 ~ 234 (361)
T 2qag_A 234 S 234 (361)
T ss_dssp T
T ss_pred c
Confidence 4
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.42 E-value=2.4e-13 Score=128.78 Aligned_cols=122 Identities=14% Similarity=0.059 Sum_probs=77.5
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHH---HHHHHHHHHHhC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI---ESMKLFDSICNS 233 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~---e~~~~~~~~~~~ 233 (313)
.|+.+....++..+..+.+|||+||+.+.+.+..++..+|++|+|+|.++-. ...+++ .....+.....
T Consensus 71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~-------~~~sf~~~~qt~~~~~~~~~- 142 (458)
T 1f60_A 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE-------FEAGISKDGQTREHALLAFT- 142 (458)
T ss_dssp CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH-------HHHHTCTTSHHHHHHHHHHH-
T ss_pred cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCc-------cccccCcchhHHHHHHHHHH-
Confidence 4455555566777889999999999999999999999999999999998610 000010 23332222211
Q ss_pred CCCCCCc-EEEEeecCCccc--c-cc--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHHH
Q psy8318 234 KWFMDTS-IILFLNKNDLFQ--E-KI--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFV 289 (313)
Q Consensus 234 ~~~~~~p-iilv~NK~Dl~~--~-k~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~ 289 (313)
.++| +++++||+|+.. + .. ...++.+.+..+. ....+.++++||++|.|+.+.
T Consensus 143 ---~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 143 ---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp ---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ---cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 2454 999999999873 1 11 1122332222221 112367899999999998644
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.41 E-value=1.4e-12 Score=129.37 Aligned_cols=83 Identities=17% Similarity=0.069 Sum_probs=62.1
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.+|++.....+.+++..+++|||+|+..+...|..+++.+|++|+|+|.++. .. ......+..+..
T Consensus 62 giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g----------~~-~~t~~~~~~~~~--- 127 (691)
T 1dar_A 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG----------VE-PQSETVWRQAEK--- 127 (691)
T ss_dssp -----CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC----------SC-HHHHHHHHHHHH---
T ss_pred ccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC----------cc-hhhHHHHHHHHH---
Confidence 4566666667778899999999999999999999999999999999999972 22 233344444433
Q ss_pred CCCCcEEEEeecCCcccc
Q psy8318 236 FMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~ 253 (313)
.+.|+++|+||+|+...
T Consensus 128 -~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 128 -YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp -TTCCEEEEEECTTSTTC
T ss_pred -cCCCEEEEEECCCcccC
Confidence 36899999999998753
No 176
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.8e-13 Score=132.40 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=77.8
Q ss_pred ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237 (313)
Q Consensus 158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~ 237 (313)
|+.+....+..++..+.||||+|++.+.+.+..+++.++++|+|+|.++-. .+. .......+...+..+ .. ..
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e~-~~~~~~qt~e~l~~~-~~--lg 304 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FES-GFDLDGQTKEHMLLA-SS--LG 304 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HHT-TCCTTSHHHHHHHHH-HT--TT
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---ccc-cchhhhHHHHHHHHH-HH--cC
Confidence 344444566778899999999999999999999999999999999998610 000 000011222222222 11 12
Q ss_pred CCcEEEEeecCCccccc-cc----CCcccccCcCCC-CCCCeEEEEeecccCcCHHHH
Q psy8318 238 DTSIILFLNKNDLFQEK-IT----KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFV 289 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~k-~~----~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~ 289 (313)
..|++|++||+|+.... .. ...+...+..+. ....+.++++||++|.||.++
T Consensus 305 i~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 305 IHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred CCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 34699999999986521 00 112222222221 112468899999999999865
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.39 E-value=3.3e-12 Score=122.78 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=60.8
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF 236 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~ 236 (313)
.|+......+.+++..+++|||+|+..+...+..++..++++|+|+|.++- -......++... . .
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g-----------~~~~t~~~~~~~-~---~ 132 (529)
T 2h5e_A 68 ISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG-----------VEDRTRKLMEVT-R---L 132 (529)
T ss_dssp --CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHH-T---T
T ss_pred cceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc-----------chHHHHHHHHHH-H---H
Confidence 444555567788899999999999999999899999999999999999872 112233333332 2 2
Q ss_pred CCCcEEEEeecCCccc
Q psy8318 237 MDTSIILFLNKNDLFQ 252 (313)
Q Consensus 237 ~~~piilv~NK~Dl~~ 252 (313)
.++|+++|+||+|+..
T Consensus 133 ~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 133 RDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTCCEEEEEECTTSCC
T ss_pred cCCCEEEEEcCcCCcc
Confidence 4689999999999865
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.36 E-value=1.4e-12 Score=114.53 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=53.9
Q ss_pred ceeEEEEEecCceeeeEecCCCcccccccccccc---------CCcEEEEEEecCCcccccccccccccH-HHHHHHHHH
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFE---------GVTAIIFCVALSGYDSVLAEDEEMNRM-IESMKLFDS 229 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~---------~~~~iifv~dls~~d~~~~e~~~~~~l-~e~~~~~~~ 229 (313)
......+..++..+.+|||+|+..++.....+++ ++++++||+|++... .... .+....+..
T Consensus 73 ~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~--------~~~~~~~~~~~l~~ 144 (262)
T 3def_A 73 RPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA--------VDELDKQVVIAITQ 144 (262)
T ss_dssp CCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC--------CCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC--------CCHHHHHHHHHHHH
Confidence 3444556678889999999999887766655554 789999999987511 1111 133333433
Q ss_pred HHhCCCCCCCcEEEEeecCCcc
Q psy8318 230 ICNSKWFMDTSIILFLNKNDLF 251 (313)
Q Consensus 230 ~~~~~~~~~~piilv~NK~Dl~ 251 (313)
.... ....|+++|+||+|+.
T Consensus 145 ~~~~--~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 145 TFGK--EIWCKTLLVLTHAQFS 164 (262)
T ss_dssp HHCG--GGGGGEEEEEECTTCC
T ss_pred Hhch--hhhcCEEEEEeCcccC
Confidence 3321 1124999999999985
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.36 E-value=6.1e-13 Score=135.63 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=79.6
Q ss_pred EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-EE
Q psy8318 164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-II 242 (313)
Q Consensus 164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-ii 242 (313)
..++.++..+.+|||+||+.+.+.+..++..+|++|+|+|.++-. ..++.+.+..+.. .++| ++
T Consensus 352 v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv-----------~~QTrEhL~ll~~----lgIP~II 416 (1289)
T 3avx_A 352 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-----------MPQTREHILLGRQ----VGVPYII 416 (1289)
T ss_dssp EEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS-----------CTTHHHHHHHHHH----HTCSCEE
T ss_pred EEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC-----------cHHHHHHHHHHHH----cCCCeEE
Confidence 345556789999999999999988889999999999999999721 1222333322211 2467 89
Q ss_pred EEeecCCccccc--c--cCCcccccCcCCC-CCCCeEEEEeecccC--------cCHHHHHHHHHHHH
Q psy8318 243 LFLNKNDLFQEK--I--TKSPLTVCFPEYT-DQKEIYTHFTCATDT--------SNIQFVFDAVTDVI 297 (313)
Q Consensus 243 lv~NK~Dl~~~k--~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~--------~~v~~~f~~i~~~i 297 (313)
|++||+|+.... + ...++.+.+..+. ....+.++++||++| .|+.+++++|.+.+
T Consensus 417 VVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 417 VFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp EEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred EEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 999999987421 1 1122333332221 123467899999999 46777887776644
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.35 E-value=3.1e-12 Score=126.37 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=58.9
Q ss_pred ceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318 160 GIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT 239 (313)
Q Consensus 160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~ 239 (313)
......+..++..+++|||+|+..++..+..+++.++++++|+|.++- -......++..+.. .+.
T Consensus 63 ~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g-----------~~~qt~~~~~~~~~----~~i 127 (665)
T 2dy1_A 63 RTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG-----------VQVGTERAWTVAER----LGL 127 (665)
T ss_dssp SCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC-----------SCHHHHHHHHHHHH----TTC
T ss_pred EecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc-----------cchhHHHHHHHHHH----ccC
Confidence 334445566788999999999999999999999999999999998751 11233345544433 368
Q ss_pred cEEEEeecCCcc
Q psy8318 240 SIILFLNKNDLF 251 (313)
Q Consensus 240 piilv~NK~Dl~ 251 (313)
|+++++||+|+.
T Consensus 128 p~ilv~NKiD~~ 139 (665)
T 2dy1_A 128 PRMVVVTKLDKG 139 (665)
T ss_dssp CEEEEEECGGGC
T ss_pred CEEEEecCCchh
Confidence 999999999986
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.34 E-value=3.4e-13 Score=131.40 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=58.3
Q ss_pred eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccc--cccHHHHHHHHHHHHhCC
Q psy8318 157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEE--MNRMIESMKLFDSICNSK 234 (313)
Q Consensus 157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~--~~~l~e~~~~~~~~~~~~ 234 (313)
.|+.+....+..++..+.||||+|++.+.+.+..++..++++|+|+|.++-. .+..- .....+...+...
T Consensus 241 iTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~gi~~~~qt~e~l~~~~~----- 312 (592)
T 3mca_A 241 VTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FERGFLENGQTREHAYLLRA----- 312 (592)
T ss_dssp ------------------CCEEESSSEEEEECCC-------CCSEEEEEECC---SSTTSCSCSSHHHHHHHHHH-----
T ss_pred eeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccccccchHHHHHHHHHHH-----
Confidence 3444555566667789999999999999999999999999999999998510 00000 1122222222221
Q ss_pred CCCCCc-EEEEeecCCcccc--c-c--cCCcccccC-cCCC-CCCCeEEEEeecccCcCHH
Q psy8318 235 WFMDTS-IILFLNKNDLFQE--K-I--TKSPLTVCF-PEYT-DQKEIYTHFTCATDTSNIQ 287 (313)
Q Consensus 235 ~~~~~p-iilv~NK~Dl~~~--k-~--~~~~l~~~f-~~~~-~~~~~~~~~tSA~~~~~v~ 287 (313)
.++| ++|++||+|+... . . ...++...+ ..+. ....+.++++||++|.||.
T Consensus 313 --lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 313 --LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp --SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred --cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2344 9999999998641 1 1 112233333 2221 1235689999999999997
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.32 E-value=1.1e-11 Score=123.18 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=61.5
Q ss_pred eeecceeEEEEEecC-------ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHH
Q psy8318 156 VKTTGIIETHFTFKD-------LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~-------~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~ 228 (313)
..|++.....+.+++ ..+++|||+|+..+...+..+++.+|++|+|+|.++. ....+...+.
T Consensus 60 giTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~~ 128 (704)
T 2rdo_7 60 GITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVWR 128 (704)
T ss_pred CceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHHH
Confidence 345554444555555 8999999999999999999999999999999999972 1223344444
Q ss_pred HHHhCCCCCCCcEEEEeecCCcccc
Q psy8318 229 SICNSKWFMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 229 ~~~~~~~~~~~piilv~NK~Dl~~~ 253 (313)
.... .+.|+++|+||+|+...
