Query psy8319
Match_columns 330
No_of_seqs 193 out of 1304
Neff 7.4
Searched_HMMs 29240
Date Sat Aug 17 00:40:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f11_A Gamma-aminobutyric acid 99.4 8.6E-13 3E-17 127.8 10.5 86 9-95 342-428 (433)
2 1dp4_A Atrial natriuretic pept 99.0 8.5E-10 2.9E-14 106.5 8.6 74 22-95 345-422 (435)
3 4gpa_A Glutamate receptor 4; P 98.8 4.8E-09 1.6E-13 99.0 7.9 57 21-78 320-377 (389)
4 1jdp_A NPR-C, atrial natriuret 98.8 5.7E-09 2E-13 101.2 8.3 75 22-96 342-421 (441)
5 3ks9_A Mglur1, metabotropic gl 98.6 3.3E-08 1.1E-12 98.1 7.6 68 22-92 420-496 (496)
6 1jdp_A NPR-C, atrial natriuret 98.6 3.5E-08 1.2E-12 95.6 7.6 129 149-279 10-164 (441)
7 3qek_A NMDA glutamate receptor 98.6 5.7E-08 2E-12 92.3 7.6 66 20-87 316-384 (384)
8 1dp4_A Atrial natriuretic pept 98.6 4.8E-08 1.6E-12 94.1 7.1 127 149-275 3-152 (435)
9 4f11_A Gamma-aminobutyric acid 98.6 4.2E-08 1.4E-12 94.7 6.1 131 148-279 14-164 (433)
10 2e4u_A Metabotropic glutamate 98.5 1E-07 3.6E-12 95.6 7.7 131 148-279 14-196 (555)
11 3mq4_A Mglur7, metabotropic gl 98.5 9.6E-08 3.3E-12 94.3 7.3 61 22-85 413-480 (481)
12 2e4u_A Metabotropic glutamate 98.5 9.6E-08 3.3E-12 95.9 6.9 69 22-93 403-484 (555)
13 3mq4_A Mglur7, metabotropic gl 98.5 1.2E-07 4.1E-12 93.6 7.4 130 149-279 17-196 (481)
14 3sm9_A Mglur3, metabotropic gl 98.5 9.2E-08 3.1E-12 94.5 6.3 64 22-88 402-478 (479)
15 3sm9_A Mglur3, metabotropic gl 98.5 1.5E-07 5.2E-12 93.0 7.3 114 165-279 41-195 (479)
16 3o21_A Glutamate receptor 3; p 98.3 3.7E-07 1.3E-11 87.4 5.7 122 149-276 6-137 (389)
17 3ks9_A Mglur1, metabotropic gl 98.3 1.1E-06 3.9E-11 87.0 8.8 114 165-279 49-207 (496)
18 3om0_A Glutamate receptor, ion 98.3 9.3E-07 3.2E-11 84.2 6.9 129 149-279 5-149 (393)
19 4gpa_A Glutamate receptor 4; P 98.3 1.3E-06 4.4E-11 82.2 7.4 126 149-280 6-141 (389)
20 3o21_A Glutamate receptor 3; p 98.1 1.8E-06 6.3E-11 82.5 5.8 53 21-73 322-375 (389)
21 3hsy_A Glutamate receptor 2; l 98.1 2.9E-06 9.8E-11 80.5 6.2 54 20-73 315-369 (376)
22 3om0_A Glutamate receptor, ion 98.1 3.5E-06 1.2E-10 80.1 6.8 54 20-73 322-376 (393)
23 3qek_A NMDA glutamate receptor 98.1 4.6E-06 1.6E-10 79.1 7.4 123 149-279 6-149 (384)
24 3saj_A Glutamate receptor 1; r 98.0 9.6E-06 3.3E-10 77.0 6.7 52 21-72 319-371 (384)
25 3h6g_A Glutamate receptor, ion 97.9 1.6E-05 5.5E-10 75.5 6.4 126 149-277 5-146 (395)
26 3qel_B Glutamate [NMDA] recept 97.8 1.1E-05 3.8E-10 76.7 4.7 61 21-86 301-363 (364)
27 3h6g_A Glutamate receptor, ion 97.8 2.1E-05 7.2E-10 74.6 6.3 53 21-73 324-378 (395)
28 3kg2_A Glutamate receptor 2; I 97.8 2.9E-05 9.9E-10 80.9 6.7 118 149-277 3-129 (823)
