RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8318
(313 letters)
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 165 bits (420), Expect = 2e-52
Identities = 92/121 (76%), Positives = 105/121 (86%)
Query: 38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLT 97
YS+EEC+QY+ VVYSN+IQS++AIIRAMG+LKIDFGD AD ARQ F LA AAEEG +T
Sbjct: 1 YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGFMT 60
Query: 98 PDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVK 157
+L ++KRLW D GVQ CF+RSREYQLNDSAAYYLN LDRI+QPNYIPTQQDVLRTRVK
Sbjct: 61 AELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVK 120
Query: 158 T 158
T
Sbjct: 121 T 121
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 121
Score = 160 bits (407), Expect = 3e-50
Identities = 60/121 (49%), Positives = 86/121 (71%)
Query: 38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLT 97
YS EEC ++ ++Y N++QS++AI+RAM L I +GD D AR+ +A EEG +
Sbjct: 1 YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMP 60
Query: 98 PDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVK 157
++ +++RLW D G+Q CF R+ EYQLNDSA YYL+ L+R+ P Y+PT+QDVLR+RVK
Sbjct: 61 KEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVK 120
Query: 158 T 158
T
Sbjct: 121 T 121
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 144 bits (364), Expect = 7e-44
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLT 97
YS E+ + +VY N ++ A+IRAM LKI + N A+ + +
Sbjct: 1 YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV-DVEKVSAFE 59
Query: 98 PDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTR 155
V +K LW+D G+Q C+ R REYQL+DS YYLN LDR++ P+Y+PTQQDVLR R
Sbjct: 60 NPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVR 117
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 143 bits (362), Expect = 2e-43
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFF-------TLASA 90
+ + E++RP +YSN I+ + ++ A +L I +GD+KN + A
Sbjct: 1 FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQG 60
Query: 91 AEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQD 150
E + + ++ LW D G+Q+ + R RE+QL +S Y+L+ LD++ P+YIP+QQD
Sbjct: 61 MVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQD 120
Query: 151 VLRTR 155
+L R
Sbjct: 121 ILLAR 125
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 142 bits (360), Expect = 3e-43
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAE---EG 94
+ ++ ++R ++ N ++ ++ A +L I + +N + A E
Sbjct: 1 FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGMFLMAFENKAGLPVEP 60
Query: 95 DLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRT 154
V + LW D G++ F R E+QL +S Y+L+ LDRI Q NY P++QD+L
Sbjct: 61 ATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPSKQDILLA 120
Query: 155 R 155
R
Sbjct: 121 R 121
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 133 bits (335), Expect = 2e-38
Identities = 76/189 (40%), Positives = 99/189 (52%), Gaps = 40/189 (21%)
Query: 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDE 215
V T+GI ET F ++F MFDVGGQR ER+KWI CF VTAIIF VA S Y+ V+ ED
Sbjct: 32 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 91
Query: 216 EMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI--TKSPLTVCFPEYTD---- 269
+ NR+ E++ LF SI N++W S+ILFLNK DL EK+ KS + FPE+
Sbjct: 92 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTP 151
Query: 270 ----------------------------------QKEIYTHFTCATDTSNIQFVFDAVTD 295
+ Y HFTCA DT NI+ VF+ D
Sbjct: 152 EDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRD 211
Query: 296 VIIKANLKD 304
+I + +L+
Sbjct: 212 IIQRMHLRQ 220
Score = 32.8 bits (74), Expect = 0.034
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 8 EREVKLLLLGAGESGKSTIVKQMKIIH 34
+LLLLGAGESGKSTIVKQM+I+H
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILH 30
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 125 bits (316), Expect = 8e-37
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 48 PVVYSNSIQSLMAIIRAMGQLK--IDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMK 105
+ +N +++ I+ AM L ++ + +N ++ + + D P+ K
Sbjct: 6 QDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNV-PDFDFPPEFYEHAK 64
Query: 106 RLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTR 155
LW D+GV+ C+ RS EYQL D A Y+L+ +D I Q +Y+P+ QD+LR R
Sbjct: 65 ALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 114
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 119 bits (298), Expect = 3e-33
Identities = 72/176 (40%), Positives = 100/176 (56%), Gaps = 24/176 (13%)
Query: 152 LRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVL 211
+ + T GI E F K++ FKM DVGGQRSERK+W CF+ VT+I+F V+ S +D VL
Sbjct: 25 IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 84
Query: 212 AEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD-- 269
ED + NR+ ES+ +F++I N++ F + SIILFLNK DL +EK+ + F E+