T Consensus 129 ~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 129 QANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHH----cCCCEEEEEeCCCcccc
Confidence 4322 36899999999998653
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.31 E-value=5.5e-12 Score=125.05 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=62.4
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
..|++.....+.+++..+++|||+|+..+...+..+++.+|++|+|+|.++ ... ......+..+..
T Consensus 60 giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~----------g~~-~~~~~~~~~~~~--- 125 (693)
T 2xex_A 60 GITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQS----------GVE-PQTETVWRQATT--- 125 (693)
T ss_dssp ----CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTT----------BSC-HHHHHHHHHHHH---
T ss_pred CceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCC----------CCc-HHHHHHHHHHHH---
Confidence 455665566777888999999999999999999999999999999999987 222 233444554433
Q ss_pred CCCCcEEEEeecCCcccc
Q psy8318 236 FMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~ 253 (313)
.+.|+++|+||+|+...
T Consensus 126 -~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 126 -YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp -TTCCEEEEEECTTSTTC
T ss_pred -cCCCEEEEEECCCcccc
Confidence 36899999999998653
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.30 E-value=5.3e-12 Score=106.38 Aligned_cols=110 Identities=5% Similarity=0.093 Sum_probs=67.4
Q ss_pred eeeeEecCCCcc----------ccccccccc---cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318 172 HFKMFDVGGQRS----------ERKKWIHCF---EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD 238 (313)
Q Consensus 172 ~~~i~D~~Gq~~----------~r~~w~~~~---~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~ 238 (313)
.+.+||++|+.. +++....++ ..++++++++|+++ ..+..+ .. +..++.. .+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~-~~-~~~~~~~---~~ 137 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH----------PLKDLD-QQ-MIEWAVD---SN 137 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HH-HHHHHHH---TT
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC----------CCchhH-HH-HHHHHHH---cC
Confidence 688999999842 122222344 57899999999986 222211 11 1122221 35
Q ss_pred CcEEEEeecCCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 239 TSIILFLNKNDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.|+++++||+|+...... ...+...+.+. ...+..++|||+++.|+.+++++|.+.+.
T Consensus 138 ~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 138 IAVLVLLTKADKLASGARKAQLNMVREAVLAF--NGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG--CSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCeEEEEecccCCCchhHHHHHHHHHHHHHhc--CCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 799999999998643111 11122222211 13467889999999999999999988653
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.27 E-value=1.4e-11 Score=110.72 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=70.5
Q ss_pred cCceeeeEecCCCcc-------------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 169 KDLHFKMFDVGGQRS-------------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~-------------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.+..+.+|||+|... ++..+..++.+++++|+|+|.++-+- ... +...+...+ ..
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-------~~~--~~~~i~~~~-~~-- 196 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------ANS--DALQLAKEV-DP-- 196 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-------TTC--SHHHHHHHH-CS--
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-------hhh--HHHHHHHHh-CC--
Confidence 457899999999753 45667778999999999999865210 001 112333333 22
Q ss_pred CCCCcEEEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeeccc---CcCHHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATD---TSNIQFVFDAVTDVII 298 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~---~~~v~~~f~~i~~~i~ 298 (313)
.+.|+++|+||+|+....-. ...+...+..+ ....+.+..+||.+ +.|+.++++.+.+.+.
T Consensus 197 -~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 197 -EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPL-TLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp -SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCC-TTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred -CCCcEEEEEcCcccCCcchHHHHHHhCCCccC-CCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 46899999999998753211 11111111111 01112345566776 7899999998887664
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.26 E-value=5e-11 Score=118.21 Aligned_cols=115 Identities=13% Similarity=0.204 Sum_probs=76.1
Q ss_pred ceeeeEecCCCcc---ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 171 LHFKMFDVGGQRS---ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 171 ~~~~i~D~~Gq~~---~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+.+|||+|... ....+..|+.++|++|||+|.++ ..+..+ ...+...+.. .+.|+++|+||
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~----------~~s~~e-~~~l~~~l~~---~~~~iiiVlNK 239 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----------PCTLGE-RRYLENYIKG---RGLTVFFLVNA 239 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS----------TTCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC----------ccchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence 5799999999654 45677789999999999999986 333333 2333333332 25789999999
Q ss_pred CCcccccc-cCCc----------cc----ccCcCCCC-----CCCeEEEEeecc--------------cCcCHHHHHHHH
Q psy8318 248 NDLFQEKI-TKSP----------LT----VCFPEYTD-----QKEIYTHFTCAT--------------DTSNIQFVFDAV 293 (313)
Q Consensus 248 ~Dl~~~k~-~~~~----------l~----~~f~~~~~-----~~~~~~~~tSA~--------------~~~~v~~~f~~i 293 (313)
+|+..... .... +. ..+..+.. .....++++||+ ++.|+.++++++
T Consensus 240 ~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L 319 (695)
T 2j69_A 240 WDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSL 319 (695)
T ss_dssp GGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHH
T ss_pred cccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHH
Confidence 99865421 1110 11 01111100 123458999999 999999999999
Q ss_pred HHHHHH
Q psy8318 294 TDVIIK 299 (313)
Q Consensus 294 ~~~i~~ 299 (313)
.+.+..
T Consensus 320 ~~~l~~ 325 (695)
T 2j69_A 320 NTFLTR 325 (695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.24 E-value=1.8e-11 Score=112.39 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=73.8
Q ss_pred cCceeeeEecCCCccc-------------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 169 KDLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~-------------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
....+.+|||+|+... +.+...|+.+++++|+|+|.++-+ ....++..++..+.
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~---------~~~~~~~~l~~~~~---- 200 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD---- 200 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC---------GGGCHHHHHHHHSC----
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC---------cCCHHHHHHHHHhc----
Confidence 3568999999998776 667778899999999999987521 11133444444431
Q ss_pred CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
..+.|+++|+||+|+..+.....++.+. +....++.++.+++..+.++.+.+.+.....
T Consensus 201 ~~~~~~i~V~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 201 PSGDRTFGVLTKIDLMDKGTDAVEILEG---RSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp TTCTTEEEEEECGGGCCTTCCSHHHHTT---SSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred ccCCCEEEEEeCCccCCCcccHHHHHcC---ccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 2467999999999987542211111111 1122445678899999988887666544433
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.24 E-value=1.7e-11 Score=114.24 Aligned_cols=115 Identities=11% Similarity=0.168 Sum_probs=72.9
Q ss_pred ceeeeEecCCCcc----ccccccc---cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318 171 LHFKMFDVGGQRS----ERKKWIH---CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL 243 (313)
Q Consensus 171 ~~~~i~D~~Gq~~----~r~~w~~---~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil 243 (313)
..+.+||++|... .+.+... ..+.++.+++++|+++ . ....+....+.+..+ .+.+...|.+|
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~--~------~~~~ls~g~~el~~l--a~aL~~~P~IL 274 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD--E------PLKTLETLRKEVGAY--DPALLRRPSLV 274 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTS--C------HHHHHHHHHHHHHHH--CHHHHHSCEEE
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCcc--C------CHHHHHHHHHHHHHH--hHHhhcCCEEE
Confidence 7889999999742 2222222 3457999999999971 1 122333333333222 11223579999
Q ss_pred EeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318 244 FLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA 300 (313)
Q Consensus 244 v~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~ 300 (313)
++||+|+... .....+.+.+. ..++.++.+||++++|+.+++++|.+.+...
T Consensus 275 VlNKlDl~~~-~~~~~l~~~l~----~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 275 ALNKVDLLEE-EAVKALADALA----REGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp EEECCTTSCH-HHHHHHHHHHH----TTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EEECCChhhH-HHHHHHHHHHH----hcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 9999998754 11122222221 2345789999999999999999999988653
No 189
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.24 E-value=2.8e-11 Score=106.60 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=48.0
Q ss_pred EEEecCceeeeEecCCCcccccccc-------cc--ccCCcEEEEEEecCCcccccccccccccHHH-HHHHHHHHHhC-
Q psy8318 165 HFTFKDLHFKMFDVGGQRSERKKWI-------HC--FEGVTAIIFCVALSGYDSVLAEDEEMNRMIE-SMKLFDSICNS- 233 (313)
Q Consensus 165 ~~~~~~~~~~i~D~~Gq~~~r~~w~-------~~--~~~~~~iifv~dls~~d~~~~e~~~~~~l~e-~~~~~~~~~~~- 233 (313)
.+..++..+.+|||+|+..+..... .| ..+++++|||+|++.. ++.+ ...++..+...
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-----------~~~~~~~~~~~~l~~~~ 149 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-----------RVDNLDKLVAKAITDSF 149 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-----------CCCHHHHHHHHHHHHHH
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-----------cCCHHHHHHHHHHHHHh
Confidence 4455778999999999976653322 12 3479999999998751 2221 12333333221
Q ss_pred CCCCCCcEEEEeecCCccc
Q psy8318 234 KWFMDTSIILFLNKNDLFQ 252 (313)
Q Consensus 234 ~~~~~~piilv~NK~Dl~~ 252 (313)
......|+++|+||+|+..
T Consensus 150 ~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 150 GKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp CGGGGGGEEEEEECCSCCC
T ss_pred CcccccCEEEEEECcccCC
Confidence 0001269999999999853
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.16 E-value=4.5e-12 Score=113.57 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=55.9
Q ss_pred ceeeeEecCCC-------cccccccc-------ccccC-------------CcEEEEEEecCCcccccccccccccHHHH
Q psy8318 171 LHFKMFDVGGQ-------RSERKKWI-------HCFEG-------------VTAIIFCVALSGYDSVLAEDEEMNRMIES 223 (313)
Q Consensus 171 ~~~~i~D~~Gq-------~~~r~~w~-------~~~~~-------------~~~iifv~dls~~d~~~~e~~~~~~l~e~ 223 (313)
..+++||++|+ +.++.++. .|+++ +++++|+.+.+. .+++..
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-----------~~Ld~~ 144 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPL 144 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-----------SSCCHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-----------cCCCHH
Confidence 57899999998 55666654 55433 234666666542 112111
Q ss_pred -HHHHHHHHhCCCCCCCcEEEEeecCCccccc-cc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 224 -MKLFDSICNSKWFMDTSIILFLNKNDLFQEK-IT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 224 -~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.+++..+. .+.|+++|+||.|+.... +. ...+.+... ..++.++++||+++ |+.++|.++.+.+..
T Consensus 145 ~~~~l~~l~-----~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 145 DVAFMKAIH-----NKVNIVPVIAKADTLTLKERERLKKRILDEIE----EHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHT-----TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH----HTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHH-----hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH----HcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 23333331 357999999999986432 11 112222222 23567899999999 999999999998864
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.13 E-value=4.3e-11 Score=109.54 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=66.2
Q ss_pred CceeeeEecCCCc-------------cccccccccccCCcEEEE-EEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 170 DLHFKMFDVGGQR-------------SERKKWIHCFEGVTAIIF-CVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 170 ~~~~~i~D~~Gq~-------------~~r~~w~~~~~~~~~iif-v~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
...+.+|||+|.. ..+.++..|+.+++.+|+ |+|.+. + -.-.++..+++.+.
