Query psy8319
Match_columns 330
No_of_seqs 193 out of 1304
Neff 7.4
Searched_HMMs 46136
Date Sat Aug 17 00:40:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1055|consensus 100.0 4.2E-43 9.2E-48 351.3 4.8 284 1-327 360-658 (865)
2 KOG1056|consensus 99.9 1.6E-28 3.5E-33 253.1 7.0 256 22-329 418-747 (878)
3 KOG1055|consensus 99.6 5.6E-17 1.2E-21 164.1 4.0 162 158-319 54-244 (865)
4 PF00003 7tm_3: 7 transmembran 99.6 5.5E-16 1.2E-20 141.3 0.1 161 117-329 1-177 (238)
5 cd06372 PBP1_GC_G_like Ligand- 98.9 1E-08 2.3E-13 99.9 10.3 114 164-277 16-145 (391)
6 cd06379 PBP1_iGluR_NMDA_NR1 N- 98.9 2.5E-09 5.5E-14 103.8 5.9 66 19-86 310-377 (377)
7 cd06365 PBP1_Pheromone_recepto 98.8 4.8E-09 1E-13 105.2 7.2 63 22-84 397-469 (469)
8 cd06385 PBP1_NPR_A Ligand-bind 98.8 1.3E-08 2.8E-13 99.8 9.7 125 151-275 2-149 (405)
9 cd06364 PBP1_CaSR Ligand-bindi 98.8 1.4E-08 3E-13 103.0 7.5 63 22-84 437-510 (510)
10 cd06386 PBP1_NPR_C_like Ligand 98.8 3.4E-08 7.4E-13 96.5 10.0 113 165-279 17-147 (387)
11 cd06373 PBP1_NPR_like Ligand b 98.7 5E-08 1.1E-12 95.3 9.9 129 151-280 2-153 (396)
12 cd06365 PBP1_Pheromone_recepto 98.7 5.5E-08 1.2E-12 97.6 9.5 116 164-279 38-182 (469)
13 cd06374 PBP1_mGluR_groupI Liga 98.7 4.5E-08 9.8E-13 98.2 8.7 116 164-280 40-197 (472)
14 cd06362 PBP1_mGluR Ligand bind 98.7 5.4E-08 1.2E-12 96.8 8.5 113 166-279 31-182 (452)
15 cd06375 PBP1_mGluR_groupII Lig 98.6 8E-08 1.7E-12 96.2 8.0 116 164-279 29-184 (458)
16 cd06367 PBP1_iGluR_NMDA N-term 98.6 4.8E-08 1E-12 94.2 6.3 62 20-85 298-362 (362)
17 cd06376 PBP1_mGluR_groupIII Li 98.6 5.7E-08 1.2E-12 97.2 6.5 60 22-84 397-463 (463)
18 cd06371 PBP1_sensory_GC_DEF_li 98.6 1.7E-07 3.8E-12 91.4 8.8 127 151-280 2-143 (382)
19 PF01094 ANF_receptor: Recepto 98.6 1.6E-07 3.5E-12 88.7 7.9 114 167-281 2-133 (348)
20 cd06376 PBP1_mGluR_groupIII Li 98.5 2E-07 4.3E-12 93.3 8.3 112 166-278 31-181 (463)
21 cd06370 PBP1_Speract_GC_like L 98.5 4.2E-07 9E-12 89.3 9.8 127 150-280 2-147 (404)
22 cd06366 PBP1_GABAb_receptor Li 98.5 3.9E-07 8.4E-12 87.2 8.9 128 151-280 2-146 (350)
23 cd06350 PBP1_GPCR_family_C_lik 98.5 3.9E-07 8.6E-12 86.8 8.5 114 165-279 27-170 (348)
24 cd06361 PBP1_GPC6A_like Ligand 98.5 4.5E-07 9.7E-12 89.3 9.0 112 166-279 36-182 (403)
25 cd06385 PBP1_NPR_A Ligand-bind 98.5 3.3E-07 7.2E-12 89.8 8.1 63 22-84 338-405 (405)
26 cd06374 PBP1_mGluR_groupI Liga 98.5 2E-07 4.4E-12 93.4 6.1 59 19-79 406-470 (472)
27 cd06363 PBP1_Taste_receptor Li 98.4 4.5E-07 9.7E-12 89.2 7.5 70 16-85 336-410 (410)
28 cd06372 PBP1_GC_G_like Ligand- 98.4 3.6E-07 7.8E-12 89.1 6.2 53 22-74 329-388 (391)
29 cd06352 PBP1_NPR_GC_like Ligan 98.4 1.2E-06 2.7E-11 85.0 9.3 130 151-280 2-148 (389)
30 cd06384 PBP1_NPR_B Ligand-bind 98.4 1.6E-06 3.5E-11 84.9 9.3 113 165-277 18-152 (399)
31 cd06362 PBP1_mGluR Ligand bind 98.4 5.2E-07 1.1E-11 89.7 5.9 51 22-72 392-447 (452)
32 cd06361 PBP1_GPC6A_like Ligand 98.4 8.8E-07 1.9E-11 87.3 7.3 56 22-77 340-399 (403)
33 cd06364 PBP1_CaSR Ligand-bindi 98.2 4.7E-06 1E-10 84.7 8.9 112 168-279 52-197 (510)
34 cd06375 PBP1_mGluR_groupII Lig 98.2 2.1E-06 4.5E-11 86.0 6.1 49 22-70 392-453 (458)
35 cd06384 PBP1_NPR_B Ligand-bind 98.2 3.1E-06 6.6E-11 82.9 6.6 56 22-77 339-397 (399)
36 cd06380 PBP1_iGluR_AMPA N-term 98.2 2.4E-06 5.2E-11 82.9 5.3 58 15-72 320-378 (382)
37 cd06390 PBP1_iGluR_AMPA_GluR1 98.1 4.5E-06 9.7E-11 81.2 5.8 53 20-72 307-360 (364)
38 cd06389 PBP1_iGluR_AMPA_GluR2 98.1 5.1E-06 1.1E-10 80.9 5.5 52 21-72 313-365 (370)
39 cd06382 PBP1_iGluR_Kainate N-t 98.0 1.6E-05 3.4E-10 75.4 8.0 114 164-279 11-139 (327)
40 cd06369 PBP1_GC_C_enterotoxin_ 98.0 1.6E-05 3.5E-10 76.8 7.5 53 23-75 314-368 (380)
41 cd06386 PBP1_NPR_C_like Ligand 98.0 1.4E-05 3E-10 78.2 7.1 56 22-77 326-384 (387)
42 cd06373 PBP1_NPR_like Ligand b 97.9 1E-05 2.2E-10 79.0 5.1 55 22-76 336-393 (396)
43 cd06363 PBP1_Taste_receptor Li 97.9 3.4E-05 7.4E-10 75.9 8.8 114 165-279 42-186 (410)
44 cd06388 PBP1_iGluR_AMPA_GluR4 97.9 1.3E-05 2.7E-10 78.3 5.1 53 21-73 314-367 (371)
45 cd06391 PBP1_iGluR_delta_2 N-t 97.9 5.1E-05 1.1E-09 74.8 9.2 121 151-279 2-148 (400)
46 cd06391 PBP1_iGluR_delta_2 N-t 97.8 2.5E-05 5.4E-10 77.0 6.0 52 21-72 338-395 (400)
47 cd06346 PBP1_ABC_ligand_bindin 97.8 7.4E-05 1.6E-09 70.5 9.0 127 151-279 2-147 (312)
48 cd06387 PBP1_iGluR_AMPA_GluR3 97.8 3.2E-05 6.9E-10 75.6 5.2 53 20-72 315-368 (372)
49 cd06380 PBP1_iGluR_AMPA N-term 97.8 8.8E-05 1.9E-09 72.0 8.3 123 151-280 2-137 (382)
50 cd06269 PBP1_glutamate_recepto 97.7 0.0001 2.2E-09 67.3 8.0 113 165-280 19-151 (298)
51 cd06392 PBP1_iGluR_delta_1 N-t 97.7 3.6E-05 7.8E-10 75.9 5.1 52 21-72 338-395 (400)
52 cd06370 PBP1_Speract_GC_like L 97.7 2.7E-05 5.8E-10 76.5 3.9 40 22-61 344-384 (404)
53 cd06393 PBP1_iGluR_Kainate_Glu 97.7 0.00017 3.7E-09 70.3 8.7 130 149-279 3-149 (384)
54 cd06368 PBP1_iGluR_non_NMDA_li 97.6 0.00022 4.9E-09 67.2 8.0 123 151-279 2-137 (324)
55 cd06394 PBP1_iGluR_Kainate_KA1 97.6 0.00029 6.3E-09 67.8 8.7 128 151-280 2-145 (333)
56 cd06378 PBP1_iGluR_NMDA_NR2 N- 97.5 0.00017 3.6E-09 70.2 6.4 61 21-86 300-362 (362)
57 cd06338 PBP1_ABC_ligand_bindin 97.5 0.00037 8.1E-09 66.3 8.6 129 151-279 2-151 (345)
58 cd06393 PBP1_iGluR_Kainate_Glu 97.4 0.00018 3.9E-09 70.1 5.5 51 23-73 327-379 (384)
59 cd06352 PBP1_NPR_GC_like Ligan 97.3 0.00048 1E-08 66.8 7.2 52 22-73 330-383 (389)
60 cd06342 PBP1_ABC_LIVBP_like Ty 97.3 0.00099 2.2E-08 62.8 9.1 126 151-279 2-145 (334)
61 cd06392 PBP1_iGluR_delta_1 N-t 97.3 0.0009 1.9E-08 66.1 8.8 112 167-279 13-148 (400)
62 cd06367 PBP1_iGluR_NMDA N-term 97.3 0.0012 2.5E-08 63.6 9.3 122 151-280 5-147 (362)
63 cd04509 PBP1_ABC_transporter_G 97.3 0.0012 2.7E-08 60.1 8.9 128 151-279 2-146 (299)
64 cd06345 PBP1_ABC_ligand_bindin 97.3 0.00096 2.1E-08 63.6 8.5 127 151-279 2-154 (344)
65 KOG4440|consensus 97.1 0.0002 4.4E-09 72.2 1.9 68 22-91 324-397 (993)
66 cd06383 PBP1_iGluR_AMPA_Like N 97.1 0.0032 6.9E-08 61.4 9.6 111 166-281 13-145 (368)
67 cd06377 PBP1_iGluR_NMDA_NR3 N- 97.0 0.0014 3E-08 64.2 6.1 62 21-85 313-382 (382)
68 cd06381 PBP1_iGluR_delta_like 96.9 0.0011 2.4E-08 64.5 5.2 50 23-72 304-359 (363)
69 cd06371 PBP1_sensory_GC_DEF_li 96.9 0.0016 3.5E-08 63.6 6.2 40 22-61 322-361 (382)
70 cd06348 PBP1_ABC_ligand_bindin 96.9 0.0042 9.1E-08 59.1 8.9 127 151-278 2-145 (344)
71 cd06347 PBP1_ABC_ligand_bindin 96.9 0.0048 1E-07 58.0 9.2 128 151-279 2-145 (334)
72 cd06340 PBP1_ABC_ligand_bindin 96.8 0.0047 1E-07 59.1 8.4 127 151-278 2-153 (347)
73 cd06327 PBP1_SBP_like_1 Peripl 96.7 0.0077 1.7E-07 57.2 9.2 125 151-278 2-144 (334)
74 cd06366 PBP1_GABAb_receptor Li 96.7 0.0027 5.9E-08 60.6 6.1 42 31-72 301-343 (350)
75 cd06344 PBP1_ABC_ligand_bindin 96.7 0.0058 1.3E-07 58.0 8.2 127 151-279 2-144 (332)
76 cd06330 PBP1_Arsenic_SBP_like 96.7 0.0062 1.3E-07 57.9 8.3 126 151-278 2-147 (346)
77 KOG1056|consensus 96.7 0.0056 1.2E-07 65.1 8.0 141 139-280 22-205 (878)
78 cd06349 PBP1_ABC_ligand_bindin 96.6 0.01 2.2E-07 56.4 9.2 127 151-279 2-145 (340)
79 cd06336 PBP1_ABC_ligand_bindin 96.5 0.016 3.5E-07 55.4 9.8 127 151-279 2-148 (347)
80 cd06351 PBP1_iGluR_N_LIVBP_lik 96.4 0.019 4.2E-07 53.6 9.3 113 168-280 14-143 (328)
81 cd06329 PBP1_SBP_like_3 Peripl 96.4 0.018 3.9E-07 54.9 9.0 125 151-278 2-152 (342)
82 cd06382 PBP1_iGluR_Kainate N-t 96.1 0.0062 1.3E-07 57.6 4.3 37 36-72 286-323 (327)
83 cd06369 PBP1_GC_C_enterotoxin_ 95.9 0.026 5.7E-07 54.9 7.5 112 166-279 19-162 (380)
84 cd06333 PBP1_ABC-type_HAAT_lik 95.7 0.05 1.1E-06 50.9 8.5 125 151-278 2-142 (312)
85 cd06359 PBP1_Nba_like Type I p 95.5 0.056 1.2E-06 51.2 8.1 124 151-278 2-143 (333)
86 cd06326 PBP1_STKc_like Type I 95.1 0.12 2.5E-06 48.7 8.8 127 150-278 2-145 (336)
87 cd06331 PBP1_AmiC_like Type I 95.0 0.13 2.8E-06 48.7 8.9 127 151-278 2-141 (333)
88 cd06355 PBP1_FmdD_like Peripla 94.9 0.13 2.7E-06 49.4 8.7 127 151-278 2-142 (348)
89 cd06328 PBP1_SBP_like_2 Peripl 94.9 0.12 2.7E-06 49.0 8.5 81 151-231 2-83 (333)
90 PF01094 ANF_receptor: Recepto 94.9 0.038 8.2E-07 51.9 4.8 32 19-50 306-338 (348)
91 cd06394 PBP1_iGluR_Kainate_KA1 94.7 0.041 8.9E-07 53.0 4.7 37 36-72 291-328 (333)
92 cd06335 PBP1_ABC_ligand_bindin 94.7 0.21 4.6E-06 47.6 9.5 127 151-279 2-148 (347)
93 cd06343 PBP1_ABC_ligand_bindin 94.7 0.16 3.4E-06 48.6 8.6 129 149-279 7-154 (362)
94 cd06358 PBP1_NHase Type I peri 94.5 0.058 1.3E-06 51.2 5.3 125 151-278 2-141 (333)
95 cd06334 PBP1_ABC_ligand_bindin 94.5 0.21 4.6E-06 48.1 9.2 126 151-279 2-150 (351)
96 cd06379 PBP1_iGluR_NMDA_NR1 N- 94.5 0.23 5E-06 48.0 9.5 119 149-280 20-165 (377)
97 cd06268 PBP1_ABC_transporter_L 94.5 0.29 6.3E-06 44.3 9.6 126 151-279 2-145 (298)
98 PRK15404 leucine ABC transport 94.2 0.22 4.8E-06 48.3 8.6 128 149-279 26-171 (369)
99 KOG1054|consensus 94.1 0.07 1.5E-06 54.2 4.9 51 21-71 343-394 (897)
100 COG0683 LivK ABC-type branched 93.9 0.12 2.5E-06 50.2 6.0 129 148-278 10-157 (366)
101 TIGR03669 urea_ABC_arch urea A 93.2 0.11 2.5E-06 50.6 4.7 83 150-233 2-85 (374)
102 cd06360 PBP1_alkylbenzenes_lik 93.1 0.48 1E-05 44.5 8.6 125 151-278 2-143 (336)
103 cd06332 PBP1_aromatic_compound 92.8 0.53 1.1E-05 44.1 8.5 124 151-278 2-143 (333)
104 cd06350 PBP1_GPCR_family_C_lik 92.6 0.15 3.3E-06 48.2 4.5 33 40-72 304-340 (348)
105 cd06339 PBP1_YraM_LppC_lipopro 92.6 0.32 6.9E-06 46.4 6.6 119 151-278 2-133 (336)
106 TIGR03407 urea_ABC_UrtA urea A 92.5 0.17 3.7E-06 48.7 4.7 79 150-229 2-81 (359)
107 cd06356 PBP1_Amide_Urea_BP_lik 92.3 0.21 4.6E-06 47.4 5.1 91 151-242 2-93 (334)
108 PRK15404 leucine ABC transport 92.0 0.2 4.2E-06 48.7 4.5 40 22-61 322-362 (369)
109 cd06383 PBP1_iGluR_AMPA_Like N 91.9 0.088 1.9E-06 51.3 1.9 36 24-60 325-360 (368)
110 cd06357 PBP1_AmiC Periplasmic 88.2 0.88 1.9E-05 43.8 5.4 72 151-223 2-74 (360)
111 cd06381 PBP1_iGluR_delta_like 87.9 3.2 6.9E-05 40.3 9.1 109 169-280 17-149 (363)
112 cd06368 PBP1_iGluR_non_NMDA_li 87.9 0.83 1.8E-05 42.8 4.9 34 38-71 285-319 (324)
113 TIGR03863 PQQ_ABC_bind ABC tra 84.2 6 0.00013 38.2 8.9 110 165-277 11-136 (347)
114 cd06337 PBP1_ABC_ligand_bindin 83.2 2.7 5.8E-05 40.3 6.0 80 151-230 2-83 (357)
115 TIGR03407 urea_ABC_UrtA urea A 83.1 1.9 4.1E-05 41.5 4.9 44 22-65 300-345 (359)
116 cd06355 PBP1_FmdD_like Peripla 83.1 1.8 4E-05 41.3 4.8 45 22-66 299-345 (348)
117 PF13458 Peripla_BP_6: Peripla 83.0 1.9 4E-05 40.5 4.7 128 150-278 3-144 (343)
118 cd06351 PBP1_iGluR_N_LIVBP_lik 81.7 2 4.4E-05 39.8 4.5 34 38-71 287-322 (328)
119 PF13458 Peripla_BP_6: Peripla 81.1 3.3 7.1E-05 38.8 5.7 42 21-62 300-343 (343)
120 PF13433 Peripla_BP_5: Peripla 77.7 1.8 4E-05 42.1 2.8 77 150-229 2-79 (363)
121 cd06341 PBP1_ABC_ligand_bindin 75.4 7.3 0.00016 36.7 6.3 76 151-227 2-78 (341)
122 cd06357 PBP1_AmiC Periplasmic 73.5 5.8 0.00012 38.1 5.1 46 22-67 300-347 (360)
123 cd06388 PBP1_iGluR_AMPA_GluR4 72.9 23 0.00049 34.5 9.1 113 168-280 14-135 (371)
124 cd06377 PBP1_iGluR_NMDA_NR3 N- 71.4 33 0.00072 33.8 9.8 127 149-281 19-163 (382)
125 cd06387 PBP1_iGluR_AMPA_GluR3 70.6 18 0.00039 35.3 7.8 112 168-279 14-134 (372)
126 COG0683 LivK ABC-type branched 67.0 7.9 0.00017 37.4 4.5 39 22-60 314-354 (366)
127 cd06390 PBP1_iGluR_AMPA_GluR1 61.8 30 0.00066 33.5 7.5 105 168-279 14-127 (364)
128 cd06389 PBP1_iGluR_AMPA_GluR2 58.2 53 0.0012 31.7 8.5 105 168-278 14-127 (370)
129 TIGR03669 urea_ABC_arch urea A 52.3 31 0.00068 33.5 5.8 48 22-69 298-348 (374)
130 cd01391 Periplasmic_Binding_Pr 48.5 90 0.002 26.8 7.7 91 187-279 30-134 (269)
131 cd06378 PBP1_iGluR_NMDA_NR2 N- 46.6 47 0.001 32.2 6.0 34 246-279 108-145 (362)
132 cd06337 PBP1_ABC_ligand_bindin 35.5 26 0.00056 33.5 2.2 37 23-61 319-355 (357)
133 KOG1053|consensus 35.2 62 0.0013 35.4 5.0 60 22-86 338-399 (1258)
134 PF15048 OSTbeta: Organic solu 32.5 31 0.00067 28.4 1.9 35 104-138 32-67 (125)
135 CHL00005 rps16 ribosomal prote 31.5 35 0.00076 26.0 1.9 42 52-93 16-66 (82)
136 cd06349 PBP1_ABC_ligand_bindin 26.5 90 0.0019 29.2 4.2 33 30-62 306-339 (340)
137 PF06024 DUF912: Nucleopolyhed 25.4 85 0.0018 24.7 3.2 32 105-136 60-91 (101)
138 PF01102 Glycophorin_A: Glycop 21.6 52 0.0011 27.0 1.3 14 118-131 76-89 (122)
139 PF07356 DUF1481: Protein of u 20.1 38 0.00083 30.1 0.3 42 6-50 33-79 (195)
No 1
>KOG1055|consensus
Probab=100.00 E-value=4.2e-43 Score=351.32 Aligned_cols=284 Identities=41% Similarity=0.733 Sum_probs=259.6
Q ss_pred CccccccCCCCCceecCChHHHHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEECCCCceeecC
Q psy8319 1 MGRLKKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFD 80 (330)
Q Consensus 1 ~~~l~~~~~~l~~f~y~~~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~~~~~~l~~~~ 80 (330)
|++|....++|+||+|+|++++++++++|+++||.|+||.|.|++ |||.+...|.|||+|+++++|.||+..+.+.|.+
T Consensus 360 ~e~l~~~~~~l~~f~y~~k~i~d~i~eamn~tsF~GvsG~V~F~~-geR~a~t~ieQ~qdg~y~k~g~Yds~~D~ls~~n 438 (865)
T KOG1055|consen 360 MEGLGRSHVRLEDFNYNNKTIADQIYEAMNSTSFEGVSGHVVFSN-GERMALTLIEQFQDGKYKKIGYYDSTKDDLSWIN 438 (865)
T ss_pred HhcCCccceeccccchhhhHHHHHHHHHhhcccccccccceEecc-hhhHHHHHHHHHhCCceEeecccccccchhhccc
Confidence 456777889999999999999999999999999999999999998 9999999999999999999999999888999988
Q ss_pred ccccCCCCCCCCccceeEEeeeechhHHHHHHHHHHHHHHHHHHhhheeeeecceeeEecCCccchhhhhhhhhhhcccc
Q psy8319 81 RERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLN 160 (330)
Q Consensus 81 ~i~W~~~~~P~s~~~~~~~~~~~~~~~~i~~~~~a~~gi~~~~~~~~~~i~~r~~~~Ik~Ss~~l~~~iliG~ll~~~~~ 160 (330)
+.+|.+|.||.|.+.+++....++...++...+++.+|+.++..++.+++++|+.+.||+|+|++++++..|+.+++.++
T Consensus 439 ~~~w~~g~ppkd~Tv~~~~~~~~S~~~~~~~~~~s~Lg~~~~~~~l~f~~~~~~q~~i~~s~P~~nni~~~G~~~~~~sv 518 (865)
T KOG1055|consen 439 TEKWIGGSPPKDSTLIIKTFRFVSQKLYISVSSLSSLGIILAVVFLSFNIKNRNQRYIKMSSPNLNNLIIVGCSLTLASV 518 (865)
T ss_pred cceEeccCCCcccceeehcccccCcchhhhhhHHHHHHHHHHHHhchhhhhhhhhhhhccCCCCCCcceeeccceeeeee
Confidence 88999889999999998999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc------------ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 161 FNL------------PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 161 ~~~------------~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
+.. +..|..+. |.+.+|| ++.+++++.|+|++-.++.
T Consensus 519 ~~lgLd~~~Isv~~f~~lc~~r~----------w~l~~gf-----------------t~~~Gamf~K~w~Vh~if~---- 567 (865)
T KOG1055|consen 519 FLLGLDGYSISVNAFPFLCTART----------WILGLGF-----------------TLAFGAMFAKTWRVHSIFT---- 567 (865)
T ss_pred eeccCCcceecHHHHHHHHHHHH----------HHHhhee-----------------ecccchhhhhhheeeEeec----
Confidence 873 58899988 9999999 9999999999999665541
Q ss_pred eeehhhhhhcccceeecccCceEEeeehhHHHHHHHHHhcceEeecceecccccccCCCCCCCCCCeEEeeccccccccC
Q psy8319 229 CTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRN 308 (330)
Q Consensus 229 ~~~va~~~~~w~~~~~~~~~~~l~~~v~~~~~v~li~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 308 (330)
. -+.| ++..+|..++.+|+++..+|+++++.|..+||+++++++|..+.+. +++|+.+.|++++|.|++
T Consensus 568 ---~---~~~~---kK~~e~~Kl~~ivg~Ll~iD~~il~~WqivdPl~rt~ekl~~ep~~--~~~Dv~I~PelE~Ces~~ 636 (865)
T KOG1055|consen 568 ---N---QKMW---KKVIEDSKLYVIVGLLLAIDVLILAIWQIVDPLHRTEEKLSKEPPK--NDRDVSIIPELEHCESEH 636 (865)
T ss_pred ---c---cccc---ccccccceeEeehhHHHHhHHHHhhhhhccChhhhhhhhcCCCCCC--cccccccchhhhhhcccc
Confidence 1 1222 2457788899999999999999999999999999999999988765 477888999999999999
Q ss_pred cchHHHHHHHH---Hhhhcccc
Q psy8319 309 NNIWYGFFNRH---LQVLGVKI 327 (330)
Q Consensus 309 ~~i~~~~~y~~---l~~~~~~~ 327 (330)
+.+|++++|+| |++||+++
T Consensus 637 ~~iwlgivya~KglllvfG~FL 658 (865)
T KOG1055|consen 637 MTIWLGIVYAYKGLLLLFGCFL 658 (865)
T ss_pred cchhhhhhhhhhhHHHHHhHHh
Confidence 99999999998 78899875
No 2
>KOG1056|consensus
Probab=99.95 E-value=1.6e-28 Score=253.07 Aligned_cols=256 Identities=20% Similarity=0.352 Sum_probs=209.3
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee-CC---cEEEEEEEECCCCceeec-CccccCCC--CCCCCcc
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI-NG---SYTKLGFYDTQADNLTWF-DRERWIGG--KVPQDRT 94 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q-~~---~~v~VG~y~~~~~~l~~~-~~i~W~~~--~~P~s~~ 94 (330)
+++|++++.+|+|.|..|.|+||+|||.+++|+|.+|| .+ .+..||+|+... .++ +++.|.++ .+|.|..