Sbjct: 85 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDP 144
Query: 270 ----------------------QKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303
Q+ +Y HFT A +T NI+ VF V D I+ NLK
Sbjct: 145 HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 200
Score = 38.7 bits (89), Expect = 3e-04
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHET 36
R VK+LLLGAGESGKST +KQM+IIH
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMRIIHGQ 28
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 108 bits (270), Expect = 4e-29
Identities = 90/171 (52%), Positives = 106/171 (61%), Gaps = 23/171 (13%)
Query: 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDE 215
V TTGIIE F + + F+M DVGGQRSER+KWIHCFE VT+I+F VALS YD VL E +
Sbjct: 30 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 89
Query: 216 EMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD------ 269
NRM ES LF +I WF ++S+ILFLNK DL +EKI S L FPEY
Sbjct: 90 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQ 149
Query: 270 -----------------QKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303
K IY+HFTCATDT NI+FVF AV D I++ NLK
Sbjct: 150 AAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 200
Score = 38.4 bits (88), Expect = 4e-04
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHETGYS 39
RE+KLLLLG GESGKST +KQM+IIH +G
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIHGSGVP 31
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 104 bits (259), Expect = 2e-27
Identities = 127/167 (76%), Positives = 133/167 (79%), Gaps = 23/167 (13%)
Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEM 217
TGI+ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS YD VLAEDEEM
Sbjct: 29 GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 88
Query: 218 NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT--------- 268
NRM ESMKLFDSICN+KWF DTSIILFLNK DLF+EKI KSPLT+C+PEY
Sbjct: 89 NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA 148
Query: 269 --------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301
D KEIYTHFTCATDT N+QFVFDAVTDVIIK N
Sbjct: 149 AYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 195
Score = 38.0 bits (87), Expect = 6e-04
Identities = 28/29 (96%), Positives = 28/29 (96%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHETG 37
REVKLLLLGAGESGKSTIVKQMKIIHE G
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIHEAG 29
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 41.9 bits (97), Expect = 3e-05
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 10/144 (6%)
Query: 154 TRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAE 213
T + T G T+K++ F ++DVGGQ R W H + G +IF V +
Sbjct: 39 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA-------- 90
Query: 214 DEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI 273
+ +R+ E+ + I N + D I++F NK DL +
Sbjct: 91 --DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 148
Query: 274 YTHFTCATDTSNIQFVFDAVTDVI 297
Y +CAT + +T
Sbjct: 149 YVQPSCATSGDGLYEGLTWLTSNY 172
Score = 29.9 bits (66), Expect = 0.25
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 9 REVKLLLLGAGESGKSTIVKQMK 31
+E+++L+LG +GK+TI+ ++K
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLK 33
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 37.9 bits (87), Expect = 6e-04
Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 21/162 (12%)
Query: 142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC 201
+YI T + + K + +++D GQ R + G II
Sbjct: 33 NDYISTIGVDFKIK-------TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 85
Query: 202 VALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLT 261
++ +S +K++ + +L NK DL +++ + +
Sbjct: 86 YDVTDQES-----------FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 134
Query: 262 VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303
F + + T A D++N++ F + I ++ +
Sbjct: 135 KEFADANK---MPFLETSALDSTNVEDAFLTMARQIKESMSQ 173
Score = 25.2 bits (54), Expect = 8.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
KLLL+G GKS ++ +
Sbjct: 8 KLLLIGNSGVGKSCLLLR 25
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 37.1 bits (85), Expect = 8e-04
Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 22/158 (13%)
Query: 142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC 201
P++I T + + K + +++D GQ R + G II
Sbjct: 29 PSFITTIGIDFKIK-------TVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81
Query: 202 VALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLT 261
++ + + + E + D T+
Sbjct: 82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD---------------METRVVTA 126
Query: 262 VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299
+ I + A + N+ +F + +I +
Sbjct: 127 DQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164
Score = 25.1 bits (54), Expect = 8.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