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~---------~~~~~~~~i~~~~~---- 194 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-D---------LANSDALKVAKEVD---- 194 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-C---------GGGCHHHHHHHHHC----
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-c---------cchhHHHHHHHHhC----
Confidence 5789999999963 234566677877766555 444432 1 11112333444442
Q ss_pred CCCCcEEEEeecCCcccccccCCcc-cc-cCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPL-TV-CFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l-~~-~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
..+.|+++|+||+|+..+.....++ .. .++ ...+ ..++.+||+++.|+.++++++.+
T Consensus 195 ~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~---l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 195 PQGQRTIGVITKLDLMDEGTDARDVLENKLLP---LRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSC---CTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cCCCceEEEeccccccCcchhHHHHHhCCccc---ccCCceEEEeCCcccccccccHHHHHHH
Confidence 1468999999999987532111111 11 111 1123 35678999999999999998876
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.09 E-value=3e-11 Score=110.72 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=70.1
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+..+.+|||+|... -.......+|++|+|+|.+..++. . .+ . ....+.|+++|+||+
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~----------~-------~l-~-~~~~~~p~ivVlNK~ 227 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL----------Q-------GI-K-KGVLELADIVVVNKA 227 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT----------T-------TC-C-TTSGGGCSEEEEECC
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH----------H-------HH-H-HhHhhcCCEEEEECC
Confidence 578899999999432 233345889999999998763211 0 00 0 112346999999999
Q ss_pred Ccccccc---cCCcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 249 DLFQEKI---TKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 249 Dl~~~k~---~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
|+....- ....+...+..+. ......++.+||++|+|+.+++++|.+.+..
T Consensus 228 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 228 DGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9864311 1112222221110 1124568999999999999999999987754
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.09 E-value=1.8e-10 Score=116.47 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=54.6
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
+..+++|||+|+..+...|..+++.++++|+|+|.++ ....+ ....+..... .+.|+++|+||+|
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~----------g~~~q-t~~~~~~~~~----~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE----------GVCVQ-TETVLRQALG----ERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT----------BSCHH-HHHHHHHHHH----TTCEEEEEEECHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH----cCCCeEEEEECCC
Confidence 5789999999999999999999999999999999997 33333 3344444433 3689999999999
Q ss_pred ccc
Q psy8318 250 LFQ 252 (313)
Q Consensus 250 l~~ 252 (313)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 863
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.08 E-value=1.8e-10 Score=97.78 Aligned_cols=106 Identities=10% Similarity=0.028 Sum_probs=66.4
Q ss_pred cCceeeeEecCCCccccccccccc-cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCF-EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~-~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK 247 (313)
.+..+.+|||+|+... +.++ ...+.+++|+|.++.+ ... ..+... .+.|+++++||
T Consensus 107 ~~~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~---------~~~----~~~~~~------~~~~~iiv~NK 163 (221)
T 2wsm_A 107 SDCDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGD---------DVV----EKHPEI------FRVADLIVINK 163 (221)
T ss_dssp TTCSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCT---------THH----HHCHHH------HHTCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcc---------hhh----hhhhhh------hhcCCEEEEec
Confidence 4578899999996211 1122 3578899999998731 111 011111 13689999999
Q ss_pred CCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 248 NDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 248 ~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
+|+.... .....+.+.+..+ ...+.++++||++|.|+.++|+++.+.+..
T Consensus 164 ~Dl~~~~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 164 VALAEAVGADVEKMKADAKLI--NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp GGGHHHHTCCHHHHHHHHHHH--CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred ccCCcchhhHHHHHHHHHHHh--CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 9986531 1112222222222 134678999999999999999999987753
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.05 E-value=1.9e-10 Score=100.42 Aligned_cols=114 Identities=13% Similarity=0.006 Sum_probs=67.3
Q ss_pred ceeeeEecCCCcccccccc------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318 171 LHFKMFDVGGQRSERKKWI------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF 244 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~~w~------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv 244 (313)
+.+.+|||+|+......+. .++.+ +.+|+++|.+.... ...+............ ..+.|+++|
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~---~~~~p~~iv 177 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDL---RLGATTIPA 177 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHH---HHTSCEEEE
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhc---ccCCCeEEE
Confidence 5789999999976433221 24567 89999999875210 1112211111111111 125799999
Q ss_pred eecCCcccccccCCcccc----------c------------------CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 245 LNKNDLFQEKITKSPLTV----------C------------------FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 245 ~NK~Dl~~~k~~~~~l~~----------~------------------f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
+||+|+....- ...+.+ . ..++ .....++++||++++|+.+++++|.+.
T Consensus 178 ~NK~D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~SA~~~~gi~~l~~~i~~~ 254 (262)
T 1yrb_A 178 LNKVDLLSEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV--LPPVRVLYLSAKTREGFEDLETLAYEH 254 (262)
T ss_dssp ECCGGGCCHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--SCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred Eeccccccccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh--cCcccceEEEecCcccHHHHHHHHHHH
Confidence 99999864320 000000 0 0111 122357899999999999999999887
Q ss_pred HH
Q psy8318 297 II 298 (313)
Q Consensus 297 i~ 298 (313)
+.
T Consensus 255 ~~ 256 (262)
T 1yrb_A 255 YC 256 (262)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 196
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.04 E-value=9.1e-10 Score=106.22 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=64.6
Q ss_pred eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318 155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK 234 (313)
Q Consensus 155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~ 234 (313)
|.-|+......+.+++..++++||+|+..|..--...++-+|++|+|+|..+ --...+...|+....
T Consensus 84 RGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~qT~~v~~~a~~-- 150 (548)
T 3vqt_A 84 RGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEAQTRKLMDVCRM-- 150 (548)
T ss_dssp ----CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCHHHHHHHHHHHH--
T ss_pred CCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------CcccccHHHHHHHHH--
Confidence 4445555566788999999999999999888777777889999999999996 344556667766654
Q ss_pred CCCCCcEEEEeecCCcccc
Q psy8318 235 WFMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~~~ 253 (313)
.+.|.++|.||+|....
T Consensus 151 --~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 151 --RATPVMTFVNKMDREAL 167 (548)
T ss_dssp --TTCCEEEEEECTTSCCC
T ss_pred --hCCceEEEEecccchhc
Confidence 46899999999998653
No 197
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.00 E-value=1.9e-10 Score=106.69 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=24.5
Q ss_pred ceeeeEecCCCcc----cccc---ccccccCCcEEEEEEecCCc
Q psy8318 171 LHFKMFDVGGQRS----ERKK---WIHCFEGVTAIIFCVALSGY 207 (313)
Q Consensus 171 ~~~~i~D~~Gq~~----~r~~---w~~~~~~~~~iifv~dls~~ 207 (313)
..+.+|||+|+.. .+.+ +..++++++++++|+|.++-
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 5799999999853 2223 33567999999999999873
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.98 E-value=4.9e-10 Score=95.48 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=40.8
Q ss_pred CcEEEEeecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 239 TSIILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 239 ~piilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.|.++++||+|+..+. .....+...+..+ ...+.++++||++|.|+.++|+++.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRI--NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHH--CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHh--CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 6899999999986532 1112222222211 134678999999999999999999887753
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=99.25 Aligned_cols=108 Identities=9% Similarity=0.047 Sum_probs=64.6
Q ss_pred cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~ 248 (313)
.+..+.++||+|.. .-+....+.++.+++|+|.++. ..... ....+ .+.|.++++||+
T Consensus 165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~----------~~~~~---i~~~i------l~~~~ivVlNK~ 222 (349)
T 2www_A 165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGG----------DELQG---IKRGI------IEMADLVAVTKS 222 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCC
T ss_pred CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcc----------hhHHH---hHHHH------HhcCCEEEEeee
Confidence 57889999999953 2244567899999999998862 11110 00111 235889999999
Q ss_pred Ccccccc---cCCcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 249 DLFQEKI---TKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 249 Dl~~~k~---~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
|+....- ....+...+.... ......++.+||++|+|+.+++++|.+.+.
T Consensus 223 Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 223 DGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9864210 0111211111000 012346788999999999999999988763
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=3.3e-10 Score=105.57 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=43.7
Q ss_pred ceeeeEecCCCccccc---cc----------------------cccccCCc--EEEEEEecCCcccccccccccccHHHH
Q psy8318 171 LHFKMFDVGGQRSERK---KW----------------------IHCFEGVT--AIIFCVALSGYDSVLAEDEEMNRMIES 223 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~---~w----------------------~~~~~~~~--~iifv~dls~~d~~~~e~~~~~~l~e~ 223 (313)
..+++||++|+..... .| ..++.++. +++|+.+.+. ..+...
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-----------~~L~~~ 156 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-----------HGLKPL 156 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-----------CSCCHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-----------cCCCHH
Confidence 4789999999865311 11 22455544 5666665541 122222
Q ss_pred -HHHHHHHHhCCCCCCCcEEEEeecCCccccc-ccC--CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318 224 -MKLFDSICNSKWFMDTSIILFLNKNDLFQEK-ITK--SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV 296 (313)
Q Consensus 224 -~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~~--~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~ 296 (313)
..++..+. .++|+|+|+||+|+.... +.. ..+.+.+. ..++.++++||++++++.++|..+.+.
T Consensus 157 d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~----~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 157 DIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ----EHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH----HHTCCCCCCC-----------------
T ss_pred HHHHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH----HcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 24555542 268999999999986432 111 12222221 135667889999999999888777654
No 201
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=8.7e-09 Score=94.01 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=29.4
Q ss_pred CceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCC
Q psy8318 170 DLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSG 206 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~ 206 (313)
...+++|||+|+.... ..+..++++++++++|+|+++
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 3679999999997642 234456899999999999987
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.85 E-value=3.6e-09 Score=102.15 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=49.4
Q ss_pred ceeeeEecCCCcc-----------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318 171 LHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT 239 (313)
Q Consensus 171 ~~~~i~D~~Gq~~-----------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~ 239 (313)
..+.+|||+|... +...+..++.+++++|||+|.++. ....+...+++.+.. .+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL----------EISDEFSEAIGALRG----HED 219 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC----------CCCHHHHHHHHHTTT----CGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC----------CCCHHHHHHHHHHHh----cCC
Confidence 4789999999864 445667788999999999999862 223334444444321 357
Q ss_pred cEEEEeecCCccc
Q psy8318 240 SIILFLNKNDLFQ 252 (313)
Q Consensus 240 piilv~NK~Dl~~ 252 (313)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 9999999999864
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.79 E-value=7.3e-09 Score=94.95 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=29.4
Q ss_pred CceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCC
Q psy8318 170 DLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSG 206 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~ 206 (313)
+..+++|||+|+.... ..+..+++.++++++|+|.++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4679999999987542 234456899999999999986
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.79 E-value=9.3e-09 Score=93.54 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=66.3
Q ss_pred ecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 168 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 168 ~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK 247 (313)
.++..+.+|||+|...... .....+|++++|+|.+..+.. ..+.. .. .+.|.++|+||
T Consensus 146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK 203 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINK 203 (341)
T ss_dssp HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECC
T ss_pred ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEEC
Confidence 3578999999999654322 245899999999999864321 00100 01 13588999999
Q ss_pred CCccccc-ccC--CcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 248 NDLFQEK-ITK--SPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 248 ~Dl~~~k-~~~--~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
+|+.... ... .++...+..+. ......++++||++|+|+.+++++|.+.+.