29 3hsy_A Glutamate receptor 2; l 97.7 3.3E-05 1.1E-09 73.2 5.4 116 149-276 3-128 (376)
30 3kg2_A Glutamate receptor 2; I 97.6 7.2E-05 2.5E-09 77.8 6.7 54 19-72 314-368 (823)
31 3h5l_A Putative branched-chain 97.6 0.00012 3.9E-09 70.1 7.2 129 149-279 15-174 (419)
32 3saj_A Glutamate receptor 1; r 97.5 6.6E-05 2.3E-09 71.1 4.2 118 148-277 10-136 (384)
33 3td9_A Branched chain amino ac 97.4 0.00012 4.2E-09 68.3 5.5 51 22-72 312-363 (366)
34 4gnr_A ABC transporter substra 97.4 0.00014 4.9E-09 67.6 5.7 95 148-243 7-102 (353)
35 4evq_A Putative ABC transporte 97.3 0.00037 1.3E-08 65.0 6.9 49 22-70 314-362 (375)
36 3i45_A Twin-arginine transloca 97.2 0.00019 6.3E-09 67.8 4.4 130 149-278 6-151 (387)
37 3n0x_A Possible substrate bind 97.1 0.00046 1.6E-08 64.9 5.0 130 149-279 5-151 (374)
38 3hut_A Putative branched-chain 97.0 0.00046 1.6E-08 64.0 4.6 47 25-71 305-353 (358)
39 3h5l_A Putative branched-chain 96.9 0.00048 1.6E-08 65.7 4.0 67 21-93 333-414 (419)
40 4f06_A Extracellular ligand-bi 96.9 0.00096 3.3E-08 62.7 5.6 127 149-279 6-149 (371)
41 1usg_A Leucine-specific bindin 96.9 0.00051 1.8E-08 63.2 3.6 45 22-66 299-345 (346)
42 4gnr_A ABC transporter substra 96.8 0.0017 5.8E-08 60.2 6.1 48 22-69 303-351 (353)
43 3td9_A Branched chain amino ac 96.7 0.0014 4.7E-08 61.0 5.2 124 149-277 17-157 (366)
44 3ipc_A ABC transporter, substr 96.6 0.00078 2.7E-08 62.4 2.6 50 22-71 298-351 (356)
45 3lop_A Substrate binding perip 96.5 0.0027 9.2E-08 59.1 5.6 128 149-278 6-150 (364)
46 3hut_A Putative branched-chain 96.5 0.004 1.4E-07 57.6 6.7 128 149-278 5-148 (358)
47 3eaf_A ABC transporter, substr 96.5 0.0023 7.8E-08 60.4 5.0 127 149-277 5-149 (391)
48 3ipc_A ABC transporter, substr 96.5 0.0033 1.1E-07 58.1 5.8 127 149-278 3-147 (356)
49 4eyg_A Twin-arginine transloca 96.4 0.0031 1.1E-07 58.4 5.6 127 149-278 7-148 (368)
50 4eyg_A Twin-arginine transloca 96.4 0.0061 2.1E-07 56.5 7.6 50 22-71 305-359 (368)
51 3i09_A Periplasmic branched-ch 96.1 0.0089 3.1E-07 55.7 7.0 128 149-279 5-150 (375)
52 3n0w_A ABC branched chain amin 96.1 0.0068 2.3E-07 56.7 6.2 127 149-278 7-151 (379)
53 3lkb_A Probable branched-chain 95.9 0.0085 2.9E-07 56.2 5.4 128 149-278 8-152 (392)
54 3ckm_A YRAM (HI1655), LPOA; pe 95.7 0.0069 2.4E-07 55.9 4.0 44 27-70 280-323 (327)
55 1usg_A Leucine-specific bindin 95.6 0.012 4E-07 53.9 5.3 127 149-278 3-147 (346)
56 4evq_A Putative ABC transporte 95.4 0.0091 3.1E-07 55.4 3.8 127 148-278 16-160 (375)
57 1pea_A Amidase operon; gene re 95.3 0.019 6.3E-07 53.9 5.4 49 22-70 308-358 (385)
58 3lkb_A Probable branched-chain 95.2 0.0056 1.9E-07 57.5 1.4 50 22-71 313-374 (392)