T Consensus 418 g~~L~~~l~~vnF~~~~~~v~Fd~~gD~~~~y~I~~~~~~~~~~~y~~vg~w~~~~---~l~i~~~~w~~~~~~v~~S~C 494 (878)
T KOG1056|consen 418 GSLLLKYLLNVNFTGPAGSVRFDENGDGPGRYDILNYQLTNGSYTYKEVGYWSEGL---SLNIEDLDWTTKPSGVPKSVC 494 (878)
T ss_pred HHHHHhhhheeEEecCCCceeecCCCCCccceeEEEeeccCCCccceeeeeecccc---cccceeeeeccCCCCCccccc
Confidence 67899999999999999999999999999999999999 23 689999998533 244 56778764 4677610
Q ss_pred ------------------------------------------------------ceeEEeeeechhHHHHHHHHHHHHHH
Q psy8319 95 ------------------------------------------------------QIRKVLRTISVPLVICMWTVATVGIL 120 (330)
Q Consensus 95 ------------------------------------------------------~~~~~~~~~~~~~~i~~~~~a~~gi~ 120 (330)
..+.+++.|.+++.++.+++|++|++
T Consensus 495 S~pC~~g~~k~~~~~~~ccw~c~~c~~~eY~~d~~tc~~C~~~~wp~~~~tgc~~~~~~yl~W~~~~~i~~l~lA~LGii 574 (878)
T KOG1056|consen 495 SEPCLPGQRKKVTKGVTCCWHCTPCMSYEYVNDEFTCSDCQLGQWPNASLTGCFDIPVSYLRWRSPWSIAPLLLAILGII 574 (878)
T ss_pred cCcCCcchhcccccCceeEEEcccCCCcceecCcceeccCCcCcCCCcccCCccccchhheeccccccHHHHHHHHHHHH
Confidence 03456889999999999999999999
Q ss_pred HHHHhhheeeeecceeeEecCCccchhhhhhhhhhhccccccc-----ccchHHHHHHHHHhhhcCCCCCCCceEEEEee
Q psy8319 121 FAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL-----PFACEPAAKLALEDVNNATDLLPGFKLQLHWN 195 (330)
Q Consensus 121 ~~~~~~~~~i~~r~~~~Ik~Ss~~l~~~iliG~ll~~~~~~~~-----~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ 195 (330)
.+++++++|++|++||+||+|++++++++|+|++++|.+.+++ ...|.++. ..+..||
T Consensus 575 ~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l~y~~tf~~i~eP~~~~C~lrr----------~~~gl~f------- 637 (878)
T KOG1056|consen 575 ATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFLCYASTFFFIAEPTDISCRLRR----------TFLGLGF------- 637 (878)
T ss_pred HHHHhheeEEEecCCceEEecCcEehHHHHHHHHHHHhhhheeEecCCCceeeEee----------eecchhH-------
Confidence 9999999999999999999999999999999999999998875 48999998 8999999
Q ss_pred cCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeecccCceEEeeehhHHHHHHHHHhcceEeecc
Q psy8319 196 DSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPL 275 (330)
Q Consensus 196 ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~~~~~~l~~~v~~~~~v~li~~~~W~~v~~~ 275 (330)
++++++++.|++||++++.-+ ...+ .. .+.+.++.+..+...+..+|++++..|..++||
T Consensus 638 ----------~i~ysalltKtnrI~rif~~~---~k~~-~~------~~~is~~~q~~i~~~l~~iQlvi~~~Wlv~~~p 697 (878)
T KOG1056|consen 638 ----------TICYSALLTKTNRIARIFEFS---KKSI-QR------PRFISPWSQVLITFILIGIQLVICVSWLVVEPP 697 (878)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcc---cccc-cc------cceeccchHHHHHHHHhhheeEEEEEEEeecCC
Confidence 999999999999998886211 1111 11 245777777777778999999999999999998
Q ss_pred eecccccccCCCCCCCCCCeEEeeccccccccCcchHHHHHHHHH--------hhhcccccC
Q psy8319 276 QRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRHL--------QVLGVKIPE 329 (330)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~i~~~~~y~~l--------~~~~~~~~~ 329 (330)
... .+.. .+.++ ..+.|+-.+..++..++|.++ ++++|++||
T Consensus 698 ~~~---~~~~-----~~~~~----~~L~C~~~~~~f~~~l~Y~~lL~~~Ct~yA~ktR~~pe 747 (878)
T KOG1056|consen 698 GSV---RTYV-----SRREV----VILKCTEVDLGFLLSLGYSGLLILSCTVYAFKTRNLPE 747 (878)
T ss_pred ccc---cccc-----cccce----EEEEecCcchHHHHHHHHHHHHHHHHHHHHhhccCChh
Confidence 663 1111 12222 246899889999999999863 888999998
No 3
>KOG1055|consensus
Probab=99.65 E-value=5.6e-17 Score=164.07 Aligned_cols=162 Identities=41% Similarity=0.671 Sum_probs=129.5
Q ss_pred ccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhh
Q psy8319 158 SLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAK 237 (330)
Q Consensus 158 ~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~ 237 (330)
.+.|..+..|+|+++||+++||++..+++||+|++.++||+|+++.+...+|+.++..++.+++..|||+++..+++.++
T Consensus 54 ~~~~~~g~~~~Pav~~Al~~vn~~~~ilp~y~L~~~~~ds~C~~~~g~k~~fdll~~~p~k~mll~GCs~v~~~iaea~~ 133 (865)
T KOG1055|consen 54 SGGWPGGQACLPAVELALEDVNSRSDILPGYRLKLIHHDSECDPGQGTKALYDLLYNGPNKLMLLGGCSSVTTLIAEAAK 133 (865)
T ss_pred cCCCcCcccccHHHHHHHHHhhccccccCCcEEEEEeccccCCccccHHHHHHHHHcCCchheeccCCCCcchHHHhhcc
Confidence 44555679999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred ccccee------------ecccCceEEeeeh----hHHHHHHHHHhcceEeecceeccccccc-----CCCCCCCCCCeE
Q psy8319 238 MWNLVV------------KKVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRITENFPL-----ETPPKSSADDIK 296 (330)
Q Consensus 238 ~w~~~~------------~~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~~~~~~-----~~~~~~~~~~~~ 296 (330)
+||+.+ +..+|+++++..+ +...+.++..++|.+++.+++.+++|.. +...+..+.++.
T Consensus 134 ~w~l~~lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e~~f~~~~~dl~~~~~~~~ieiv 213 (865)
T KOG1055|consen 134 MWNLIVLSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTEEVFSSTLNDLEARLKEAGIEIV 213 (865)
T ss_pred ccceeeecccCCCccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeehhhhcchHHHHHHhhhccccEEE
Confidence 999887 3457774444433 4577999999999999999999888863 122111222222
Q ss_pred Eee------c--cccccccCcchHHHHHHHH
Q psy8319 297 ISP------E--LEHCESRNNNIWYGFFNRH 319 (330)
Q Consensus 297 ~~~------~--~~~C~~~~~~i~~~~~y~~ 319 (330)
... . +...++++.+++++++|..
T Consensus 214 ~~qsf~~dp~~~vk~l~~~D~RiI~g~f~~~ 244 (865)
T KOG1055|consen 214 FRQSFSSDPADSVKNLKRQDARIIVGLFYET 244 (865)
T ss_pred EeeccccCHHHHHhhccccchhheeccchHh
Confidence 111 1 1234568999999999974
No 4
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.55 E-value=5.5e-16 Score=141.27 Aligned_cols=161 Identities=21% Similarity=0.363 Sum_probs=120.3
Q ss_pred HHHHHHHHhhheeeeecceeeEecCCccchhhhhhhhhhhccccccc-----ccchHHHHHHHHHhhhcCCCCCCCceEE
Q psy8319 117 VGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL-----PFACEPAAKLALEDVNNATDLLPGFKLQ 191 (330)
Q Consensus 117 ~gi~~~~~~~~~~i~~r~~~~Ik~Ss~~l~~~iliG~ll~~~~~~~~-----~~~c~~~~~~A~~~iN~~~~ll~gf~l~ 191 (330)
+|+++++++++++++|||+|+||+|||.++.++++|++++|.+.+.+ +..|..+. |.+..||
T Consensus 1 ~gil~~~~~~i~~~~~r~~~~i~~s~~~l~~~lL~G~~l~~~~~~~~~~~~s~~~C~~r~----------~~~~l~f--- 67 (238)
T PF00003_consen 1 LGILFTIFILIIFIRNRNTPIIRASSPELLYILLLGCLLLYSSVFLFLLPPSDILCTLRR----------WLFSLGF--- 67 (238)
T ss_pred ChhhHHHHHHHHHHhhcCCCceecCCHhHHHHHHHHHHHHHHHHHHhccCcCCcEEEEee----------eeeeeeh---
Confidence 47888888889999999999999999999999999999999888764 47899999 9999999
Q ss_pred EEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeeccc-CceEEeeehhHHHHHHHHHhcce
Q psy8319 192 LHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVE-PWKLYTMVTGLLSIDLVILLCWQ 270 (330)
Q Consensus 192 l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~~~-~~~l~~~v~~~~~v~li~~~~W~ 270 (330)
++++++++.|+||++.++. .++..+ .+... ++.+...+...+++|++....|.
T Consensus 68 --------------~l~~~~ll~K~~ri~~if~-------~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~ii~~~w~ 121 (238)
T PF00003_consen 68 --------------TLIFSALLAKTWRIYRIFR-------NPSRKR-----RRLISSNRSLLLLVLLLVLVQVIILIIWL 121 (238)
T ss_pred --------------HhhhhHHHHhhhheeeeec-------cCCCCC-----cccccCCcchhhheeeeeeehhhhhhhhh
Confidence 9999999999999998862 111111 01112 55667777778888999999999
Q ss_pred EeecceecccccccCCCCCCCCCCeEEeeccccccccCcchHHHHHHHH----------HhhhcccccC
Q psy8319 271 FYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRH----------LQVLGVKIPE 329 (330)
Q Consensus 271 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~i~~~~~y~~----------l~~~~~~~~~ 329 (330)
.++|++++. +.. .+ .......|+ ++...|.++.+.| ++...|++|+
T Consensus 122 ~~~p~~~~~-~~~-------~~----~~~~~~~C~-~~~~~~~~~~~~y~~~Ll~~~~~la~~~R~~~~ 177 (238)
T PF00003_consen 122 ILDPPTPVS-DID-------IS----SNEIYLSCS-SNSNIWLILSLGYNGLLLLIGFFLAFKTRNVPS 177 (238)
T ss_pred hcccccccc-ccc-------cc----ceEEEEEec-CCccchHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 999995421 110 11 112346896 5677777655443 3566677774
No 5
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=98.87 E-value=1e-08 Score=99.89 Aligned_cols=114 Identities=11% Similarity=0.209 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhccccee
Q psy8319 164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVV 243 (330)
Q Consensus 164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~ 243 (330)
...+..++++|+|+||++..++.|++|++.+.|++|++..+...+...+..+....+++|.||..+..+++.+..|++|+
T Consensus 16 ~~~~~~a~~lAi~~IN~~~~~l~~~~l~~~~~D~~~~~~~a~~~~~~l~~~~~v~aiiGp~~S~~~~av~~va~~~~iP~ 95 (391)
T cd06372 16 AQRLGAALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSAKESLAGFIDQVQKEHISALFGPACPEAAEVTGLLASQWNIPM 95 (391)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCCCceEEEEEecCCCCccHHHHHHHHHHHhcCceEEECCCCCcHHHHHHHHHhccCccE
Confidence 35566899999999999999999999999999999999999999888776545555666999999888899999999988
Q ss_pred ec------------ccCceEEeeeh----hHHHHHHHHHhcceEeeccee
Q psy8319 244 KK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQR 277 (330)
Q Consensus 244 ~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~ 277 (330)
.. .+|++.++..+ +.++++++.+++|++++.++.
T Consensus 96 is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~ 145 (391)
T cd06372 96 FGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGG 145 (391)
T ss_pred EEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEe
Confidence 32 23444444433 567889999999999999864
No 6
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=98.87 E-value=2.5e-09 Score=103.77 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECCCCceeec-CccccCC
Q psy8319 19 KEIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQADNLTWF-DRERWIG 86 (330)
Q Consensus 19 ~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~~~~l~~~-~~i~W~~ 86 (330)
...+++++++|++++|+|+||+|+||+||||. ..|+|.|+|++.+++||.|+. +.+.++ ++|.|++
T Consensus 310 ~~~g~~l~~~l~~v~f~G~tg~i~Fd~~Gd~~~~~~~I~~~~~~~~~~VG~w~~--~~l~~~~~~i~W~~ 377 (377)
T cd06379 310 WETGPLFKRALMSSKYPGETGRVEFNDDGDRKFANYDIMNIQNRKLVQVGLYNG--DILRLNDRSIIWPG 377 (377)
T ss_pred CcchHHHHHHHHhCCcCCccCceEECCCCCccCccEEEEEecCCCceEeeEEcC--cEEEecCceeeCCC
Confidence 45788999999999999999999999999997 689999999888999999985 367776 6899974
No 7
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=98.84 E-value=4.8e-09 Score=105.23 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=53.9
Q ss_pred HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEee--CC---cEEEEEEEEC---CCCceeec-Ccccc
Q psy8319 22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVI--NG---SYTKLGFYDT---QADNLTWF-DRERW 84 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q--~~---~~v~VG~y~~---~~~~l~~~-~~i~W 84 (330)
.++|+++|+|++|.|.+| +|+||+|||+.+.|+|.||| ++ ++++||.|+. ..+.+.++ ++|.|
T Consensus 397 ~~~l~~~l~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~q~~~~~~~~~~~VG~~~~~~~~~~~l~i~~~~i~W 469 (469)
T cd06365 397 PWQLHSFLKNIQFKNPAGDEVNLNQKRKLDTEYDILNYWNFPQGLGLKVKVGEFSPQAPSGQQLSISEEMIEW 469 (469)
T ss_pred HHHHHHHHHhccccCCCCCEEEecCCCCcCceeeEEEEEECCCCCEEEEEEEEEeCCCCCCcEEEEehhhccC
Confidence 568999999999999999 69999999999999999998 22 4899999984 23467776 67888
No 8
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=98.83 E-value=1.3e-08 Score=99.76 Aligned_cols=125 Identities=22% Similarity=0.297 Sum_probs=94.4
Q ss_pred hhhhhhcccccc--cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-----cCCchhHHHHHHhhhccccEEEEee
Q psy8319 151 VGIAFCMSLNFN--LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-----CEPGLGASVMYNLLYNNPQKLMLLA 223 (330)
Q Consensus 151 iG~ll~~~~~~~--~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-----c~~~~~~t~~~~~l~~k~~ri~~i~ 223 (330)
+|++++.+.... ....|.+++++|+|+||++..+++|++|++++.|++ |....+...+.+....+....+++|
T Consensus 2 ~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~~D~~~~~~~c~~~~~~~~~~~~~~~~~v~aiiGp 81 (405)
T cd06385 2 LAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVLGSSENKEGVCSDSAAPLVAVDLKFTHNPWAFIGP 81 (405)
T ss_pred eeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEEccccccCCCCccccchHHHHHHHHhcCCcEEECC
Confidence 678888766532 125789999999999999999999999999999995 5555666666665555555556679
Q ss_pred cccceeeehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecc
Q psy8319 224 GCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPL 275 (330)
Q Consensus 224 ~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~ 275 (330)
.||..+..++..+..|++|+. ..+|+.++.... +.++++++.+++|++++.+
T Consensus 82 ~~S~~~~~va~~a~~~~iP~Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~i 149 (405)
T cd06385 82 GCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAML 149 (405)
T ss_pred CccchHHHHHHHHhccCCcEEccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEE
Confidence 999999888999999999872 235553333333 3577889999999998843
No 9
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=98.76 E-value=1.4e-08 Score=103.00 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=54.2
Q ss_pred HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC----C--cEEEEEEEECC---CCceeec-Ccccc
Q psy8319 22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN----G--SYTKLGFYDTQ---ADNLTWF-DRERW 84 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~----~--~~v~VG~y~~~---~~~l~~~-~~i~W 84 (330)
.++|+++|+||+|+|.+| +|.||+|||+.+.|||.|||. | .+++||.|+.. .+.|.++ ++|.|
T Consensus 437 ~~~l~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~q~~~~~~~~~~v~VG~~~~~~~~~~~l~i~~~~i~W 510 (510)
T cd06364 437 AWQVLKHLRHLNFTDNMGEQVRFDEGGDLVGNYSIINWHLSPEDGSVVFKEVGYYNVYAKKGERLFINESKILW 510 (510)
T ss_pred HHHHHHHHHhcEEecCCCCEEEEecCCCCccceeEEEeeecCCCCcEEEEEEEEEcCCCCCCceEEeccccccC
Confidence 679999999999999998 799999999999999999992 2 37999999842 3468776 67888
No 10
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=98.76 E-value=3.4e-08 Score=96.53 Aligned_cols=113 Identities=20% Similarity=0.294 Sum_probs=87.4
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceee
Q psy8319 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVK 244 (330)
Q Consensus 165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~ 244 (330)
..+..++++|+|+||++..++.|++|++++.|++|++.. ...++..+..+....+++|.||..+..+++.+..|++|+.
T Consensus 17 ~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~~~-~~~~~~~l~~~~v~aiiGp~~s~~~~~va~ia~~~~iP~I 95 (387)
T cd06386 17 ARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGNEA-LFSLVDRSCARKPDLILGPVCEYAAAPVARLASHWNIPMI 95 (387)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCchH-HHHHHHHHHhhCCCEEECCCCccHHHHHHHHHHhCCCcEE
Confidence 567899999999999998888999999999999998743 3333444434444456679999999999999999999883
Q ss_pred c-------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 245 K-------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 245 ~-------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
+ .+|+ ++++.+ +.++++++.++.|+.++.++...
T Consensus 96 s~~a~~~~~s~~~~~yp~-~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~~ 147 (387)
T cd06386 96 SAGALAAGFSHKKSEYSH-LTRVAPSYVKMGETFSALFERFHWRSALLVYEDD 147 (387)
T ss_pred ccccCchhhccCcccCCe-eEEecCchHHHHHHHHHHHHhCCCeEEEEEEEcC
Confidence 2 1333 445544 46778999999999999998644
No 11
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=98.73 E-value=5e-08 Score=95.25 Aligned_cols=129 Identities=24% Similarity=0.339 Sum_probs=100.5
Q ss_pred hhhhhhccc-ccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc----CCchhHHHHHHhhhccccEEEEeec
Q psy8319 151 VGIAFCMSL-NFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC----EPGLGASVMYNLLYNNPQKLMLLAG 224 (330)
Q Consensus 151 iG~ll~~~~-~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c----~~~~~~t~~~~~l~~k~~ri~~i~~ 224 (330)
+|.++++++ ... .+..+..++++|+|+||++..++.|+++++++.|++| ++..+...+...+..+....+++|.
T Consensus 2 ~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~~~a~~~~~~~~v~aiiGp~ 81 (396)
T cd06373 2 LAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGPG 81 (396)
T ss_pred eEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhHHHHHHHHhccCCeEEECCC
Confidence 577888875 222 3467889999999999999888899999999999999 8999888888777666555566699
Q ss_pred ccceeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319 225 CSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 225 cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
||..+..++..+..|++|... .+++ ++++.+ +..+++++.+++|++++.++.+..
T Consensus 82 ~S~~~~av~~~~~~~~ip~Is~~as~~~lt~~~~~~~-~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~~~~ 153 (396)
T cd06373 82 CEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYST-LTRTGPSYTKLGEFVLALHEHFNWSRAALLYHDDK 153 (396)
T ss_pred ccchhHHHHHHHhcCCCceECccCCccccccchhcCc-eeeccccHHHHHHHHHHHHHHcCCeEEEEEEECCC
Confidence 999988888888889888732 2344 444444 346678889999999999976543
No 12
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=98.70 E-value=5.5e-08 Score=97.63 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=92.1
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc-------------cccEEEEeecccceee
Q psy8319 164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN-------------NPQKLMLLAGCSTVCT 230 (330)
Q Consensus 164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~-------------k~~ri~~i~~cs~~~~ 230 (330)
+.....+..+|+|+||++..+++|++|.+.+.|+.|++..++..+++.+.. +....++++.||..+.
T Consensus 38 ~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~~~~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~s~ 117 (469)
T cd06365 38 NYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKALESSLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWALSA 117 (469)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHHHHHHHHHhCCCcccCCccCCCCCceEEEEcCCccHHHH
Confidence 344567999999999999999999999999999999999999998887753 1222334489998888
Q ss_pred ehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 231 TVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 231 ~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
.++.....|++|+. ..+|+++++.++ +.++++++.++.|+.++.++.+.
T Consensus 118 ~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~~ai~~li~~f~W~~Vaiv~~d~ 182 (469)
T cd06365 118 TIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVISDD 182 (469)
T ss_pred HHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHHHHHHHHHHhcCCeEEEEEEecC
Confidence 88888899998872 235765544444 57889999999999999887643
No 13
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=98.70 E-value=4.5e-08 Score=98.17 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=92.1
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc-------------------------cccE
Q psy8319 164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN-------------------------NPQK 218 (330)
Q Consensus 164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~-------------------------k~~r 218 (330)
+.....++.+|+|+||++..+++|++|.+.++||.|++..|+..+++.+.. +...
T Consensus 40 g~~~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 119 (472)
T cd06374 40 GIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGVNPDGQSPGPNKSKKPIV 119 (472)
T ss_pred hHHHHHHHHHHHHHHhCCcccCCCceeccEEEEcCCCchHHHHHHHHHHhhcccccccccccccccCCCcccccCCCCeE
Confidence 345568899999999999999999999999999999999999999888752 1223
Q ss_pred EEEeecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319 219 LMLLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 219 i~~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
.+++|.||..+..++..+..|++|+. ..+|++ +++++ +.++++++.+++|+.++.++.+..
T Consensus 120 aiiGp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~-fRt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~~ 197 (472)
T cd06374 120 GVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYF-LRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGN 197 (472)
T ss_pred EEECCCcchHHHHHHHHhhhhcccccccccCchhhcccccCCce-EEcCCChHHHHHHHHHHHHHCCCcEEEEEEecch
Confidence 34458999888888888888988872 234664 45544 467889999999999999987543
No 14
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=98.67 E-value=5.4e-08 Score=96.75 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=87.5
Q ss_pred chHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc----------------------cccEEEEee
Q psy8319 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN----------------------NPQKLMLLA 223 (330)
Q Consensus 166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~----------------------k~~ri~~i~ 223 (330)
....++++|+|+||++..+++|++|++.+.|+.+++..+...+...+.. +....++++
T Consensus 31 ~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~~~a~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviG~ 110 (452)
T cd06362 31 QRLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALEQSLEFVRASLTKIDDCVYCDGGSPPPNNSPKPVAGVIGA 110 (452)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHHHHHHHHHhhhhhcCCccccccCCCcccccCCCCeEEEECC
Confidence 3378899999999999999999999999999999999888877765532 223334458
Q ss_pred cccceeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 224 GCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 224 ~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
.||..+..++..+..|++|+.. .+|+ ++++++ +.++++++.++.|+.++.++.+.
T Consensus 111 ~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~-~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~~~~ 182 (452)
T cd06362 111 SYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDY-FSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEG 182 (452)
T ss_pred CCCchHHHHHHHhccccCcccccccCchhhccccccCC-EEEecCChHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 8988888888888888887721 3466 444443 46788999999999999998754
No 15
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=98.62 E-value=8e-08 Score=96.17 Aligned_cols=116 Identities=15% Similarity=0.197 Sum_probs=89.8
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc------------------------cccEE
Q psy8319 164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN------------------------NPQKL 219 (330)
Q Consensus 164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~------------------------k~~ri 219 (330)
+.....+..+|+|+||++..+++|++|.+.++|+.|++..++..+++.+.. +....