T Consensus 204 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9986531 111 12222111110 111346789999999999999999988764
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.70 E-value=6.9e-09 Score=101.98 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=61.9
Q ss_pred eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
.-|+-.....+.+++..++++||+|+..|..--...++-+|++|+|+|..+- -...+...|+....
T Consensus 52 GITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G-----------V~~qT~~v~~~a~~--- 117 (638)
T 3j25_A 52 GITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG-----------VQAQTRILFHALRK--- 117 (638)
T ss_dssp SSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT-----------TCSHHHHHHHHHHH---
T ss_pred CCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC-----------CcHHHHHHHHHHHH---
Confidence 3444444456677899999999999998887777778899999999999862 22334555555543
Q ss_pred CCCCcEEEEeecCCcccc
Q psy8318 236 FMDTSIILFLNKNDLFQE 253 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~ 253 (313)
.+.|.++|.||+|....
T Consensus 118 -~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 118 -MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp -HTCSCEECCEECCSSSC
T ss_pred -cCCCeEEEEeccccccC
Confidence 35799999999997654
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.63 E-value=2.6e-08 Score=89.00 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=67.5
Q ss_pred CCccccccccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccc-c-
Q psy8318 180 GQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI-T- 256 (313)
Q Consensus 180 Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~-~- 256 (313)
.+++++.+...+++++|++++|+|+++ +. ++.....|+..+-. .++|++||+||+|+..+.. .
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~----------p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~ 130 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKM----------PEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKE 130 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTT----------TTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCC----------CCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHH
Confidence 478888888899999999999999997 32 44433344443322 4689999999999865321 1
Q ss_pred CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318 257 KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT 294 (313)
Q Consensus 257 ~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~ 294 (313)
..+..+.+ ...+..++++||++|.|+++++..+.
T Consensus 131 ~~~~~~~~----~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 131 LERWISIY----RDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHHHH----HHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 11222221 11345789999999999999998765
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.55 E-value=2.2e-07 Score=92.19 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=66.9
Q ss_pred CceeeeEecCCCccc---------cccc----cccc-cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318 170 DLHFKMFDVGGQRSE---------RKKW----IHCF-EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~---------r~~w----~~~~-~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~ 235 (313)
...+.++||+|-..- ...| ..|. ..++.+++|+|.+. .-.-.+...+...+..
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~----------~~~~~d~l~ll~~L~~--- 215 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEVDP--- 215 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS----------CSSSCHHHHHHHHHCT---
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC----------CcchhHHHHHHHHHHh---
Confidence 457999999995431 1223 2333 57899999999886 2222233344444422
Q ss_pred CCCCcEEEEeecCCcccccccCCcccc--cCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHH
Q psy8318 236 FMDTSIILFLNKNDLFQEKITKSPLTV--CFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 236 ~~~~piilv~NK~Dl~~~k~~~~~l~~--~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
.+.|+++|+||+|+..+.-....+.. .++ ...+ ..++.+||++|.|+.++++.+.+
T Consensus 216 -~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~---l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 216 -QGQRTIGVITKLDLMDEGTDARDVLENKLLP---LRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp -TCSSEEEEEECTTSSCTTCCSHHHHTTCSSC---CSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred -cCCCEEEEEeCcccCCcchhhHHHHHHHhhh---hhccCCceEEecccccccchhHHHHHHH
Confidence 36899999999998653211111111 111 1112 35678999999999998888876
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.52 E-value=1.2e-08 Score=93.76 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=66.7
Q ss_pred CCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCc
Q psy8318 180 GQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSP 259 (313)
Q Consensus 180 Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~ 259 (313)
.++.+++.+.+++++++++++|+|+++++ ..+...+.+.+ .+.|+++|+||+|+..+......
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------------~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------------GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------------HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------------ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHH
Confidence 56789999999999999999999999832 11112223322 36899999999998654322112
Q ss_pred cccc----CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 260 LTVC----FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 260 l~~~----f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
+.+. +... ..+...++.+||++|.|+.++++++.+..
T Consensus 118 ~~~~l~~~~~~~-g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQL-GLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHT-TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2221 1111 11122688999999999999999987643
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.41 E-value=4.6e-07 Score=82.14 Aligned_cols=109 Identities=9% Similarity=0.016 Sum_probs=62.3
Q ss_pred ecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318 168 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK 247 (313)
Q Consensus 168 ~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK 247 (313)
..+..+.++||+|...- .....+.++.+++|+|.+..+ .+.. + . ....+.|.++++||
T Consensus 145 ~~~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~----------~~~~----i----~-~~i~~~~~ivvlNK 202 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGD----------ELQG----I----K-KGIFELADMIAVNK 202 (337)
T ss_dssp HTTCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC--------------------C----C-TTHHHHCSEEEEEC
T ss_pred cCCCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcc----------cHHH----H----H-HHHhccccEEEEEc
Confidence 36789999999997432 123457899999999986421 1000 0 0 00012356777899
Q ss_pred CCccc-cccc---CCcccccCcCCCC---CCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318 248 NDLFQ-EKIT---KSPLTVCFPEYTD---QKEIYTHFTCATDTSNIQFVFDAVTDVII 298 (313)
Q Consensus 248 ~Dl~~-~k~~---~~~l~~~f~~~~~---~~~~~~~~tSA~~~~~v~~~f~~i~~~i~ 298 (313)
.|+.. .... ...+...+..... .....++.+||+++.|+.++++.|.+...
T Consensus 203 ~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 203 ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99642 1111 1111111111100 01224677999999999999999988653
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.39 E-value=1.2e-07 Score=87.10 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=67.0
Q ss_pred CCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCC
Q psy8318 179 GGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKS 258 (313)
Q Consensus 179 ~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~ 258 (313)
..|+.+++.+.+++++++++++|+|+++++... ...+ ...+ .+.|+++|+||+|+..+.....
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~l-------~~~l-----~~~piilV~NK~DLl~~~~~~~ 118 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPGL-------PRFA-----ADNPILLVGNKADLLPRSVKYP 118 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSSH-------HHHC-----TTSCEEEEEECGGGSCTTCCHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhHH-------HHHh-----CCCCEEEEEEChhcCCCccCHH
Confidence 468899999999999999999999999965211 1111 2221 3689999999999875432222
Q ss_pred ccccc----CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318 259 PLTVC----FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297 (313)
Q Consensus 259 ~l~~~----f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i 297 (313)
.+.+. +... ..+...++.+||++|.|+.++++.+.+..
T Consensus 119 ~~~~~l~~~~~~~-g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 119 KLLRWMRRMAEEL-GLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHTT-TCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 22222 2211 11123688999999999999999987654
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.37 E-value=6.3e-07 Score=82.54 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=25.7
Q ss_pred ceeeeEecCCCccccc-------cccccccCCcEEEEEEecCCc
Q psy8318 171 LHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSGY 207 (313)
Q Consensus 171 ~~~~i~D~~Gq~~~r~-------~w~~~~~~~~~iifv~dls~~ 207 (313)
..+++||++|+...+. .|..++++++++++|+|+++-
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 5689999999876443 678889999999999999863
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.31 E-value=2e-06 Score=85.60 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=54.9
Q ss_pred CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318 170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249 (313)
Q Consensus 170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D 249 (313)
++.++++||+|+..|..--...++-+|++|+|+|..+ --...+...|+.... .+.|.++|.||+|
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-----------GV~~qT~~v~~~a~~----~~lp~i~~iNKiD 148 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-----------GVEPQSETVWRQANK----YGVPRIVYVNKMD 148 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHH----HTCCEEEEEECSS
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-----------CCchhHHHHHHHHHH----cCCCeEEEEcccc
Confidence 5789999999999887766667888999999999996 333455666776654 3689999999999
Q ss_pred cccc
Q psy8318 250 LFQE 253 (313)
Q Consensus 250 l~~~ 253 (313)
....
T Consensus 149 r~~a 152 (709)
T 4fn5_A 149 RQGA 152 (709)
T ss_dssp STTC
T ss_pred ccCc
Confidence 7653
No 213
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.10 E-value=5.3e-06 Score=75.99 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=48.7
Q ss_pred EEEEEecCceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh-CC
Q psy8318 163 ETHFTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN-SK 234 (313)
Q Consensus 163 ~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~-~~ 234 (313)
...+.+.+.++++.||+|-..-. +......+.||++++|+|.++ +-+ +...+..++.. ..
T Consensus 111 ~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~----------p~~--~~~~i~~EL~~~~~ 178 (376)
T 4a9a_A 111 PGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK----------PLH--HKQIIEKELEGVGI 178 (376)
T ss_dssp EEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS----------HHH--HHHHHHHHHHHTTE
T ss_pred eEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc----------cHH--HHHHHHHHHHHhhH
Confidence 34456788999999999964321 122344678999999999986 221 11112222211 23
Q ss_pred CCCCCcEEEEeecCCcc
Q psy8318 235 WFMDTSIILFLNKNDLF 251 (313)
Q Consensus 235 ~~~~~piilv~NK~Dl~ 251 (313)
.+.+.|.++++||.|..
T Consensus 179 ~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 179 RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EETCCCCCEEEEECSSS
T ss_pred hhccCChhhhhhHhhhh
Confidence 34567889999999964
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.89 E-value=1e-05 Score=76.92 Aligned_cols=108 Identities=12% Similarity=0.164 Sum_probs=60.1
Q ss_pred cCceeeeEecCCCcccc-cccccc-----ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE-
Q psy8318 169 KDLHFKMFDVGGQRSER-KKWIHC-----FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI- 241 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r-~~w~~~-----~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi- 241 (313)
.+..+.|+||+|..... ..+... ...++.+++|+|.+. ... +......+.. ..|+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~----------g~~---~~~~a~~~~~-----~~~i~ 243 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI----------GQA---CEAQAKAFKD-----KVDVA 243 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC----------CTT---HHHHHHHHHH-----HHCCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc----------ccc---HHHHHHHHHh-----hcCce
Confidence 56789999999975422 222211 226899999999986 111 2222222211 1465
Q ss_pred EEEeecCCccccc---cc-----CCcc-----cccCcCCCCCCCeEEEEeecccCcC-HHHHHHHHHHH
Q psy8318 242 ILFLNKNDLFQEK---IT-----KSPL-----TVCFPEYTDQKEIYTHFTCATDTSN-IQFVFDAVTDV 296 (313)
Q Consensus 242 ilv~NK~Dl~~~k---~~-----~~~l-----~~~f~~~~~~~~~~~~~tSA~~~~~-v~~~f~~i~~~ 296 (313)
.+|+||.|..... +. ..++ .+.+.++.. .-...++||..|.| +.++++++.+.