59 3snr_A Extracellular ligand-bi 95.1 0.017 5.9E-07 53.0 4.4 46 21-66 312-361 (362)
60 3sg0_A Extracellular ligand-bi 94.4 0.036 1.2E-06 51.3 4.8 46 21-66 336-385 (386)
61 3eaf_A ABC transporter, substr 94.4 0.028 9.5E-07 52.8 4.0 50 22-71 317-371 (391)
62 3i45_A Twin-arginine transloca 94.2 0.07 2.4E-06 49.8 6.6 50 22-71 308-359 (387)
63 1pea_A Amidase operon; gene re 94.0 0.077 2.6E-06 49.5 6.4 128 149-278 8-149 (385)
64 3i09_A Periplasmic branched-ch 93.7 0.05 1.7E-06 50.6 4.4 40 22-61 302-341 (375)
65 3snr_A Extracellular ligand-bi 93.5 0.024 8.2E-07 52.0 1.7 122 149-278 8-144 (362)
66 4f06_A Extracellular ligand-bi 93.2 0.17 5.7E-06 47.1 7.1 49 22-70 308-361 (371)
67 3sg0_A Extracellular ligand-bi 92.7 0.038 1.3E-06 51.2 1.9 122 149-278 28-168 (386)
68 2h4a_A YRAM (HI1655); perplasm 92.0 0.12 4.3E-06 47.9 4.4 40 29-68 280-319 (325)
69 3n0x_A Possible substrate bind 90.9 0.26 8.7E-06 45.8 5.4 39 22-60 307-346 (374)
70 3n0w_A ABC branched chain amin 90.0 0.27 9.1E-06 45.6 4.6 40 22-61 305-345 (379)
71 3qel_B Glutamate [NMDA] recept 88.8 0.89 3E-05 42.5 7.3 107 168-278 17-145 (364)
72 3lop_A Substrate binding perip 81.9 1.2 4E-05 40.9 4.3 47 22-68 309-359 (364)
73 3ckm_A YRAM (HI1655), LPOA; pe 65.6 5.8 0.0002 35.8 4.5 118 148-278 2-133 (327)
74 2h4a_A YRAM (HI1655); perplasm 32.4 22 0.00075 32.5 2.5 115 151-278 3-131 (325)
75 3r8n_P 30S ribosomal protein S 27.7 21 0.00072 26.1 1.2 43 51-93 15-70 (82)
No 1
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.39 E-value=8.6e-13 Score=127.84 Aligned_cols=86 Identities=31% Similarity=0.581 Sum_probs=79.1
Q ss_pred CCCCceecCChHHHHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEECCCCceeec-CccccCCC
Q psy8319 9 KTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWF-DRERWIGG 87 (330)
Q Consensus 9 ~~l~~f~y~~~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~~~~~~l~~~-~~i~W~~~ 87 (330)
..+++|+|++.+.+++|.++|++++|.|++|+|+| ++|||...|+|.|+|+|++++||.|+...+.|+++ +.|.|+++
T Consensus 342 ~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~~~~~I~~~~~g~~~~VG~~~~~~~~l~~~~~~i~W~~~ 420 (433)
T 4f11_A 342 QRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERMGTIKFTQFQDSREVKVGEYNAVADTLEIINDTIRFQGS 420 (433)
T ss_dssp CCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEECEEEEEEEETTEEEEEEEEETTTTEEEECTTTCCCSSS
T ss_pred CcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCceeeeEEEEEEECCceEEEEEEECCCCeEEEeCCceECCCC
Confidence 35889999999999999999999999999999999 89999999999999999999999999877789887 67999999
Q ss_pred CCCCCccc
Q psy8319 88 KVPQDRTQ 95 (330)
Q Consensus 88 ~~P~s~~~ 95 (330)
.||.|++.