K+LL+G GKS ++ +
Sbjct: 4 KILLIGDSGVGKSCLLVR 21
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 34.9 bits (79), Expect = 0.005
Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 16/161 (9%)
Query: 142 PNYIPTQQDVLRTR---VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAI 198
P +I T R + G + +H +++D GQ R F
Sbjct: 32 PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGF 91
Query: 199 IFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKS 258
+ ++ + + + + + + + +
Sbjct: 92 LLMF-------------DLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE 138
Query: 259 PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299
E D+ I T A N++ + + D+I+K
Sbjct: 139 VNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179
Score = 26.4 bits (57), Expect = 3.5
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 6/142 (4%)
Query: 11 VKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKI 70
+KLL LG GK+T + + + + + A K
Sbjct: 6 IKLLALGDSGVGKTTFLYRYT----DNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
Query: 71 DFGDHKNADCARQ--FFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
+ D A Q F +L +A + L+ + S V++ + + ++
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121
Query: 129 AAYYLNALDRISQPNYIPTQQD 150
L ++
Sbjct: 122 PDIVLIGNKADLPDQREVNERQ 143
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 34.5 bits (78), Expect = 0.008
Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 17/164 (10%)
Query: 136 LDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGV 195
L + + + + + I + K + +++D GQ R + G
Sbjct: 22 LHQFIEKKFKDDSNHTIGVEFGSKII---NVGGKYVKLQIWDTAGQERFRSVTRSYYRGA 78
Query: 196 TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI 255
+ D ++ + + + IIL NK DL ++
Sbjct: 79 AGALLVY-----------DITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE 127
Query: 256 TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299
+ + + E+ T A N++ F I+
Sbjct: 128 VT---FLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168
Score = 25.3 bits (54), Expect = 8.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
K L++G +GKS ++ Q
Sbjct: 7 KFLVIGNAGTGKSCLLHQ 24
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 34.5 bits (78), Expect = 0.008
Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 14/135 (10%)
Query: 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM 224
+ K + +++D GQ R + G I D ++
Sbjct: 48 YRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY-----------DITNEESFNAV 96
Query: 225 KLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTS 284
+ + + + + + ++L NK + + + + D A D
Sbjct: 97 QDWSTQIKTYSWDNAQVLLVGNKC---DMEDERVVSSERGRQLADHLGFEFFEASAKDNI 153
Query: 285 NIQFVFDAVTDVIIK 299
N++ F+ + DVI +
Sbjct: 154 NVKQTFERLVDVICE 168
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 33.7 bits (76), Expect = 0.013
Identities = 22/164 (13%), Positives = 49/164 (29%), Gaps = 17/164 (10%)
Query: 136 LDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGV 195
L R + + P + K I K ++D GQ R + G
Sbjct: 24 LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK---LAIWDTAGQERFRTLTPSYYRGA 80
Query: 196 TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI 255
+I ++ + ++ + + D +L NK D ++
Sbjct: 81 QGVILVYDVT----------RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREV 130
Query: 256 TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299
+ ++ + + A +Q F+ + + II+
Sbjct: 131 DR----NEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170
Score = 25.6 bits (55), Expect = 6.9
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 10 EVKLLLLGAGESGKSTIVKQ 29
+K+L++G GKS+++ +
Sbjct: 7 TLKILIIGESGVGKSSLLLR 26
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 33.5 bits (75), Expect = 0.017
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 10/144 (6%)
Query: 154 TRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAE 213
T + T G +K++ F ++DVGGQ R W H F+ +IF V + + V
Sbjct: 27 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 86
Query: 214 DEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI 273
EE+ RM+ D +++F NK DL +
Sbjct: 87 REELMRMLAED----------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW 136
Query: 274 YTHFTCATDTSNIQFVFDAVTDVI 297
Y TCAT + D +++ +
Sbjct: 137 YIQATCATSGDGLYEGLDWLSNQL 160
Score = 26.2 bits (56), Expect = 4.3
Identities = 7/20 (35%), Positives = 16/20 (80%)
Query: 12 KLLLLGAGESGKSTIVKQMK 31
++L++G +GK+TI+ ++K
Sbjct: 2 RILMVGLDAAGKTTILYKLK 21
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 32.6 bits (73), Expect = 0.029
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 10/145 (6%)
Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEM 217
T G ++K+L ++D+GGQ S R W + A+IF V + D + +E+
Sbjct: 48 TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKEL 107
Query: 218 NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHF 277