T Consensus 244 gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~--f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 244 SVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEP--FKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEEC--CTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhc--cCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8899999975321 00 0011 111111100 00124579999999 99998888765
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.68 E-value=6.5e-05 Score=69.16 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=28.1
Q ss_pred ceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCC
Q psy8318 171 LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSG 206 (313)
Q Consensus 171 ~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~ 206 (313)
..+.+||++|... ....+..++++++++++|+|+++
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3578999999532 34466777899999999999976
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.65 E-value=1.5e-05 Score=70.24 Aligned_cols=101 Identities=12% Similarity=0.127 Sum_probs=64.3
Q ss_pred ecCCCc-cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccc
Q psy8318 177 DVGGQR-SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI 255 (313)
Q Consensus 177 D~~Gq~-~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~ 255 (313)
..+|+. ..++.....++.+++|++|+|..+ +..... ..+++++ .+.|.++++||+|+.....
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~----------p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~ 67 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARI----------PMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV 67 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTS----------TTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHH
Confidence 456664 444555667899999999999987 222111 1223332 4689999999999875311
Q ss_pred cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318 256 TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299 (313)
Q Consensus 256 ~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~ 299 (313)
.....+++. ..++.++++||+++.|+.++++.+.+.+..
T Consensus 68 -~~~~~~~~~----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 68 -TQQWKEHFE----NQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp -HHHHHHHHH----TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred -HHHHHHHHH----hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 111222332 134568899999999999999998877654
No 217
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.96 E-value=0.00033 Score=57.31 Aligned_cols=30 Identities=40% Similarity=0.405 Sum_probs=20.1
Q ss_pred CcchhhhhccceEEEEcCCCCchhHHHHHHH
Q psy8318 1 MPMVQWQEREVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 1 ~~~~~~~~~~~killlG~~~sGKst~~kq~r 31 (313)
|+|.+-.++. .++++|.+||||||+++.+-
T Consensus 1 ~~m~~i~~g~-~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 1 MNMTDDLGGN-ILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp -----CCTTE-EEEEEECTTSCHHHHHHHHH
T ss_pred CCccCCCCCe-EEEEECCCCCCHHHHHHHHH
Confidence 5555543333 58999999999999999873
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.96 E-value=0.0016 Score=60.73 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.2
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
..-|+++|.+||||||++..+-
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 5678999999999999988873
No 219
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.95 E-value=0.00022 Score=67.37 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=27.6
Q ss_pred ceeeeEecCCC--ccccccc--------cccccCCcEEEEEEecCC
Q psy8318 171 LHFKMFDVGGQ--RSERKKW--------IHCFEGVTAIIFCVALSG 206 (313)
Q Consensus 171 ~~~~i~D~~Gq--~~~r~~w--------~~~~~~~~~iifv~dls~ 206 (313)
....+||..|+ ...+..| ..++.++.+.++|+|.++
T Consensus 87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn 132 (469)
T 1bif_A 87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATN 132 (469)
T ss_dssp CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34578999998 3456666 667777888899999986
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.76 E-value=0.0063 Score=56.67 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=39.4
Q ss_pred cCceeeeEecCCCccccc-cc-----cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC-c-
Q psy8318 169 KDLHFKMFDVGGQRSERK-KW-----IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT-S- 240 (313)
Q Consensus 169 ~~~~~~i~D~~Gq~~~r~-~w-----~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~-p- 240 (313)
.+..+.++||+|...... +. ......++.++||+|.+. .. ++......+ +. .. |
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~----------g~---~~~~~~~~~-~~----~~~~i 240 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTI----------GQ---QAGIQAKAF-KE----AVGEI 240 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGG----------GG---GHHHHHHHH-HT----TSCSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccc----------cH---HHHHHHHHH-hh----cccCC
Confidence 457889999999754211 11 111236899999999875 21 223333222 21 23 5
Q ss_pred EEEEeecCCcc
Q psy8318 241 IILFLNKNDLF 251 (313)
Q Consensus 241 iilv~NK~Dl~ 251 (313)
..+|+||.|..
T Consensus 241 ~gvVlnK~D~~ 251 (432)
T 2v3c_C 241 GSIIVTKLDGS 251 (432)
T ss_dssp EEEEEECSSSC
T ss_pred eEEEEeCCCCc
Confidence 78999999964
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.53 E-value=0.0033 Score=58.52 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.8
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
..-|+++|.+||||||++..+-
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999998874
No 222
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.45 E-value=0.0014 Score=53.34 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
++.++|.+||||||+++.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999863
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.43 E-value=0.0013 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~~ 35 (313)
.|+++|.+||||||+.+.+.-..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999854443
No 224
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.31 E-value=0.0016 Score=52.48 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=16.6
Q ss_pred eEEEEcCCCCchhHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQ 29 (313)
Q Consensus 12 killlG~~~sGKst~~kq 29 (313)
-++++|.+||||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999997
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.30 E-value=0.00027 Score=61.50 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=53.4
Q ss_pred ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCc
Q psy8318 186 KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFP 265 (313)
Q Consensus 186 ~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~ 265 (313)
+........+|+||.|+|+.+- ...... .++ + . +.|.++++||+|+..... .....+++.
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P----------~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~-~~~~~~~~~ 72 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAP----------FATSAY--GVD-F-----S-RKETIILLNKVDIADEKT-TKKWVEFFK 72 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTST----------TTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHH-HHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEeeCCCC----------CcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHH-HHHHHHHHH
Confidence 3445567899999999999862 111100 001 1 1 689999999999875321 112222332
Q ss_pred CCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318 266 EYTDQKEIYTHFTCATDTSNIQFVFDAVTD 295 (313)
Q Consensus 266 ~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~ 295 (313)
. .+..+ .+||+++.|+.++++++.+
T Consensus 73 ~----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 K----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp H----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred H----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 1 23346 8999999999998877654
No 226
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.26 E-value=0.002 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
..++++|.+||||||+.+.+.-..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999975433
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.23 E-value=0.0021 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-++++|++||||||+++.+.-.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999997543
No 228
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.14 E-value=0.0032 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
.++++|++||||||+++.+--++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999985444
No 229
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.13 E-value=0.0025 Score=52.45 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-+.++|++||||||+++.+.-+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999987433
No 230
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.09 E-value=0.0027 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHh
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~ 34 (313)
+.++|++||||||+++.+.-++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6799999999999999975443
No 231
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.07 E-value=0.0029 Score=50.32 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-|++.|.+||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998
No 232
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.03 E-value=0.0032 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
++|++.|.+||||||+.+.+.-
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999843
No 233
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.03 E-value=0.0031 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
.|++.|.+||||||+.+.+.-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998533
No 234
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.02 E-value=0.0031 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-|++.|.+||||||+.+.+.-
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999753
No 235
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.98 E-value=0.0034 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
....|.++|.+|||||||++.+--++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999985444
No 236
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.98 E-value=0.0035 Score=52.27 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
++|++.|.+||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999984
No 237
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.97 E-value=0.0034 Score=51.13 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|.+||||||+++.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 46899999999999999974
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.97 E-value=0.00073 Score=60.05 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=51.3
Q ss_pred cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccc---cCCccccc
Q psy8318 187 KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI---TKSPLTVC 263 (313)
Q Consensus 187 ~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~---~~~~l~~~ 263 (313)
++.....++|.+++|+|+.+-+ .+.. .++.++..-...++|.+||+||+|+..... ....+.+.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~---------~~~~----~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~ 145 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPS---------FSTA----LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAED 145 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTT---------CCHH----HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHhCCEEEEEEeCCCCC---------CCHH----HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHH
Confidence 4445678999999999998511 1111 222222111114678999999999876421 01222333
Q ss_pred CcCCCCCCCeEEEEeecccCcCHHHHHH
Q psy8318 264 FPEYTDQKEIYTHFTCATDTSNIQFVFD 291 (313)
Q Consensus 264 f~~~~~~~~~~~~~tSA~~~~~v~~~f~ 291 (313)
+. ..+..++.+||.++.|+.+++.