T Consensus 29 g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~~~~~~~~~~~C~~~~~~~~~~~~~~V~a 108 (458)
T cd06375 29 GIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRASLTKVDTSEYECPDGSYAVQENSPLAIAG 108 (458)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHHHHHHHHHhhhhhcccccccccccCCccccccCCCCeEE
Confidence 456788999999999999999999999999999999999999888776631 11222
Q ss_pred EEeecccceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 220 MLLAGCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 220 ~~i~~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
++++.||..+..++.....|++|+.+ .+|+++++..+ +.++++++.+++|+.++.++.+.
T Consensus 109 VIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~~~~ 184 (458)
T cd06375 109 VIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEG 184 (458)
T ss_pred EEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEEeCc
Confidence 34488888877788888888888731 24664444333 36788999999999999998754
No 16
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=98.62 E-value=4.8e-08 Score=94.15 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CCcEEEEEEEECCCCceeec-CccccC
Q psy8319 20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NGSYTKLGFYDTQADNLTWF-DRERWI 85 (330)
Q Consensus 20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~~~v~VG~y~~~~~~l~~~-~~i~W~ 85 (330)
.-+..|.++|++++|.|.||+|+||+||||. +.|+|.|+| +..+++||.|+. +.++ +.|.|+
T Consensus 298 ~~g~~l~~~l~~~~f~G~tg~v~F~~~G~~~~~~~~I~~l~~~~~~~~VG~W~~----~~~~~~~i~w~ 362 (362)
T cd06367 298 SSGQYLARFLMNVTFDGETGDVSFNEDGYLSNPKLVIINLRRNRKWERVGSWEN----GKLVMRYIVWP 362 (362)
T ss_pred CchHHHHHHHhcccccCCCCceeECCCcccccceEEEEEecCCCcceEEEEEcC----CceecCcCCCC
Confidence 4467999999999999999999999999986 699999999 667999999973 4444 678895
No 17
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=98.61 E-value=5.7e-08 Score=97.15 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=52.4
Q ss_pred HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC-----CcEEEEEEEECCCCceeec-Ccccc
Q psy8319 22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN-----GSYTKLGFYDTQADNLTWF-DRERW 84 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~-----~~~v~VG~y~~~~~~l~~~-~~i~W 84 (330)
+++|+++|++|+|+|.+| +|+||+|||+.+.|+|.+||. ..+++||.|+. .+.++ +.|.|
T Consensus 397 ~~~l~~~L~~v~F~g~tg~~v~Fd~~G~~~~~Ydi~n~q~~~~~~~~~~~VG~w~~---~l~i~~~~i~W 463 (463)
T cd06376 397 GKKLLKYIRAVNFNGSAGTPVMFNENGDAPGRYDIFQYQITNTSSPGYRLIGQWTD---ELQLNIEDMQW 463 (463)
T ss_pred HHHHHHHHHhCCccCCCCCeEEeCCCCCCCCceEEEEEEecCCCceeEEEEEEECC---eeEEccccccC
Confidence 679999999999999999 799999999999999999992 15899999973 56676 67888
No 18
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=98.58 E-value=1.7e-07 Score=91.43 Aligned_cols=127 Identities=15% Similarity=0.167 Sum_probs=92.3
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.+.++... .+..-..++++|+|+||++..+++|+++++++.|++|++..+....... .+....+++|.||..+
T Consensus 2 ig~~~p~sg~~~~~g~~~~~a~~lAie~iN~~g~il~g~~l~~~~~d~~~~~~~a~~~~~~~--~~~V~aviGp~~S~~~ 79 (382)
T cd06371 2 VGVLGPWSCDPIFSKALPDVAARLAVSRINRDPSLSLGYWFDYVLLPEPCETSRALAAFLGY--EGYASAFVGPVNPGYC 79 (382)
T ss_pred ceEecCcccCchhhhhhHHHHHHHHHHHHhCCCCCCCCceEEEEEecCCCChhHHHHHHHcc--cCCceEEECCCCchHH
Confidence 455555544322 2344567899999999999998899999999999999987776554331 2334445569999999
Q ss_pred eehhhhhhcccceeec------------ccCceEEeeeh--hHHHHHHHHHhcceEeecceeccc
Q psy8319 230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT--GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
..++..+..||+|+.+ .+++ ++++++ ...+++++.++.|++++.++....
T Consensus 80 ~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~-f~r~~~~~~~~~~~~~~~~~w~~vaii~~~~~ 143 (382)
T cd06371 80 EAAALLAKEWDKALFSWGCVNYELDDVRSYPT-FARTLPSPSRVLFTVLRYFRWAHVAIVSSPQD 143 (382)
T ss_pred HHHHHHHHhcCceEEecccCchhhcCcccCCC-ceecCCCcHHHHHHHHHHCCCeEEEEEEeccc
Confidence 9999999999998832 2344 445443 345678899999999999987654
No 19
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=98.56 E-value=1.6e-07 Score=88.68 Aligned_cols=114 Identities=21% Similarity=0.317 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec-
Q psy8319 167 CEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK- 245 (330)
Q Consensus 167 c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~- 245 (330)
|..++++|+|+||++..++.+++|++.+.|+.|++......+...+..+....+++|.|+..+..+++.+..|++|...
T Consensus 2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~ 81 (348)
T PF01094_consen 2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTCSDDSFALQAAICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISP 81 (348)
T ss_dssp HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETTTTHHHHHHHHHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeeccCCcccccchhhhccCCCcEEEECCCcccccchhheeecccccceeec
Confidence 6789999999999999999999999999999988888887777777777777777899999888889999999998732
Q ss_pred ------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecccc
Q psy8319 246 ------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITEN 281 (330)
Q Consensus 246 ------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~~ 281 (330)
.+|+ ++++++ ..++++++.++.|+.+..++.....
T Consensus 82 ~~~~~~ls~~~~~~~~-~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~ 133 (348)
T PF01094_consen 82 GSTSPSLSDRKTRYPT-FFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDY 133 (348)
T ss_dssp SGGSGGGGSTTTTTTT-EEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHH
T ss_pred cccccccccchhhccc-cccccccHHHHHHHHHHhhhcCCCceeeeecccccc
Confidence 3456 444444 4688999999999999999876544
No 20
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=98.54 E-value=2e-07 Score=93.27 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=84.7
Q ss_pred chHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc--------------------c--ccEEEEee
Q psy8319 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN--------------------N--PQKLMLLA 223 (330)
Q Consensus 166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~--------------------k--~~ri~~i~ 223 (330)
....++++|+|+||++..+++|++|++.+.|+.+++..++..++..+.. + ....+++|
T Consensus 31 ~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~~~~~a~~~~~~l~~~~~~~~~C~~~~~~~~~~~~~V~aviG~ 110 (463)
T cd06376 31 HRLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGA 110 (463)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCcHHHHHHHHHHHhhhhhcccccCcCCCCCccccCCCCCeEEEECC
Confidence 3478999999999999999999999999999988888777766654321 1 12223448
Q ss_pred cccceeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 224 GCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 224 ~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
.||..+..++.....+++|+.+ .+|++ +++++ +.++++++.+++|+.++.++.+
T Consensus 111 ~~S~~t~ava~i~~~~~iP~Is~~ats~~ls~~~~~~~f-fR~~p~d~~~~~ai~~~i~~~~w~~Vaii~~~ 181 (463)
T cd06376 111 SASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFF-SRVVPPDSFQAQAMVDIVKALGWNYVSTLASE 181 (463)
T ss_pred CCchHHHHHHHHhccccCcccccccCChhhcccccCCce-EEccCCHHHHHHHHHHHHHHcCCeEEEEEEeC
Confidence 8888888788888888888732 24554 45544 3678899999999999999753
No 21
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=98.52 E-value=4.2e-07 Score=89.27 Aligned_cols=127 Identities=25% Similarity=0.338 Sum_probs=95.7
Q ss_pred hhhhhhhcccc-c-ccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 150 LVGIAFCMSLN-F-NLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 150 liG~ll~~~~~-~-~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
.+|.+.++++. . ..+..+..++++|+|+||++..++.|+++++.+.|++|++..+...+...+.. ....+++|.||.
T Consensus 2 ~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp~~S~ 80 (404)
T cd06370 2 KVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRAVSDWWKR-GVVAFIGPECTC 80 (404)
T ss_pred eeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecCCChHHHHHHHHHHHhc-CceEEECCCchh
Confidence 47888888873 4 34677788999999999999988889999999999999999999998887743 344445577764
Q ss_pred eeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319 228 VCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
. ..+..+..|++|... .+|+ ++++.+ +.++++++.++.|++++.++.+..
T Consensus 81 ~--~~a~i~~~~~iP~Is~~a~~~~l~~~~~~~~-f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~ 147 (404)
T cd06370 81 T--TEARLAAAWNLPMISYKCDEEPVSDKSKYPT-FARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDS 147 (404)
T ss_pred H--HHHHHHhhcCCcEEecccCCccccccccCCC-eEEcCCCHHHHHHHHHHHHHHCCCcEEEEEEecCc
Confidence 3 345677888887731 2344 344443 256778889999999999987554
No 22
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=98.50 E-value=3.9e-07 Score=87.21 Aligned_cols=128 Identities=32% Similarity=0.500 Sum_probs=100.2
Q ss_pred hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceee
Q psy8319 151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCT 230 (330)
Q Consensus 151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~ 230 (330)
+|.++++++ -..+..+..++++|+|+||++-..+.|+++++++.|++|++..+...+-..+.......+++|.||..+.
T Consensus 2 IG~~~p~sG-a~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~~~ 80 (350)
T cd06366 2 IGAIFDLSG-SWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAIIGPQCSSVAE 80 (350)
T ss_pred EEEEEecCC-CcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCHHHHHHHHHHHhccCCceEEECCCcHHHHH
Confidence 577778876 4446778899999999999997677899999999999999999999888877665555566688888877
Q ss_pred ehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319 231 TVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 231 ~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
.++..+..|++|... .+++ ++++.+ ...+++++..++|.+++.++.+..
T Consensus 81 a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~-~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~ 146 (350)
T cd06366 81 FVAEVANEWNVPVLSFAATSPSLSSRLQYPY-FFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDD 146 (350)
T ss_pred HHHHHhhcCCeeEEeccCCCccccccccCCc-eEEcccchHhHHHHHHHHHHHCCCcEEEEEEEcCc
Confidence 777888888888621 2345 444443 356788889999999999987543
No 23
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=98.49 E-value=3.9e-07 Score=86.80 Aligned_cols=114 Identities=25% Similarity=0.385 Sum_probs=90.4
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc-------------cccEEEEeecccceeee
Q psy8319 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN-------------NPQKLMLLAGCSTVCTT 231 (330)
Q Consensus 165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~-------------k~~ri~~i~~cs~~~~~ 231 (330)
..+.-++++|++.||++..++.|++|+++..|++|++..+...+...+.. .....+++|.||..+..
T Consensus 27 ~~~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~~~~~~~~~~~~~v~aiiG~~~S~~~~a 106 (348)
T cd06350 27 LQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSPAVALRAALDLLLSGEGTTPPYSCRKQPKVVAVIGPGSSSVSMA 106 (348)
T ss_pred HHHHHHHHHHHHHHcCCCccCCCCceeEEEEecCCcchHHHHHHHHHHhcCCCCCCCCcCCCCCceEEEECCCccHHHHH
Confidence 44456788999999999889999999999999999999999999888776 34555556889888877
Q ss_pred hhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 232 VAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 232 va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
++.....|++|... .+++ ++++.+ ...+++++..++|++++.++.+.
T Consensus 107 ~~~~~~~~~vp~is~~~~~~~ls~~~~~~~-~fr~~p~~~~~~~a~~~~~~~~~~~~v~~l~~~~ 170 (348)
T cd06350 107 VAELLGLFKIPQISYGATSPLLSDKLQFPS-FFRTVPSDTSQALAIVALLKHFGWTWVGLVYSDD 170 (348)
T ss_pred HHHHHhcCcCceecccCCChhhccccccCC-eeEecCCcHHHHHHHHHHHHHCCCeEEEEEEecc
Confidence 78888888888731 2355 445544 36778899999999999998654
No 24
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=98.49 E-value=4.5e-07 Score=89.34 Aligned_cols=112 Identities=20% Similarity=0.154 Sum_probs=87.5
Q ss_pred chHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc------------------cccEEEEeecccc
Q psy8319 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN------------------NPQKLMLLAGCST 227 (330)
Q Consensus 166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~------------------k~~ri~~i~~cs~ 227 (330)
.-..++++|+|+||++. +++|.+|++...|++|++..+...+...+.. +....++++.||.
T Consensus 36 ~~~~am~~AieeIN~~~-~Lpg~~L~~~i~Dt~~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~V~aVIG~~~S~ 114 (403)
T cd06361 36 LQTLAMIHAIEMINNST-LLLGVTLGYEIYDTCSEVTTAMAAVLRFLSKFNCSRSTVEFKCDYSQYVPRIKAVIGAGYSE 114 (403)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCCEEceEEEeCCCChHHHHHHHHHHHhhcccccccccccccCCCCCCCeEEEECCCcch
Confidence 34578999999999998 8899999999999999999999988877753 2233344588888
Q ss_pred eeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 228 VCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
.+..++.....+++|+. ..+|+ ++|+++ +.++++++.+++|+.++.++.+.
T Consensus 115 ~s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~-ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~~d 182 (403)
T cd06361 115 ISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPS-FLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITDD 182 (403)
T ss_pred HHHHHHHHhccCCcceEecCcCCcccCCcccCCC-eeECCCchHhHHHHHHHHHHHcCCcEEEEEEecC
Confidence 88777777777887772 23466 455554 46889999999999999997643
No 25
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=98.49 E-value=3.3e-07 Score=89.82 Aligned_cols=63 Identities=21% Similarity=0.387 Sum_probs=55.4
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee---CCcEEEEEEEECCCCceeec--Ccccc
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI---NGSYTKLGFYDTQADNLTWF--DRERW 84 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q---~~~~v~VG~y~~~~~~l~~~--~~i~W 84 (330)
++.+.+.|++++|.|++|+|.||++|||.+.|.+.|++ +|+++.||.|+..++++++. ++|.|
T Consensus 338 g~~i~~~l~~~~f~G~tG~v~fd~~G~r~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~i~w 405 (405)
T cd06385 338 GTAITQRMWNRTFYGVTGFVKIDDNGDRETDFALWDMTDTESGDFQVVSVYNGTQKQLVAVPGRKIQW 405 (405)
T ss_pred HHHHHHHhhCceEeeceeEEEEcCCCCEeceeEEEEccCCCCCcEEEEEEEcccCcEEEEcCCcccCC
Confidence 57888999999999999999999999999999988774 67899999999877888873 57777
No 26
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=98.47 E-value=2e-07 Score=93.44 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC---C--cEEEEEEEECCCCceeec
Q psy8319 19 KEIADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN---G--SYTKLGFYDTQADNLTWF 79 (330)
Q Consensus 19 ~~~~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~---~--~~v~VG~y~~~~~~l~~~ 79 (330)
...+++|+++|++++|.|++| +|+||+|||+.+.|+|.|||. + .+++||.|+. +.|.++
T Consensus 406 ~~~~~~l~~~l~~v~F~g~tG~~v~Fd~~G~~~~~ydI~n~~~~~~~~~~~~~VG~w~~--~~l~~~ 470 (472)
T cd06374 406 PIDGRKLLEYLLKTSFSGVSGEEVYFDENGDSPGRYDIMNLQYTEDLRFDYINVGSWHE--GDLGID 470 (472)
T ss_pred CCCHHHHHHHHHhCcccCCCCCeEEEcCCCCCCCceEEEEEEECCCCCEEEEEEEEEeC--Cccccc
Confidence 355889999999999999999 799999999999999999993 2 4899999974 345543
No 27
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=98.43 E-value=4.5e-07 Score=89.21 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=59.2
Q ss_pred cCChHHHHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeC--C--cEEEEEEEECCCCceeec-CccccC
Q psy8319 16 YTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN--G--SYTKLGFYDTQADNLTWF-DRERWI 85 (330)
Q Consensus 16 y~~~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~--~--~~v~VG~y~~~~~~l~~~-~~i~W~ 85 (330)
++++.-++.|.++|++++|.|++|+++||++||+...|+|.|+|. + ++++||.|+..++.|.++ ++|+|+
T Consensus 336 ~~~~~~~~~l~~~L~~~~~~g~~g~i~fd~~G~~~~~~~i~~~~~~~~~~~~~~vG~~~~~~~~l~~~~~~i~w~ 410 (410)
T cd06363 336 KRVPVYPWQLLEELKKVNFTLLGQTVRFDENGDPNFGYDIVVWWWDNSSGTFEEVGSYSFYPIRLTINRSKIQWH 410 (410)
T ss_pred CCCCCCHHHHHHHHhccEEecCCcEEEeCCCCCCccceEEEEEEEcCCceeEEEEEEEECCCCEEEEehHhcccC
Confidence 334555778999999999999999999999999888899999962 2 589999999766788886 689995
No 28
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=98.41 E-value=3.6e-07 Score=89.06 Aligned_cols=53 Identities=15% Similarity=0.327 Sum_probs=45.7
Q ss_pred HHHHHHHHh---cceEEeeeeeEEEccCCCcceeEEEEEeeC--C--cEEEEEEEECCCC
Q psy8319 22 ADDIYAAIN---STQFTGVSGDVAFSSQGDRIALTQIEQVIN--G--SYTKLGFYDTQAD 74 (330)
Q Consensus 22 ~~~l~~~l~---~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~--~--~~v~VG~y~~~~~ 74 (330)
+.++.+.|+ +++|+|+||+|.||+||||.+.|.|.|+|+ + .+++||+|+..++
T Consensus 329 g~~l~~~l~~~~~~~f~G~tG~v~fd~~G~r~~~y~i~~~~~~~~~~~~~~vg~~~~~~~ 388 (391)
T cd06372 329 GRQLVSTLRGANQVELQGITGLVLLDEQGKRQMDYSVYALQKSGNSSLFLPFLHYDSHQK 388 (391)
T ss_pred HHHHHHHHhhccCceEeccceeEEECCCCCcceeEEEEeccccCCccceeeEEEecchhh
Confidence 356778888 799999999999999999999999999994 2 4899999986543
No 29
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=98.39 E-value=1.2e-06 Score=84.95 Aligned_cols=130 Identities=23% Similarity=0.414 Sum_probs=99.1
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++... .+..+..++++|+|+||++-..+.|++|++++.|++|++..+...+...+..+....+++|.||...
T Consensus 2 vG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~~~~a~~~a~~l~~~~~v~aiiG~~~s~~~ 81 (389)
T cd06352 2 VGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECSESVALLAAVDLYWEHNVDAFIGPGCPYAC 81 (389)
T ss_pred eEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCchhhhHHHHHHHHhhcCCcEEECCCChhHH
Confidence 466677766443 3577888999999999999877789999999999999999999999888777666666678888877
Q ss_pred eehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceeccc
Q psy8319 230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
..++.....+++|... .+++.++.... +..+++++.+.+|+.+..++.+..
T Consensus 82 ~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~ 148 (389)
T cd06352 82 APVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDS 148 (389)
T ss_pred HHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEecCC
Confidence 7777778888887621 23553433333 345778888899999998876543
No 30
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=98.36 E-value=1.6e-06 Score=84.88 Aligned_cols=113 Identities=22% Similarity=0.253 Sum_probs=81.4
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCC----chhHHHHHHhhhccccEEEEeecccceeeehhhhhhccc
Q psy8319 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEP----GLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWN 240 (330)
Q Consensus 165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~----~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~ 240 (330)
..|.+++++|+|+||++..++.|++|++.+.|++|++ ..+........+.+...++++|.||..+..++..+..|+
T Consensus 18 ~~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~S~~~~av~~i~~~~~ 97 (399)
T cd06384 18 PRVGPAIRMAVERIQNKGKLLRGYTITLLNKSSELNGGCSESLAPLHAVDLKLYSDPDVFFGPGCVYPTASVARFATHWR 97 (399)
T ss_pred hhhHHHHHHHHHHHhccCCcCCCceEEEEEeccCCccccchhhhHHHHHHHHhhcCCCEEECCCCchHHHHHHHHHhhcC
Confidence 4678999999999999988889999999999997654 443333333333344455667999999988899999999
Q ss_pred ceeec-------------ccCceEEeeeh----hHHHHHHHHHhcce-Eeeccee
Q psy8319 241 LVVKK-------------VEPWKLYTMVT----GLLSIDLVILLCWQ-FYDPLQR 277 (330)
Q Consensus 241 ~~~~~-------------~~~~~l~~~v~----~~~~v~li~~~~W~-~v~~~~~ 277 (330)
+|+.. .+|+.++.... +..+..++.++.|+ .++.++.
T Consensus 98 iP~Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaiiy~ 152 (399)
T cd06384 98 LPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALLYL 152 (399)
T ss_pred CcEEeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 98721 23444433333 23467888999999 6777764
No 31
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=98.36 E-value=5.2e-07 Score=89.71 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=45.9
Q ss_pred HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC----CcEEEEEEEECC
Q psy8319 22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN----GSYTKLGFYDTQ 72 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~----~~~v~VG~y~~~ 72 (330)
+++|+++|++++|.|++| +|+||++|||.+.|+|.|||. ..+++||.|++.
T Consensus 392 ~~~l~~~l~~v~f~g~tg~~v~Fd~~G~~~~~y~I~~~~~~~~~~~~~~VG~w~~~ 447 (452)
T cd06362 392 GRKLLFYLRNVSFSGLAGGPVRFDANGDGPGRYDIFNYQRTNGKYDYVKVGSWKGE 447 (452)
T ss_pred HHHHHHHHHhCCcCCCCCceEEECCCCCCCCceEEEEEEEcCCceEEEEEEEEecc
Confidence 678999999999999998 899999999999999999993 248999999743
No 32
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=98.35 E-value=8.8e-07 Score=87.26 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCC----cEEEEEEEECCCCcee
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVING----SYTKLGFYDTQADNLT 77 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~----~~v~VG~y~~~~~~l~ 77 (330)
+++|+++|++++|.|.+|+|.||+|||+.+.|+|.|||++ .+++||.|++.++.+.
T Consensus 340 ~~~l~~~L~~~~f~g~~~~v~Fd~~gd~~~~y~I~~~~~~~~~~~~~~vg~~~~~~~~~~ 399 (403)
T cd06361 340 PWELLGQLKNVTFEDGGNMYHFDANGDLNLGYDVVLWKEDNGHMTVTIMAEYDPQNDVFI 399 (403)
T ss_pred HHHHHHHHheeEEecCCceEEECCCCCCCcceEEEEeEecCCcEEEEEEEEEeCCCCEEe
Confidence 6799999999999999779999999999899999999953 3899999998765443
No 33
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=98.20 E-value=4.7e-06 Score=84.66 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhcccc------------------EEEEeeccccee
Q psy8319 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQ------------------KLMLLAGCSTVC 229 (330)
Q Consensus 168 ~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~------------------ri~~i~~cs~~~ 229 (330)
..++++|+|+||++..++++++|.+.++|+.+++..+...+...+..+.. ..++++.||..+
T Consensus 52 ~~am~~AieeIN~~~~lLp~i~Lg~~i~Dtc~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~v~aVIG~~sS~~s 131 (510)
T cd06364 52 LQAMIFAIEEINNSPTLLPNITLGYRIFDTCNTVSKALEATLSFVAQNKIDSLNLDEFCNCSEHIPSTIAVVGATGSGVS 131 (510)
T ss_pred HHHHHHHHHHHhCCCccCCCCEEeEEEEccCCchHHHHHHHHHHHhcccccccccccccccCCCCCceEEEECCCchhHH
Confidence 57889999999999999999999999999988888888887776643211 133448888887
Q ss_pred eehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..++.....+++|+. ..+|+++++..+ +.++++++.+++|+.++.++.+.
T Consensus 132 ~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd 197 (510)
T cd06364 132 TAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADD 197 (510)
T ss_pred HHHHHHhccccccccccccCCcccCCccccCCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 777888888888873 234554443333 36788999999999999986643
No 34
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=98.20 E-value=2.1e-06 Score=86.03 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=43.5
Q ss_pred HHHHH-HHHhcceEE-----eeee-eEEEccCCCcceeEEEEEee--CC----cEEEEEEEE
Q psy8319 22 ADDIY-AAINSTQFT-----GVSG-DVAFSSQGDRIALTQIEQVI--NG----SYTKLGFYD 70 (330)
Q Consensus 22 ~~~l~-~~l~~vsF~-----GisG-~V~Fd~nGdr~~~y~I~q~q--~~----~~v~VG~y~ 70 (330)
.++|+ ++|+||+|. |.+| +|.||+|||+.+.|||+||| ++ .+++||.|+
T Consensus 392 ~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~nGd~~~~YdI~n~q~~~~~~~~~~~~VG~w~ 453 (458)
T cd06375 392 GKKLYKEYLLNVSFTAPFRPDLADSEVKFDSQGDGLGRYNIFNYQRTGNSYGYRYVGVGAWA 453 (458)
T ss_pred HHHHHHHHHHhccccccccCCCCCCeeEECCCCCCCcceEEEEEEEcCCCCcEEEEEEEEEe
Confidence 56888 599999999 9999 79999999999999999999 22 378999996
No 35
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=98.17 E-value=3.1e-06 Score=82.94 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=47.7
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEE---EEeeCCcEEEEEEEECCCCcee
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQI---EQVINGSYTKLGFYDTQADNLT 77 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I---~q~q~~~~v~VG~y~~~~~~l~ 77 (330)
+..+.++|++++|+|++|+|.||++|||...|.+ .|+++|+++.||+|+..++++.
