RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8318
(313 letters)
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 382 bits (982), Expect = e-133
Identities = 252/326 (77%), Positives = 273/326 (83%), Gaps = 23/326 (7%)
Query: 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRA 64
+ REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRA
Sbjct: 27 EKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRA 86
Query: 65 MGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQ 124
MG+LKIDFGD AD ARQ F LA AAEEG +T +L ++KRLW D GVQ CF+RSREYQ
Sbjct: 87 MGRLKIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 146
Query: 125 LNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSE 184
LNDSAAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSE
Sbjct: 147 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSE 206
Query: 185 RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF 244
RKKWIHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILF
Sbjct: 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 266
Query: 245 LNKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCAT 281
LNK DLF+EKI KSPLT+C+PEY D KEIYTHFTCAT
Sbjct: 267 LNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCAT 326
Query: 282 DTSNIQFVFDAVTDVIIKANLKDCGI 307
DT N+QFVFDAVTDVIIK NLKDCG+
Sbjct: 327 DTKNVQFVFDAVTDVIIKNNLKDCGL 352
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 378 bits (971), Expect = e-132
Identities = 162/324 (50%), Positives = 201/324 (62%), Gaps = 24/324 (7%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMG 66
RE+KLLLLG GESGKST +KQM+IIH +GYS E+ + +VY N ++ A+IRAM
Sbjct: 4 ARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMD 63
Query: 67 QLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLN 126
LKI + N Q + V +K LW+D G+Q C+ R REYQL+
Sbjct: 64 TLKIPYKYEHN-KAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLS 122
Query: 127 DSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERK 186
DS YYLN LDR++ P+Y+PTQQDVLR RV TTGIIE F + + F+M DVGGQRSER+
Sbjct: 123 DSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERR 182
Query: 187 KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLN 246
KWIHCFE VT+I+F VALS YD VL E + NRM ES LF +I WF ++S+ILFLN
Sbjct: 183 KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 242
Query: 247 KNDLFQEKITKSPLTVCFPEYTD-----------------------QKEIYTHFTCATDT 283
K DL +EKI S L FPEY K IY+HFTCATDT
Sbjct: 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 302
Query: 284 SNIQFVFDAVTDVIIKANLKDCGI 307
NI+FVF AV D I++ NLK+ +
Sbjct: 303 ENIRFVFAAVKDTILQLNLKEYNL 326
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 372 bits (956), Expect = e-129
Identities = 133/334 (39%), Positives = 193/334 (57%), Gaps = 31/334 (9%)
Query: 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRA 64
+ R VK+LLLGAGESGKST +KQM+IIH + + E++RP +YSN I+ + ++ A
Sbjct: 28 ERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDA 87
Query: 65 MGQLKIDFGDHKNADCARQFF-------TLASAAEEGDLTPDLVILMKRLWSDQGVQHCF 117
+L I +GD+KN + A E + + ++ LW D G+Q+ +
Sbjct: 88 REKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAY 147
Query: 118 HRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFD 177
R RE+QL +S Y+L+ LD++ P+YIP+QQD+L R T GI E F K++ FKM D
Sbjct: 148 DRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVD 207
Query: 178 VGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237
VGGQRSERK+W CF+ VT+I+F V+ S +D VL ED + NR+ ES+ +F++I N++ F
Sbjct: 208 VGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267
Query: 238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTD------------------------QKEI 273
+ SIILFLNK DL +EK+ + F E+ Q+ +
Sbjct: 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL 327
Query: 274 YTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI 307
Y HFT A +T NI+ VF V D I+ NLK +
Sbjct: 328 YHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 361
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 367 bits (944), Expect = e-128
Identities = 119/346 (34%), Positives = 178/346 (51%), Gaps = 47/346 (13%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