T Consensus 421 ~~P~D~~~ 428 (433)
T 4f11_A 421 EPPKDDYK 428 (433)
T ss_dssp SCCCSSGG
T ss_pred CCCCCccc
Confidence 99999863
No 2
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=98.98 E-value=8.5e-10 Score=106.50 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=65.4
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEe--eCCcEEEEEEEECCCCceee-c-CccccCCCCCCCCccc
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQV--INGSYTKLGFYDTQADNLTW-F-DRERWIGGKVPQDRTQ 95 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~--q~~~~v~VG~y~~~~~~l~~-~-~~i~W~~~~~P~s~~~ 95 (330)
+++|.++|++++|.|++|+|+||++||+.+.|+|.|+ ++|++++||.|+...+++.+ + +.|.|+++++|.|.+.
T Consensus 345 ~~~l~~~l~~~~f~g~~G~v~fd~~g~~~~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~~~~~~i~W~~~~~P~~~p~ 422 (435)
T 1dp4_A 345 GENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVSEHKLYWPLGYPPPDVPK 422 (435)
T ss_dssp HHHHHHTTTTEEEEETTEEEEECTTSBBCCCEEEEEECTTTCCEEEEEEECTTTCCEEESTTCCCCCTTSSCCCSSCT
T ss_pred HHHHHHHHhCceeeccceeEEECCCCCccceeEEEEecCCCCcEEEEEEecCCCceEEEcCCceeeCCCCCCCCCCCC
Confidence 5688899999999999999999999999999999999 56789999999976557887 5 6899999999999753
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.83 E-value=4.8e-09 Score=99.03 Aligned_cols=57 Identities=18% Similarity=0.406 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECCCCceee
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQADNLTW 78 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~~~~l~~ 78 (330)
.+.+|+++|++++|+|+||+|+||+||||.. .|+|+|+|++.+++||.|++.+ .|.+
T Consensus 320 ~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~-gl~~ 377 (389)
T 4gpa_A 320 QGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMD-KLVL 377 (389)
T ss_dssp THHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTT-EEEE
T ss_pred hHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCC-CeEE
Confidence 4678999999999999999999999999974 7999999988899999999764 4544
No 4
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=98.83 E-value=5.7e-09 Score=101.18 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=52.4
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee---CCcEEEEEEEECCCCceeec--CccccCCCCCCCCccce
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI---NGSYTKLGFYDTQADNLTWF--DRERWIGGKVPQDRTQI 96 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q---~~~~v~VG~y~~~~~~l~~~--~~i~W~~~~~P~s~~~~ 96 (330)
+++|.++|++++|.|++|+|+||++||+.+.|+|.|+| +|++++||.|++..+.+++. .++.|++++.|.+.+.+
T Consensus 342 ~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~~~~~I~~~~~~~~g~~~~VG~~~~~~~~~~~~~~~~i~w~g~~l~i~~~~i 421 (441)
T 1jdp_A 342 GGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRI 421 (441)
T ss_dssp HHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEETTTTEEEEEEEEETTTTEEEECC------------------
T ss_pred HHHHHHHHhCCeeECCccceEECCCCCccccEEEEecccCCCCceEEEEEEcCCCCeEEECCCceeeCCCCCccCCCCCc
Confidence 56889999999999999999999999999999999997 46799999999877778775 47899998888776643
No 5
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=98.65 E-value=3.3e-08 Score=98.14 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=51.0
Q ss_pred HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC---C--cEEEEEEEECCCCceeec-CccccCCC--CCCCC
Q psy8319 22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN---G--SYTKLGFYDTQADNLTWF-DRERWIGG--KVPQD 92 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~---~--~~v~VG~y~~~~~~l~~~-~~i~W~~~--~~P~s 92 (330)
.++|+++|++++|++.+| .|.||++||+.+.|||.|||. | .+++||.|+. +.|+++ +.| |.++ ++|.+
T Consensus 420 ~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~~YdI~n~~~~~~~~~~~~~VG~~~~--~~l~i~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 420 GSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHE--GVLNIDDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp HHHHHHHHHTCEEECTTSCEEECCTTSCCCCEEEEEEEEECC--CEEEEEEEEEET--TEEEECTTTC------------