+ M++ +L D+ ++F NK D +
Sbjct: 108 HLMLQEEELQDAAL----------LVFANKQDQPGALSASEVSKELNLVELKDRSWSIVA 157
Query: 278 TCATDTSNIQFVFDAVTDVIIKANL 302
+ A I D + DVI + L
Sbjct: 158 SSAIKGEGITEGLDWLIDVIKEEQL 182
Score = 29.6 bits (65), Expect = 0.38
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 6 WQEREVKLLLLGAGESGKSTIVKQMK 31
+E+++L+LG +GK+TI+ +++
Sbjct: 13 GSNKELRILILGLDGAGKTTILYRLQ 38
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.6 bits (70), Expect = 0.075
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 11/135 (8%)
Query: 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM 224
+ F+++D GQ + A + ++ S
Sbjct: 46 TINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQS-----------FIKA 94
Query: 225 KLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTS 284
+ + + + D I L NK D+ QE + + ++K + T A
Sbjct: 95 RHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154
Query: 285 NIQFVFDAVTDVIIK 299
N+ VF + + I
Sbjct: 155 NVNDVFLGIGEKIPL 169
Score = 26.2 bits (56), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 11 VKLLLLGAGESGKSTIVKQ 29
+KL+LLG GKS+IV +
Sbjct: 4 IKLVLLGEAAVGKSSIVLR 22
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.1 bits (69), Expect = 0.10
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 8 EREVKLLLLGAGESGKSTIVKQMK 31
++EV++LLLG +GK+T++KQ+
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLA 37
Score = 28.0 bits (61), Expect = 1.2
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 10/140 (7%)
Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEM 217
T G + ++D+GGQR R W FE +I+ + +
Sbjct: 47 TQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS----------ADR 96
Query: 218 NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHF 277
R E+ + + + +++F NK DL +
Sbjct: 97 KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156
Query: 278 TCATDTSNIQFVFDAVTDVI 297
A +Q + V +
Sbjct: 157 CSALTGEGVQDGMNWVCKNV 176
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 30.8 bits (68), Expect = 0.12
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 9 REVKLLLLGAGESGKSTIVKQMK 31
RE++LL+LG +GK+TI+K+
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFN 23
Score = 28.5 bits (62), Expect = 0.64
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 10/142 (7%)
Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEM 217
T G + ++DVGGQ+S R W + FE +I+ V + +
Sbjct: 33 TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DR 82
Query: 218 NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHF 277
RM + + S+ + ++++F NK DL + +
Sbjct: 83 QRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQG 142
Query: 278 TCATDTSNIQFVFDAVTDVIIK 299
A ++ D + D I
Sbjct: 143 CSAVTGEDLLPGIDWLLDDISS 164
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.7 bits (68), Expect = 0.15
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 16/116 (13%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
RE K+++LG+G GKS + Q + E+Y P + + +
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFV-------TGTFIEKYDPTIEDFYRKEIEVDSSPSVLE 54
Query: 69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQ 124
+D + R + IL+ L + Q Q +
Sbjct: 55 ILDTAGTEQFASMRDLYI---------KNGQGFILVYSLVNQQSFQDIKPMRDQII 101
Score = 27.2 bits (59), Expect = 1.7
Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 13/144 (9%)
Query: 154 TRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAE 213
++ E ++ D G + I +L
Sbjct: 34 PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSL--------- 84
Query: 214 DEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI 273
+ + D I K + +IL NK DL E+ S E +
Sbjct: 85 -VNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE---EWGC 140
Query: 274 YTHFTCATDTSNIQFVFDAVTDVI 297
T A + + +F + +
Sbjct: 141 PFMETSAKSKTMVDELFAEIVRQM 164
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 30.1 bits (67), Expect = 0.20
Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 14/131 (10%)
Query: 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228
K + +++D GQ R + G I+ ++ S ++++ +
Sbjct: 53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS-----------FDNIRNWI 101
Query: 229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF 288
D ++ NK D+ ++ I T A N++
Sbjct: 102 RNIEEHASADVEKMILGNKCDVNDKRQVSKERGEK---LALDYGIKFMETSAKANINVEN 158
Query: 289 VFDAVTDVIIK 299
F + I
Sbjct: 159 AFFTLARDIKA 169
Score = 25.5 bits (55), Expect = 7.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 12 KLLLLGAGESGKSTIVKQMK 31
KLLL+G GK+ ++ +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFS 27
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.1 bits (66), Expect = 0.28
Identities = 8/78 (10%), Positives = 25/78 (32%)
Query: 8 EREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQ 67
++ KL+ LG +GK+T++ +K + + + + + +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 70