KLLLLGAGESGKSTI KQ+K++ +TG+ + E + Y PV+++N Q++ + +
Sbjct: 8 HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67
Query: 69 KIDFGDHKNADCARQFFTLAS-------AAEEGDLTPDLVILMKRLWSDQGVQHCFHRSR 121
+ D + + + + LT D+ ++ LW D +Q R
Sbjct: 68 AQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGN 127
Query: 122 EYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKD------LHFKM 175
E Q+ D Y + L R+S NYIPT++DVL RV+TTG++E F+ +++
Sbjct: 128 ELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187
Query: 176 FDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235
FDVGGQR+ER+KWIH FEGVTA+IFC A+S YD L EDE+ NRM+E+ +LFD +
Sbjct: 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247
Query: 236 FMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYT------------------------- 268
F TS +LFLNK D+F++K+ PL VC F +Y
Sbjct: 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY 307
Query: 269 -------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI 307
+ + T A D ++ F V + + + NL + G+
Sbjct: 308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGL 353
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 358 bits (919), Expect = e-123
Identities = 135/359 (37%), Positives = 184/359 (51%), Gaps = 56/359 (15%)
Query: 5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECE---------------QYRPV 49
Q +LLLLGAGESGKSTIVKQM+I+H G++ E E
Sbjct: 35 QVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQD 94
Query: 50 VYSNSIQSLMAIIRAMGQLKIDFGDHKNADCAR-QFFTLASAAEEGDLTPDLVILMKRLW 108
+ +N +++ I+ AM L + R + + D P+ K LW
Sbjct: 95 IKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALW 154
Query: 109 SDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTF 168
D+GV+ C+ RS EYQL D A Y+L+ +D I Q +Y+P+ QD+LR RV T+GI ET F
Sbjct: 155 EDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQV 214
Query: 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228
++F MFDVGGQR ER+KWI CF VTAIIF VA S Y+ V+ ED + NR+ E++ LF
Sbjct: 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFK 274
Query: 229 SICNSKWFMDTSIILFLNKNDLFQEKIT--KSPLTVCFPEYTD----------------- 269
SI N++W S+ILFLNK DL EK+ KS + FPE+
Sbjct: 275 SIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRV 334
Query: 270 ---------------------QKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI 307
+ Y HFTCA DT NI+ VF+ D+I + +L+ +
Sbjct: 335 TRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 63.4 bits (155), Expect = 3e-12
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
E T + F FD+GG R+ W + + I+F V D D E R++
Sbjct: 61 SEE-LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV-----DCA---DHE--RLL 109
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
ES + DS+ + + I++ NK D
Sbjct: 110 ESKEELDSLMTDETIANVPILILGNKIDR 138
Score = 32.6 bits (75), Expect = 0.11
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
++ KL+ LG +GK+T++ +K
Sbjct: 21 LYKKTGKLVFLGLDNAGKTTLLHMLK 46
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 63.4 bits (155), Expect = 3e-12
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
E ++ F FD+GG R+ W F V I+F V D+ D E R
Sbjct: 59 SEE-LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV-----DAA---DPE--RFD 107
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
E+ D++ N D ++ NK D
Sbjct: 108 EARVELDALFNIAELKDVPFVILGNKIDA 136
Score = 31.8 bits (73), Expect = 0.15
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
+ KLL LG +GK+T++ +K
Sbjct: 19 LWNKHGKLLFLGLDNAGKTTLLHMLK 44
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 61.4 bits (150), Expect = 9e-12
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+ET T+K+L F+++D+GG S R W + A+I+ V DS D + R+
Sbjct: 43 VET-VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV-----DSC---DRD--RIG 91
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTC 279
S ++ + +++F NK D+ ++ +T S + P D ++ T
Sbjct: 92 ISKSELVAMLEEEELRKAILVVFANKQDM-EQAMTSSEMANSLGLPALKD-RKWQIFKTS 149
Query: 280 ATDTSNIQFVFDAVTDVIIK 299
AT + + + + + +
Sbjct: 150 ATKGTGLDEAMEWLVETLKS 169
Score = 31.8 bits (73), Expect = 0.15
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