T ss_pred HHHHHHHHHhcCCcCCCCCEEEECCCCCccceEEEEEEEECCCCCEEEEEEEEEeC--CeEEEehhhc-ccCCCCCCCCC
Confidence 468999999999999999 699999999999999999982 3 4789999983 468887 567 6553 57753
No 6
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=98.65 E-value=3.5e-08 Score=95.60 Aligned_cols=129 Identities=19% Similarity=0.266 Sum_probs=94.6
Q ss_pred hhhhhhhhccccccc-ccchHHHHHHHHHhhhcCCC----CCCCceEEEEeecCCcCCchhHHHHHHhhh---ccccEEE
Q psy8319 149 MLVGIAFCMSLNFNL-PFACEPAAKLALEDVNNATD----LLPGFKLQLHWNDSECEPGLGASVMYNLLY---NNPQKLM 220 (330)
Q Consensus 149 iliG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~----ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~---~k~~ri~ 220 (330)
+-+|.++++++.... +..+..++++|+|+||++.. +++|++|++++.|++|++. +...+.+.+. .+....+
T Consensus 10 i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~ai 88 (441)
T 1jdp_A 10 IEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAKPDLI 88 (441)
T ss_dssp EEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCCCSEE
T ss_pred eEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCCceEE
Confidence 678888888775443 24567899999999999987 8899999999999999998 6554444432 2134445
Q ss_pred Eeecccceeeehhhhhhcccceeec-------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 221 LLAGCSTVCTTVAEAAKMWNLVVKK-------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 221 ~i~~cs~~~~~va~~~~~w~~~~~~-------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
++|.||..+..++.....|++|+.+ .+|+ ++++.+ ...+++++.+++|+.++.++.+.
T Consensus 89 iG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~-~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 89 LGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSH-LTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp ECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTT-EEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCc-eEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 5688998888888888888888721 3566 455544 35778899999999999988653
No 7
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=98.61 E-value=5.7e-08 Score=92.34 Aligned_cols=66 Identities=23% Similarity=0.465 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcceE-EeeeeeEEEccCCCc-ceeEEEEEeeCCcEEEEEEEECCCCceeec-CccccCCC
Q psy8319 20 EIADDIYAAINSTQF-TGVSGDVAFSSQGDR-IALTQIEQVINGSYTKLGFYDTQADNLTWF-DRERWIGG 87 (330)
Q Consensus 20 ~~~~~l~~~l~~vsF-~GisG~V~Fd~nGdr-~~~y~I~q~q~~~~v~VG~y~~~~~~l~~~-~~i~W~~~ 87 (330)
+.+..|.+.+.+++| .|++|+|+||++|++ ...|+|.||+++.+++||.|+. ++++++ +.|.|++|
T Consensus 316 ~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~--~~l~i~~~~i~W~~~ 384 (384)
T 3qek_A 316 KTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNG--SYIIQNDRKIIWPGG 384 (384)
T ss_dssp TTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEEETTEEEEEEEECS--SSEEECSSCCCCSCC
T ss_pred ccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEEcCCceEEEEEEeC--CeEeeccceeeCCCC
Confidence 467889999999999 999999999999998 7899999999888999999984 467776 68899874
No 8
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=98.60 E-value=4.8e-08 Score=94.12 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=95.1
Q ss_pred hhhhhhhhcccccc-cc-cchHHHHHHHHHhhhcCCCCCCCceEEEEeecC-----CcCCchhHHHHHHhhhccccEEEE
Q psy8319 149 MLVGIAFCMSLNFN-LP-FACEPAAKLALEDVNNATDLLPGFKLQLHWNDS-----ECEPGLGASVMYNLLYNNPQKLML 221 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~-~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds-----~c~~~~~~t~~~~~l~~k~~ri~~ 221 (330)
+.+|++++..+... .+ ....+++++|+|+||++..+++|++|++++.|+ +|++..+...+...+..+....++
T Consensus 3 i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~avi 82 (435)
T 1dp4_A 3 LTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVFL 82 (435)
T ss_dssp EEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEEE
T ss_pred eEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceEEE
Confidence 45777888765432 22 233448999999999999999999999999999 677777777777777655555556