Query: 68 LKIDFGDHKNADCARQFF 85
++ +
Sbjct: 71 RRVWKNYLPAINGIVFLV 88
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 29.7 bits (65), Expect = 0.30
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 9 REVKLLLLGAGESGKSTIVKQMK 31
RE+++L+LG +GK+TI+ +++
Sbjct: 4 REMRILILGLDGAGKTTILYRLQ 26
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.4 bits (65), Expect = 0.41
Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 17/164 (10%)
Query: 136 LDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGV 195
+ R +Q + P Q T I + + +++D GQ R +
Sbjct: 22 VRRFTQGLFPPGQGA---TIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 78
Query: 196 TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI 255
A+I ++ + I ++++ + + ++
Sbjct: 79 NALILTYDIT----------CEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREV 128
Query: 256 TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299
++ E+++ +++Y T A ++ N++ +F + +I
Sbjct: 129 SQ----QRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168
Score = 25.2 bits (54), Expect = 9.1
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
K++L+G GK+ +V++
Sbjct: 7 KIVLIGNAGVGKTCLVRR 24
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.2 bits (64), Expect = 0.45
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQ 29
+ +K +++G G GK+ ++
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLIS 24
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 0.46
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSN 53
+E K++++G +GK+TI+ Q + S +V +N
Sbjct: 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58
Score = 26.1 bits (56), Expect = 4.4
Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 10/140 (7%)
Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEM 217
T G + F M+D+GGQ S R W + +I V +
Sbjct: 46 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD----------STDR 95
Query: 218 NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHF 277
R+ + + + + +++F NK D+ + + +
Sbjct: 96 ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 155
Query: 278 TCATDTSNIQFVFDAVTDVI 297
CA + + + +
Sbjct: 156 CCALTGEGLCQGLEWMMSRL 175
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.9 bits (63), Expect = 0.49
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 1/113 (0%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQ-MKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAM 65
Q + K+ +LG GKS++ Q ++ Y + ++ N + + ++
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTA 60
Query: 66 GQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFH 118
GQ + + + + S VI K L VQ
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 113
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.8 bits (63), Expect = 0.50
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
RE+K+ LLG GKS+I+ +
Sbjct: 3 RELKVCLLGDTGVGKSSIMWR 23
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.9 bits (63), Expect = 0.55
Identities = 12/142 (8%), Positives = 34/142 (23%)
Query: 152 LRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVL 211
+ + E + + G + + +
Sbjct: 18 FVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 77
Query: 212 AEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK 271
+ + ++ S ++ + +++ NK DL K + +
Sbjct: 78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR 137
Query: 272 EIYTHFTCATDTSNIQFVFDAV 293
EI + + NI +
Sbjct: 138 EICCYSISCKEKDNIDITLQWL 159
Score = 27.7 bits (60), Expect = 1.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 10 EVKLLLLGAGESGKSTIVKQMK 31
E++L L+G SGK+T V +
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIA 23
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.1 bits (61), Expect = 0.95
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 10 EVKLLLLGAGESGKSTIVKQ 29
EVKL + G GKS +V +
Sbjct: 2 EVKLAIFGRAGVGKSALVVR 21
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
RE KL++LG+G GKS + Q
Sbjct: 2 REYKLVVLGSGGVGKSALTVQ 22
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.9 bits (61), Expect = 1.1
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228
K + +++D GQ R+ + G + ++ + + + +K
Sbjct: 51 KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT-------YENVERWLKELR 103
Query: 229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF 288
+S + I+L NK+DL + + F E + I T A D++N++
Sbjct: 104 DHADS----NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFI---ETSALDSTNVEE 156
Query: 289 VFDAVTDVIIK 299
F + I +
Sbjct: 157 AFKNILTEIYR 167
Score = 26.4 bits (57), Expect = 4.1
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 12 KLLLLGAGESGKSTIVKQM--KIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQ 67
K++L+G GKS ++ + + S E + + I GQ
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.0 bits (61), Expect = 1.1
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 14/135 (10%)