RE+++L+LG +GK+TI+ +++
Sbjct: 3 HMTREMRILILGLDGAGKTTILYRLQ 28
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 61.5 bits (150), Expect = 1e-11
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+E + F M+D+GGQ S R W + +I V DS D E R+
Sbjct: 57 VEE-IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----DST---DRE--RIS 105
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
+ + + + +++F NK D+
Sbjct: 106 VTREELYKMLAHEDLRKAGLLIFANKQDV 134
Score = 31.4 bits (72), Expect = 0.22
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 8 EREVKLLLLGAGESGKSTIVKQMK 31
+E K++++G +GK+TI+ Q
Sbjct: 19 SQEHKVIIVGLDNAGKTTILYQFS 42
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 61.1 bits (149), Expect = 2e-11
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
I++ + ++D+GGQR R W FE +I+ + DS D + R
Sbjct: 52 IKS-VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI-----DSA---DRK--RFE 100
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
E+ + + + +++F NK DL
Sbjct: 101 ETGQELTELLEEEKLSCVPVLIFANKQDL 129
Score = 32.9 bits (76), Expect = 0.074
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 5 QWQEREVKLLLLGAGESGKSTIVKQMK 31
++EV++LLLG +GK+T++KQ+
Sbjct: 11 SAPDQEVRILLLGLDNAGKTTLLKQLA 37
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 61.1 bits (149), Expect = 2e-11
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
I+T + ++DVGGQ+S R W + FE +I+ V DS D + RM
Sbjct: 54 IKT-LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV-----DSA---DRQ--RMQ 102
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
+ + S+ + ++++F NK DL
Sbjct: 103 DCQRELQSLLVEERLAGATLLIFANKQDL 131
Score = 34.1 bits (79), Expect = 0.029
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
+ERE++LL+LG +GK+TI+K+
Sbjct: 14 QKERELRLLMLGLDNAGKTTILKKFN 39
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 60.7 bits (148), Expect = 3e-11
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+ T ++ K++D+GGQ R W GV+AI++ V D+ D+E ++
Sbjct: 59 MRK-ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV-----DAA---DQE--KIE 107
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
S ++ + +++ NK DL
Sbjct: 108 ASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
Score = 33.3 bits (77), Expect = 0.056
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
+ E++L L+G SGK+T V +
Sbjct: 18 GSKEEMELTLVGLQYSGKTTFVNVIA 43
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 60.3 bits (147), Expect = 3e-11
Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+ET +K++ F+++D+GGQ R W F A+I+ V DS D + RM
Sbjct: 58 LET-LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV-----DST---DRD--RMG 106
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTC 279
+ ++ + + +++F NK DL + +++ + ++ +
Sbjct: 107 VAKHELYALLDEDELRKSLLLIFANKQDL-PDAASEAEIAEQLGVSSIMNRT-WTIVKSS 164
Query: 280 ATDTSNIQFVFDAVTDVIIK 299
+ + D + + + +
Sbjct: 165 SKTGDGLVEGMDWLVERLRE 184
Score = 32.6 bits (75), Expect = 0.083
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
+R++++L+LG +GK++I+ ++
Sbjct: 18 PADRKIRVLMLGLDNAGKTSILYRLH 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 60.0 bits (146), Expect = 4e-11
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+E + F M+D+GGQ S R W + +I V DS D E R+
Sbjct: 52 VEE-IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----DST---DRE--RIS 100
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
+ + + + +++F NK D+
Sbjct: 101 VTREELYKMLAHEDLRKAGLLIFANKQDV 129
Score = 32.2 bits (74), Expect = 0.11
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
+ +E K++++G +GK+TI+ Q
Sbjct: 12 FNHQEHKVIIVGLDNAGKTTILYQFS 37
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 60.0 bits (146), Expect = 5e-11
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+ET ++K+L ++D+GGQ S R W + A+IF V DS D++ RM
Sbjct: 54 VET-LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV-----DST---DKD--RMS 102
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
+ K + + D ++++F NK D
Sbjct: 103 TASKELHLMLQEEELQDAALLVFANKQDQ 131
Score = 31.8 bits (73), Expect = 0.17
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