Q ss_pred eecccceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecc
Q psy8319 222 LAGCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPL 275 (330)
Q Consensus 222 i~~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~ 275 (330)
++.||..+..++..+..|++|+.+ .+|++++.... +.++++++.+++|+.++.+
T Consensus 83 G~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii 152 (435)
T 1dp4_A 83 GPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALV 152 (435)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEE
Confidence 688998888888888888888731 25664444333 3577899999999999998
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=98.58 E-value=4.2e-08 Score=94.69 Aligned_cols=131 Identities=21% Similarity=0.348 Sum_probs=104.4
Q ss_pred hhhhhhhhhcccccc---cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhcc-ccEEEEee
Q psy8319 148 IMLVGIAFCMSLNFN---LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNN-PQKLMLLA 223 (330)
Q Consensus 148 ~iliG~ll~~~~~~~---~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k-~~ri~~i~ 223 (330)
.+.+|.++++++... .+..+..++++|+|+||++ .++.|++|++++.|++|++..+...+...+... ....++++
T Consensus 14 ~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~aviG~ 92 (433)
T 4f11_A 14 PLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGG 92 (433)
T ss_dssp EEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEEEC
T ss_pred ceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 478899999988653 4567889999999999999 888999999999999999999999988887652 34445568
Q ss_pred cccceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 224 GCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 224 ~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
.||..+..++.....|++|+.. .+|+.++.... +.++++++.+++|+.++.++.+.
T Consensus 93 ~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~ 164 (433)
T 4f11_A 93 VCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDV 164 (433)
T ss_dssp CSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred CcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecc
Confidence 8988888888888888888721 24664443333 46888999999999999998754
No 10
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=98.54 E-value=1e-07 Score=95.63 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=98.6
Q ss_pred hhhhhhhhhccccc-----------ccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhh---
Q psy8319 148 IMLVGIAFCMSLNF-----------NLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLY--- 213 (330)
Q Consensus 148 ~iliG~ll~~~~~~-----------~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~--- 213 (330)
-+.+|++++..+.. ..+.....++++|+|+||++..+++|.+|++++.|+.|++..+...+...+.
T Consensus 14 ~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~~~~ 93 (555)
T 2e4u_A 14 DLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASL 93 (555)
T ss_dssp SEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHhCcC
Confidence 36788888887643 1233446789999999999999999999999999999999888877665542
Q ss_pred ---------------------ccccEEEEeecccceeeehhhhhhcccceeec------------ccCceEEeeeh----
Q psy8319 214 ---------------------NNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT---- 256 (330)
Q Consensus 214 ---------------------~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~---- 256 (330)
.+....++++.+|..+..++.....+++|+.+ .+|+ ++++++
T Consensus 94 ~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~-~fr~~p~d~~ 172 (555)
T 2e4u_A 94 TKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDY-FARTVPPDFY 172 (555)
T ss_dssp --------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTT-EEESSCCHHH
T ss_pred cccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCC-ceeeCCChHH
Confidence 12233344578888777788888888888732 3566 455554
Q ss_pred -hHHHHHHHHHhcceEeecceecc
Q psy8319 257 -GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 257 -~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..++++++.+++|+.++.++.+.