Query: 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM 224
+ K ++ ++D GQ + I ++ DS + +
Sbjct: 46 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS-----------FQKV 94
Query: 225 KLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTS 284
K + + + + NK DL +E+ Y + + T A
Sbjct: 95 KNWVKELRKMLGNEICLCIVGNKIDLEKERHVS---IQEAESYAESVGAKHYHTSAKQNK 151
Query: 285 NIQFVFDAVTDVIIK 299
I+ +F + +I+
Sbjct: 152 GIEELFLDLCKRMIE 166
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.1 bits (61), Expect = 1.2
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 14 LLLGAGESGKSTIVKQM--KIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKID 71
L+ G +GKS + Q+ +I + PV+Y + AI + L
Sbjct: 33 ALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAH 92
Query: 72 FGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRS 120
+ A ++ + +G + +
Sbjct: 93 LSAEERQAVADGLLIQPLIGSLPNIMAPEWF-DGLKRAAEGRRLMVLDT 140
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.6 bits (60), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 9 REVKLLLLGAGESGKSTIVKQM 30
E KL+++GAG GKS + Q+
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQL 23
Score = 26.1 bits (56), Expect = 5.0
Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 14/135 (10%)
Query: 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM 224
+ + D GQ + A++ S +
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS----------FEDIH 94
Query: 225 KLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTS 284
+ + I K D ++L NK DL + + I T A
Sbjct: 95 QYREQIKRVKDSDDVPMVLVGNKCDLAARTVESR----QAQDLARSYGIPYIETSAKTRQ 150
Query: 285 NIQFVFDAVTDVIIK 299
++ F + I +
Sbjct: 151 GVEDAFYTLVREIRQ 165
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.5 bits (60), Expect = 1.6
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 12 KLLLLGAGESGKSTIVKQM--KIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLK 69
K +++G GKS ++ Q K E ++ + + + I GQ +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65
Query: 70 ---IDFGDHKNADCARQFFTLAS 89
+ ++ A A + +
Sbjct: 66 FRAVTRSYYRGAAGALMVYDITR 88
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 1.8
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 14/135 (10%)
Query: 165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM 224
+ F+++D GQ + G A I +
Sbjct: 49 CLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYD-------------ITNEESFA 95
Query: 225 KLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTS 284
+ + + + +I++ L+ N D ++ T A +
Sbjct: 96 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLF-METSAKTSM 154
Query: 285 NIQFVFDAVTDVIIK 299
N+ +F A+ + K
Sbjct: 155 NVNEIFMAIAKKLPK 169
Score = 25.0 bits (53), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
KL+LLG GKS++V +
Sbjct: 8 KLVLLGESAVGKSSLVLR 25
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.9 bits (58), Expect = 2.1
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 9 REVKLLLLGAGESGKSTIVKQMK 31
R K++++G GK+ + +
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFC 23
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.9 bits (58), Expect = 2.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
KL+++G G GKS + Q
Sbjct: 5 ETHKLVVVGGGGVGKSALTIQ 25
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.8 bits (58), Expect = 2.4
Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 14/128 (10%)
Query: 172 HFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231
+M+D GQ R + A++ ++ S + + E + ++
Sbjct: 57 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 116
Query: 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFD 291
+D++ + + D + + + T A N+ F
Sbjct: 117 LLGNKVDSAHERVVKREDGEK--------------LAKEYGLPFMETSAKTGLNVDLAFT 162
Query: 292 AVTDVIIK 299
A+ + +
Sbjct: 163 AIAKELKR 170
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (58), Expect = 2.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 12 KLLLLGAGESGKSTIVKQMK 31
KLL LG +GK+T++ +K
Sbjct: 2 KLLFLGLDNAGKTTLLHMLK 21
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.9 bits (58), Expect = 2.7
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 9 REVKLLLLGAGESGKSTIVKQ 29
+ +K +++G G GK+ ++
Sbjct: 2 QTIKCVVVGDGAVGKTCLLIS 22
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.5 bits (57), Expect = 3.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 10 EVKLLLLGAGESGKSTIVKQ 29
E++L +LG SGKS+++ +
Sbjct: 5 ELRLGVLGDARSGKSSLIHR 24
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 3.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 7 QEREVKLLLLGAGESGKSTIVKQ 29
+ + +L+++G G GKS + Q
Sbjct: 2 MQEKYRLVVVGGGGVGKSALTIQ 24
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 26.2 bits (56), Expect = 4.1
Identities = 6/19 (31%), Positives = 16/19 (84%)
Query: 11 VKLLLLGAGESGKSTIVKQ 29
+K++++G G GKS+++++
Sbjct: 3 IKMVVVGNGAVGKSSMIQR 21
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.1 bits (56), Expect = 4.2