T Consensus 146 y~----~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 146 YR----NIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HH----HHTCCEEECCHHHHTTCTTTGG
T ss_pred HH----hCCCeEEEEecCCCCCHHHHHh
Confidence 21 1234678899998888766554
No 239
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.95 E-value=0.0037 Score=52.33 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
+...|++.|.+||||||+.+.+.-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999985433
No 240
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.92 E-value=0.004 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCchhHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~ 32 (313)
+...|++.|.+||||||+.+.+.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999854
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.92 E-value=0.0039 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...|++.|.+||||||+.+.+.-
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999853
No 242
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.91 E-value=0.0053 Score=50.02 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
.+...|++.|.+||||||+.+.+.-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999985433
No 243
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.90 E-value=0.0038 Score=50.77 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~ 33 (313)
+...|++.|.+||||||+.+.+.-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998543
No 244
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.89 E-value=0.0037 Score=53.05 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|++|||||||++++-
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 245
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.88 E-value=0.0052 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~~ 35 (313)
+.|+++|++||||+|..+.+---|+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3689999999999999999854443
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.88 E-value=0.0039 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
..++++|++||||||+++.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999753
No 247
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.88 E-value=0.0037 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
.+++.++|.+|||||||++-+-
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999864
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.87 E-value=0.0044 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
-|++.|.+||||||+.+.+.-..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999985433
No 249
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.86 E-value=0.004 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
--|+++|.+||||||+++.+.-..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999984333
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.86 E-value=0.0042 Score=49.51 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|+.|||||||+|-+-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999873
No 251
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.85 E-value=0.0042 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCchhHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~ 32 (313)
+...|++.|.+||||||+.+.+.-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.82 E-value=0.0043 Score=51.52 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|.+||||||+++.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47799999999999999874
No 253
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.82 E-value=0.0045 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
.|++.|.+||||||+.+.+.-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999998543
No 254
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.82 E-value=0.0043 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
...++++|.+||||||+++.+-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999974
No 255
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.79 E-value=0.0045 Score=51.04 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
..|++.|.+||||||+.+.+.-.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999985443
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.79 E-value=0.0044 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
.+.++|++||||||+++.+--++
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999874433
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.78 E-value=0.0044 Score=52.19 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-++++|++|||||||++.+.-.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999987543
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.77 E-value=0.0045 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
.-|+++|.+||||||+.+.+.-
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999753
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.77 E-value=0.0063 Score=50.42 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.9
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
....|.++|++||||||+++.+.-+++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344688999999999999999865544
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.72 E-value=0.0057 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
-++++|++||||||+++.+.-.+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999985443
No 261
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.71 E-value=0.0055 Score=50.26 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
|++.|++|||||||++.+.-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999753
No 262
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.71 E-value=0.0051 Score=50.68 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
+|.+.|.+||||||+.+.+.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999865
No 263
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.70 E-value=0.0052 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
.|++.|.+||||||+.+.+.--
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998543
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.70 E-value=0.0066 Score=49.99 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHhcCC
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIHETG 37 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~~~~ 37 (313)
-.|+++|.+||||||+.+.+.-..+-.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 378999999999999999985444433
No 265
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.69 E-value=0.0053 Score=50.35 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.9
Q ss_pred hhccceEEEEcCCCCchhHHHHHHHHH
Q psy8318 7 QEREVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 7 ~~~~~killlG~~~sGKst~~kq~r~~ 33 (313)
..+...|.+.|.+||||||+.+.+.-.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344567999999999999999998644
No 266
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.66 E-value=0.007 Score=51.67 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.5
Q ss_pred hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
.+..+|++.|++||||||+.+.+.--+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999985333
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.65 E-value=0.0052 Score=51.40 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|.+|||||||++++-
T Consensus 27 ~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999984
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.65 E-value=0.0058 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.8
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...|++.|.+||||||+.+.+.-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999753
No 269
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.65 E-value=0.0071 Score=48.90 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~~ 35 (313)
.|++.|.+||||||+.+.+.-..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999865443
No 270
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.64 E-value=0.0071 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
++|++.|.+||||||+.+.+.--+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999985433
No 271
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.64 E-value=0.0064 Score=48.30 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
+|++.|.+||||||+.+.+.-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986533
No 272
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.63 E-value=0.0055 Score=52.19 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|++|||||||++-+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999998876
No 273
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.63 E-value=0.0075 Score=49.23 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.1
Q ss_pred hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
.....|++.|.+||||||+.+.+.-.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999985443
No 274
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.62 E-value=0.0074 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
..|.++|.+||||||+.+.+.-.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999985444
No 275
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.62 E-value=0.0057 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.1
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
..-|.++|.+||||||+.+.+-
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999984
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.62 E-value=0.006 Score=49.58 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
..-|++.|.+||||||+.+.+.-
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999854
No 277
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.60 E-value=0.0062 Score=49.25 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
.|++.|.+||||||+.+.+.--.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999984433
No 278
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.60 E-value=0.006 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
+|++.|.+||||||+.+.+.-..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999985433
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.58 E-value=0.0063 Score=49.27 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
..|++.|.+||||||+.+.+.-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999865
No 280
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.54 E-value=0.0085 Score=49.26 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.8
Q ss_pred hccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
...+.|++.|.+||||||+.+.+.--++
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999854433
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.52 E-value=0.0073 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~ 33 (313)
...|++.|.+||||||+.+.+.--
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999998543
No 282
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.50 E-value=0.0069 Score=51.22 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=22.3
Q ss_pred hhccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 7 QEREVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 7 ~~~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
......|++.|.+||||||+.+.+.--+
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445689999999999999999985433
No 283
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.49 E-value=0.0064 Score=51.37 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=16.9
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4679999999999998876
No 284
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.45 E-value=0.0071 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...|++.|.+||||||+.+.+.-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
No 285
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.44 E-value=0.0076 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.272 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
.|.++|.+||||||+.+.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999854
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.42 E-value=0.0073 Score=50.67 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998875
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.41 E-value=0.0071 Score=50.49 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999864
No 288
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.41 E-value=0.0085 Score=50.06 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~~ 34 (313)
.+.|++.|.+||||||+.+.+.--+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999985433
No 289
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.40 E-value=0.0073 Score=51.59 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|++|||||||+|-+
T Consensus 26 ~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5679999999999999886
No 290
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.39 E-value=0.0067 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
-.++++|++|+||||+++.+-
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999873
No 291
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.37 E-value=0.0088 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~ 33 (313)
...|++.|.+||||||+.+.+.-.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998543
No 292
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.37 E-value=0.011 Score=53.47 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=34.5
Q ss_pred CCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHH
Q psy8318 238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAV 293 (313)
Q Consensus 238 ~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i 293 (313)
++|.+||+||+|+..... ...+......| ...+..++.+||.++.|+.++...+
T Consensus 160 ~~~~iivlNK~DL~~~~~-~~~~~~~~~~y-~~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEG-MDFVNEQMDIY-RNIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TCEEEEEEECGGGCCHHH-HHHHHHHHHHH-HTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEECccCCCchh-HHHHHHHHHHH-HhCCCcEEEEecCCCcCHHHHHHhc
Confidence 568899999999876421 01111122222 2345568999999999998876543
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.36 E-value=0.008 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.8
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...|++.|.+||||||+.+.+.-
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999743
No 294
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.36 E-value=0.009 Score=48.46 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
.|++.|.+||||||+.+.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999854
No 295
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.35 E-value=0.0083 Score=51.13 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999886
No 296
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.34 E-value=0.008 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~~ 34 (313)
...|++.|.+||||||+.+.+.--+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999985433
No 297
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.34 E-value=0.0078 Score=52.55 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|++|||||||+|-+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999999886
No 298
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.31 E-value=0.0086 Score=51.37 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999886
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.28 E-value=0.0085 Score=51.15 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5779999999999998876
No 300
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.27 E-value=0.0085 Score=51.69 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 35 ~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4779999999999998886
No 301
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.27 E-value=0.0089 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=19.7
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...|++.|.+||||||+.+.+.-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999999853
No 302
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.26 E-value=0.0085 Score=51.88 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=17.0
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-+.++|.+|||||||+|-+
T Consensus 34 ~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4679999999999999876
No 303
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.25 E-value=0.0092 Score=51.21 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
....|++.|.+||||||+.+.+.-.++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999999999854443
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.25 E-value=0.0087 Score=51.80 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.++++|++||||||+++-+-
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 58899999999999999874
No 305
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.24 E-value=0.012 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
.|++.|.+||||||+.+.+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999985433
No 306
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.24 E-value=0.0091 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
-++++|++||||||+++.+.-.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57899999999999999975433
No 307
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.24 E-value=0.0092 Score=51.00 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999998886
No 308
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.22 E-value=0.01 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-|++.|.+||||||+++.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999854
No 309
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.21 E-value=0.0091 Score=51.53 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 43 i~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998876
No 310
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.20 E-value=0.0091 Score=51.84 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 39 ~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4679999999999998886
No 311
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.18 E-value=0.0094 Score=51.22 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 28 ~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999999886
No 312
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.18 E-value=0.0095 Score=50.45 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998876
No 313
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.18 E-value=0.0084 Score=48.28 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
..|++.|.+||||||+.+.+.-
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.17 E-value=0.01 Score=48.79 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
++.++|.+||||||+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKA 21 (189)
T ss_dssp CEEEESCCSSCHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHH
Confidence 5789999999999999986
No 315
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.17 E-value=0.0096 Score=51.14 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l 49 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKIL 49 (250)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4779999999999998886
No 316
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.16 E-value=0.0095 Score=51.62 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 52 i~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHH
Confidence 4679999999999998876
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.15 E-value=0.0066 Score=51.22 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=13.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||+++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 318
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.13 E-value=0.01 Score=48.34 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 13 illlG~~~sGKst~~kq~ 30 (313)
++++|+++||||||..|+
T Consensus 2 ilV~Gg~~SGKS~~A~~l 19 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEAL 19 (180)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 789999999999999997
No 319
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.12 E-value=0.01 Score=49.51 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|.+|||||||++++-
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999999999984
No 320
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.12 E-value=0.011 Score=47.17 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
.|++.|.+||||||+.+.+.-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998543
No 321
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.11 E-value=0.011 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
.-++.++|++|||||||++.+--++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34889999999999999999855543
No 322
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.10 E-value=0.011 Score=51.16 Aligned_cols=19 Identities=47% Similarity=0.567 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999886
No 323
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.10 E-value=0.01 Score=51.64 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999886
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.09 E-value=0.0099 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.3
Q ss_pred ccceEEEEcCCCCchhHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~ 32 (313)
...-|++.|.+||||||+.+.+.-
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999843
No 325
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.08 E-value=0.013 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.4
Q ss_pred cceE-EEEcCCCCchhHHHHHHHHHh
Q psy8318 10 EVKL-LLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 10 ~~ki-lllG~~~sGKst~~kq~r~~~ 34 (313)
..|| +++|++||||+|.++.+.--+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3354 578999999999999985444
No 326
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.07 E-value=0.01 Score=51.06 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++-+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999998876
No 327
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.05 E-value=0.011 Score=51.33 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 35 ~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5679999999999998876
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.05 E-value=0.014 Score=47.19 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCchhHHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~ 33 (313)
..|++.|.+||||||+.+.+.-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998543
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.04 E-value=0.012 Score=47.64 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=19.8
Q ss_pred ccceEEEEcCCCCchhHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r 31 (313)
+..-|++.|.+||||||+.+.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34568999999999999999974
No 330
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.03 E-value=0.011 Score=51.33 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l 66 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATL 66 (267)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998886
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.03 E-value=0.012 Score=51.10 Aligned_cols=19 Identities=37% Similarity=0.819 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999886
No 332
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.03 E-value=0.011 Score=50.81 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+++.|.+||||||+.+++-
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 36899999999999999973
No 333
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.02 E-value=0.012 Score=51.55 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 49 ~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999998875
No 334
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.01 E-value=0.011 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
.-|++.|.+||||||+.+.+.-
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.00 E-value=0.013 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.2
Q ss_pred ccceEEEEcCCCCchhHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~ 32 (313)
+...|.+.|.+||||||+++.+.-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999753
No 336
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.97 E-value=0.014 Score=51.81 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
...-|.++|++|||||||++.+.-+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 344678999999999999998865443
No 337
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.97 E-value=0.015 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~~ 35 (313)
-|++.|.+||||||+.+.+.--.+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999864333
No 338
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.91 E-value=0.013 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~~ 34 (313)