T Consensus 173 ~~~a~~~ll~~fgw~~V~ii~~d~ 196 (555)
T 2e4u_A 173 QAKAMAEILRFFNWTYVSTVASEG 196 (555)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHcCCeEEEEEEeeC
Confidence 36788999999999999998754
No 11
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=98.54 E-value=9.6e-08 Score=94.27 Aligned_cols=61 Identities=25% Similarity=0.435 Sum_probs=50.4
Q ss_pred HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEee---CC--cEEEEEEEECCCCceeec-CccccC
Q psy8319 22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVI---NG--SYTKLGFYDTQADNLTWF-DRERWI 85 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q---~~--~~v~VG~y~~~~~~l~~~-~~i~W~ 85 (330)
.++|+++|++++|++.+| +|.||+|||+.+.|||.||| ++ .+++||.|+ ++|.++ +.|.|+
T Consensus 413 ~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~~YdI~n~~~~~~~~~~~~~VG~~~---~~l~i~~~~i~W~ 480 (481)
T 3mq4_A 413 GKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWT---DELQLNIEDMQWG 480 (481)
T ss_dssp HHHHHHHHHTCEEECTTSSEEECCTTSCCCCEEEEEEEC-----CCCEEEEEEEE---TTEEEECSCC---
T ss_pred HHHHHHHHhcceeecCCCCEEEECCCCCCceeEEEEEEEECCCCcEEEEEEEEEc---CccEecccccccC
Confidence 368999999999999999 79999999999999999998 22 578999998 368887 678996
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=98.52 E-value=9.6e-08 Score=95.90 Aligned_cols=69 Identities=26% Similarity=0.467 Sum_probs=59.8
Q ss_pred HHHHHH-HHhcceEE------eeeee-EEEccCCCcceeEEEEEee--CC--cEEEEEEEECCCCceeec-CccccCCCC
Q psy8319 22 ADDIYA-AINSTQFT------GVSGD-VAFSSQGDRIALTQIEQVI--NG--SYTKLGFYDTQADNLTWF-DRERWIGGK 88 (330)
Q Consensus 22 ~~~l~~-~l~~vsF~------GisG~-V~Fd~nGdr~~~y~I~q~q--~~--~~v~VG~y~~~~~~l~~~-~~i~W~~~~ 88 (330)
.++|.+ +|++++|. |.+|+ |+||++||+.+.|+|.||| +| .+++||.|+. .|.++ +.|.|++++
T Consensus 403 ~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~~~y~I~~~~~~~g~~~~~~VG~~~~---~l~i~~~~I~W~~~~ 479 (555)
T 2e4u_A 403 GKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMGRYNVFNLQQTGGKYSYLKVGHWAE---TLSLDVDSIHWSRNS 479 (555)
T ss_dssp HHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCCCCEEEEEEECTTSSCEEEEEEEESS---SEECCGGGCCCTTSS
T ss_pred cccccHHhHhceeecccccccCCCCCeEEEcCCCCccceEEEEEEEecCCcEEEEEEEEecc---eEEEeccccccCCCC
Confidence 467888 99999999 99996 9999999999999999997 34 4899999973 67776 689998888
Q ss_pred CCCCc
Q psy8319 89 VPQDR 93 (330)
Q Consensus 89 ~P~s~ 93 (330)
+|.|.
T Consensus 480 ~P~S~ 484 (555)
T 2e4u_A 480 VPTSQ 484 (555)
T ss_dssp CCCCC
T ss_pred Cccee
Confidence 99884
No 13
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=98.52 E-value=1.2e-07 Score=93.59 Aligned_cols=130 Identities=17% Similarity=0.185 Sum_probs=94.5
Q ss_pred hhhhhhhhcccccc-----------cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc---
Q psy8319 149 MLVGIAFCMSLNFN-----------LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN--- 214 (330)
Q Consensus 149 iliG~ll~~~~~~~-----------~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~--- 214 (330)
+.+|++++..+... .+..-..++++|+|+||++..+++|.+|+++..|+.|++..+...+...+-.
T Consensus 17 i~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~~~~~ 96 (481)
T 3mq4_A 17 VTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQ 96 (481)
T ss_dssp EEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGGGGSC
T ss_pred EEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHhCCcc
Confidence 57788887765442 2344567899999999999999999999999999999999888888776643
Q ss_pred -------------------cccEEEEeecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hH
Q psy8319 215 -------------------NPQKLMLLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GL 258 (330)
Q Consensus 215 -------------------k~~ri~~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~ 258 (330)
+....++++.+|..+..++.....+++|+. ..+|+ ++++.+ ..