T Consensus 339 g~~i~~~l~~~~f~GvtG~v~fd~~G~r~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~ 397 (399)
T cd06384 339 GLNITRKMQDRRFWGVTGLVSIDKNNDRDIDFDLWAMTDHETGKYEVVAHYNGITKQIV 397 (399)
T ss_pred cHhHHHHHhCceeecceeEEEECCCCCcccceEEEEeecCCCCeEEEEEEEcCCCcEEe
Confidence 3468899999999999999999999999988877 4667899999999987655443
No 36
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=98.15 E-value=2.4e-06 Score=82.95 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=51.5
Q ss_pred ecCChHHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECC
Q psy8319 15 TYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 15 ~y~~~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~ 72 (330)
+|+..+.++.+.++|++++|.|+||+++||++|||. ..++|+|++++..++||.|++.
T Consensus 320 ~~~~~~~g~~i~~~l~~~~~~G~tG~i~Fd~~G~~~~~~~~i~~~~~~~~~~vg~w~~~ 378 (382)
T cd06380 320 PAVPWEHGIDIERALKKVQFEGLTGNVQFDEFGQRTNYTLDVVELKTRGLRKVGYWNED 378 (382)
T ss_pred CCCCccchHHHHHHHHhcccCCcccceEECCCCCcccccEEEEEecCCCceEEEEECCC
Confidence 566667789999999999999999999999999987 4699999998789999999854
No 37
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=98.09 E-value=4.5e-06 Score=81.24 Aligned_cols=53 Identities=23% Similarity=0.518 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECC
Q psy8319 20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~ 72 (330)
..+..|+++|++++|+|+||+|+||++|+|.. .++|++.++..+++||.|++.
T Consensus 307 ~~G~~l~~~i~~~~f~GlTG~i~F~~~G~r~~~~~~I~~~~~~g~~~vG~W~~~ 360 (364)
T cd06390 307 GQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 360 (364)
T ss_pred ccHHHHHHHHHhhcccccccceeeCCCCCcccceEEEEEecCCcceEEEEECCC
Confidence 35789999999999999999999999999864 689999987679999999854
No 38
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=98.06 E-value=5.1e-06 Score=80.89 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~ 72 (330)
-+..|.++|++++|.|+||+++||++|+|.. .++|++++.+..++||.|++.
T Consensus 313 ~G~~i~~~l~~~~~~GlTG~i~Fd~~G~r~~~~~~ii~l~~~g~~kvG~W~~~ 365 (370)
T cd06389 313 QGVEIERALKQVQVEGLTGNIKFDQNGKRINYTINVMELKSNGPRKIGYWSEV 365 (370)
T ss_pred CcHHHHHHHHhcccCccccceEeCCCCccccceEEEEEecCCcceEEEEEcCC
Confidence 4578999999999999999999999999987 899999997778999999854
No 39
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=98.02 E-value=1.6e-05 Score=75.42 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=85.3
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-cCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccce
Q psy8319 164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-CEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLV 242 (330)
Q Consensus 164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~ 242 (330)
+..+.-+.++|+|+||++..++.|.+|++...|++ |++..+...+-..+- +....++++.||..+..++..+..+++|
T Consensus 11 g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~-~~V~aiiG~~~S~~~~av~~~~~~~~vP 89 (327)
T cd06382 11 DSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQ-QGVAAIFGPSSSEASSIVQSICDAKEIP 89 (327)
T ss_pred chHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhh-cCcEEEECCCChhHHHHHHHHHhccCCC
Confidence 45667899999999999999888999999999999 888887777655553 3333344588887777777788888887
Q ss_pred eec---------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 243 VKK---------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 243 ~~~---------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
... .+++. +++.+ +..+++++..+.|+.++.++.+.
T Consensus 90 ~Is~~~~~~~~~~~~~~-fr~~p~~~~~~~a~~~~~~~~~w~~vavl~~~~ 139 (327)
T cd06382 90 HIQTRWDPEPKSNRQFT-INLYPSNADLSRAYADIVKSFNWKSFTIIYESA 139 (327)
T ss_pred ceeccCCcCccccccce-EEeCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Confidence 632 12343 34333 35678888899999999998765
No 40
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=97.99 E-value=1.6e-05 Score=76.82 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=45.3
Q ss_pred HHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee--CCcEEEEEEEECCCCc
Q psy8319 23 DDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI--NGSYTKLGFYDTQADN 75 (330)
Q Consensus 23 ~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q--~~~~v~VG~y~~~~~~ 75 (330)
..+.+.|+|.+|+|++|+|++|+||||.++|.+.-.. .+++..||.|++..++
T Consensus 314 ~~I~~~m~NrTF~GitG~V~IDeNGDRd~dfsLl~ms~~tg~y~vV~~y~t~~n~ 368 (380)
T cd06369 314 FSFINEFRNISFEGAGGPYTLDEYGDRDVNFTLLYTSTDTSKYKVLFEFDTSTNK 368 (380)
T ss_pred HHHHHHHhCcceecCCCceEeCCCCCccCceEEEEeeCCCCCeEEEEEEECCCCe
Confidence 3456678999999999999999999999999998765 4689999999976543
No 41
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=97.99 E-value=1.4e-05 Score=78.17 Aligned_cols=56 Identities=21% Similarity=0.437 Sum_probs=48.7
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeC---CcEEEEEEEECCCCcee
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN---GSYTKLGFYDTQADNLT 77 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~---~~~v~VG~y~~~~~~l~ 77 (330)
++.|.+.|++++|+|+||+|.||++|||...|.+..+++ +.++.||.|..+.+++.
T Consensus 326 g~~l~~~l~~~~f~G~tG~v~~d~~g~r~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (387)
T cd06386 326 GTKITQRMWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTYEVVGNYFGKNGRFE 384 (387)
T ss_pred HHHHHHHHhCCceeeccccEEECCCCCccccEEEEEccCCCCccEEEEeEEccccceEE
Confidence 678889999999999999999999999999999999974 57999999986544443
No 42
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=97.93 E-value=1e-05 Score=79.00 Aligned_cols=55 Identities=18% Similarity=0.410 Sum_probs=47.1
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEe---eCCcEEEEEEEECCCCce
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQV---INGSYTKLGFYDTQADNL 76 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~---q~~~~v~VG~y~~~~~~l 76 (330)
++.+.+.|++++|+|++|++.||++|||...|.+.++ ++|+++.||.|+..++++
T Consensus 336 ~~~i~~~l~~~~f~G~tG~v~fd~~G~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~ 393 (396)
T cd06373 336 GTNITRRMWNRTFEGITGNVSIDENGDRESDFSLWDMTDTETGTFEVVANYNGSNKTI 393 (396)
T ss_pred hHHHHHHhcCCceecccCceEeecCCcccceeeeeeccCCCCceEEEEeeccccccce
Confidence 4678889999999999999999999999999988655 578999999998755443
No 43
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=97.93 E-value=3.4e-05 Score=75.89 Aligned_cols=114 Identities=23% Similarity=0.250 Sum_probs=83.1
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc---------------cccEEEEeeccccee
Q psy8319 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN---------------NPQKLMLLAGCSTVC 229 (330)
Q Consensus 165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~---------------k~~ri~~i~~cs~~~ 229 (330)
.....++++|+|+||++..+++|++++++..|+ |++..+...+...+.. +.....++|.||..+
T Consensus 42 ~~~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~-~~~~~a~~~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~~~ 120 (410)
T cd06363 42 YRLFQAMRFAVEEINNSTSLLPGVTLGYEIFDH-CSDSANFPPTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSSTLA 120 (410)
T ss_pred HHHHHHHHHHHHHHhCCCccCCCCeeceEEEec-CCcHHHHHHHHHHHhccCcccCcccccccCCCCeEEEECCCccHHH
Confidence 344678999999999999999999999999998 7777777776665532 233334458888887
Q ss_pred eehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..++..+..|++|... .+|+.++.... ..++++++..+.|++++.++.+.
T Consensus 121 ~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~k~vaii~~~~ 186 (410)
T cd06363 121 LTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDD 186 (410)
T ss_pred HHHHHHhcccccccccccccCccccccccCCCeeEecCCcHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 7777788888887621 23454433333 36788889999999999997643
No 44
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.90 E-value=1.3e-05 Score=78.26 Aligned_cols=53 Identities=15% Similarity=0.424 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECCC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQA 73 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~~ 73 (330)
.+..|.++|++++|.|+||+++||++|+|.. .++|++.+.+..++||+|++..
T Consensus 314 ~G~~i~~~lk~~~~~GlTG~i~Fd~~G~r~~~~l~Ii~l~~~g~~kvG~W~~~~ 367 (371)
T cd06388 314 QGIDMERTLKQVRIQGLTGNIQFDHYGRRVNYTMDVFELKSNGPRKIGYWNDMD 367 (371)
T ss_pred ccHHHHHHHHhcCcCCCccceeECCCCCcccceEEEEEccCCCceEEEEEcCCC
Confidence 3578999999999999999999999999987 8999999866789999998643
No 45
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=97.89 E-value=5.1e-05 Score=74.82 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=85.1
Q ss_pred hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEE--EeecCCcCCchhHHHHHHhhhccccEEEEee-cccc
Q psy8319 151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQL--HWNDSECEPGLGASVMYNLLYNNPQKLMLLA-GCST 227 (330)
Q Consensus 151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l--~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~-~cs~ 227 (330)
+|+++...+.. -..+.++|+++||++..++++++|++ .+.|+ |++..+...+.+.+. +....+++| +|+.
T Consensus 2 IGaif~~~s~~-----~~~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~-~d~f~a~~~~c~l~~-~gv~ai~Gp~~~~~ 74 (400)
T cd06391 2 IGAIFDESAKK-----DDEVFRMAVADLNQNNEILQTEKITVSVTFVDG-NNPFQAVQEACELMN-QGILALVSSIGCTS 74 (400)
T ss_pred cceeeccCCch-----HHHHHHHHHHHhcCCccccCCCcceEEEEEeeC-CCcHHHHHHHHHHHh-CCeEEEECCCcchH
Confidence 56777665532 24699999999999999999995555 89999 699999999999994 444455666 6765
Q ss_pred eeeehhhhhhcccceeec----------------------ccCceEEeee-hhHHHHHHHHHhcceEeecceecc
Q psy8319 228 VCTTVAEAAKMWNLVVKK----------------------VEPWKLYTMV-TGLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~----------------------~~~~~l~~~v-~~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
. ..+++.+..|++|... .++++++... -..++++++.++.|+.+..++...
T Consensus 75 ~-~~v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~rp~~~~~~ai~~li~~f~W~~v~i~~d~~ 148 (400)
T cd06391 75 A-GSLQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVRPPVYLNDVILRVVTEYAWQKFIIFYDTD 148 (400)
T ss_pred H-HHHHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEecChHHHHHHHHHHHHHcCCcEEEEEEeCC
Confidence 5 4556677777666442 1222222110 147889999999999998776543
No 46
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=97.84 E-value=2.5e-05 Score=77.01 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-----CCcEEEEEEEECC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-----NGSYTKLGFYDTQ 72 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-----~~~~v~VG~y~~~ 72 (330)
.+..|+++|++++|+|+||+|+||++|.|. ..++|++.+ +..+++||+|++.
T Consensus 338 ~G~~ll~~i~~~~f~GlTG~i~f~~~g~r~~~~~dIin~~~~~~~~~g~rkiG~Ws~~ 395 (400)
T cd06391 338 GGRSMLETIKKGGVSGLTGELEFNENGGNPNVHFEILGTNYGEDLGRGVRKLGCWNPI 395 (400)
T ss_pred ChHHHHHHHHhcCcccceeceEECCCCCccCCceEEEEeeccccCCCcceEEEEEcCC
Confidence 478999999999999999999999999885 479999986 4468999999864
No 47
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.84 E-value=7.4e-05 Score=70.46 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=91.7
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..- .+..+.-+.++|+|+||++-.+ .|.++++++.|++|++..+...+-..+.......++++.||..+
T Consensus 2 IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi-~G~~iel~~~D~~~~p~~a~~~a~~li~~~~v~~viG~~~s~~~ 80 (312)
T cd06346 2 IGILLPLTGDLASYGPPMADAAELAVKEVNAAGGV-LGEPVTLVTADTQTDPAAGVAAATKLVNVDGVPGIVGAACSGVT 80 (312)
T ss_pred ceeeccCCCchhhcChhHHHHHHHHHHHHHHhCCC-CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCEEEccccchhh
Confidence 577777777554 2556778899999999998776 79999999999999999999888887766344445567777776
Q ss_pred eeh-hhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 230 TTV-AEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~v-a~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..+ +......++|... .+++ ++++.+ ...+++.+....|++++.++...
T Consensus 81 ~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~-~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~ 147 (312)
T cd06346 81 IAALTSVAVPNGVVMISPSSTSPTLTTLDDNGL-FFRTAPSDALQGQALAQLAAERGYKSVATTYINN 147 (312)
T ss_pred HhhhhhhhccCCcEEEecCCCCccceecCCCce-EEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccC
Confidence 655 5566666666521 1334 444443 24567788888899999987643
No 48
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.76 E-value=3.2e-05 Score=75.58 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECC
Q psy8319 20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~ 72 (330)
..+..|+++|++++|.|+||+++||++|.|. ..++|++..+...++||.|++.
T Consensus 315 ~~G~~l~~~ik~v~~~GLTG~i~F~~~G~R~~~~ldIinl~~~g~~kIG~W~~~ 368 (372)
T cd06387 315 SQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKPSGSRKAGYWNEY 368 (372)
T ss_pred cchHHHHHHHHhcccCCCccceeeCCCCCcccceEEEEEecCCCceeEEEECCC
Confidence 4578999999999999999999999999985 5799999986678999999854
No 49
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=97.76 E-value=8.8e-05 Score=71.99 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=89.7
Q ss_pred hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-cCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-CEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|+++... +.....+.++|+++||++...+..++|.+.+.+.. |++..+...+.+.+- +.....++|.||..+
T Consensus 2 iG~if~~~-----~~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~-~~V~aiiGp~~s~~~ 75 (382)
T cd06380 2 IGGLFDVD-----EDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLS-RGVFAIFGSYDKSSV 75 (382)
T ss_pred ceeEECCC-----ChHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHh-cCcEEEEecCcHHHH
Confidence 45555544 24567899999999999887888999999888887 789998888888884 434444568888777
Q ss_pred eehhhhhhcccceee----------cccCceEEeeeh--hHHHHHHHHHhcceEeecceeccc
Q psy8319 230 TTVAEAAKMWNLVVK----------KVEPWKLYTMVT--GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 230 ~~va~~~~~w~~~~~----------~~~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
..++..+..+++|.. ..+++ ++++.+ ..++++++.+++|+.++.++....
T Consensus 76 ~~~~~~~~~~~iP~i~~~~~~~~l~~~~~~-~fr~~p~~~~a~~~~~~~~~wk~vaii~~~~~ 137 (382)
T cd06380 76 NTLTSYSDALHVPFITPSFPTNDLDDGNQF-VLQMRPSLIQALVDLIEHYGWRKVVYLYDSDR 137 (382)
T ss_pred HHHHHHHhcCCCCeEecCCCcccCCCCCcE-EEEeccchhHHHHHHHHhcCCeEEEEEECCCc
Confidence 777777788888763 12334 333333 346678889999999999987543
No 50
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=97.74 E-value=0.0001 Score=67.35 Aligned_cols=113 Identities=21% Similarity=0.201 Sum_probs=85.4
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc----cccEEEEeecccceeeehhhhhhccc
Q psy8319 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN----NPQKLMLLAGCSTVCTTVAEAAKMWN 240 (330)
Q Consensus 165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~----k~~ri~~i~~cs~~~~~va~~~~~w~ 240 (330)
..+......|++.+|++ +.|+++++...|+.|++..+.......+.. +....++++.|+.....++.....++
T Consensus 19 ~~~~~~~~~~~~~~n~~---~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~aiiG~~~s~~~~~v~~~~~~~~ 95 (298)
T cd06269 19 AFRAAAALFAVEEINND---LPNTTLGYEIYDSCCSPSDAFSAALDLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALH 95 (298)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCeeeeEEEecCCChHHHHHHHHHHHhcCCCCCceEEEECCCCchHHHHHHHHhccCC
Confidence 45566778888889887 889999999999999999998888877754 33333445888777777778888888
Q ss_pred ceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceeccc
Q psy8319 241 LVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 241 ~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
+|... .+|+.++.... ..++++++.+++|+.++.++.+..
T Consensus 96 iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~ 151 (298)
T cd06269 96 IPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDD 151 (298)
T ss_pred CcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEecch
Confidence 88732 34554443333 468899999999999999987654
No 51
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=97.73 E-value=3.6e-05 Score=75.87 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEee-----CCcEEEEEEEECC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVI-----NGSYTKLGFYDTQ 72 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q-----~~~~v~VG~y~~~ 72 (330)
-+..|+++|++++|+|+||+|+||++|.|.. .++|.+++ +..+++||+|++.
T Consensus 338 ~G~~ll~~ik~v~f~GLTG~I~F~~~G~r~~~~ldIi~l~~~~~~g~g~~~iG~W~~~ 395 (400)
T cd06392 338 GGRSMLETIKKGHITGLTGVMEFKEDGANPHVQFEILGTSYSETFGKDVRRLATWDSE 395 (400)
T ss_pred ChHHHHHHHHhCCCccCccceeECCCCCCcCCceEEEeccccccCCCCceEeEEecCC
Confidence 3679999999999999999999999998864 68999976 2248999999864
No 52
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=97.71 E-value=2.7e-05 Score=76.49 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=36.6
Q ss_pred HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeCC
Q psy8319 22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVING 61 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~~ 61 (330)
++++.++|++++|.|+|| +|.||++|||.+.|.+.++|+|
T Consensus 344 g~~i~~~l~~~~f~GvtG~~v~fd~~G~~~~~y~v~~~~~~ 384 (404)
T cd06370 344 GTAIVSHILNRTYRSITGFDMYIDENGDAEGNYSVLALQPI 384 (404)
T ss_pred HHHHHHHHhCcccccccCceEEEcCCCCcccceEEEEeccc
Confidence 457889999999999999 8999999999999999999865
No 53
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=97.66 E-value=0.00017 Score=70.33 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=88.8
Q ss_pred hhhhhhhhccc-ccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeecc
Q psy8319 149 MLVGIAFCMSL-NFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGC 225 (330)
Q Consensus 149 iliG~ll~~~~-~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~c 225 (330)
+.||++++..+ .-- .+..-..+.++|+|+||++..+++++.|.+..++..| ++..+...+.+.+ .+....+++|.|
T Consensus 3 i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~~~~~~~l-~~~V~AiiGp~~ 81 (384)
T cd06393 3 IRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQL-ALGVVAIFGPSQ 81 (384)
T ss_pred eeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHHHHhhccc-ccCcEEEECCCC
Confidence 45677766322 211 1233467899999999999999999999999998775 5534444444444 233334455888
Q ss_pred cceeeehhhhhhcccceeec---------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 226 STVCTTVAEAAKMWNLVVKK---------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 226 s~~~~~va~~~~~w~~~~~~---------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
|..+..++..+..+++|... ..+++++++.+ ..++++++.++.|+.++.++.+.
T Consensus 82 S~~~~av~~i~~~~~iP~Is~~~t~~~lt~~~~~~~~~~~~~~~~~~a~~~~~~~~~wk~vaily~~~ 149 (384)
T cd06393 82 GSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDS 149 (384)
T ss_pred hHHHHHHHHHHhccCCCeEeccCCCcccCccceeEEEeccCHHHHHHHHHHHHHHcCCcEEEEEEeCc
Confidence 88888888888899988732 12333444433 35667889999999999998744
No 54
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=97.58 E-value=0.00022 Score=67.19 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=87.4
Q ss_pred hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecC-CcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDS-ECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds-~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|++++..+ .....+.++|+|+||++..++.++++.+...|+ ++++..+...+-..+. +.....+++.||..+
T Consensus 2 iG~i~~~~~-----~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~~a~~li~-~~V~aiiG~~~S~~~ 75 (324)
T cd06368 2 IGAIFDEDA-----RQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLS-QGVAAIFGPSSSSSA 75 (324)
T ss_pred EEEEeCCCC-----hHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHHHHHHHHh-cCcEEEECCCCHHHH
Confidence 455555544 356788999999999998888888999999987 6999888777766554 444445568888777
Q ss_pred eehhhhhhcccceeec-------c-cCceE-Eeee---hhHHHHHHHHHhcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKK-------V-EPWKL-YTMV---TGLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~-------~-~~~~l-~~~v---~~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..++..+..+++|... . .++.+ ++.. .+..+++++.+++|+.++.++...
T Consensus 76 ~av~~i~~~~~ip~is~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~ 137 (324)
T cd06368 76 NTVQSICDALEIPHITTSWSPNPKPRQFTINLYPSMRDLSDALLDLIKYFGWRKFVYIYDSD 137 (324)
T ss_pred HHHHHHHhccCCCcEEecCCcCCCCCcceEEecCCHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 7777788888887632 1 11211 1111 135678899999999999998643
No 55
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=97.57 E-value=0.00029 Score=67.81 Aligned_cols=128 Identities=10% Similarity=0.032 Sum_probs=85.4
Q ss_pred hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce-e
Q psy8319 151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV-C 229 (330)
Q Consensus 151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~-~ 229 (330)
+|+++...+.. +.....+.+||+|++|++...+.+.+|+++..|.+-++....+.....++.+-....++|..|.. .
T Consensus 2 iG~i~d~~s~~--G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~~gV~AIiGp~ss~~~~ 79 (333)
T cd06394 2 IAAILDDPMEC--GRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILPKGVVSVLGPSSSPASS 79 (333)
T ss_pred ceeeecCCccc--cHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccChHHHHHHHHHHHhcCeEEEECCCCchHHH
Confidence 57777776644 45678899999999998877777789999999999988644444444444554443445655533 2
Q ss_pred eehhhhhhcccceeeccc-------CceEE---eeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319 230 TTVAEAAKMWNLVVKKVE-------PWKLY---TMVT-----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~~~-------~~~l~---~~v~-----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
..++..+...++|..... ++..+ .+-+ ..++++++.+++|+.+..+|++.+
T Consensus 80 ~~v~~i~~~~~VP~Is~~~~~~~~~~~~~~~~i~l~P~~~~~~~Ai~dli~~~~W~~v~~iYe~d~ 145 (333)
T cd06394 80 SIVSHICGEKEIPHFKVGPEETPKLQYLRFASVNLHPSNEDISVAVAGILNSFNYPTASLICAKAE 145 (333)
T ss_pred HHHHHHhhccCCceEEeccccCcccccccceEEEecCCHHHHHHHHHHHHHhcCCCEEEEEEeCcH
Confidence 345555555555553321 12211 2212 468899999999999999998664
No 56
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=97.52 E-value=0.00017 Score=70.22 Aligned_cols=61 Identities=11% Similarity=0.256 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeC-CcEEEEEEEECCCCceeecCccccCC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVIN-GSYTKLGFYDTQADNLTWFDRERWIG 86 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~-~~~v~VG~y~~~~~~l~~~~~i~W~~ 86 (330)
-++.|+++|++++|+|. +++||++|+|. ..++|++++. ..+++||.|+ ++.|++. ...||+
T Consensus 300 ~G~~l~~~l~~v~~~G~--~i~F~~~G~r~~~~ldIinl~~~~g~~kVG~W~--~~~L~~~-~~~wp~ 362 (362)
T cd06378 300 PPNTLHRYMMNVTWEGR--DLSFTEDGYLVNPKLVVISLNKERVWEEVGKWE--NGSLRLK-YPVWPR 362 (362)
T ss_pred chHHHHHHhhcceECCC--ceeECCCCeEccceEEEEEecCCCCceEEEEEc--CCeEEEe-cCCCCC
Confidence 47799999999999996 99999999986 4699999985 3689999998 3567774 347864
No 57
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=97.51 E-value=0.00037 Score=66.29 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=92.2
Q ss_pred hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCC---CCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDL---LPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~l---l~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
+|.+.++++..-. +..+..++++|+++||++-.+ ..|++++++..|++|++..+...+-..+..+....++++.||
T Consensus 2 IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG~~~s 81 (345)
T cd06338 2 IGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSNPARAARAYERLITQDKVDFLLGPYSS 81 (345)
T ss_pred eeEEEeCCCccccccHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEecCCCCHHHHHHHHHHHHhhcCccEEecCCcc
Confidence 5777788776542 566788999999999987544 258999999999999999999888777765455555567777
Q ss_pred ceeeehhhhhhcccceeec-----------ccCceEEeeeh----hHHHHHHHHHhc--ceEeecceecc
Q psy8319 227 TVCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT----GLLSIDLVILLC--WQFYDPLQRIT 279 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~----~~~~v~li~~~~--W~~v~~~~~~~ 279 (330)
..+..+++.....++|... .+++.++.... ...+++.+.... |.+++.++...