...|.++|++||||||+++.+.-+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999885443
No 339
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.90 E-value=0.013 Score=48.57 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|.+|||||||++++-
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999974
No 340
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.90 E-value=0.014 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...|++.|.+||||||+.+.+.-
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999853
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.82 E-value=0.014 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.7
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
..-|.+.|.+||||||+++.+.-
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999998753
No 342
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.79 E-value=0.017 Score=47.57 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=23.5
Q ss_pred hccceEEEEcCCCCchhHHHHHHHHHhcC
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMKIIHET 36 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r~~~~~ 36 (313)
...+.|.+.|..||||||+.+.+.-.++-
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35678889999999999999998755443
No 343
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.78 E-value=0.0067 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-|++.|.+||||||+++.+.-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 344
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.77 E-value=0.014 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
.+.++|++|||||||++-+--++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68899999999999999885444
No 345
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.74 E-value=0.016 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...|.+.|.+||||||+.+.+.-
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.74 E-value=0.015 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
..-|++.|.+||||||+.+.+.-
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999853
No 347
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.69 E-value=0.017 Score=49.59 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
..|.++|.+||||||+++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999987
No 348
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.65 E-value=0.015 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-++++|.+|||||||++++-..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998543
No 349
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.63 E-value=0.015 Score=52.64 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 32 ~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
Confidence 46799999999999998864
No 350
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.62 E-value=0.016 Score=50.88 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999998876
No 351
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.56 E-value=0.017 Score=48.58 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-++++|.+|||||||++++-.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999854
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.54 E-value=0.022 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~~ 35 (313)
-.+++|.+||||||+++-+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999866543
No 353
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.54 E-value=0.023 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~ 33 (313)
+.+.|.+.|.+||||||+.+.+.-.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998653
No 354
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.53 E-value=0.022 Score=50.01 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=22.1
Q ss_pred hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
.+...|.+.|++||||||+++.+.-++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999886544
No 355
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.51 E-value=0.017 Score=52.20 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 43 ~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 46799999999999999863
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.013 Score=47.28 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
.+.++|.+||||||+++.+--++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999874444
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.47 E-value=0.019 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
.-.|+++|.+||||||+.+.+--
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999844
No 358
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.43 E-value=0.021 Score=49.85 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCchhHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~ 32 (313)
+...|.+.|.+||||||+.+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999873
No 359
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.43 E-value=0.019 Score=52.10 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 46799999999999998864
No 360
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.43 E-value=0.018 Score=53.35 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
++.++|.+|||||||++-+
T Consensus 44 ~vaLvG~nGaGKSTLln~L 62 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTL 62 (427)
T ss_dssp EEEEECSTTSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999998885
No 361
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.37 E-value=0.021 Score=46.16 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-+++.|.+||||||+++.+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 5789999999999999986
No 362
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.36 E-value=0.022 Score=48.38 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=20.7
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~ 33 (313)
..+.|.+.|++||||||+.+.+--.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999987433
No 363
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.019 Score=52.03 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
Confidence 46799999999999998863
No 364
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.35 E-value=0.019 Score=52.34 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 31 ~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 46799999999999998864
No 365
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.34 E-value=0.02 Score=51.87 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.++++|++||||||+++-+
T Consensus 125 ~i~I~GptGSGKTTlL~~l 143 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAM 143 (356)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999976
No 366
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.33 E-value=0.02 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-++++|.+|||||||++++-.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 367
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.33 E-value=0.02 Score=44.93 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-++++|.+||||||+++-+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i 56 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAW 56 (149)
T ss_dssp EEEEESSSTTTTCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998886
No 368
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.32 E-value=0.02 Score=52.15 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHH
Confidence 46799999999999998864
No 369
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.30 E-value=0.021 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-|++.|.+||||||+.+.+.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 370
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.29 E-value=0.02 Score=52.09 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 39 ~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 46799999999999999864
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.29 E-value=0.028 Score=50.12 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
.+=|.+.|++||||||+++.+.-+..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44578999999999999999865543
No 372
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.29 E-value=0.016 Score=51.43 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||++-+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 68899999999999998863
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.28 E-value=0.026 Score=49.98 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
...|.++|++||||||+++.+.-+..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35688999999999999999865443
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.26 E-value=0.023 Score=45.42 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
-.+++.|.+|+||||+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 45899999999999999986
No 375
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.23 E-value=0.022 Score=49.50 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r 31 (313)
++++|++|+||||+++.+-
T Consensus 47 vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 8999999999999999874
No 376
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.20 E-value=0.016 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.8
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
..-|.+.|..||||||+++.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999998864
No 377
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.09 E-value=0.024 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-+.++|.+|||||||+|-+--+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4679999999999999887533
No 378
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.09 E-value=0.025 Score=48.26 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
++++|++|+||||+++.+--
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998743
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.08 E-value=0.017 Score=52.11 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 28 ~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 46899999999999998864
No 380
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.05 E-value=0.023 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.1
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
.-.++++|.+||||||+++-+-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999873
No 381
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.97 E-value=0.034 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~ 34 (313)
-.+.++|.+||||||+++-+--++
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999885444
No 382
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.96 E-value=0.022 Score=50.99 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.9
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
-.++++|++||||||+++-+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l 191 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSI 191 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 37899999999999998886
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.94 E-value=0.026 Score=51.41 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.++++|++||||||+++-+-
T Consensus 138 ~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 384
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.92 E-value=0.03 Score=45.04 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.0
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.+.|.+||||||++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4679999999999999886
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.90 E-value=0.028 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
--+.++|.+||||||+++-+--
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999998743
No 386
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.026 Score=52.90 Aligned_cols=21 Identities=14% Similarity=0.589 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
-.+.++|.+|||||||+|-+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999863
No 387
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.88 E-value=0.029 Score=47.38 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~~~ 34 (313)
+..-|++.|.+||||||+++.+.-..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999985433
No 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.82 E-value=0.028 Score=51.53 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|++||||||+++-+-
T Consensus 49 ~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 57899999999999998863
No 389
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.82 E-value=0.029 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCchhHHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~ 33 (313)
-++.++|.+|+||||+++.+--+
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998443
No 390
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.79 E-value=0.019 Score=49.45 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=20.1
Q ss_pred hccceEEEEcCCCCchhHHHHHHH
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~r 31 (313)
++...|++.|..||||||+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999999874
No 391
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.76 E-value=0.03 Score=51.87 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-++++|+.||||||+++-+
T Consensus 169 ii~I~GpnGSGKTTlL~al 187 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAG 187 (418)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4799999999999999986
No 392
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.74 E-value=0.032 Score=46.56 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=18.9
Q ss_pred cceEEEEcCCCCchhHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~ 30 (313)
.-.+++.|++|+||||+++.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987
No 393
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.031 Score=47.00 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-++++|.+|||||||+.|+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999999887
No 394
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.69 E-value=0.018 Score=52.14 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+.++|++||||||++|-+-
T Consensus 33 ~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 46799999999999998763
No 395
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.67 E-value=0.031 Score=50.43 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
-+.++|.+|||||||++|+-...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999985543
No 396
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.58 E-value=0.03 Score=49.78 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|..||||||+++.+-
T Consensus 6 v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 35789999999999999874
No 397
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.57 E-value=0.035 Score=48.12 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
++++|.+|+||||+++.+--
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999998743
No 398
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.51 E-value=0.034 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.7
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
..-|++.|.+||||||+.+++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999999999963
No 399
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.51 E-value=0.04 Score=46.53 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.5
Q ss_pred ccceEEEEcCCCCchhHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~ 32 (313)
+...|.+.|.+||||||+.+.+.-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998754
No 400
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.49 E-value=0.051 Score=45.97 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=21.6
Q ss_pred hhccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 7 QEREVKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 7 ~~~~~killlG~~~sGKst~~kq~r~~~~ 35 (313)
....+++-++|++||||||+.+.+.--++
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cccccceeeECCCCCCHHHHHHHHHHHhC
Confidence 34678999999999999999999854443
No 401
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.48 E-value=0.037 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
-.+.++|.+|||||||++.+-
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999975
No 402
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.45 E-value=0.034 Score=53.04 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-++++|.+|||||||++++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999994
No 403
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.44 E-value=0.051 Score=42.59 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.3
Q ss_pred EEEEcCCCCchhHHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~ 33 (313)
.+++|+.||||||++.-+...
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999998753
No 404
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.44 E-value=0.037 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=19.9
Q ss_pred ccceEEEEcCCCCchhHHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r~ 32 (313)
+.--+.++|.+||||||+++.+--
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999998743
No 405
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.42 E-value=0.051 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~~ 35 (313)
.|.+.|.+||||||+.+.+.-..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 578999999999999999865444
No 406
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.41 E-value=0.03 Score=44.65 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.0
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
.-.+++.|.+|+||||+++.+-
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999873
No 407
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.37 E-value=0.039 Score=48.62 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+||||||+++.+
T Consensus 171 iv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHh
Confidence 5789999999999999986
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.29 E-value=0.039 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
--++++|.+||||||+++.|--
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 3578999999999999998743
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.29 E-value=0.041 Score=46.93 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
-.+++.|.+|+||||+++.+-
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 358999999999999999874
No 410
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.22 E-value=0.041 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCchhHHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~ 33 (313)
-++.++|.+|||||||++.+--+
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999988443
No 411
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.14 E-value=0.041 Score=52.31 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.5
Q ss_pred cceEEEEcCCCCchhHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~ 30 (313)
...++++|+.||||||+++-+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 335999999999999999986
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.14 E-value=0.043 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
--+.++|.+||||||+++-+--
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3578999999999999998743
No 413
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.13 E-value=0.047 Score=44.61 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.2
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
-.+++.|.+|+||||+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999999886
No 414
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.12 E-value=0.047 Score=47.14 Aligned_cols=21 Identities=38% Similarity=0.803 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
++++++|.+|+|||||++.+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 599999999999999999863
No 415
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.06 E-value=0.046 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
-.++++|++|+||||+++-+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 358999999999999999874
No 416
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.05 E-value=0.046 Score=49.45 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||++.+
T Consensus 217 ~~~lvG~sG~GKSTLln~L 235 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNAL 235 (358)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 6889999999999999886
No 417
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.89 E-value=0.053 Score=44.91 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+++.|.+|+||||+++.+-
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999873
No 418
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.88 E-value=0.054 Score=44.30 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+++.|.+|+||||+++.+-
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999873
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.75 E-value=0.046 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=17.5
Q ss_pred cceEEEEcCCCCchhHHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~ 33 (313)
..-|.+-|++||||||+.+.+.-.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 446889999999999999998654
No 420
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.74 E-value=0.052 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|.+|||||||++|+-
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999974
No 421
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.72 E-value=0.066 Score=41.46 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.9
Q ss_pred hccceEEEEcCCCCchhHHHHHH
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~ 30 (313)
.....|++.|.+|+|||++.+.+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHH
Confidence 34567999999999999999885
No 422
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.72 E-value=0.056 Score=49.90 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.5
Q ss_pred cceEEEEcCCCCchhHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~ 30 (313)
...+.++|.+|||||||++.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L 89 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTL 89 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 347889999999999999986
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.62 E-value=0.057 Score=51.68 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||+|-+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999988863
No 424
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.56 E-value=0.062 Score=46.90 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=20.1
Q ss_pred ccceEEEEcCCCCchhHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~ 30 (313)
..++++++|.+++|||||++.+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l 140 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRL 140 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCceEEEEecCCCchHHHHHHH
Confidence 5678999999999999999986
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.55 E-value=0.059 Score=49.12 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
-.++++|++||||||+++.+-
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999874
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.52 E-value=0.069 Score=45.13 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
..|++-|..||||||+++.+.-
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999854
No 427
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.40 E-value=0.063 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=19.7
Q ss_pred cceEEEEcCCCCchhHHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~ 33 (313)
.-.++++|.+||||||++..+-..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 336889999999999999987543
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.34 E-value=0.085 Score=43.65 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~~~~ 35 (313)
+.|.+.|..||||||+.+.+.-.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999865443
No 429
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.32 E-value=0.066 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.3
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
.-.+|+.|++|+||||+++.+-
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3469999999999999999873
No 430
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.28 E-value=0.067 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.3
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
.--+|+.|++|+||||+++.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4578999999999999999873
No 431
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.25 E-value=0.093 Score=43.29 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEcCCCCchhHHHHHHHHHhc
Q psy8318 13 LLLLGAGESGKSTIVKQMKIIHE 35 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~~~~ 35 (313)
.+++|.+||||||++.-+.....