+E+++L+LG +GK+TI+ +++
Sbjct: 14 GSNKELRILILGLDGAGKTTILYRLQ 39
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 59.5 bits (145), Expect = 5e-11
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+ET +K++ F ++DVGGQ R W H F+ +IF V DS D E R+
Sbjct: 36 VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---DRE--RVN 84
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
E+ + + D +++F NK DL
Sbjct: 85 EAREELMRMLAEDELRDAVLLVFANKQDL 113
Score = 28.3 bits (64), Expect = 2.0
Identities = 7/21 (33%), Positives = 17/21 (80%)
Query: 11 VKLLLLGAGESGKSTIVKQMK 31
+++L++G +GK+TI+ ++K
Sbjct: 1 MRILMVGLDAAGKTTILYKLK 21
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 57.3 bits (139), Expect = 4e-10
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 158 TTG-IIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEE 216
T G +ET +K++ F ++DVGGQ R W H F+ +IF V DS D E
Sbjct: 60 TIGFNVET-VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---DRE 110
Query: 217 MNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250
R+ ES + D +++F NK D+
Sbjct: 111 --RVQESADELQKMLQEDELRDAVLLVFANKQDM 142
Score = 32.7 bits (75), Expect = 0.099
Identities = 7/26 (26%), Positives = 21/26 (80%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
+ ++++++L++G +GK+TI+ ++K
Sbjct: 25 FGKKQMRILMVGLDAAGKTTILYKLK 50
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 59.5 bits (144), Expect = 4e-10
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+ET T+K++ F ++DVGGQ R W H + G +IF V D D + R+
Sbjct: 358 VET-VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV-----DCA---DRD--RID 406
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
E+ + I N + D I++F NK DL
Sbjct: 407 EARQELHRIINDREMRDAIILIFANKQDL 435
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 58.0 bits (140), Expect = 8e-10
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
+ET +K++ F ++DVGGQ R W H F+ +IF V DS D E R+
Sbjct: 201 VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---DRE--RVN 249
Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
E+ + + D +++F NK DL
Sbjct: 250 EAREELMRMLAEDELRDAVLLVFANKQDL 278
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 56.5 bits (137), Expect = 8e-10
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
IE F L F +FD+ GQ R W H ++ AIIF + DS D RM+
Sbjct: 59 IEK-FKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI-----DSS---DRL--RMV 107
Query: 222 ESMKLFDSICNSK--WFMDTSIILFLNKNDL 250
+ + D++ N I+ F NK DL
Sbjct: 108 VAKEELDTLLNHPDIKHRRIPILFFANKMDL 138
Score = 31.9 bits (73), Expect = 0.15
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 8 EREVKLLLLGAGESGKSTIVKQMK 31
+EV +L LG SGK+TI+ ++K
Sbjct: 19 SKEVHVLCLGLDNSGKTTIINKLK 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 1e-08
Identities = 44/324 (13%), Positives = 80/324 (24%), Gaps = 102/324 (31%)
Query: 8 EREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQ 67
+L+ G SGK+ + V S +Q M
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALD-------------------VCLSYKVQCKM-------- 180
Query: 68 LKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLND 127
DF + L + + L L+ ++ + H S
Sbjct: 181 ---DFKIF--------WLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIH 228
Query: 128 SAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKK 187
S L L + Y VL V+ F++
Sbjct: 229 SIQAELRRL--LKSKPY-ENCLLVLLN-VQNAKAW-----------NAFNLS-------- 265
Query: 188 WIHC-------FEGVTAII-----FCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235
C F+ VT + ++L + L D E L K+
Sbjct: 266 ---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-------EVKSLL-----LKY 310
Query: 236 FMDTSIILFLNKNDLFQEKITKSPLTVC-----FPEYTDQKEIYTHFTCATDTSNIQFVF 290
L DL +E +T +P + + + + H C T+ I+
Sbjct: 311 -------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 291 DAVTDVIIKANLKDCGI-REEVKL 313
+ + + + +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHI 387
Score = 32.1 bits (72), Expect = 0.25
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 29/123 (23%)
Query: 172 HFKM-FDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230
H M F+ G + + K + FE F D ++M + I S + D I