T Consensus 82 ~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 151 (345)
T cd06338 82 GLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYADD 151 (345)
T ss_pred hhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 6666666666667766521 23443333332 346677888777 99999997654
No 58
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=97.44 E-value=0.00018 Score=70.12 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=43.7
Q ss_pred HHHHHHHhcceEEeeeeeEEEcc-CCCc-ceeEEEEEeeCCcEEEEEEEECCC
Q psy8319 23 DDIYAAINSTQFTGVSGDVAFSS-QGDR-IALTQIEQVINGSYTKLGFYDTQA 73 (330)
Q Consensus 23 ~~l~~~l~~vsF~GisG~V~Fd~-nGdr-~~~y~I~q~q~~~~v~VG~y~~~~ 73 (330)
+.+.++|++++|.|+||+++||+ +|.| ...++|+++.++.+++||.|++..
T Consensus 327 ~~i~~~l~~~~~~GltG~i~Fd~~~g~r~~~~~~i~~~~~~g~~~vg~W~~~~ 379 (384)
T cd06393 327 GRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWNPNT 379 (384)
T ss_pred HHHHHHHhheeecccccceEecCCCCeeeeeEEEEEEecCCcceeeEEEcCCC
Confidence 58999999999999999999996 5666 457899999877889999998643
No 59
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=97.35 E-value=0.00048 Score=66.78 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=45.8
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeC--CcEEEEEEEECCC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN--GSYTKLGFYDTQA 73 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~--~~~v~VG~y~~~~ 73 (330)
++.+.+.|++++|.|++|++.||++|||.+.|+|.++|+ +++..++.++...
T Consensus 330 ~~~v~~~l~~~~f~g~~G~v~fd~~G~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 383 (389)
T cd06352 330 GLIITRRMWNRTFSGITGPVTIDENGDREGDYSLLDLDSTGGQLEVVYLYDTSS 383 (389)
T ss_pred hHHHHHHhcCcEEEeeeeeEEEcCCCCeeeeEEEEEecCCCceEEEEEeccccc
Confidence 456788899999999999999999999999999999994 5789999987543
No 60
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=97.34 E-value=0.00099 Score=62.81 Aligned_cols=126 Identities=19% Similarity=0.105 Sum_probs=86.8
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..- .+..+..++++|++++|++ ....|++++++..|++|++..+...+-..+.. .....+++.||..+
T Consensus 2 iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~-ggi~g~~i~~~~~D~~~~~~~~~~~~~~li~~-~v~aiiG~~~s~~~ 79 (334)
T cd06342 2 IGVAGPLTGPNAALGKDIKNGAQLAVEDINAK-GGGKGVKLELVVEDDQADPKQAVAVAQKLVDD-GVVGVVGHLNSGVT 79 (334)
T ss_pred eeEeccCCCcchhhcHHHHHHHHHHHHHHHhc-CCCCCeEEEEEEecCCCChHHHHHHHHHHHhC-CceEEECCCccHhH
Confidence 567777776543 2566788999999999988 45579999999999999998887666555544 33334447777776
Q ss_pred eehhhhhhcccceeec-----------ccCceEEeeeh-----hHHHHHHH-HHhcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKK-----------VEPWKLYTMVT-----GLLSIDLV-ILLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~-----------~~~~~l~~~v~-----~~~~v~li-~~~~W~~v~~~~~~~ 279 (330)
..+++....+++|... .+++ .+++.+ ...+++.+ ..+.|.+++.++.+.
T Consensus 80 ~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 145 (334)
T cd06342 80 IPASPIYADAGIVMISPAATNPKLTERGYKN-VFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKT 145 (334)
T ss_pred HHhHHHHHhCCCeEEecCCCCchhhcCCCce-EEeccCCcHHHHHHHHHHHHHhcCCCEEEEEeCCc
Confidence 6667777777777632 1233 344433 23445544 467899999887654
No 61
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=97.32 E-value=0.0009 Score=66.07 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhhhcCCCCCCCceEEEEe-ecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec
Q psy8319 167 CEPAAKLALEDVNNATDLLPGFKLQLHW-NDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK 245 (330)
Q Consensus 167 c~~~~~~A~~~iN~~~~ll~gf~l~l~~-~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~ 245 (330)
-..+.++|++++|++..++.+++|.+.. +++.||+..+...+-+.| .+-....++|..+..+..+++.+...++|..+
T Consensus 13 ~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~-~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is 91 (400)
T cd06392 13 DDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLM-TQGILALVTSTGCASANALQSLTDAMHIPHLF 91 (400)
T ss_pred HHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHH-hcCeEEEECCCchhHHHHHHHHhccCcCCcEe
Confidence 3678899999999999999999999987 999999999999998888 44443344565554445556666666666432
Q ss_pred c----------------------cCceEEee-ehhHHHHHHHHHhcceEeecceecc
Q psy8319 246 V----------------------EPWKLYTM-VTGLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 246 ~----------------------~~~~l~~~-v~~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
. ++.+++.. ...-++++++.++.|+++..+|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~~~~~~Ai~dlV~~~~W~~v~~iYD~d 148 (400)
T cd06392 92 VQRNSGGSPRTACHLNPSPEGEEYTLAARPPVRLNDVMLKLVTELRWQKFIVFYDSE 148 (400)
T ss_pred ecccccccccccccCCCCcCcCceeEEecCchHHHHHHHHHHHhCCCcEEEEEEECc
Confidence 1 11222222 0356899999999999999999644
No 62
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=97.30 E-value=0.0012 Score=63.63 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=90.0
Q ss_pred hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce--
Q psy8319 151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV-- 228 (330)
Q Consensus 151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~-- 228 (330)
+|++++..+ -..+.+.|+..+|.+.....+.++++...|++++|..+.....+.+..+...+++++.||..
T Consensus 5 ig~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~d~~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~~~ 77 (362)
T cd06367 5 IGVVLSGSS-------SEPAFRDAVTAANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDEEA 77 (362)
T ss_pred EEEEecCCc-------chhhHHHHhhhccccccCCcccceEEEEEecCCCHHHHHHHHHHHhcccceEEEEecCCCCccc
Confidence 455555542 24677888888887776778999999999999999999888888887665554555777776
Q ss_pred -eeehhhhhhcccceeec-------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319 229 -CTTVAEAAKMWNLVVKK-------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 229 -~~~va~~~~~w~~~~~~-------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
+..++..+..+++|+.. .+++ ++++.+ +.++++++.+++|..++.++.+..
T Consensus 78 ~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~-~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~ 147 (362)
T cd06367 78 VAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSL-FLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDP 147 (362)
T ss_pred hhhhhhhhhhhhcCcEEEeeccccccccCCCcccc-eEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCc
Confidence 66667778888888721 2344 344444 467889999999999999988654
No 63
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=97.30 E-value=0.0012 Score=60.09 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=88.1
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+++..+... .+..+..++++|++++|++. ...|++++++..|++|++..+...+-..+.......++++.|+...
T Consensus 2 IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~-g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~~ 80 (299)
T cd04509 2 IGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKG-GIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVA 80 (299)
T ss_pred eeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHHH
Confidence 566677765422 34567789999999999886 5789999999999999988877766555544244445557776555
Q ss_pred eehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
...++....+++|... .+++.+..... +..+++.+...+|..+..++...
T Consensus 81 ~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~ 146 (299)
T cd04509 81 LAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDD 146 (299)
T ss_pred HHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEecCc
Confidence 5556666677777622 13443333222 35678888999999999887644
No 64
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.29 E-value=0.00096 Score=63.62 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=89.8
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..- .+..+.-++++|++++|++-. ..|.++++.+.|++|++..+...+-..+-.+...+++++.||..+
T Consensus 2 IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~gg-i~g~~v~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 80 (344)
T cd06345 2 IGVLAPLSGGASTTGEAMWNGAELAAEEINAAGG-ILGRKVELVFEDTEGSPEDAVRAFERLVSQDKVDAVVGGYSSEVV 80 (344)
T ss_pred eeEEEecCCcccccCHHHHHHHHHHHHHHHHcCC-CCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEECCcchHHH
Confidence 466677766443 256778899999999998754 468999999999999999988888777765455556668887776
Q ss_pred eehhhhhhcccceeec---------------ccCceEEeeeh-----hHHHHHHHHH-----hcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKK---------------VEPWKLYTMVT-----GLLSIDLVIL-----LCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~---------------~~~~~l~~~v~-----~~~~v~li~~-----~~W~~v~~~~~~~ 279 (330)
..+++....+++|... .+++ ++++.+ ...+++.+.. ..|++++.++.+.
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~-~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~ 154 (344)
T cd06345 81 LALQDVAAENKVPFIVTGAASPEITTADDYETYKY-VFRAGPTNSSYAQSVADALKETLVDKHGFKTAAIVAEDA 154 (344)
T ss_pred HHHHHHHHHcCCcEEeccCCCCcccccccccCCce-EEecCCCcHHHHHHHHHHHHHhhcccCCCceEEEEecCc
Confidence 6666777777776631 1234 344433 2344566655 7999999987653
No 65
>KOG4440|consensus
Probab=97.13 E-value=0.0002 Score=72.20 Aligned_cols=68 Identities=29% Similarity=0.454 Sum_probs=49.5
Q ss_pred HHHHHHHHhc-ceEEeeeeeEEEccCCCcc-eeEEEEEe-eCCcEEEEEEEECCCCceeec-CccccCCC--CCCC
Q psy8319 22 ADDIYAAINS-TQFTGVSGDVAFSSQGDRI-ALTQIEQV-INGSYTKLGFYDTQADNLTWF-DRERWIGG--KVPQ 91 (330)
Q Consensus 22 ~~~l~~~l~~-vsF~GisG~V~Fd~nGdr~-~~y~I~q~-q~~~~v~VG~y~~~~~~l~~~-~~i~W~~~--~~P~ 91 (330)
...|.+.+.. -.-.|.||.|+||++|||. ++|||.|+ |+.+.|-+|.||.. ++..| ++|.|+|| ..|.
T Consensus 324 g~~l~~~l~s~~~~~g~TgrV~Fnd~gdRi~a~YdiiN~hq~rk~Vg~~~yd~~--r~~~nd~~IiWpGg~~~KP~ 397 (993)
T KOG4440|consen 324 GPLLKRVLMSSKYADGVTGRVEFNDDGDRIFANYDIINLHQNRKLVGVGIYDGT--RVIPNDRKIIWPGGETEKPR 397 (993)
T ss_pred cHHHHHHHhhhcccCCcceeEEEcCCCceeeccceeEehhhhhhhhhhccccce--eeccCCceeecCCCCcCCCc
Confidence 4455566554 3345899999999999998 58999999 56677888888742 23334 68999998 3454
No 66
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=97.06 E-value=0.0032 Score=61.41 Aligned_cols=111 Identities=12% Similarity=-0.002 Sum_probs=80.5
Q ss_pred chHHHHHHHHHhhhcCCCCCCCceEEEEeecC------CcCCchhHHH-HHHhhhccccE-EEEeecccceeeehhhhhh
Q psy8319 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDS------ECEPGLGASV-MYNLLYNNPQK-LMLLAGCSTVCTTVAEAAK 237 (330)
Q Consensus 166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds------~c~~~~~~t~-~~~~l~~k~~r-i~~i~~cs~~~~~va~~~~ 237 (330)
.-..+.++|++++|++. +.+|.....++ +|++..+++- +-+.+-.+... ..++|..|..+..+++...
T Consensus 13 ~~~~A~~~Av~~~N~~~----~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~~gv~~~AIiGp~ss~~a~~V~si~~ 88 (368)
T cd06383 13 VYKQIIDDALSYINRNI----GTGLSVVHQQVETNAEVNRNDVKVALIEVCDKADSAIVPHLVLDTTTCGDASEIKSVTG 88 (368)
T ss_pred HHHHHHHHHHHHHhcCC----CCceEEEEecccccccccCCcHHHHHHHHHHHHHccCCcEEEECCCcchhHHHHHHHHh
Confidence 34788999999999875 88888888999 9999888887 44554444433 3445754445555778888
Q ss_pred cccceeec---------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecccc
Q psy8319 238 MWNLVVKK---------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITEN 281 (330)
Q Consensus 238 ~w~~~~~~---------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~~ 281 (330)
.+++|..+ .+|+ ++++.+ ..++++++.++.|+.++.++.+...
T Consensus 89 ~~~IP~Is~s~~~~~~~~~p~-~ir~~Ps~~~~~~Ai~dlI~~f~W~~v~iIYddd~g 145 (368)
T cd06383 89 ALGIPTFSASYGQEGDLEQPY-LIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFV 145 (368)
T ss_pred ccCCCEEEccCCCcCcccCce-EEEEeCChHHHHHHHHHHHHHCCCcEEEEEEEcCch
Confidence 88888732 2445 344444 3688999999999999999976543
No 67
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=96.98 E-value=0.0014 Score=64.25 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCc---ceeEEEEEee---CC--cEEEEEEEECCCCceeecCccccC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDR---IALTQIEQVI---NG--SYTKLGFYDTQADNLTWFDRERWI 85 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr---~~~y~I~q~q---~~--~~v~VG~y~~~~~~l~~~~~i~W~ 85 (330)
-+..|.++|+|++|+|.||+|.|++ |-| ....+|.+++ .| .+++||+|+.. +.+.+. -..|+
T Consensus 313 ~G~~l~~~Lknv~~eGlTG~I~F~~-g~R~~~~~~l~I~~L~~~~~G~~~W~kVG~W~~~-~~~~~~-~~~wp 382 (382)
T cd06377 313 SGQYLARFLANTSFDGRTGPVWVTG-SSQVHSSRHFKVWSLRRDPVGQPTWTTVGSWQGG-RKIVMD-QGLWP 382 (382)
T ss_pred chHHHHHHHHhCcccccceeEEEcc-CeeecccceEEEEEeccccCCCccceEEEEecCC-Cceecc-cCCCC
Confidence 5779999999999999999999964 666 3456888887 23 24999999863 334332 23563
No 68
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=96.95 E-value=0.0011 Score=64.51 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=40.3
Q ss_pred HHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CC----cEEEEEEEECC
Q psy8319 23 DDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NG----SYTKLGFYDTQ 72 (330)
Q Consensus 23 ~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~----~~v~VG~y~~~ 72 (330)
..++++|+++.|.|+||+|+||++|.|. -..+|.... +| ..+.||+|++.
T Consensus 304 ~~~~~~~~~~~~~GLTG~i~F~~~g~r~~~~l~i~~~~~~~~~~~~~~~~~~w~~~ 359 (363)
T cd06381 304 LLLLETIKKGPITGLTGKLEFNEGGDNSNVQFEILGTGYSETLGKDGRWLATWNPS 359 (363)
T ss_pred HHHHHHHHhcCccCcceeEEeCCCCCccccEEEEEEeccCCccccceEEeeeccCC
Confidence 3458999999999999999999999985 467888887 33 15778888754
No 69
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=96.93 E-value=0.0016 Score=63.55 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=36.4
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVING 61 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~ 61 (330)
++++.+.|++++|+|++|+|+||++||+...|.+.++++.
T Consensus 322 ~~~l~~~l~~~~f~GvtG~v~fd~~g~~~~~~~v~~~~~~ 361 (382)
T cd06371 322 GANLAQHTRNLEFQGFNQRLRTDSGGGGQAPYVVLDTDGK 361 (382)
T ss_pred HHHHHHHHhCccccccceEEEecCCCCcccceEEEecCCC
Confidence 4688899999999999999999999999999999999853
No 70
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=96.92 E-value=0.0042 Score=59.13 Aligned_cols=127 Identities=14% Similarity=0.080 Sum_probs=83.3
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
||.+.++++..- .+..+..++++|+|+||++-.+ .|.+++++..|++|++..+...+-..+-.....+++++.+|..+
T Consensus 2 IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi-~G~~v~lv~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~~~ 80 (344)
T cd06348 2 LGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGV-NGRPIKLVIEDSGGDEAEAINAFQTLINKDRVLAIIGPTLSQQA 80 (344)
T ss_pred eeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCc-CCcEEEEEEecCCCChHHHHHHHHHHhhhcCceEEECCCCcHHH
Confidence 577777777654 3567788999999999987654 68999999999999998888887776655344444456666554
Q ss_pred eehhhhhhcccceeec----------ccCceEEeeehh-----HHHHHHHHHh-cceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKK----------VEPWKLYTMVTG-----LLSIDLVILL-CWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~----------~~~~~l~~~v~~-----~~~v~li~~~-~W~~v~~~~~~ 278 (330)
..+.......++|... .+++.++..... ..+..++... +|+.+..++..
T Consensus 81 ~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 145 (344)
T cd06348 81 FAADPIAERAGVPVVGPSNTAKGIPEIGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQ 145 (344)
T ss_pred HhhhHHHHhCCCCEEeccCCCCCcCCCCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 4333444455555421 234433332221 1233455566 99999988754
No 71
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=96.92 E-value=0.0048 Score=58.02 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=87.6
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++... .+.....++++|+|.+|++-. ..|.+++++..|++|++..+...+-..+.......++++.||...
T Consensus 2 iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~gg-i~g~~l~~~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~~ 80 (334)
T cd06347 2 IGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGG-VLGKKIELVVEDNKSDKEEAANAATRLIDQDKVVAIIGPVTSGAT 80 (334)
T ss_pred eeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCC-CCCeeEEEEEecCCCChHHHHHHHHHHhcccCeEEEEcCCccHhH
Confidence 466677766443 345567899999999999865 578999999999999999998777666654355555567777666
Q ss_pred eehhhhhhcccceeecc---------cCceEEeeeh-----hHHHHHHH-HHhcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKKV---------EPWKLYTMVT-----GLLSIDLV-ILLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~~---------~~~~l~~~v~-----~~~~v~li-~~~~W~~v~~~~~~~ 279 (330)
..+++.+...++|.... .+...+++.. ...+++.+ ..+.|..++.++...
T Consensus 81 ~~v~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~ 145 (334)
T cd06347 81 LAAGPIAEDAKVPMITPSATNPKVTQGKDYVFRVCFIDPFQGTVMAKFATENLKAKKAAVLYDNS 145 (334)
T ss_pred HHhHHHHHHCCCeEEcCCCCCCCcccCCCeEEEeeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCC
Confidence 66667777777765321 1112444443 23445554 456899999887543
No 72
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.83 E-value=0.0047 Score=59.14 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=85.4
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCC--CCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATD--LLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~--ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+|.+.++++..- .+..+..+.++|+|+||++-. ...|.+++++..|+++++..+...+-..+.......++++.||.
T Consensus 2 IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 81 (347)
T cd06340 2 IGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGATEAERLITEEGVVALVGAYQSA 81 (347)
T ss_pred ceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEecccchH
Confidence 566777766543 356778899999999998865 35799999999999999988887776655553444455576766
Q ss_pred eeeehhhhhhcccceeec-----------ccCceEEeeeh-----hHHHHHHHHHhc------ceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT-----GLLSIDLVILLC------WQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~-----~~~~v~li~~~~------W~~v~~~~~~ 278 (330)
.+..++......++|... .+++ .+++.+ ...+++.+..+. |.++..++.+
T Consensus 82 ~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~-~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 153 (347)
T cd06340 82 VTLAASQVAERYGVPFVVDGAVSDSITERGFKY-TFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHED 153 (347)
T ss_pred hHHHHHHHHHHhCCCEEeccccchHHhhcCCce-EEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecC
Confidence 655555555556666522 1244 344443 245667776664 4788877654
No 73
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=96.75 E-value=0.0077 Score=57.16 Aligned_cols=125 Identities=16% Similarity=0.090 Sum_probs=83.2
Q ss_pred hhhhhhccccc-c-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 151 VGIAFCMSLNF-N-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 151 iG~ll~~~~~~-~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
+|.+++.++.. - .+..+..++++|+|+|| .-..|.+++++..|++++|..+...+-..+......+++++.+|..
T Consensus 2 IG~l~plsG~~~a~~g~~~~~g~~la~~~iN---ggi~G~~v~l~~~D~~~~p~~a~~~~~~l~~~~~V~aviG~~~s~~ 78 (334)
T cd06327 2 IGVLTDMSGVYADAEGKGSVEAAELAVEDFG---GGVLGRPIELVVADHQNKADVAAAKAREWIDRDGVDMIVGGPNSAV 78 (334)
T ss_pred cccccCCCCcCccccCHHHHHHHHHHHHHhc---CCccCeEEEEEEecCCCCchHHHHHHHHHHhhcCceEEECCccHHH
Confidence 57788888776 3 45677889999999999 4456999999999999999999888777666544555555666666
Q ss_pred eeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319 229 CTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 229 ~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
+...+......+++... ..|+.++.... ...+++.+..-.+.+++.++.+
T Consensus 79 ~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 144 (334)
T cd06327 79 ALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTAD 144 (334)
T ss_pred HHHHHHHHHHhCceEEecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 55544455545555421 13453333322 2345554554457888877653
No 74
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=96.74 E-value=0.0027 Score=60.59 Aligned_cols=42 Identities=33% Similarity=0.608 Sum_probs=36.4
Q ss_pred cceEEeeeeeEEEccCCCc-ceeEEEEEeeCCcEEEEEEEECC
Q psy8319 31 STQFTGVSGDVAFSSQGDR-IALTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 31 ~vsF~GisG~V~Fd~nGdr-~~~y~I~q~q~~~~v~VG~y~~~ 72 (330)
+++|.|++|+|+||++|++ ...|++.++.++++++||.|+.+
T Consensus 301 ~~~~~G~~G~v~fd~~~~~~~~~~~~~~~~~~~~~~vg~~~~~ 343 (350)
T cd06366 301 STNFNGLSGPVQFDGGRRLASPAFEIINIIGKGYRKIGFWSSE 343 (350)
T ss_pred eceEEeeeeeEEEcCCCccCCcceEEEEecCCceEEEEEEeCC
Confidence 5799999999999999997 46778888877789999999864
No 75
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.73 E-value=0.0058 Score=57.99 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=84.1
Q ss_pred hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceee
Q psy8319 151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCT 230 (330)
Q Consensus 151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~ 230 (330)
+|.+.++++.-..+....-.+++|+|+||++-. ..|.+++++..|+++++..+...+=..+.......++++.+|..+.
T Consensus 2 iG~~~p~sG~a~~G~~~~~g~~lA~~~iNa~gg-i~G~~ielv~~D~~~~p~~a~~~a~~li~~~~v~aiiG~~~s~~~~ 80 (332)
T cd06344 2 IAVVVPIGKNPNLAEEILRGVAQAQTEINLQGG-INGKLLKVVIANDGNDPEIAKKVADELVKDPEILGVVGHYSSDATL 80 (332)
T ss_pred eEEEEecCCChhhHHHHHHHHHHHHHHHHhcCC-CCCCeEEEEEECCCCChHHHHHHHHHHhcccCceEEEcCCCcHHHH
Confidence 466777776622355566789999999998754 4699999999999999999988776665543444444554444444
Q ss_pred ehhhhhhcccceeec----------ccCceEEeeeh-----hHHHHHHHHHhc-ceEeecceecc
Q psy8319 231 TVAEAAKMWNLVVKK----------VEPWKLYTMVT-----GLLSIDLVILLC-WQFYDPLQRIT 279 (330)
Q Consensus 231 ~va~~~~~w~~~~~~----------~~~~~l~~~v~-----~~~~v~li~~~~-W~~v~~~~~~~ 279 (330)
.++......+++... .+++ .+++.+ ...+++.+.... |+.++.++.+.
T Consensus 81 a~~~~~~~~~ip~i~~~a~~~~lt~~~~~-~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 144 (332)
T cd06344 81 AALDIYQKAKLVLISPTSTSVKLSNPGPY-FFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNST 144 (332)
T ss_pred HHHHHHhhcCceEEccCcCchhhcCCCCc-EEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 444555555665521 2445 344433 356678777766 99998887643
No 76
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=96.71 E-value=0.0062 Score=57.95 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=86.2
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..- .+..+..+.++|+++||++-. ..|.+++++..|+++++..+...+-..+..+....++.+.+|..+
T Consensus 2 iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gg-i~G~~v~~~~~D~~~~~~~a~~~a~~li~~~~v~aiig~~~s~~~ 80 (346)
T cd06330 2 IGVITFLSGRAAIFGEPARNGAELAVEEINAAGG-IGGRKIELVVRDEAGKPDEAIREARELVENEGVDMLIGLISSGVA 80 (346)
T ss_pred eeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCC-cCCeEEEEEEecCCCCHHHHHHHHHHHHhccCCcEEEcccchHHH
Confidence 566777776653 345678899999999998854 568999999999999998888888777765333334456566555
Q ss_pred eehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhc--ceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLC--WQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~--W~~v~~~~~~ 278 (330)
..++......++|... .+++ ++++.+ ...+++.+.... |+.+..++..