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999876443
No 432
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.21 E-value=0.067 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
-+.++|.+||||||+++-+--+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 56799999999999999875443
No 433
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.20 E-value=0.031 Score=49.52 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=18.2
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
-.+.++|.+|||||||++.+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L 193 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAI 193 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHh
Confidence 46899999999999999986
No 434
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.14 E-value=0.068 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.2
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
..-|+|+|.+||||||+.+++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3458899999999999999984
No 435
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.09 E-value=0.069 Score=51.56 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
++.++|++||||||+++-+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999999863
No 436
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.06 E-value=0.076 Score=45.10 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
--+|+.|.+|+||||+++.+-
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999873
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.00 E-value=0.072 Score=50.95 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.7
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-+.++|.+||||||++|-+
T Consensus 27 i~gLiGpNGaGKSTLlkiL 45 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKIL 45 (538)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 3679999999999998876
No 438
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.00 E-value=0.075 Score=47.01 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
--+++.|++|+||||+++.+-
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999873
No 439
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.98 E-value=0.077 Score=46.90 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-++++|.+||||||++..+-..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH
Confidence 5789999999999999988543
No 440
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.96 E-value=0.07 Score=53.19 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|++||||||++|++-
T Consensus 578 i~~I~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTA 597 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 47899999999999999974
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.95 E-value=0.077 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
--+|+.|++|+||||+++.+--
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3589999999999999998743
No 442
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.95 E-value=0.073 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q psy8318 12 KLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~~ 34 (313)
++.++|.+||||||+++-+--++
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999874333
No 443
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.85 E-value=0.074 Score=53.29 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|++||||||++|++-
T Consensus 609 i~~ItGpNGsGKSTlLr~ia 628 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTA 628 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 47899999999999999974
No 444
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.83 E-value=0.074 Score=51.51 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+||||||+++-+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999999863
No 445
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.76 E-value=0.085 Score=47.29 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-|++.|++|||||||.+.+...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4789999999999999987543
No 446
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.76 E-value=0.082 Score=47.78 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
+++.|++|||||||+.|+-.
T Consensus 64 ~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999843
No 447
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.74 E-value=0.08 Score=51.40 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+||||||++|-+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 57899999999999988763
No 448
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.71 E-value=0.084 Score=51.26 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL 137 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKIL 137 (607)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHH
Confidence 5789999999999998876
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.58 E-value=0.091 Score=46.76 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
.|++.|++||||||+.+.+-.
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998743
No 450
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.55 E-value=0.086 Score=51.08 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
++.++|.+||||||+++-+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 78999999999999998863
No 451
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.42 E-value=0.1 Score=47.07 Aligned_cols=20 Identities=45% Similarity=0.713 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
..|+++|.+||||||+.+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~l 44 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEEL 44 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46999999999999999876
No 452
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.42 E-value=0.09 Score=51.03 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||+|-+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998863
No 453
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.28 E-value=0.098 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=16.9
Q ss_pred ccceEEEEcCCCCchhHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r 31 (313)
+..-|++.|.+||||||+++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45568999999999999999874
No 454
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.27 E-value=0.092 Score=53.46 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
-++++|++||||||++|++
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.25 E-value=0.097 Score=50.05 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 296 i~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4679999999999998886
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.21 E-value=0.1 Score=49.90 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+|||||||+|-+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l 332 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKML 332 (538)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999886
No 457
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.21 E-value=0.11 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKII 33 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~~ 33 (313)
-++++|++||||||++|++-++
T Consensus 791 i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5789999999999999998543
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.20 E-value=0.11 Score=42.89 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
..|++.|++||||||+...+
T Consensus 35 ~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999886
No 459
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.18 E-value=0.12 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.3
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
..-|++-|.+||||||+++.+.-
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998743
No 460
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.17 E-value=0.085 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...+.++|.+||||||+++.+--
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 34688999999999999998843
No 461
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=91.15 E-value=0.073 Score=51.71 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|.+||||||+++-+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I 65 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEAL 65 (608)
T ss_dssp CEECCCCTTSCHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHH
Confidence 5899999999999998886
No 462
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.11 E-value=0.098 Score=49.80 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-++++|.+|||||||++++--
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999843
No 463
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.11 E-value=0.089 Score=46.94 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.2
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
+++.|++|+||||+++.+--
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998744
No 464
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.11 E-value=0.11 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEcCCCCchhHHHHHHHH-HhcCC
Q psy8318 13 LLLLGAGESGKSTIVKQMKI-IHETG 37 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~-~~~~~ 37 (313)
.+++|.+||||||++.-+-. +++.+
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~g~~ 51 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALFGNG 51 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc
Confidence 56899999999999998754 35443
No 465
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.08 E-value=0.11 Score=42.06 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=15.6
Q ss_pred EEEEcCCCCchhHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 13 illlG~~~sGKst~~kq~ 30 (313)
+++.|++||||||++.|+
T Consensus 6 ~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSF 23 (184)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999998664
No 466
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.99 E-value=0.11 Score=46.84 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+++.|.+|||||||+.|+-
T Consensus 63 iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999984
No 467
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.94 E-value=0.11 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
-.+++.|.+|+||||+++.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 368999999999999999874
No 468
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.91 E-value=0.11 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.0
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
.--+++.|.+|+||||+++.+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999873
No 469
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.90 E-value=0.12 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.6
Q ss_pred ccceEEEEcCCCCchhHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r 31 (313)
....+|+.|.+|+||||+++.+-
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34568999999999999999874
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.87 E-value=0.087 Score=50.84 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
.+.++|++||||||+++-+
T Consensus 369 ~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEECCCCChHHHHHHHH
Confidence 6889999999999999875
No 471
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.84 E-value=0.11 Score=45.25 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.0
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
..+|+.|++|+||||+++.+
T Consensus 68 ~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35999999999999999876
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.82 E-value=0.11 Score=50.37 Aligned_cols=18 Identities=33% Similarity=0.800 Sum_probs=16.7
Q ss_pred EEEEcCCCCchhHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 13 illlG~~~sGKst~~kq~ 30 (313)
+.++|.+|||||||++-+
T Consensus 381 v~iiG~NGsGKSTLlk~l 398 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLL 398 (608)
T ss_dssp EEEESCTTSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 689999999999999886
No 473
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.80 E-value=0.081 Score=53.75 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-++++|++||||||++|++-
T Consensus 675 i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHH
Confidence 47899999999999999973
No 474
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.76 E-value=0.12 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=19.8
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
...+|+.|.+|+||||+++.+-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998743
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.58 E-value=0.14 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.9
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
..-|++.|.+||||||+++.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999874
No 476
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.56 E-value=0.078 Score=40.97 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.1
Q ss_pred ccceEEEEcCCCCchhHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~ 30 (313)
....|++.|.+|+|||++.+.+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCcEEEECCCCccHHHHHHHH
Confidence 4557999999999999998884
No 477
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.51 E-value=0.13 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+++.|.+|+||||+++.+-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 478
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.50 E-value=0.15 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.1
Q ss_pred hccceEEEEcCCCCchhHHHHHH
Q psy8318 8 EREVKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 8 ~~~~killlG~~~sGKst~~kq~ 30 (313)
+..++|++.|.+|+||||++-++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHH
Confidence 56789999999999999996664
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.49 E-value=0.13 Score=45.64 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
--+|+.|++|+|||++++.+-
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 358999999999999999874
No 480
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.39 E-value=0.12 Score=50.01 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
++.++|.+||||||+++-+
T Consensus 371 ~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp EEEEECSSSSSHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7889999999999999876
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.32 E-value=0.14 Score=45.76 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-|+++|+.||||||+...+-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 482
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.28 E-value=0.14 Score=52.37 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
.+.++|.+|||||||+|-+-
T Consensus 463 ~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999988863
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.20 E-value=0.16 Score=41.01 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCchhHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~ 30 (313)
.=||+.|.+|+||||+.-.+
T Consensus 17 ~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 35899999999999999886
No 484
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.18 E-value=0.15 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=18.6
Q ss_pred cceEEEEcCCCCchhHHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~ 32 (313)
..-+|+.|++|+|||++++.+-.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34567779999999999998743
No 485
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.11 E-value=0.08 Score=45.31 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+|+.|++|+||||+++.+-
T Consensus 46 ~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 48999999999999999873
No 486
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.11 E-value=0.16 Score=42.44 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMKIIH 34 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r~~~ 34 (313)
..-|++.|.+||||||.++.+.-..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999975433
No 487
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.09 E-value=0.15 Score=45.28 Aligned_cols=19 Identities=32% Similarity=0.714 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r 31 (313)
+++.|++|+|||||..|+-
T Consensus 126 iLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp EEEECSCSSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999973
No 488
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.08 E-value=0.15 Score=45.46 Aligned_cols=19 Identities=26% Similarity=0.558 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r 31 (313)
+++.|++|+||||+++.+-
T Consensus 49 ~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999999873
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.03 E-value=0.15 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
-.+|+.|++|+|||++++.+--
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3599999999999999998743
No 490
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.00 E-value=0.15 Score=46.45 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.0
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
...++++|++||||||+++.+-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHH
Confidence 3468999999999999999773
No 491
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.98 E-value=0.18 Score=42.41 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.6
Q ss_pred ccceEEEEcCCCCchhHHHHHHH
Q psy8318 9 REVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 9 ~~~killlG~~~sGKst~~kq~r 31 (313)
+..-|++-|.+||||||+.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568889999999999999874
No 492
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.93 E-value=0.16 Score=42.54 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQM 30 (313)
Q Consensus 12 killlG~~~sGKst~~kq~ 30 (313)
=+++.|.+|+|||||+-|+
T Consensus 32 l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 3689999999999999997
No 493
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.92 E-value=0.17 Score=42.13 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.0
Q ss_pred ceEEEEcCCCCchhHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r 31 (313)
.-|++-|.+||||||.++.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999999874
No 494
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.90 E-value=0.18 Score=44.63 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCchhHHHHHHHH
Q psy8318 11 VKLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 11 ~killlG~~~sGKst~~kq~r~ 32 (313)
-.||+.|.+|+||||+++.+-.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999999743
No 495
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.88 E-value=0.14 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.2
Q ss_pred cceEEEEcCCCCchhHHHHHHH
Q psy8318 10 EVKLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 10 ~~killlG~~~sGKst~~kq~r 31 (313)
.-.+++.|.+|+||||+++.+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999999873
No 496
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.84 E-value=0.16 Score=45.07 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-++++|.+||||||++..+-.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999998743
No 497
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.80 E-value=0.16 Score=45.54 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r~ 32 (313)
-+++.|.+|||||||+.|+-.
T Consensus 124 i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999854
No 498
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.77 E-value=0.16 Score=44.77 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-+++.|.+|+||||+++++.
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHH
Confidence 47899999999999999974
No 499
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.68 E-value=0.17 Score=44.78 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q psy8318 12 KLLLLGAGESGKSTIVKQMK 31 (313)
Q Consensus 12 killlG~~~sGKst~~kq~r 31 (313)
-|++.|++||||||+...+-
T Consensus 5 ~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 36789999999999999874
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.59 E-value=0.27 Score=40.62 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEEcCCCCchhHHHHHHHH
Q psy8318 13 LLLLGAGESGKSTIVKQMKI 32 (313)
Q Consensus 13 illlG~~~sGKst~~kq~r~ 32 (313)
|++=|..||||||.++.+.-
T Consensus 5 I~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 55669999999999988753
Done!