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDA----FVDNFDCKDV-----QDMPKSILSKEEIDHI 54
Query: 231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVF 290
SK + ++ LF K Q+E+ F N +F+
Sbjct: 55 IMSKDAVSGTLRLF----WTLLSK---------------QEEMVQKFVEEVLRINYKFLM 95
Query: 291 DAV 293
+
Sbjct: 96 SPI 98
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 50.5 bits (121), Expect = 9e-08
Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 34/186 (18%)
Query: 123 YQLNDSAAYYLNALDRISQPNYIPTQQ-DVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQ 181
+ T D L + F ++ V GQ
Sbjct: 32 KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGE-------VKGFKTRFHLYTVPGQ 84
Query: 182 RSERKKWIHCFEGVTAIIFCVALSGYDS----VLAEDEEMNRMIESMKLFDSICNSKWFM 237
GV I+F DS + A E M M E++ +
Sbjct: 85 VFYNASRKLILRGVDGIVFVA-----DSAPNRLRANAESMRNMRENLAEYGLT-----LD 134
Query: 238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTD----QKEIYTHFTCATDTSNIQFVFDAV 293
D I++ +NK DL P + + + AT+ + V
Sbjct: 135 DVPIVIQVNKRDL--------PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186
Query: 294 TDVIIK 299
+ +++
Sbjct: 187 SRLVLA 192
Score = 32.4 bits (74), Expect = 0.12
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1 MPMVQWQERE--VKLLLLGAGESGKSTIVKQMKIIHETGYSKE 41
M + + RE K++ G G SGK+T +K + G E
Sbjct: 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGE 45
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 45.5 bits (108), Expect = 5e-06
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFE----GVTAIIFCVALSGYDSVLAE 213
+ + + + D G R K + V +IF V DS
Sbjct: 79 SQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV-----DS--TV 130
Query: 214 DEEMNRMIESMKLFDSI---CNSKWFMDTSIILFLNKNDLF 251
D + ++ + + I S I++ NK++LF
Sbjct: 131 DPK--KLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169
Score = 28.2 bits (63), Expect = 3.0
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 8 EREVKLLLLGAGESGKSTIVKQMK 31
+ +++ G SGK++++ +
Sbjct: 46 SYQPSIIIAGPQNSGKTSLLTLLT 69
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 45.0 bits (106), Expect = 8e-06
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 158 TTGIIETHFTFK-DLHFKMFDVGGQRSERKKWI---HCFEGVTAIIFCVALSGYDSVLAE 213
T I + + ++F+++D GQ F G A+I+ + D+
Sbjct: 55 TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI-----DAQDDY 109
Query: 214 DEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQE 253
E + R+ ++ + D + +F++K D +
Sbjct: 110 MEALTRLHITVSKAYKVN-----PDMNFEVFIHKVDGLSD 144
Score = 31.1 bits (70), Expect = 0.35
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 7 QEREVKLLLLGAGESGKSTIVK 28
Q + ++LL+G SGKS+I K
Sbjct: 17 QGSKPRILLMGLRRSGKSSIQK 38
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 45.1 bits (107), Expect = 8e-06
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFE----GVTAIIFCVALSGYDSVLAE 213
+ + + + D G R K + V +IF V DS
Sbjct: 43 SQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV-----DS--TV 94
Query: 214 DEEMNRMIESMKLFDSI---CNSKWFMDTSIILFLNKNDLF 251
D + ++ + + I S I++ NK++LF
Sbjct: 95 DPK--KLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133
Score = 27.0 bits (60), Expect = 6.8
Identities = 4/25 (16%), Positives = 14/25 (56%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQMK 31
+ + +++ G SGK++++ +
Sbjct: 9 KSYQPSIIIAGPQNSGKTSLLTLLT 33
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 42.8 bits (101), Expect = 4e-05
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 169 KDLHFKMFDVGGQRSERKK-WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-- 225
+ + D+ G S R + A++F V DS + R ++ +
Sbjct: 52 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV-----DSA---AFQ--REVKDVAEF 101
Query: 226 LFDSICNSKWFMDTSIILFL-NKNDLF 251
L+ + +S ++ +L NK D+
Sbjct: 102 LYQVLIDSMALKNSPSLLIACNKQDIA 128
Score = 30.1 bits (68), Expect = 0.66
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQMK 31
+ + +L +G +SGK+ + ++
Sbjct: 4 KSSQRAVLFVGLCDSGKTLLFVRLL 28
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 7e-05
Identities = 31/256 (12%), Positives = 69/256 (26%), Gaps = 76/256 (29%)