T Consensus 81 ~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 147 (346)
T cd06330 81 LAVAPVAEELKVFFIATDPGTPRLTEEPDNPY-VFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPD 147 (346)
T ss_pred HHHHHHHHHcCCeEEEcCCCCcccccCCCCCc-eEEecCChHHHHHHHHHHHHHhCcCccEEEEECCc
Confidence 5556666666666521 1234 333333 345667777764 9999988754
No 77
>KOG1056|consensus
Probab=96.65 E-value=0.0056 Score=65.08 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=96.9
Q ss_pred ecCCccchhhhhhhhhhhcccccc-----------cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHH
Q psy8319 139 ASSHPVCNTIMLVGIAFCMSLNFN-----------LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASV 207 (330)
Q Consensus 139 k~Ss~~l~~~iliG~ll~~~~~~~-----------~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~ 207 (330)
+..+..+.--+.+|++++.-..-. .+..|.-++..|+|.||+ +++++|.+|-+...||--.+..++..
T Consensus 22 ~~~~~~~~gdi~lgglFpvh~k~~~~~~cg~~~~~~gi~r~eAml~al~~iN~-~~lLp~~kLG~~i~DTCs~~t~aleq 100 (878)
T KOG1056|consen 22 LRVVARIPGDIILGGLFPVHEKGGGAPQCGRIREPRGIQRLEAMLFALDEINN-PDLLPNIKLGARILDTCSRSTYALEQ 100 (878)
T ss_pred ceeeccCCCCeEEcceeeecccCCCCCcccccccchhHHHHHHHHHHHHHhcC-cccCCCceeeeeEeeccCCcHHHHHh
Confidence 344455556677888877643222 256778899999999999 99999999999999998888777766
Q ss_pred HHHhhhc---c------------ccEEEEe-ecccceeeehhhhhhccccee------------ecccCceEEeeeh---
Q psy8319 208 MYNLLYN---N------------PQKLMLL-AGCSTVCTTVAEAAKMWNLVV------------KKVEPWKLYTMVT--- 256 (330)
Q Consensus 208 ~~~~l~~---k------------~~ri~~i-~~cs~~~~~va~~~~~w~~~~------------~~~~~~~l~~~v~--- 256 (330)
.++.+.. + +.-+..+ ++.|+++-.++..-+-.++|+ |..++++.+++.+
T Consensus 101 sl~Fv~~~~~~~~~e~~c~~g~sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQisyaSts~~LSdk~ry~~F~RtVP~D~~ 180 (878)
T KOG1056|consen 101 SLSFVRASLTSDDSEVRCPDGYSPPVVAVIGPSYSSVSIAVANLLRLFLIPQISYASTSPDLSDKTRYDYFLRTVPSDVF 180 (878)
T ss_pred hHHHHHhcccCCCcceecCCCCCCceeEEeCCCCchHHHHHHHHHHhhcCceeccccCCcccccchhhhceeeecCChHH
Confidence 6554432 2 1122233 555555444555555556665 4567775555544
Q ss_pred -hHHHHHHHHHhcceEeecceeccc
Q psy8319 257 -GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 257 -~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
+.+.+++++.++|+.|..++.+.+
T Consensus 181 Qa~Am~~il~~f~W~yVstv~s~~d 205 (878)
T KOG1056|consen 181 QAQAMVDILKKFNWNYVSTVASEGD 205 (878)
T ss_pred HHHHHHHHHHHhCeeEeeehhcCcc
Confidence 468899999999999998876554
No 78
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=96.64 E-value=0.01 Score=56.37 Aligned_cols=127 Identities=19% Similarity=0.157 Sum_probs=85.6
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..- .+..+..++++|++.+|++-.+ .|.+++++..|++|++..+...+-..+..+...+++.+.||..+
T Consensus 2 IG~~~plsG~~a~~G~~~~~g~~~a~~~iN~~ggi-~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~V~~i~G~~~s~~~ 80 (340)
T cd06349 2 IGVAGPLTGDNAQYGTQWKRAFDLALDEINAAGGV-GGRPLNIVFEDSKSDPRQAVTIAQKFVADPRIVAVLGDFSSGVS 80 (340)
T ss_pred eeEEecCCCcchhcCccHHHHHHHHHHHHHhhCCc-CCeEEEEEEeCCCCChHHHHHHHHHHhccCCeEEEECCCccHhH
Confidence 577777777653 4677888999999999998666 79999999999999999998877777665555444455566555
Q ss_pred eehhhhhhcccceeec----------ccCceEEeeeh-----hHHHHHHH-HHhcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKK----------VEPWKLYTMVT-----GLLSIDLV-ILLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~----------~~~~~l~~~v~-----~~~~v~li-~~~~W~~v~~~~~~~ 279 (330)
..++......+++... ..++ +++..+ ...+++.+ ....|..++.++...
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~ 145 (340)
T cd06349 81 MAASPIYQRAGLVQLSPTNSHPDFTKGGDF-IFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNT 145 (340)
T ss_pred HHhHHHHHhCCCeEEecCCCCCccccCCCe-EEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 4444454444554311 1333 344433 12345553 456899998887654
No 79
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.53 E-value=0.016 Score=55.44 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=85.5
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCC-CC--ceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLL-PG--FKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll-~g--f~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
||.+.++++..- .+..+.-+.++|++++|++-.+. .| ++++++..|++|++..+...+=..+...-..+.+++.||
T Consensus 2 IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s 81 (347)
T cd06336 2 IGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAAANARRLVQQDGVKFILGPIGG 81 (347)
T ss_pred cceeccCcCcccccChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEeCCCC
Confidence 577777777553 35567889999999999886665 34 689999999999999998887777766344555566666
Q ss_pred ceeeehhhhhhcccceeec-----------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 227 TVCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..+.. +......++|... ..++ .+++.+ .....+.+....|.+++.++.+.
T Consensus 82 ~~~~~-~~~~~~~~ip~i~~~~~~~~~~~~~~~~-~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~ 148 (347)
T cd06336 82 GITAA-QQITERNKVLLLTAYSSDLSIDTAGNPL-TFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPND 148 (347)
T ss_pred chhhh-hhhhhhcCceEEeccCCcccccccCCce-EEEecCCchhHHHHHHHHHhhcCCceEEEEccCC
Confidence 55544 4555555555421 1233 344333 24455666557899999987653
No 80
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=96.39 E-value=0.019 Score=53.63 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCceEEEEeecCC-cCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec-
Q psy8319 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSE-CEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK- 245 (330)
Q Consensus 168 ~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~- 245 (330)
..+.++|++.+|.....++++.+++...+.. .++..+...+=..+..+...++++|.||..+..++..+..+++|...
T Consensus 14 ~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~ 93 (328)
T cd06351 14 ELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISI 93 (328)
T ss_pred HHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHHHHHHHHhccCcEEEECCCCHHHHHHHHHHhccCCCCeEEe
Confidence 5788999999999888877777777666555 45555544443444344444455588877776667778888887621
Q ss_pred -----------ccCceEEeeeh----hHHHHHHHHHhcceEeecceeccc
Q psy8319 246 -----------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 246 -----------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
.+++.++.... +.++++++.++.|..++.++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~~~~ 143 (328)
T cd06351 94 SGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYDSDE 143 (328)
T ss_pred ecCcccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEeCch
Confidence 23443333333 467889999999999999987654
No 81
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=96.36 E-value=0.018 Score=54.90 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=82.7
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..- .+..+..++++|+++||++-.+ .|.+++++..|+++++..+...+-..+..| ...++++.+|..+
T Consensus 2 IG~l~p~sG~~a~~G~~~~~g~~~a~~~iN~~GGi-~G~~i~l~~~D~~~~p~~a~~~a~~lv~~~-v~aiiG~~~s~~~ 79 (342)
T cd06329 2 IGVIDPLSGPFASLGELVRRGLQLAADEINAKGGV-DGRPIELVEEDNKGSPQEALRKAQKAIDDG-VRLVVQGNSSSVA 79 (342)
T ss_pred eeeeccCCCCcccccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEeccCCCChHHHHHHHHHHHHhC-CeEEEcccchHHH
Confidence 577777776543 3567788999999999986443 589999999999999998887776666543 3344456666555
Q ss_pred eeh-------hhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhc-ceEeecceec
Q psy8319 230 TTV-------AEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLC-WQFYDPLQRI 278 (330)
Q Consensus 230 ~~v-------a~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~-W~~v~~~~~~ 278 (330)
..+ +.....++++... ..++ .+++.+ ...+++.+.... |+++..++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~-~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~ 152 (342)
T cd06329 80 LALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSFW-HFRTDANTDMKMEALASYIKKQPDGKKVYLINQD 152 (342)
T ss_pred HHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcce-EEEecCChHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 444 2333445555421 1234 334433 345667776665 9999988754
No 82
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=96.11 E-value=0.0062 Score=57.64 Aligned_cols=37 Identities=22% Similarity=0.539 Sum_probs=32.1
Q ss_pred eeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECC
Q psy8319 36 GVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 36 GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~ 72 (330)
|+||+|+||++|||.. .++|.+.+++.+++||.|+..
T Consensus 286 g~tG~v~f~~~g~r~~~~~~~~~~~~~~~~~vg~w~~~ 323 (327)
T cd06382 286 GLTGRIEFDSSGQRSNFTLDVIELTESGLRKVGTWNSS 323 (327)
T ss_pred ecccceeeCCCCCEeeeEEEEEeccccCceEEEEECCC
Confidence 9999999999999854 578888887789999999853
No 83
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=95.88 E-value=0.026 Score=54.87 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=83.8
Q ss_pred chHHHHHHHHHhhhcCCCCCCCceEEE----------EeecCCcCC--chhHHHHHHhhhc-cccEEEEeecccceeeeh
Q psy8319 166 ACEPAAKLALEDVNNATDLLPGFKLQL----------HWNDSECEP--GLGASVMYNLLYN-NPQKLMLLAGCSTVCTTV 232 (330)
Q Consensus 166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l----------~~~ds~c~~--~~~~t~~~~~l~~-k~~ri~~i~~cs~~~~~v 232 (330)
...++++.|++.++++- ...|.+.++ +++++.|.. +.|..+.....-. +.-.++++|.|.++++++
T Consensus 19 ~v~~av~~a~~~~~~~~-~~~g~~f~~~a~~~~~~~~~y~~~~C~sstceg~~~l~~l~~~~~~gcv~lGP~CtYat~~~ 97 (380)
T cd06369 19 FVKEAVEEAIEIVAERL-AEAGLNVTVNANFEGFNTSLYRSRGCRSSTCEGVELLKKLSVTGRLGCVLLGPSCTYATFQM 97 (380)
T ss_pred HHHHHHHHHHHHHHhhh-hccCceEEEEEeeeccccceeccCCCCcccchHHHHHHHHHhcCccCcEEEcCccceehhhh
Confidence 45789999999998764 667888788 888999975 7888888776643 345667789999999999
Q ss_pred hhhhhcccceeecc--------cCceEEeeeh-----hHHHHHHH------HHhcceEeecceecc
Q psy8319 233 AEAAKMWNLVVKKV--------EPWKLYTMVT-----GLLSIDLV------ILLCWQFYDPLQRIT 279 (330)
Q Consensus 233 a~~~~~w~~~~~~~--------~~~~l~~~v~-----~~~~v~li------~~~~W~~v~~~~~~~ 279 (330)
++.+.+|++|..+- +..++.|+++ +.+.+++. .+..|+..- ++.+.
T Consensus 98 ~~~~~~~~~P~ISaGsfglscd~k~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~~ay-vyk~~ 162 (380)
T cd06369 98 VDDEFNLSLPIISAGSFGLSCDYKENLTRLLPPARKISDFFVDFWKEKNFPKKPKWETAY-VYKKQ 162 (380)
T ss_pred hhhhhcCCCceEeccccccCCCchhhhhhcCchHHHHHHHHHHHHhcccccCCCCCceeE-EEcCC
Confidence 99999999998431 2223666665 46778888 588997544 55543
No 84
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=95.70 E-value=0.05 Score=50.90 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=79.3
Q ss_pred hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++.... +.....++++|+++||+ ....|.+++++..|+++++..+...+-..+..+....++++.+|...
T Consensus 2 IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~--ggi~g~~i~l~~~d~~~~~~~a~~~~~~li~~~~v~~vig~~~s~~~ 79 (312)
T cd06333 2 IGAILSLTGPAASLGIPEKKTLELLPDEINA--GGIGGEKVELIVLDDGSDPTKAVTNARKLIEEDKVDAIIGPSTTPAT 79 (312)
T ss_pred eeEEeecCCcchhhCHHHHHHHHHHHHHHhc--CCcCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCeEEEECCCCCHHH
Confidence 5666777665432 45567799999999998 56679999999999999998887666554443344444455554433
Q ss_pred eehhhhhhcccceeecc----------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKKV----------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~~----------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
....+.....++|.... .++ .+++.. ...+++.+...+|++++.+...
T Consensus 80 ~~~~~~~~~~~vP~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~ 142 (312)
T cd06333 80 MAVAPVAEEAKTPMISLAPAAAIVEPKRKW-VFKTPQNDRLMAEAILADMKKRGVKTVAFIGFS 142 (312)
T ss_pred HHHHHHHHhcCCCEEEccCCccccCCCCCc-EEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 33334444455554211 223 233322 2355666777899999988654
No 85
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=95.49 E-value=0.056 Score=51.23 Aligned_cols=124 Identities=12% Similarity=0.051 Sum_probs=79.8
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.+.++... .+..+.-++++|+|++|.. ..|.+++++..|+++++..+...+-..+...-...++++.+|..+
T Consensus 2 IG~~~plsG~~a~~g~~~~~g~~lAv~~ingg---i~G~~i~l~~~D~~~~p~~a~~~~~~lv~~~~v~~viG~~~s~~~ 78 (333)
T cd06359 2 IGFITTLSGPAAALGQDMRDGFQLALKQLGGK---LGGLPVEVVVEDDGLKPDVAKQAAERLIKRDKVDFVTGVVFSNVL 78 (333)
T ss_pred eEEEEecccchhhhhHHHHHHHHHHHHHhCCc---cCCEEEEEEecCCCCChHHHHHHHHHHHhhcCCcEEEccCCcHHH
Confidence 466666666443 2456788999999999832 458999999999999998888777666554334444456555554
Q ss_pred eehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
..++......++|... ..++. +++.. ...+.+.+...+|++++.++.+
T Consensus 79 ~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~ 143 (333)
T cd06359 79 LAVVPPVLESGTFYISTNAGPSQLAGKQCSPYF-FSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPN 143 (333)
T ss_pred HHHHHHHHHcCCeEEecCCCccccccccCCCcE-EEeeCChHhhHHHHHHHHHHhCCCeEEEEecC
Confidence 4444444455555421 13443 33333 2455566666789999988754
No 86
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=95.08 E-value=0.12 Score=48.75 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=78.8
Q ss_pred hhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 150 LVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 150 liG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
.+|.+.++++..- .+....-++++|+|.||++-. ..|+.+++...|+++++..+....=..+-......++++.+|..
T Consensus 2 ~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~gg-i~G~~v~l~~~D~~~d~~~~~~~~~~l~~~~~v~avig~~~s~~ 80 (336)
T cd06326 2 VLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGG-VNGRKIELVTLDDGYEPERTVANTRKLIEDDKVFALFGYVGTPT 80 (336)
T ss_pred EEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCC-cCCceEEEEEeCCCCChHHHHHHHHHHHhhcCcEEEEeCCCchh
Confidence 4677778877654 245567889999999998854 47999999999999999887655544433223443444434332
Q ss_pred eeehhhhhhcccceeecc-----------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 229 CTTVAEAAKMWNLVVKKV-----------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 229 ~~~va~~~~~w~~~~~~~-----------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
...+.......++|.... .++ .+++.. ...+++.+...+|++++.++..
T Consensus 81 ~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~ 145 (336)
T cd06326 81 TAAALPLLEEAGVPLVGPFTGASSLRDPPDRN-VFNVRASYADEIAAIVRHLVTLGLKRIAVFYQD 145 (336)
T ss_pred HHHHHHHHHHcCCeEEEecCCcHHhcCCCCCc-eEEeCCChHHHHHHHHHHHHHhCCceEEEEEec
Confidence 222233333444444221 233 333332 2456677777899999888654
No 87
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=94.98 E-value=0.13 Score=48.70 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=79.0
Q ss_pred hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.++++++.... +....-..++|+++||++-.+ .|.+++++..|++++|..+...+=..+...-..+.+++.+|..+
T Consensus 2 IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi-~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~ 80 (333)
T cd06331 2 IGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGI-LGRPLELVVEDPASDPAFAAKAARRLIRDDKVDAVFGCYTSASR 80 (333)
T ss_pred eEEEecCCCccccccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEECCCCCHHHHHHHHHHHHhccCCcEEEecccHHHH
Confidence 5777788766542 455667899999999988554 68999999999999998888777555544234444456555544
Q ss_pred eehhhhhhcccceeec--------ccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKK--------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~--------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
..++.....-++|... ..++.++.... ...+++.+..-.|.+++.++.+
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d 141 (333)
T cd06331 81 KAVLPVVERGRGLLFYPTQYEGGECSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSD 141 (333)
T ss_pred HHHHHHHHhcCceEEeCCCCCCCcCCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCC
Confidence 4444443333333311 23443332221 2345555544459999888754
No 88
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=94.93 E-value=0.13 Score=49.35 Aligned_cols=127 Identities=19% Similarity=0.117 Sum_probs=76.4
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..- .+..+.-+++||+|+||++=.+. |.+++++..|++++|..+...+=..+..+.....+++-+|..+
T Consensus 2 IG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GGi~-G~~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~iiG~~~S~~~ 80 (348)
T cd06355 2 VGILHSLSGTMAISETTLKDAELLAIEEINAAGGVL-GRKIEAVVEDGASDWPTFAEKARKLLTQDKVAAVFGCWTSASR 80 (348)
T ss_pred eEEEEcCCCcccccchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHHhCCCcEEEeccchhhH
Confidence 566777766553 35567889999999999886654 8999999999999998888777666655444444444444333
Q ss_pred eehhhhhhcccceee--------cccCceEEeeeh----hHHHHHHHHH-hcceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVK--------KVEPWKLYTMVT----GLLSIDLVIL-LCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~--------~~~~~~l~~~v~----~~~~v~li~~-~~W~~v~~~~~~ 278 (330)
..+.......+++.. ...|+.++.... ....++.+.. ..+++++.++.+
T Consensus 81 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~~d 142 (348)
T cd06355 81 KAVLPVFERHNGLLFYPVQYEGLEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVGSD 142 (348)
T ss_pred HHHHHHHhccCCceecCCCccCCCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEECCc
Confidence 222222222222221 123443332222 1234454443 358888887654
No 89
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=94.90 E-value=0.12 Score=49.05 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=58.4
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
||.+.+.++..- .+..+.-++++|+|++|+.-.-..|.+++++..|++|+|..+....-..+-......++++.||..+
T Consensus 2 IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~ggi~G~~i~lv~~D~~~~p~~a~~~~~~li~~~~V~avvG~~~S~~~ 81 (333)
T cd06328 2 IGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQVDGRPIEVIVKDDAGNPEVAVSLARELIGDDGVDILVGSTSSGVA 81 (333)
T ss_pred eEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCCcCCEEEEEEEecCCCChHHHHHHHHHHHHhcCCeEEEccCCcHHH
Confidence 455555555443 2467788999999999876666779999999999999999998777666665344444456666554
Q ss_pred ee
Q psy8319 230 TT 231 (330)
Q Consensus 230 ~~ 231 (330)
..
T Consensus 82 ~a 83 (333)
T cd06328 82 LA 83 (333)
T ss_pred HH
Confidence 43
No 90
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=94.85 E-value=0.038 Score=51.93 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcceEEeeeeeEEEcc-CCCcc
Q psy8319 19 KEIADDIYAAINSTQFTGVSGDVAFSS-QGDRI 50 (330)
Q Consensus 19 ~~~~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~ 50 (330)
...+.++.++|++++|+|++|+|+||+ +|||.
T Consensus 306 ~~~g~~l~~~l~~~~f~G~tG~v~f~~~~G~~~ 338 (348)
T PF01094_consen 306 WQNGSQLLKYLRNVSFEGLTGRVSFDSNDGDRT 338 (348)
T ss_dssp STTHHHHHHHHHTEEEEETTEEEEEETTTSBEE
T ss_pred cccHHHHHHHHhheeeeCCCCCEEEeCCCCCcC
Confidence 446778999999999999999999999 88983
No 91
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=94.69 E-value=0.041 Score=52.98 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=31.5
Q ss_pred eeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECC
Q psy8319 36 GVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 36 GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~ 72 (330)
|+||+|+||++|-|.. .-+|.++..+..++||.|++.
T Consensus 291 glTg~i~f~~~g~R~~~~l~v~~l~~~g~~kig~W~~~ 328 (333)
T cd06394 291 GLTGRIEFNSKGQRSNYTLKILQKTRSGFRQIGQWHSN 328 (333)
T ss_pred eeecceecCCCCcCcccEEEEEEecCCcceEEEEEeCC
Confidence 9999999999999864 558888886678999999864
No 92
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=94.66 E-value=0.21 Score=47.65 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=78.5
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
||.+.++++..- .+.....++++|+|++|++-.+ .|..++++..|+++++..+...+-..+........+++.+|...
T Consensus 2 IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi-~G~~i~lv~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~ 80 (347)
T cd06335 2 IGVDADFSGGSAPSGVSIRRGARLAIDEINAAGGV-LGRKLELVERDDRGNPARGLQNAQELAADEKVVAVLGGLHTPVA 80 (347)
T ss_pred eeeecCccCccccccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEeccCCCCcHHHHHHHHHHhccCCeEEEEcCCCCHHH
Confidence 577777777543 2455678899999999988543 68999999999999999988887666654333333344334333
Q ss_pred eehhhhhhcccceeec-------------ccCceEEeeeh-----hHHHHHHHH-HhcceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKK-------------VEPWKLYTMVT-----GLLSIDLVI-LLCWQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~-------------~~~~~l~~~v~-----~~~~v~li~-~~~W~~v~~~~~~~ 279 (330)
..+......-++|... ..++ .+++.. ...+++.+. ...|.+++.++.+.
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~-~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~ 148 (347)
T cd06335 81 LANLEFIQQNKIPLIGPWAAGTPITRNGAPPNY-IFRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNT 148 (347)
T ss_pred HhhhHHHHhcCCcEEecCCCCcccccCCCCCCC-EEEeccChHHHHHHHHHHHHHhcCCCeEEEEeccC
Confidence 3333333333343311 1234 334433 224555543 44599999998754
No 93
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=94.65 E-value=0.16 Score=48.64 Aligned_cols=129 Identities=12% Similarity=0.001 Sum_probs=84.2
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+-+|.+.++++... .+....-..++|++.+|++-.+ .|.+++++..|+++++..+...+-..+.......++.+.+|.
T Consensus 7 i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gGi-~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~v~avvG~~~s~ 85 (362)
T cd06343 7 IKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGGI-NGRKIELIVEDDGYSPPKTVEQTRKLVESDEVFAMVGGLGTP 85 (362)
T ss_pred EEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCCc-CCeEEEEEEecCCCChHHHHHHHHHHHhhcCeEEEEecCCcH
Confidence 57888888887665 3566677889999999987554 689999999999999988887777766544444444454444
Q ss_pred eeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHH-HHHhcceEeecceecc
Q psy8319 228 VCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDL-VILLCWQFYDPLQRIT 279 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~l-i~~~~W~~v~~~~~~~ 279 (330)
.+.........-++|... .+++.+ ++.+ ...+++. ....+|.+++.++...