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 10 EVKLLLLGAGESGKSTIVKQ 29
+ ++ + GAG GKS++V +
Sbjct: 2 DYRVAVFGAGGVGKSSLVLR 21
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 235
Score = 26.4 bits (57), Expect = 4.3
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 193 EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII 242
+ V A + VA D + ++ I +K+ + M
Sbjct: 120 DFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQAD 169
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 25.8 bits (55), Expect = 5.2
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 11 VKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKI 70
K++++G + GK+ ++ E Y P V+ N S + +
Sbjct: 3 CKIVVVGDSQCGKTALLHVFA-------KDCFPENYVPTVFENYTASFEIDTQRIELSLW 55
Query: 71 DFGDHKNADCARQFF 85
D D R
Sbjct: 56 DTSGSPYYDNVRPLS 70
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 25.8 bits (55), Expect = 5.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 10 EVKLLLLGAGESGKSTIVKQ 29
KL+++G G GKS + Q
Sbjct: 4 TYKLVVVGDGGVGKSALTIQ 23
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 25.6 bits (55), Expect = 6.0
Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 19/119 (15%)
Query: 12 KLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAII--RAMGQLK 69
K +++G GKS ++ Q K + + ++ I + Q+
Sbjct: 5 KYIIIGDTGVGKSCLLLQFT-------DKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 57
Query: 70 IDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
G R ++ A +L+ + + H + + + S
Sbjct: 58 DTAGQESFRSITRSYYRGA----------AGALLVYDITRRETFNHLTSWLEDARQHSS 106
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 25.7 bits (55), Expect = 6.1
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
K++++G+G GKS + Q
Sbjct: 6 KVIMVGSGGVGKSALTLQ 23
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 25.8 bits (55), Expect = 6.5
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
K+++LG GK++++ Q
Sbjct: 4 KVIILGDSGVGKTSLMNQ 21
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 25.9 bits (57), Expect = 6.5
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 210 VLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL---FQEKITK 257
L ++E+ ++ S+K ++ N K+ +FLN F+E +TK
Sbjct: 24 TLVRNKELKGLLSSIKYVENKINKKFPYP---WVFLNDEPFTEEFKEAVTK 71
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 25.7 bits (55), Expect = 6.7
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
KL+ LG GK++++ +
Sbjct: 2 KLVFLGEQSVGKTSLITR 19
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 25.4 bits (54), Expect = 7.5
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 12 KLLLLGAGESGKSTIVKQM---KIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQ 67
K+++LG GK++++ + K + + + V + M + GQ
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Score = 25.4 bits (54), Expect = 8.2
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 8/130 (6%)
Query: 172 HFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC 231
+++D GQ + + + G + ++ S + F
Sbjct: 53 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS-------FENIKSWRDEFLVHA 105
Query: 232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFD 291
N ++ NK D + K S +I T A + N+ F+
Sbjct: 106 NVNSPETFPFVILGNKIDAEESKKIVSE-KSAQELAKSLGDIPLFLTSAKNAINVDTAFE 164
Query: 292 AVTDVIIKAN 301
+ ++ N
Sbjct: 165 EIARSALQQN 174
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 25.3 bits (54), Expect = 8.3
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 9 REVKLLLLGAGESGKST----IVKQMKIIH 34
+ V+ +LLG +GK T + K + H
Sbjct: 2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCH 31
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 25.3 bits (54), Expect = 8.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
K++LLG G GKS+++ +
Sbjct: 8 KVILLGDGGVGKSSLMNR 25
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 25.3 bits (54), Expect = 8.7
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
K +++G G GK+ ++
Sbjct: 11 KCVVVGDGAVGKTCLLMS 28
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 25.1 bits (53), Expect = 9.4
Identities = 11/74 (14%), Positives = 26/74 (35%)
Query: 12 KLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKID 71
K+LLLGA GKS + + + + ++ Y + + ++ + + Q
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 72 FGDHKNADCARQFF 85
+ +
Sbjct: 63 WLPGHCMAMGDAYV 76
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.0 bits (53), Expect = 9.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 12 KLLLLGAGESGKSTIVKQ 29
KL+L+G G +GK+T VK+
Sbjct: 5 KLVLVGDGGTGKTTFVKR 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.406
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,172,317
Number of extensions: 53288
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 120
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.8 bits)