Query: 77 NADCARQFFTLASAA-EEGDLTP-DLVILMKRLWSDQGVQHCFHRSREYQLNDS------ 128
+A R TL+ + E L P + +L +Q + + + +D
Sbjct: 2 DAYSTRPL-TLSHGSLEHVLLVPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPAE 59
Query: 129 -AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHF-TFKDLHFKMF------DVGG 180
+L + + +P+ + VL + E + D+H +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIH--ALAAKLLQENDT 114
Query: 181 QRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS 240
+ K+ I + + + ++ S LF ++
Sbjct: 115 TLVKTKELIKNY--------------ITARIMAKRPFDKKSNS-ALFRAVGEGN----AQ 155
Query: 241 IILFLNKNDLF--QEKITKSPLTVCFPE----YTDQKEIYTHF-------------TCAT 281
++ +F Q F E Y + Y
Sbjct: 156 LVA------IFGGQ-----GNTDDYFEELRDLY----QTYHVLVGDLIKFSAETLSELIR 200
Query: 282 DTSNIQFVFDAVTDVI 297
T + + VF +++
Sbjct: 201 TTLDAEKVFTQGLNIL 216
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 39.6 bits (92), Expect = 7e-04
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 158 TTGIIETHFTF-KDLHFKMFDVGGQRS-----ERKKWIHCFEGVTAIIFCVALSGYDSVL 211
T + +H F ++ ++D GGQ K+ H F+ V +I + +
Sbjct: 38 TIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV-- 95
Query: 212 AEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQE 253
+++ +++K D I + L+K DL Q
Sbjct: 96 --LKDIEIFAKALKQLRKYS-----PDAKIFVLLHKMDLVQL 130
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 37.3 bits (86), Expect = 0.004
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 15/129 (11%)
Query: 122 EYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQ 181
+QLN+ + + L Y T+++ R R + T + F+ + G +
Sbjct: 62 NFQLNNQHKFNILIL-------YSTTRKERDRAREEHTSAVNKMFSRHN--EGDDQQGSR 112
Query: 182 RSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241
S + E V I+ + +DE + M + F S +
Sbjct: 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSG------RPLL 166
Query: 242 ILFLNKNDL 250
+L
Sbjct: 167 VLSCISQGD 175
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 36.2 bits (83), Expect = 0.011
Identities = 23/166 (13%), Positives = 56/166 (33%), Gaps = 29/166 (17%)
Query: 143 NYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWI---HCFEGVTAII 199
N P L + T+ HF+ + + ++ GQ + + F+ V A++
Sbjct: 22 NMQPLDTLYLES---TSNPSLEHFST-LIDLAVMELPGQLNYFEPSYDSERLFKSVGALV 77
Query: 200 FCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQE------ 253
+ + DS + + ++ + +I + ++K D E
Sbjct: 78 YVI-----DSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSEDFKVDA 127
Query: 254 --KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI 297
I + D ++ + T D S +++A + ++
Sbjct: 128 QRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS----IYEAFSRIV 169
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.13
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 213 EDEEMNRMIESMKLF--DS 229
E + + ++ S+KL+ DS
Sbjct: 18 EKQALKKLQASLKLYADDS 36
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 30.1 bits (67), Expect = 0.85
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 15/129 (11%)
Query: 122 EYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQ 181
+QLN+ + + L Y T+++ R R + T + F+ + G +
Sbjct: 147 NFQLNNQHKFNILIL-------YSTTRKERDRAREEHTSAVNKMFSRHNEGDD--QQGSR 197
Query: 182 RSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI 241
S + E V I+ + +DE + M + F S +
Sbjct: 198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSG------RPLL 251
Query: 242 ILFLNKNDL 250
+L
Sbjct: 252 VLSCISQGD 260
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 29.5 bits (67), Expect = 0.92
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRP 48
E++L +LG SGKS+++ + + +
Sbjct: 6 PELRLGVLGDARSGKSSLIHR--------FLTGSYQVLEK 37
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 29.5 bits (67), Expect = 1.00
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQ 29
Q E+K+ ++G SGKS +V +
Sbjct: 17 QGPELKVGIVGNLSSGKSALVHR 39
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 28.4 bits (64), Expect = 2.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQ 29
Q + ++++ GAG GKS++V +
Sbjct: 5 QSNDYRVVVFGAGGVGKSSLVLR 27
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 28.4 bits (64), Expect = 2.7