T Consensus 86 ~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~ 154 (362)
T cd06343 86 TNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTF-GWQPSYQDEARIYAKYLVEEKPNAKIAVLYQND 154 (362)
T ss_pred HHHHhHHHHHhcCCceEecccccHhhhCCCCCCceE-ecCCChHHHHHHHHHHHHHhCCCceEEEEEecc
Confidence 433333444444444311 244533 3333 2355563 4567899999987643
No 94
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=94.54 E-value=0.058 Score=51.16 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=78.3
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..- .+.....++++|+++||+.-.+ .|++++++..|++|++..+...+=..+...-...++++.||..+
T Consensus 2 IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi-~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~v~aviG~~~s~~a 80 (333)
T cd06358 2 IGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGGI-LGREVELVIVDDGSPPAEAAAAAARLVDEGGVDAIIGWHTSAVR 80 (333)
T ss_pred eEEEecCcCchhhcchhHHHHHHHHHHHHHhcCCc-CCcEEEEEEECCCCChHHHHHHHHHHHHhCCCcEEEecCcHHHH
Confidence 566777766543 2444567889999999987554 68999999999999999999877666655344445557666665
Q ss_pred eehhhhhhcccceeec--------ccCceEEeeeh-----hHHHHHH-HHHhcceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKK--------VEPWKLYTMVT-----GLLSIDL-VILLCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~--------~~~~~l~~~v~-----~~~~v~l-i~~~~W~~v~~~~~~ 278 (330)
..+..... .++|... ..++ .+++.. ....++. .....|.+++.++.+
T Consensus 81 ~a~~~~~~-~~vp~i~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~~ 141 (333)
T cd06358 81 NAVAPVVA-GRVPYVYTSLYEGGECNPG-VFLTGETPEQQLAPAIPWLAEEKGARRWYLIGND 141 (333)
T ss_pred HHHHHHHh-cCceEEeCCCcCCCCCCCC-EEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 54444433 4444421 1344 333332 1123332 334578888877654
No 95
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=94.54 E-value=0.21 Score=48.10 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=78.5
Q ss_pred hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+.++++..-. +..+.-+.++|+|+||+.=.+ .|.+++++..|++++|..+...+=.++-..... ++++.+|..+
T Consensus 2 IG~~~plsG~~a~~G~~~~~g~~la~~~iNa~GGI-~Gr~ielv~~D~~~~p~~a~~~a~~Li~~~~V~-~i~~~~S~~~ 79 (351)
T cd06334 2 VGLLADRTGPTAFVGIPYAAGFADYFKYINEDGGI-NGVKLEWEECDTGYEVPRGVECYERLKGEDGAV-AFQGWSTGIT 79 (351)
T ss_pred CCccccCCCcccccChhHHHHHHHHHHHHHHcCCc-CCeEEEEEEecCCCCcHHHHHHHHHHhccCCcE-EEecCcHHHH
Confidence 5777778775543 566788899999999988554 699999999999999999887765554442332 3344344444
Q ss_pred eehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhc-----ceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLC-----WQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~-----W~~v~~~~~~~ 279 (330)
..+.......++|.. ..+++ .+++.+ ...+++.+..-. .++++.++.+.
T Consensus 80 ~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~-~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~ 150 (351)
T cd06334 80 EALIPKIAADKIPLMSGSYGATLADDGAVFPY-NFPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDS 150 (351)
T ss_pred HHhhHHHhhcCCcEEecccchhhccCCCCCCe-eeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCC
Confidence 444444444555542 11344 344433 234555555444 47777776643
No 96
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=94.50 E-value=0.23 Score=48.03 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=68.4
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCC-----CceEEEEeecCCcCCchhHHHHHHhhhccccEEEEe-
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLP-----GFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLL- 222 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~-----gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i- 222 (330)
+-+|++++. ..+.-+.++|+|.+|++..... |.++++ .+++......+...+..+-....++
T Consensus 20 i~IG~i~~~-------~~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~-----~~~~~~~a~~~~~~Li~~~V~aii~~ 87 (377)
T cd06379 20 VNIGAVLSN-------KKHEQEFKEAVNAANVERHGSRKIKLNATTITH-----DPNPIQTALSVCEQLISNQVYAVIVS 87 (377)
T ss_pred EEEeEEecc-------hhHHHHHHHHHHHHhhhhcCCcceeeccceEee-----cCChhhHHHHHHHHHhhcceEEEEEe
Confidence 445766651 3567899999999998654333 333444 2455443333333333332222222
Q ss_pred ecccce----eeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319 223 AGCSTV----CTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 223 ~~cs~~----~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
+.||+. +..++..+..|++|+.. .+++ ++++.+ +.++++++.++.|+.++.++++..
T Consensus 88 ~~~ss~~~~~~~~v~~~~~~~~iP~Is~~a~~~~ls~~~~~~~-~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~ 165 (377)
T cd06379 88 HPPTSNDHLTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLS-FLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDH 165 (377)
T ss_pred CCCCCcccccHHHHHHHhhCCCCcEEecccCCccccCcccccc-EEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCc
Confidence 343432 22345556677887621 2455 444443 457889999999999999988653
No 97
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=94.50 E-value=0.29 Score=44.29 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=81.1
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.+++.++... .+....-++++|++++|++- ...|.++++...|+++++..+...+-..+.. ....++++.|+...
T Consensus 2 ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~g-g~~g~~v~~~~~d~~~~~~~~~~~~~~l~~~-~v~~iig~~~~~~~ 79 (298)
T cd06268 2 IGVLLPLSGPLAALGEPVRNGAELAVEEINAAG-GILGRKIELVVEDTQGDPEAAAAAARELVDD-GVDAVIGPLSSGVA 79 (298)
T ss_pred eeeeecCcCchhhcChhHHHHHHHHHHHHHhcC-CCCCeEEEEEEecCCCCHHHHHHHHHHHHhC-CceEEEcCCcchhH
Confidence 456666654222 23456778899999999885 4578999999999999988777666555544 33444456555444
Q ss_pred eehhhhhhcccceeecc-----------cCceEEeeeh-----hHHHHHHHHHhc-ceEeecceecc
Q psy8319 230 TTVAEAAKMWNLVVKKV-----------EPWKLYTMVT-----GLLSIDLVILLC-WQFYDPLQRIT 279 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~~-----------~~~~l~~~v~-----~~~~v~li~~~~-W~~v~~~~~~~ 279 (330)
..+.+....+++|.... .++ .+.+.+ ...+++.+.... |.+++.++...
T Consensus 80 ~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 145 (298)
T cd06268 80 LAAAPVAEEAGVPLISPGATSPALTGKGNPY-VFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDY 145 (298)
T ss_pred HhhHHHHHhCCCcEEccCCCCcccccCCCce-EEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCC
Confidence 44555666677765221 223 333332 346677777777 99999887643
No 98
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=94.21 E-value=0.22 Score=48.32 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=81.9
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.||.+.++++..- .+.......++|+|+||+.-.+ .|.+++++..|++.+|..+....=..+ ..-...++.+.+|.
T Consensus 26 I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GGi-~G~~ielv~~D~~~~p~~a~~~~~~Li-~~~V~~iiG~~~s~ 103 (369)
T PRK15404 26 IKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGI-KGDKLEGVEYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSS 103 (369)
T ss_pred eEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCCCHHHHHHHHHHHH-hCCceEEEcCCCch
Confidence 68899998887654 3556788899999999987554 589999999999999988776554444 44333333444444
Q ss_pred eeeehhhhhhcccceeec-----------ccCceEEeeehh-----HHHHHH-HHHhcceEeecceecc
Q psy8319 228 VCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVTG-----LLSIDL-VILLCWQFYDPLQRIT 279 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~~-----~~~v~l-i~~~~W~~v~~~~~~~ 279 (330)
.+..++......+++... -+++ ++++... ..+++. .....|..++.++++.
T Consensus 104 ~~~a~~~~~~~~~ip~i~~~s~~~~l~~~~~~~-~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i~~d~ 171 (369)
T PRK15404 104 STQPASDIYEDEGILMITPAATAPELTARGYQL-IFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDKQ 171 (369)
T ss_pred hHHHhHHHHHHCCCeEEecCCCCHHHhcCCCce-EEeCCCCcHHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 444444555445554421 1233 4444321 234443 3445889998887753
No 99
>KOG1054|consensus
Probab=94.12 E-value=0.07 Score=54.23 Aligned_cols=51 Identities=24% Similarity=0.470 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEEC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDT 71 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~ 71 (330)
-+.++-+.+++|.++|.||+++||..|.|.. ..+|+.+..+...++|.|+.
T Consensus 343 qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e 394 (897)
T KOG1054|consen 343 QGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGSRKVGYWNE 394 (897)
T ss_pred cchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCcceeeeecc
Confidence 4567788999999999999999999988753 34566666555678888864
No 100
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=93.91 E-value=0.12 Score=50.24 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=87.4
Q ss_pred hhhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 148 IMLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 148 ~iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
.|.+|.+.++++..- ++..-.-.+++|+|+||+.-. ..|..++++..|.+|++..+...+=..+..+-...++++-||
T Consensus 10 ~IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Gg-i~G~~velv~~D~~~dp~~a~~~A~~li~~~~V~~vvG~~~S 88 (366)
T COG0683 10 TIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGG-ILGRKVELVVEDDASDPATAAAVARKLITQDGVDAVVGPTTS 88 (366)
T ss_pred ceEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCC-cCCceEEEEEecCCCChHHHHHHHHHHHhhcCceEEEEeccC
Confidence 467888888877654 355556788999999998877 456569999999999999999998887776777777778888
Q ss_pred ceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHH-HhcceEeecceec
Q psy8319 227 TVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVI-LLCWQFYDPLQRI 278 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~-~~~W~~v~~~~~~ 278 (330)
.++..+......-+++.. ...++ .+++.+ ...+++.+. .....++..++..
T Consensus 89 ~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~-vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~~~ 157 (366)
T COG0683 89 GVALAASPVAEEAGVPLISPSATAPQLTGRGLKPN-VFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDD 157 (366)
T ss_pred cccccchhhHhhcCceEEeecCCCCcccccccccc-eEEecCChHHHHHHHHHHHHHhcCCcEEEEEeCC
Confidence 777665554444333331 11222 555554 233444443 5555567776653
No 101
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=93.22 E-value=0.11 Score=50.56 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=60.2
Q ss_pred hhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 150 LVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 150 liG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
.||.+.++++..- .+..+.-.+++|+|.||++-.+ .|.+++++..|++++|..+...+=..+......+++++.+|..
T Consensus 2 kIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GGi-~Gr~ielv~~D~~~~p~~a~~~a~~li~~d~v~~viG~~~S~~ 80 (374)
T TIGR03669 2 KLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGGI-LGRQIELIDPDPQSDNERYQELTRRLLNRDKVDALWAGYSSAT 80 (374)
T ss_pred EEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCCC-CCceeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEcCCchHH
Confidence 4677777777654 3556778899999999988665 4899999999999999988877766665444444445555554
Q ss_pred eeehh
Q psy8319 229 CTTVA 233 (330)
Q Consensus 229 ~~~va 233 (330)
+..+.
T Consensus 81 ~~A~~ 85 (374)
T TIGR03669 81 REAIR 85 (374)
T ss_pred HHHHH
Confidence 43333
No 102
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=93.09 E-value=0.48 Score=44.54 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=78.3
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
||.++++++.+. .+..+.-++++|++++|. -..|..++++..|+++++..+...+-..+.....+..+++.+|...
T Consensus 2 IG~l~p~sG~~a~~g~~~~~g~~~a~~~~~~---~i~G~~i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~iig~~~s~~~ 78 (336)
T cd06360 2 VGLLLPYSGTYAALGEDITRGFELALQEAGG---KLGGREVEFVVEDDEAKPDVAVEKARKLIEQDKVDVVVGPVHSGEA 78 (336)
T ss_pred eEEEEecccchHhhcHhHHHHHHHHHHHhCC---CcCCEEEEEEEcCCCCChHHHHHHHHHHHHHhCCcEEEccCccHhH
Confidence 466677655443 234567788999999863 2469999999999999998887666555554455555556555443
Q ss_pred eehhhhhhcccceeec-------c-----cCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKK-------V-----EPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~-------~-----~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
..........++|... + +|+.++.... ...+.+.+...+|+.++.++.+
T Consensus 79 ~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~~ 143 (336)
T cd06360 79 LAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAWD 143 (336)
T ss_pred HHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 3323333334454421 1 2554433333 3456777777789999988654
No 103
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=92.84 E-value=0.53 Score=44.07 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=77.1
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
||.+++.++... .+.....++++|++.+|. ...|.++++++.|+++++..+...+=..+..+....++++.||...
T Consensus 2 IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~~---~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~ 78 (333)
T cd06332 2 IGLLTTLSGPYAALGQDIRDGFELALKQLGG---KLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNVA 78 (333)
T ss_pred eEEEeeccCchHhhhHHHHHHHHHHHHHhCC---CcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHHH
Confidence 466666655443 234567889999999983 3568999999999999998877655444444244444455555443
Q ss_pred eehhhhhhcccceeecc------------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKKV------------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~~------------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
..........++|.... .|+ .+++.+ ...+++.+...+|++++.+...
T Consensus 79 ~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~ 143 (333)
T cd06332 79 LAVVPSLTESGTFLISPNAGPSDLAGKLCSPN-FFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPD 143 (333)
T ss_pred HHHHHHHhhcCCeEEecCCCCccccccCCCCc-EEEeeCChHHhHHHHHHHHHHhCCceEEEEecC
Confidence 33333333444454211 344 333333 3466777777789999988653
No 104
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=92.61 E-value=0.15 Score=48.24 Aligned_cols=33 Identities=39% Similarity=0.699 Sum_probs=29.4
Q ss_pred eEEEccCCCcceeEEEEEeeC----CcEEEEEEEECC
Q psy8319 40 DVAFSSQGDRIALTQIEQVIN----GSYTKLGFYDTQ 72 (330)
Q Consensus 40 ~V~Fd~nGdr~~~y~I~q~q~----~~~v~VG~y~~~ 72 (330)
.|.||++|||.+.|+|.++|. +.+++||.|++.
T Consensus 304 ~v~f~~~gd~~~~~~i~~~~~~~~~~~~~~vg~~~~~ 340 (348)
T cd06350 304 EVKFDENGDRLASYDIINWQIFPGGGGFVKVGFWDPQ 340 (348)
T ss_pred EEEecCCCCcccceeEEEEEEcCCcEEEEEEEEEcCC
Confidence 699999999999999999985 468999999863
No 105
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=92.56 E-value=0.32 Score=46.41 Aligned_cols=119 Identities=14% Similarity=0.044 Sum_probs=71.4
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.++++++..- ++....-++++|++++| |..++++..|+++ +..+...+=..+ .+...+++++.+|...
T Consensus 2 IG~l~plsG~~a~~g~~~~~g~~lA~~~in-------G~~i~l~~~D~~~-~~~a~~~~~~li-~~~V~~iiG~~~s~~~ 72 (336)
T cd06339 2 IALLLPLSGPLASVGQAIRNGFLAALYDLN-------GASIELRVYDTAG-AAGAAAAARQAV-AEGADIIVGPLLKENV 72 (336)
T ss_pred eEEEEcCCCcchHHHHHHHHHHHHHHHhcc-------CCCceEEEEeCCC-cccHHHHHHHHH-HcCCCEEEccCCHHHH
Confidence 466666665432 24556778999999999 8899999999999 887776665544 3333344556666543
Q ss_pred eehhhhhhcccceeecc--------cCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319 230 TTVAEAAKMWNLVVKKV--------EPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~~~w~~~~~~~--------~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
...+......++|.... .++.++.... ...+++.+...++++++.++.+
T Consensus 73 ~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~~ 133 (336)
T cd06339 73 AALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPD 133 (336)
T ss_pred HHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHHHHHHHHHHHHhcCccceEEEecC
Confidence 33323333344443211 3443332222 2345555555678888888653
No 106
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=92.48 E-value=0.17 Score=48.74 Aligned_cols=79 Identities=19% Similarity=0.141 Sum_probs=56.8
Q ss_pred hhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 150 LVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 150 liG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
-||.+.++++..- .+....-++++|+++||++=.+. |..++++..|++++|..+...+=..+...-..+++++-+|..
T Consensus 2 ~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GGi~-G~~i~l~~~Dd~~~p~~a~~~a~~Lv~~~~V~~iiG~~~S~~ 80 (359)
T TIGR03407 2 KVGILHSLSGTMAISETTLKDAELMAIEEINASGGVL-GKKIEPVVEDGASDWPTFAEKARKLITQDKVAAVFGCWTSAS 80 (359)
T ss_pred eEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEcCCcHHH
Confidence 4677777776443 23455678999999999886654 899999999999999998877756665444444445555544
Q ss_pred e
Q psy8319 229 C 229 (330)
Q Consensus 229 ~ 229 (330)
+
T Consensus 81 ~ 81 (359)
T TIGR03407 81 R 81 (359)
T ss_pred H
Confidence 4
No 107
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=92.30 E-value=0.21 Score=47.44 Aligned_cols=91 Identities=15% Similarity=0.079 Sum_probs=61.3
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
||.+.++++..- .+..+.-..++|+|.||++-. ..|.+++++..|++++|..+....=..+...-....+++.+|..+
T Consensus 2 IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gG-i~Gr~v~lv~~D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~~~ 80 (334)
T cd06356 2 VGSLEDRSGNFALYGTPKVHATQLAVDEINASGG-ILGREVELVDYDTQSDNERYQQYAQRLALQDKVDVVWGGISSASR 80 (334)
T ss_pred eEEEecCCCchhhccHHHHHHHHHHHHHHHhcCC-CCCceEEEEEECCCCCHHHHHHHHHHHHHhCCCCEEEeCcchHHH
Confidence 566677766543 255677889999999998755 468999999999999998888777666654434444456555544
Q ss_pred eehhhhhhcccce
Q psy8319 230 TTVAEAAKMWNLV 242 (330)
Q Consensus 230 ~~va~~~~~w~~~ 242 (330)
.........-+++
T Consensus 81 ~a~~~~~~~~~vp 93 (334)
T cd06356 81 EAIRPIMDRTKQL 93 (334)
T ss_pred HHHHHHHHhcCce
Confidence 3333333333444
No 108
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=92.02 E-value=0.2 Score=48.67 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVING 61 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~ 61 (330)
++.|.+.|++.+|.|++|++.||++||+. ..|.|.||+.+
T Consensus 322 ~~~l~~al~~~~~~~~~G~~~~~~~g~~~~~~~~i~~~~~~ 362 (369)
T PRK15404 322 PAKVAKYLKANTFDTVIGPLSWDEKGDLKGFEFGVFEWHAD 362 (369)
T ss_pred HHHHHHHHHhCCCCcceEeeEECCCCCcccCCEEEEEEEcC
Confidence 45788899999999999999999999974 67899999954
No 109
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=91.86 E-value=0.088 Score=51.33 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=30.4
Q ss_pred HHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeC
Q psy8319 24 DIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN 60 (330)
Q Consensus 24 ~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~ 60 (330)
.+.++|+.++|+|.||+|.||++|- ..+|++--|+.
T Consensus 325 ~~~~~~k~~~~~gltG~i~f~~~g~-R~~~~l~~~~~ 360 (368)
T cd06383 325 SPFNGSSEIKFEMLAGRVAIDEGSS-VSTKTIGSWSA 360 (368)
T ss_pred ccccCccceeEeeecCeEEEecCce-eeeeeeeeEec
Confidence 8899999999999999999999775 46677766653
No 110
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=88.15 E-value=0.88 Score=43.76 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=53.9
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEee
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLA 223 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~ 223 (330)
||.+.++++..- .+....-+.+||+++||++-.+ .|.+++++..|++.+|..+...+=.++-.+....++++
T Consensus 2 IG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GGi-~G~~ielv~~D~~~~p~~a~~~a~~li~~~~V~aiiG~ 74 (360)
T cd06357 2 VGVLFSRTGVTAAIERSQRNGALLAIEEINAAGGV-LGRELEPVEYDPGGDPDAYRALAERLLREDGVRVIFGC 74 (360)
T ss_pred eEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCCC-CCeEEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEeC
Confidence 566777766543 2566678899999999988553 58999999999999999998887777765444444444
No 111
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=87.92 E-value=3.2 Score=40.35 Aligned_cols=109 Identities=9% Similarity=-0.066 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhcCCCCCCCce-EEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec--
Q psy8319 169 PAAKLALEDVNNATDLLPGFK-LQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK-- 245 (330)
Q Consensus 169 ~~~~~A~~~iN~~~~ll~gf~-l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~-- 245 (330)
.+..+|.+.+|+. .+.+.+ ++++..|.++++..+...+-..+-. -....++|.+|..+..++......++|...
T Consensus 17 f~~ala~~~iN~~--gg~~~~~i~~v~~dd~~d~~~a~~~~c~Li~~-gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~ 93 (363)
T cd06381 17 FAVAVIDLNINEQ--ILQTEKITLSISFIDLNNHFDAVQEACDLMNQ-GILALVTSTGCASAIALQSLTDAMHIPHLFIQ 93 (363)
T ss_pred HHHHHHHhhcccc--ccCCccceeeeEeecCCChHHHHHHHHHHHhc-CcEEEEecCChhHHHHHHHHhhCCCCCEEEee
Confidence 4445555666654 335445 5667899999999998888777654 332233465444444445544444555421
Q ss_pred ------------------ccCceEEeee---hhHHHHHHHHHhcceEeecceeccc
Q psy8319 246 ------------------VEPWKLYTMV---TGLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 246 ------------------~~~~~l~~~v---~~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
..++.+.... ...++.+++..++|+.++.+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~~~~~ai~~lv~~~~wkkvavly~~d~ 149 (363)
T cd06381 94 RGYGGSPRTACGLNPSPRGQQYTLALRPPVRLNDVMLRLVTEWRWQKFVYFYDNDY 149 (363)
T ss_pred cCcCCCcccccccCCCcccceeEEEEeccHHHHHHHHHHHHhCCCeEEEEEEECCc
Confidence 1112111111 2467788999999999999887553
No 112
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=87.87 E-value=0.83 Score=42.79 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=29.4
Q ss_pred eeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEEC
Q psy8319 38 SGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDT 71 (330)
Q Consensus 38 sG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~ 71 (330)
||+++||++|+|.. .++|+++.++...+||.|+.
T Consensus 285 tg~~~f~~~g~~~~~~~~i~~~~~~~~~~~g~W~~ 319 (324)
T cd06368 285 TGRIQFDENGQRSNFTLDILELKEGGLRKVGTWNP 319 (324)
T ss_pred eeeeEeCCCCcCcceEEEEEEEcCCCceEEEEECC
Confidence 99999999999864 67888888777899999975
No 113
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=84.19 E-value=6 Score=38.20 Aligned_cols=110 Identities=18% Similarity=0.108 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceee
Q psy8319 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVK 244 (330)
Q Consensus 165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~ 244 (330)
..+.-+++||+|+||+.=.+ .|.+++++..|. ++|..+.+.+=..+ ..-...++++.+|.++..+...+...+++..
T Consensus 11 ~~~~~ga~lAveeiNaaGGv-~G~~ielv~~D~-~~p~~a~~~a~~Li-~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i 87 (347)
T TIGR03863 11 DRGLDGARLAIEDNNTTGRF-LGQTFTLDEVAV-RTPEDLVAALKALL-AQGVRFFVLDLPAAALLALADAAKAKGALLF 87 (347)
T ss_pred chHHHHHHHHHHHHHhhCCc-CCceEEEEEccC-CCHHHHHHHHHHHH-HCCCCEEEecCChHHHHHHHHHHHhCCcEEE
Confidence 34567899999999977554 488999998885 77777766665554 3334445556666555555555555555441
Q ss_pred c------------ccCceEEeeeh----hHHHHHHHHHhcceEeeccee
Q psy8319 245 K------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQR 277 (330)
Q Consensus 245 ~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~ 277 (330)
. -.+|.++.... ...+++.+..-..+++..++.
T Consensus 88 ~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~~ 136 (347)
T TIGR03863 88 NAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQG 136 (347)
T ss_pred eCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEeC
Confidence 1 12454443333 234455554456777777764
No 114
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=83.16 E-value=2.7 Score=40.31 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=54.8
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCC-CCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDL-LPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~l-l~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
+|.+.++++..- .+....-..++|.+.||.--.+ ..++.++++..|++++|..+...+=..+-..-..+++++..|..
T Consensus 2 IG~~~~lSG~~a~~G~~~~~~~~~~~~~in~g~~i~G~~~~i~lv~~D~~~~p~~a~~~a~~li~~d~v~~iiG~~~s~~ 81 (357)
T cd06337 2 IGYVSPRTGPLAAFGEADPWVLETMRSALADGLVVGGSTYEVEIIVRDSQSNPNRAGLVAQELILTDKVDLLLAGGTPDT 81 (357)
T ss_pred cceeccCcCcccccccchHHHHHHHHHHhcCCeeECCceeEEEEEEecCCCCHHHHHHHHHHHHhccCccEEEecCCcch
Confidence 566777776553 3555667889999999854322 23578999999999999999988877776533444445544444
Q ss_pred ee
Q psy8319 229 CT 230 (330)
Q Consensus 229 ~~ 230 (330)
+.
T Consensus 82 ~~ 83 (357)
T cd06337 82 TN 83 (357)
T ss_pred hh
Confidence 33
No 115
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=83.09 E-value=1.9 Score=41.47 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=33.6
Q ss_pred HHHHHHHHhcceEEeeeeeEEEcc-CCCcceeEEEEEee-CCcEEE
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSS-QGDRIALTQIEQVI-NGSYTK 65 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~~y~I~q~q-~~~~v~ 65 (330)
++.+.+.|++++|.++.|+++|++ +++....+.+.|++ +|+++.