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 218 NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHF 277
N MIE + I+ LNK D +T+ + E+ + + I +
Sbjct: 41 NPMIE-----------DILKNKPRIMLLNKADKADAAVTQQ-----WKEHFENQGIRSLS 84
Query: 278 TCATDTSNIQFVFDAVTDVI 297
+ + + + A +++
Sbjct: 85 INSVNGQGLNQIVPASKEIL 104
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.0 bits (63), Expect = 3.1
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 191 CFEGVTAIIFCVALSGYDSVLAEDEEMNR-MIESMK 225
G A+I + S E R ++ +MK
Sbjct: 64 TVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMK 99
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 28.0 bits (63), Expect = 3.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQ 29
+ EVKL + G GKS +V +
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVR 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 27.5 bits (62), Expect = 3.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 1 MPMVQWQEREVKLLLLGAGESGKSTIVKQ 29
MP Q + K+ +LG GKS++ Q
Sbjct: 1 MP----QSKSRKIAILGYRSVGKSSLTIQ 25
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 27.7 bits (62), Expect = 3.9
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 44/176 (25%)
Query: 142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC 201
NY+PT + + + + ++D G + A++ C
Sbjct: 34 ENYVPTVFENYTASFEIDT--------QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 85
Query: 202 VALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM-------DTSIILFLNKNDLFQEK 254
+S ++ DS+ KW +T ++L K+DL +
Sbjct: 86 FDISRPET-----------------LDSV-LKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 255 ITKSPLTVCF--PEYTDQ-----KEI--YTHFTC-ATDTSN-IQFVFDAVTDVIIK 299
T L+ P DQ K+I T+ C A + N ++ +F T +
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 27.5 bits (62), Expect = 4.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQ 29
EV L +LG +GKS + +
Sbjct: 18 GPLEVNLAILGRRGAGKSALTVK 40
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 27.7 bits (62), Expect = 4.1
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIY----THF-TCATDTSNIQFVFDA 292
+ +IL D+ EK K+ ++ E +++ HF ++ + +
Sbjct: 112 SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171
Query: 293 VTDVIIKANLKD 304
+ + + ++D
Sbjct: 172 IINESLNFKIRD 183
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 27.5 bits (61), Expect = 4.2
Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 36/149 (24%)
Query: 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228
+ + ++D G C+ A++ C +S ++ D
Sbjct: 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET-----------------VD 115
Query: 229 SICNSKWFM-------DTSIILFLNKNDL-----FQEKITKSPLTVCFPEYTDQ--KEI- 273
S KW T ++L K DL +++ E K++
Sbjct: 116 SALK-KWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174
Query: 274 -YTHFTC--ATDTSNIQFVFDAVTDVIIK 299
+ T +I +F + + +
Sbjct: 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLN 203
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA
binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39
PDB: 1xsd_A
Length = 126
Score = 26.9 bits (59), Expect = 4.4
Identities = 11/103 (10%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
E+ + + E TI + +++ K + YS++I+ ++
Sbjct: 28 NEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY-KSENIYFYSSNIKEDDIKMKTAKTF 86
Query: 69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQ 111
+ + A+ +L + ++ + +D
Sbjct: 87 LNKLYGGDMKS------LVLNFAKNEELNNKEIEELRDILNDI 123
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 28.0 bits (62), Expect = 4.8
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 9 REVKLLLLGAGESGKSTIVKQMK 31
+E+K+ L+G G +GK++++KQ+
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLI 62
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial
antibiotic resistance, MECI protein, transcriptional
regulatory element; 2.4A {Staphylococcus aureus} SCOP:
a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Length = 123
Score = 26.9 bits (59), Expect = 5.5
Identities = 8/103 (7%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
+ + + TI + +++ G+ + + + Y + ++ +