T Consensus 300 ~~~i~~al~~~~~~~~~G~i~f~~~~~~~~~~~~~~~~~~~g~~~~ 345 (359)
T TIGR03407 300 VDAVRDAAIGIEFDAPEGKVKVDGKNHHLTKTVRIGEIRADGQFDV 345 (359)
T ss_pred HHHHHHHhcCCcccCCCccEEEeCCCCeeeeeeEEEEEccCCCEEE
Confidence 456788899999999999999997 44444566778886 676654
No 116
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=83.06 E-value=1.8 Score=41.30 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=33.7
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCC-CcceeEEEEEee-CCcEEEE
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQG-DRIALTQIEQVI-NGSYTKL 66 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nG-dr~~~y~I~q~q-~~~~v~V 66 (330)
++.+.+.|++++|.|..|+++||+++ .....+.+.|++ +|+++.|
T Consensus 299 ~~~i~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~i~~~~~~g~~~~v 345 (348)
T cd06355 299 VDKVRAALPGQSFDAPEGPVTVDPANHHLWKPVRIGRIQADGQFEIV 345 (348)
T ss_pred HHHHHHHhccCcccCCCcceEeecCCCeeeeeeEEEEEcCCCcEEEE
Confidence 35678889999999999999999843 334556788886 6766553
No 117
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=82.96 E-value=1.9 Score=40.52 Aligned_cols=128 Identities=16% Similarity=0.080 Sum_probs=74.2
Q ss_pred hhhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 150 LVGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 150 liG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
-+|.+.++++..-. +..-.-.+++|++++|++-.+ .|..++++..|++.++..+...+=..+..+...+++++.+|..
T Consensus 3 ~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vvg~~~s~~ 81 (343)
T PF13458_consen 3 KIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGI-NGRKIELVVYDDGGDPAQAVQAARKLIDDDGVDAVVGPLSSAQ 81 (343)
T ss_dssp EEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEE-TTEEEEEEEEE-TT-HHHHHHHHHHHHHTSTESEEEESSSHHH
T ss_pred EEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCc-CCccceeeeccCCCChHHHHHHHHHhhhhcCcEEEEecCCcHH
Confidence 46777777665532 334467789999999987323 4899999999999999998877766666565555555544444
Q ss_pred eeehhhhhhcccceee--------cccCceEEeeeh----hHHHHHH-HHHhcceEeecceec
Q psy8319 229 CTTVAEAAKMWNLVVK--------KVEPWKLYTMVT----GLLSIDL-VILLCWQFYDPLQRI 278 (330)
Q Consensus 229 ~~~va~~~~~w~~~~~--------~~~~~~l~~~v~----~~~~v~l-i~~~~W~~v~~~~~~ 278 (330)
...+++....-+++.. ...++.++.... ...+++- .......+++.++..
T Consensus 82 ~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~ 144 (343)
T PF13458_consen 82 AEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPD 144 (343)
T ss_dssp HHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEES
T ss_pred HHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 4333333333233321 234453333322 2344554 334677888888754
No 118
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=81.72 E-value=2 Score=39.82 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=28.7
Q ss_pred eeeEEEccCCCcce-eEEEEEee-CCcEEEEEEEEC
Q psy8319 38 SGDVAFSSQGDRIA-LTQIEQVI-NGSYTKLGFYDT 71 (330)
Q Consensus 38 sG~V~Fd~nGdr~~-~y~I~q~q-~~~~v~VG~y~~ 71 (330)
||+++||++|.|.. .++|.+.+ +...++||.|+.
T Consensus 287 tg~i~f~~~g~r~~~~l~i~~l~~~~~~~~vg~W~~ 322 (328)
T cd06351 287 TGTVSFDEDGVRSNFTLDIIELNRSRGWRKVGTWNG 322 (328)
T ss_pred EeeEEECCCCcccceEEEEEEecCCCCceEEEEecC
Confidence 99999999999873 56888887 667899999973
No 119
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=81.13 E-value=3.3 Score=38.83 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEcc-CCCcceeEEEEEee-CCc
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSS-QGDRIALTQIEQVI-NGS 62 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~~y~I~q~q-~~~ 62 (330)
=++.+.+.|++++|.|..|++.|+. +|.....+.|.|++ +|+
T Consensus 300 ~~~~v~~al~~~~~~g~~g~~~~~~~~~~~~~~~~i~~v~~~G~ 343 (343)
T PF13458_consen 300 DREAVREALESLKYDGLFGPISFDPPDHQANKPVYIVQVKSDGK 343 (343)
T ss_dssp HHHHHHHHHHTSEEEETTEEEEEETTTSBEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHhCCCcccccceEEeCCCCccccCeEEEEEecCCC
Confidence 3678889999999999999999975 44455678899998 663
No 120
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=77.73 E-value=1.8 Score=42.13 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=45.4
Q ss_pred hhhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 150 LVGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 150 liG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
-+|++...++..-. .....-+..||+|.||++-.+ .|..|+.+..|-+.++..-...+=..+...-.+ .++||..+
T Consensus 2 kVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGv-lG~~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V~--~ifGc~TS 78 (363)
T PF13433_consen 2 KVGILHSLTGTMAISERSLLDGALLAIEEINAAGGV-LGRQLEPVIYDPASDPSTYAEKAEKLIREDGVR--AIFGCYTS 78 (363)
T ss_dssp -EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTB-TTB--EEEEE--TT-HHHHHHHHHHHHHHS-----EEEE--SH
T ss_pred eEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCc-CCeEEEEEEECCCCCHHHHHHHHHHHHHhCCcc--EEEecchh
Confidence 35666666555432 344567889999999998665 489999999999999987777776666543333 36777554
Q ss_pred e
Q psy8319 229 C 229 (330)
Q Consensus 229 ~ 229 (330)
.
T Consensus 79 a 79 (363)
T PF13433_consen 79 A 79 (363)
T ss_dssp H
T ss_pred h
Confidence 4
No 121
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=75.42 E-value=7.3 Score=36.67 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=50.9
Q ss_pred hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
||.++++++..- ++....-.+++|++++|+.=. ..|.+++++..|+++++..+...+-..+-......++++.+|.
T Consensus 2 IGv~~p~sG~~a~~g~~~~~g~~~a~~~~N~~Gg-i~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~ 78 (341)
T cd06341 2 IGLLYPDTGVAAVSFPGARAGADAAAGYANAAGG-IAGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGA 78 (341)
T ss_pred eEEEecCCCchhhccHHHHHHHHHHHHHHHhcCC-cCCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEeccccc
Confidence 455666653221 245667789999999997744 3589999999999999988876664444431344444454443
No 122
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=73.55 E-value=5.8 Score=38.09 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=34.1
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEe-eCCcEEEEE
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQV-INGSYTKLG 67 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~-q~~~~v~VG 67 (330)
++.+.+.|++++|.|..|++.||.+++.. ....+.|+ ++|+++.+.
T Consensus 300 ~~~v~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~G~~~~~~ 347 (360)
T cd06357 300 PEDVLAALLGFSFDAPQGPVRIDPDNNHTYLWPRIARVNADGQFDIVR 347 (360)
T ss_pred HHHHHHHhccCcccCCCcceEEeCCCCeeeeeeEEEEEcCCCCEEEEE
Confidence 45688899999999999999999865533 34556677 677766554
No 123
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=72.93 E-value=23 Score=34.47 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhcCCCCC-CCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec-
Q psy8319 168 EPAAKLALEDVNNATDLL-PGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK- 245 (330)
Q Consensus 168 ~~~~~~A~~~iN~~~~ll-~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~- 245 (330)
..+.+.|++.+|.+...+ .+++|......-.-+....++-.+=-++.+-....++|..|..+..++..+...++|...
T Consensus 14 ~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~ 93 (371)
T cd06388 14 YTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITP 93 (371)
T ss_pred HHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeec
Confidence 567889999999765332 346777665554444443333333233344443344554444444445555555555421
Q ss_pred ----ccCceEEeee-h--hHHHHHHHHHhcceEeecceeccc
Q psy8319 246 ----VEPWKLYTMV-T--GLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 246 ----~~~~~l~~~v-~--~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
..++.++..+ + ...+++++..++|+.++.++....
T Consensus 94 ~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~wk~vaiiYd~~~ 135 (371)
T cd06388 94 SFPTEGESQFVLQLRPSLRGALLSLLDHYEWNRFVFLYDTDR 135 (371)
T ss_pred CccccCCCceEEEeChhhhhHHHHHHHhcCceEEEEEecCCc
Confidence 1222222111 1 356677899999999999997443
No 124
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=71.41 E-value=33 Score=33.77 Aligned_cols=127 Identities=10% Similarity=0.027 Sum_probs=73.5
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHH-HhhhccccEEEEee-ccc
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMY-NLLYNNPQKLMLLA-GCS 226 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~-~~l~~k~~ri~~i~-~cs 226 (330)
+-+|+++.-. -.-..+.+.|++.+|....++.+++|+.....-.=+...+++-.+ +.+..+-....++| ..+
T Consensus 19 i~iG~if~~~------~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~~~~dsf~~~~~vC~~ll~~GV~AIfg~p~s~ 92 (382)
T cd06377 19 VRLGALLVRA------PAPRDRVLAALARANRAPLLPYNLSLEVVAAAAPSRDPASLLRSVCQTVVVQGVSALLAFPQTR 92 (382)
T ss_pred eeeeEEecCC------chHHHHHHHHHHHhccccccccCceeEEeEEEcCCCChHHHHHHHHHhHhhCCeEEEEecCCCH
Confidence 4556666543 123678899999999998888999999887666544444444443 44345554433443 211
Q ss_pred ceeeehhhhhhcccceeecc----------cCceEE-eeeh-----hHHHHHHHHHhcceEeecceecccc
Q psy8319 227 TVCTTVAEAAKMWNLVVKKV----------EPWKLY-TMVT-----GLLSIDLVILLCWQFYDPLQRITEN 281 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~~----------~~~~l~-~~v~-----~~~~v~li~~~~W~~v~~~~~~~~~ 281 (330)
.....+.......++|.... .+.++. .+.+ ..++++++.+++|..+..++.....
T Consensus 93 ~~~~~v~sic~~l~IP~I~~~~~~~~~~~~~~~~l~L~l~P~~~~l~~a~~~ll~~~~W~~f~~iy~~~~g 163 (382)
T cd06377 93 PELVQLDFVSAALEIPVVSIVRREFPRGSQNPFHLQMSWASPLSTLLDVLLSVLQRNGWEDVSLVLCRERD 163 (382)
T ss_pred HHHHHHHHHhcCCCCCEEEecCCcccccCCCceeEEEEecCCHHHHHHHHHHHHHHCCCcEEEEEEecCcC
Confidence 11112222333444444221 111111 1122 4688999999999999999876553
No 125
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=70.58 E-value=18 Score=35.32 Aligned_cols=112 Identities=9% Similarity=0.047 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhcCCCCCCC-ceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec-
Q psy8319 168 EPAAKLALEDVNNATDLLPG-FKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK- 245 (330)
Q Consensus 168 ~~~~~~A~~~iN~~~~ll~g-f~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~- 245 (330)
..+.+.|++.+|.+..++.. ++|......-+-+....++-.+=-++.+-....++|..+.....+.......++|...
T Consensus 14 ~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~~~~dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~ 93 (372)
T cd06387 14 HSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITP 93 (372)
T ss_pred HHHHHHHHHHhcccccccccCeEEEEeeEEecCCChHHHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeee
Confidence 46778899999988765554 6777754444443333333333334444433222331111111122222222332211
Q ss_pred ------ccCceEEeee-hhHHHHHHHHHhcceEeecceecc
Q psy8319 246 ------VEPWKLYTMV-TGLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 246 ------~~~~~l~~~v-~~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..++.+...+ ...++++++.+++|+.+.++|...
T Consensus 94 ~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~Wr~~~~iYd~d 134 (372)
T cd06387 94 SFPTDADVQFVIQMRPALKGAILSLLAHYKWEKFVYLYDTE 134 (372)
T ss_pred CCCCCCCCceEEEEChhHHHHHHHHHHhcCCCEEEEEecCc
Confidence 0111111111 257889999999999999999654
No 126
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=66.99 E-value=7.9 Score=37.41 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=32.8
Q ss_pred HHHHHHHHhcce-EEeeeeeEEEccCCCcc-eeEEEEEeeC
Q psy8319 22 ADDIYAAINSTQ-FTGVSGDVAFSSQGDRI-ALTQIEQVIN 60 (330)
Q Consensus 22 ~~~l~~~l~~vs-F~GisG~V~Fd~nGdr~-~~y~I~q~q~ 60 (330)
++.+.+.|+... |.+.+|++.||++||+. ..+.|.+|+.
T Consensus 314 ~~~v~~al~~~~~~~~~~G~v~~~~~~~~~~~~~~i~~~~~ 354 (366)
T COG0683 314 REAVAEALKGGKFFDTAGGPVTFDEKGDRGSKPVYVGQVQK 354 (366)
T ss_pred HHHHHHHHhhCCCCccCCcceeECCCCCcCCCceEEEEEEe
Confidence 667888899887 68889999999999975 5688999983
No 127
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=61.85 E-value=30 Score=33.51 Aligned_cols=105 Identities=9% Similarity=0.081 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeecc-
Q psy8319 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKV- 246 (330)
Q Consensus 168 ~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~~- 246 (330)
..+.+.|++.+|++..+.+ ..+.+-. -|+......+=+ ++.+-....++|..+.....+++.+...++|....
T Consensus 14 ~~af~~av~~~N~~~~l~~--~~~~~~~---~dsf~~~~~~C~-~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~ 87 (364)
T cd06390 14 HAAFRFALSQLTEPPKLLP--QIDIVNI---SDSFEMTYTFCS-QFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPS 87 (364)
T ss_pred HHHHHHHHHHhccCccccc--ceEEecc---ccHHHHHHHHHH-HhhcCceEEEccCChhHHHHHHHhhcCCCCCceecC
Confidence 5678899999998764433 2222211 122222222112 33343333334543333334444444444443211
Q ss_pred ------cCceEEeeeh--hHHHHHHHHHhcceEeecceecc
Q psy8319 247 ------EPWKLYTMVT--GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 247 ------~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..+ ...+-+ ..++++++.+++|+.+..++.+.
T Consensus 88 ~~~~~~~~~-~i~~~P~~~~Ai~diI~~~~W~~v~iIYd~d 127 (364)
T cd06390 88 FPVDTSNQF-VLQLRPELQDALISVIEHYKWQKFVYIYDAD 127 (364)
T ss_pred CCCCCCCce-EEEeChhHHHHHHHHHHHcCCcEEEEEEeCC
Confidence 112 122222 56889999999999999999643
No 128
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=58.18 E-value=53 Score=31.73 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHH-HhhhccccEEEEeecccceeeehhhhhhcccceeecc
Q psy8319 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMY-NLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKV 246 (330)
Q Consensus 168 ~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~-~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~~ 246 (330)
..+.+.|++.+|.+ .++|......-.=+....++-.+ +.+-.+ ....++|-.|..+..++..+...++|....
T Consensus 14 ~~af~~a~~~~n~~-----~~~l~~~~~~~~~~dsf~~~~~~C~~~~~G-V~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~ 87 (370)
T cd06389 14 YSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRG-VYAIFGFYDKKSVNTITSFCGTLHVSFITP 87 (370)
T ss_pred HHHHHHHHHHhccc-----CceeeeeeEEecccchHHHHHHHHHHhhcC-cEEEEecCCHHHHHHHHHhhccCCCCeeee
Confidence 56788899999976 35666643333333322222222 333333 332334433333333444444444444211
Q ss_pred -----cCceE-Eeeeh--hHHHHHHHHHhcceEeecceec
Q psy8319 247 -----EPWKL-YTMVT--GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 247 -----~~~~l-~~~v~--~~~~v~li~~~~W~~v~~~~~~ 278 (330)
.++.+ ..+-+ ...+++++.++.|+.++.++..
T Consensus 88 ~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~wk~vailYds 127 (370)
T cd06389 88 SFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 127 (370)
T ss_pred cCCCCCCCceEEEecchhhhHHHHHHHhcCCcEEEEEecC
Confidence 12211 12222 4678899999999999999974
No 129
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=52.27 E-value=31 Score=33.48 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=32.3
Q ss_pred HHHHHHHHhc-ceEEeeeeeEEEccCCCc-ceeEEEEEeeC-CcEEEEEEE
Q psy8319 22 ADDIYAAINS-TQFTGVSGDVAFSSQGDR-IALTQIEQVIN-GSYTKLGFY 69 (330)
Q Consensus 22 ~~~l~~~l~~-vsF~GisG~V~Fd~nGdr-~~~y~I~q~q~-~~~v~VG~y 69 (330)
++.+.+.|++ .+|.|+.|+++||+++.. ...+.+.|++. |.+..+..|
T Consensus 298 ~~av~~aL~~~~~~~~~~G~i~fd~~~~~~~~~~~v~~~~~~~~~~~~~~~ 348 (374)
T TIGR03669 298 QDAVRDVLESGVEMDAPEGKVCIDGATHHMSHTMRLARADADHNITFVKEQ 348 (374)
T ss_pred HHHHHHHHHcCCeEECCCccEEEcCCCCeeeeeeEEEEEcCCCCEEEEEec
Confidence 3567788876 689999999999976543 33566777773 334333334
No 130
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=48.54 E-value=90 Score=26.78 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=54.1
Q ss_pred CceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeecc---------cCceEEeeeh-
Q psy8319 187 GFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKV---------EPWKLYTMVT- 256 (330)
Q Consensus 187 gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~~---------~~~~l~~~v~- 256 (330)
|+.+++...|++|++....... ..+..+....+++++|+.......+....+++|.... +++ +..+.+
T Consensus 30 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~-~~~~~~~ 107 (269)
T cd01391 30 GRGLEVILADSQSDPERALEAL-RDLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLTGYPY-VFRVGPD 107 (269)
T ss_pred CCceEEEEecCCCCHHHHHHHH-HHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCCCccCCCce-EEEEcCC
Confidence 7788999999999884443333 3333444454555665433322344455566665321 133 233322
Q ss_pred ----hHHHHHHHHHhcceEeecceecc
Q psy8319 257 ----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 257 ----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
+..+++.+...+|.+++.+....
T Consensus 108 ~~~~~~~~~~~l~~~~~~~i~~i~~~~ 134 (269)
T cd01391 108 NEQAGEAAAEYLAEKGWKRVALIYGDD 134 (269)
T ss_pred cHHHHHHHHHHHHHhCCceEEEEecCC
Confidence 46778889999999999886544
No 131
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=46.61 E-value=47 Score=32.17 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=24.5
Q ss_pred ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 246 VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 246 ~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
.+|++++...+ ..++++++.++.|+.+..++...
T Consensus 108 ~~p~flr~~Psd~~q~~Ai~~Ii~~f~W~~v~iV~~~~ 145 (362)
T cd06378 108 SGSTFLQFGPSIEQQAAVMLKIMEEYDWHAFSVVTSRF 145 (362)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHCCCeEEEEEEEcC
Confidence 34554444433 46889999999999999987654
No 132
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.54 E-value=26 Score=33.46 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCC
Q psy8319 23 DDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVING 61 (330)
Q Consensus 23 ~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~ 61 (330)
+.+.+.|++++|.++.|+++||++ +..+..|.-+++|
T Consensus 319 ~~v~~aL~~~~~~~~~G~~~f~~~--~~~~~~~~~~~~~ 355 (357)
T cd06337 319 AAVADAIATLKLDTVVGPVDFGNS--PIKNVAKTPLVGG 355 (357)
T ss_pred HHHHHHHHcCCcccceeeeecCCC--CCccccccccccC
Confidence 467889999999999999999864 4444555555443
No 133
>KOG1053|consensus
Probab=35.24 E-value=62 Score=35.36 Aligned_cols=60 Identities=13% Similarity=0.321 Sum_probs=38.4
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCccee--EEEEEeeCCcEEEEEEEECCCCceeecCccccCC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIAL--TQIEQVINGSYTKLGFYDTQADNLTWFDRERWIG 86 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~--y~I~q~q~~~~v~VG~y~~~~~~l~~~~~i~W~~ 86 (330)
+..+.++|.|++|.| +.++|+++|=.... +-|.--.+..+.+||.|... .|.+.. ..|+.
T Consensus 338 ~~~l~r~l~NvT~~g--~~lsf~~~g~~v~p~lvvI~l~~~r~We~VG~We~~--~L~M~y-~vWPr 399 (1258)
T KOG1053|consen 338 GETLHRFLANVTWDG--RDLSFNEDGYLVHPNLVVIDLNRDRTWERVGSWENG--TLVMKY-PVWPR 399 (1258)
T ss_pred hhhhhhhhheeeecc--cceeecCCceeeccceEEEecCCCcchheeceecCC--eEEEec-ccccc
Confidence 557889999999998 78999987753322 22211112357899999743 455432 25764
No 134
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=32.54 E-value=31 Score=28.36 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhheeee-ecceeeE
Q psy8319 104 SVPLVICMWTVATVGILFAVGLIIFNIC-YRHRRVI 138 (330)
Q Consensus 104 ~~~~~i~~~~~a~~gi~~~~~~~~~~i~-~r~~~~I 138 (330)
+.||.+.|++++++.++++++.+..+++ +|+++..
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~ 67 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQ 67 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhHhccccccc
Confidence 4689999999999999999999988865 5665555
No 135
>CHL00005 rps16 ribosomal protein S16
Probab=31.51 E-value=35 Score=26.03 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=27.0
Q ss_pred eEEEEEee-----CCc-EEEEEEEECCCCceeec-Ccc-ccCC-CCCCCCc
Q psy8319 52 LTQIEQVI-----NGS-YTKLGFYDTQADNLTWF-DRE-RWIG-GKVPQDR 93 (330)
Q Consensus 52 ~y~I~q~q-----~~~-~v~VG~y~~~~~~l~~~-~~i-~W~~-~~~P~s~ 93 (330)
-|.|+=-. +|+ ...||+|++..+.+.++ +.+ .|-+ |..|++.
T Consensus 16 ~YrIVvadsr~~RdGk~iE~lG~YnP~~~~~~ln~eri~~Wl~~GAqpt~t 66 (82)
T CHL00005 16 VYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTET 66 (82)
T ss_pred eEEEEEEeCCCCCCCcceeEeeeccCCCcccEEeHHHHHHHHHCcCccCHH
Confidence 46666443 455 47899999876556665 443 6865 5567764
No 136
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.53 E-value=90 Score=29.21 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=24.8
Q ss_pred hcceEEeeeeeEEEccC-CCcceeEEEEEeeCCc
Q psy8319 30 NSTQFTGVSGDVAFSSQ-GDRIALTQIEQVINGS 62 (330)
Q Consensus 30 ~~vsF~GisG~V~Fd~n-Gdr~~~y~I~q~q~~~ 62 (330)
.+..+.|.+|+++|+.+ +++...+-+.+.++|+
T Consensus 306 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~g~ 339 (340)
T cd06349 306 AEDVYSGVTGSTKFDPNTRRVIKRFVPLVVRNGK 339 (340)
T ss_pred hccCcccceEeEEECCCCCCccCceEEEEEeCCc
Confidence 34567899999999986 6666677777777654
No 137
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.37 E-value=85 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheeeeeccee
Q psy8319 105 VPLVICMWTVATVGILFAVGLIIFNICYRHRR 136 (330)
Q Consensus 105 ~~~~i~~~~~a~~gi~~~~~~~~~~i~~r~~~ 136 (330)
....+++.++++++++..+..+..|+.-|+++
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVILRer~ 91 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVILRERQ 91 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEEEeccc
Confidence 34555566666666666666666666666643
No 138
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.56 E-value=52 Score=27.03 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=5.8
Q ss_pred HHHHHHHhhheeee
Q psy8319 118 GILFAVGLIIFNIC 131 (330)
Q Consensus 118 gi~~~~~~~~~~i~ 131 (330)
|++..++++.+.++
T Consensus 76 GvIg~Illi~y~ir 89 (122)
T PF01102_consen 76 GVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 139
>PF07356 DUF1481: Protein of unknown function (DUF1481); InterPro: IPR010858 This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=20.08 E-value=38 Score=30.15 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=26.5
Q ss_pred ccCCCCCceecCChHHHHHHHHHH-----hcceEEeeeeeEEEccCCCcc
Q psy8319 6 KQGKTLKSFTYTNKEIADDIYAAI-----NSTQFTGVSGDVAFSSQGDRI 50 (330)
Q Consensus 6 ~~~~~l~~f~y~~~~~~~~l~~~l-----~~vsF~GisG~V~Fd~nGdr~ 50 (330)
..|-...||.|.+.+.+....+-. ..+.| +=+++||++|+..
T Consensus 33 ~~g~~~t~Yrwq~G~Lrei~r~~~~~~~~~~~p~---~v~lRFd~~G~av 79 (195)
T PF07356_consen 33 DYGTYQTDYRWQQGKLREIRREGEQLKDNGLVPY---SVHLRFDKDGEAV 79 (195)
T ss_pred CCCEEEEEEEEeCCEeeeeeeehhhcccCCCCCc---eEEEEECCCCCEE
Confidence 345566788888887765554433 23333 2269999998853
Done!