Sbjct: 28 NNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK-KDNKIFQYYSLVEESDIKYKTSKNF 86
Query: 69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQ 111
+ + E+ DL+ D + ++ + + +
Sbjct: 87 INKVYKGGFNS------LVLNFVEKEDLSQDEIEELRNILNKK 123
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 27.1 bits (61), Expect = 5.8
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
+ ++ + GAG GKS++V +
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLR 22
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.2 bits (61), Expect = 6.2
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 1 MPMVQWQEREVKLLLLGAGESGKSTIVKQ 29
MP+V R K+++LG GK+++ Q
Sbjct: 19 MPLV----RYRKVVILGYRCVGKTSLAHQ 43
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region;
RNA, ligase, lysine adenylate; HET: APK; 2.40A
{Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Length = 335
Score = 27.5 bits (60), Expect = 6.3
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 106 RLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGI---- 161
L ++ C R+ + Y L + + I QD++ T +
Sbjct: 43 SLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYA--DSIKAVQDIMETSAVVSYQVFGE 100
Query: 162 -----IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAI 198
I+ + + D F +FD+ + +
Sbjct: 101 FAGPGIQKNVDYGDKDFYVFDIIVTTESGDVTYVDDYMMESF 142
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 26.7 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
RE KL++LG+G GKS + Q
Sbjct: 2 REYKLVVLGSGGVGKSALTVQ 22
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin,
metal-binding secreted; HET: NAG; 1.50A {Homo sapiens}
PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A*
3d5o_A* 2w08_A*
Length = 204
Score = 27.3 bits (60), Expect = 6.5
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 260 LTVCFPEYTDQKEIYTHFTCATDTSNIQFVF 290
T+CF Y+D Y+ F+ T + + +
Sbjct: 33 FTLCFRAYSDLSRAYSLFSYNTQGRDNELLV 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 27.2 bits (61), Expect = 6.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
E KL+++GAG GKS + Q
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQ 40
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 26.7 bits (60), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
RE K+++LG+G GKS + Q
Sbjct: 2 REYKVVVLGSGGVGKSALTVQ 22
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold,
nucleotide-binding domain, rossmann fold; HET: NAG BMA
MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP:
c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Length = 348
Score = 27.3 bits (60), Expect = 7.5
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 210 VLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLN---KNDLFQEKITK 257
L ++E+ ++ S+K ++ N K+ +FLN + F+E +TK
Sbjct: 33 TLVRNKELKGLLSSIKYVENKINKKFPYP---WVFLNDEPFTEEFKEAVTK 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 26.7 bits (60), Expect = 8.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
E KL+++GAG GKS + Q
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQ 22
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 26.4 bits (59), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
E KL+++GA GKS + Q
Sbjct: 3 TEYKLVVVGADGVGKSALTIQ 23
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM
barrel, structural genomics, NEW YORK SGX center for
structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Length = 380
Score = 27.1 bits (61), Expect = 9.5
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 273 IYTHFTCA----TDTSNIQF-VFDAVTDVIIKANLKDC 305
I+THF + Q + + D +I
Sbjct: 164 IFTHFASSDNPDDHYFQRQKNRWYELIDGLIMPRYVHV 201
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 26.3 bits (59), Expect = 10.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 3 MVQWQEREVKLLLLGAGESGKSTIVKQ 29
M KL+++G G GKS + Q
Sbjct: 2 MDPPPSETHKLVVVGGGGVGKSALTIQ 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.406
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,754,231
Number of extensions: 273847
Number of successful extensions: 840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 96
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)