T Consensus 97 ~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~-~fr~~psd~~~~~ 175 (481)
T 3mq4_A 97 KDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDF-FSRVVPPDSFQAQ 175 (481)
T ss_dssp CCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTT-EEESSCCTHHHHH
T ss_pred cCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCc-eEEecCchHHHHH
Confidence 112223346777666677777777887763 23576 455544 46
Q ss_pred HHHHHHHHhcceEeecceecc
Q psy8319 259 LSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 259 ~~v~li~~~~W~~v~~~~~~~ 279 (330)
.+++++.+++|+.++.++.+.
T Consensus 176 a~~~ll~~fgw~~V~li~~d~ 196 (481)
T 3mq4_A 176 AMVDIVKALGWNYVSTLASEG 196 (481)
T ss_dssp HHHHHHHHHTCCEEEEC---C
T ss_pred HHHHHHHHCCCeEEEEEEEcc
Confidence 788999999999999997643
No 14
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=98.51 E-value=9.2e-08 Score=94.54 Aligned_cols=64 Identities=22% Similarity=0.412 Sum_probs=52.6
Q ss_pred HHHHH-HHHhcceEEee------ee-eEEEccCCCcceeEEEEEee--CC--cEEEEEEEECCCCceeec-CccccCCCC
Q psy8319 22 ADDIY-AAINSTQFTGV------SG-DVAFSSQGDRIALTQIEQVI--NG--SYTKLGFYDTQADNLTWF-DRERWIGGK 88 (330)
Q Consensus 22 ~~~l~-~~l~~vsF~Gi------sG-~V~Fd~nGdr~~~y~I~q~q--~~--~~v~VG~y~~~~~~l~~~-~~i~W~~~~ 88 (330)
.++|+ ++|++++|++. +| +|.||+|||+.+.|+|.||| +| .+++||.|+ ++|+++ +.|.|++++
T Consensus 402 ~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~~~YdI~n~~~~~~~~~~~~VG~~~---~~l~i~~~~I~W~~~~ 478 (479)
T 3sm9_A 402 GKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNVGGKYSYLKVGHWA---ETLSLDVNSIHWSRNS 478 (479)
T ss_dssp HHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCCCCEEEEEEEESSSCEEEEEEEEES---SSEEECGGGCCCC---
T ss_pred hHHHHHHHhcceeeccccCccccCCCeEEECCCCCcccceEEEEEEECCCcEEEEEEEEEe---ceEEEecceeEeCCCC
Confidence 56899 99999999998 67 79999999999999999998 33 478999997 468887 679998764
No 15
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=98.49 E-value=1.5e-07 Score=92.98 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhcc------------------------ccEEE
Q psy8319 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNN------------------------PQKLM 220 (330)
Q Consensus 165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k------------------------~~ri~ 220 (330)
..-..+.++|+|+||++..+++|.+|.++..|+.|++..++..+...+-.. ....+
T Consensus 41 ~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~~~~~~~~~pny~C~~~~~~~~~~~~~~v~av 120 (479)
T 3sm9_A 41 IQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGV 120 (479)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHHTCC-----------------------CEEEE
T ss_pred HHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHhCCCccCCCCCCccCCCCccccccCCCceEEE
Confidence 344678999999999999999999999999999999999988887776541 12223
Q ss_pred Eeecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 221 LLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 221 ~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
+++.+|..+..++.....+++|+. ..+|+ ++++.+ ..++++++.+++|+.++.++.+.
T Consensus 121 iG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~-~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd 195 (479)
T 3sm9_A 121 IGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDY-FARTVPPDFYQAKAMAEILRFFNWTYVSTVASEG 195 (479)
T ss_dssp ECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTT-EEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred ECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCC-eEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEecc
Confidence 447777777777788888888873 23676 455544 46789999999999999998653
No 16
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.34 E-value=3.7e-07 Score=87.38 Aligned_cols=122 Identities=10% Similarity=0.020 Sum_probs=92.4
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCC-CCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDL-LPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~l-l~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
+-+|+++++++. ....++++|+|+||++..+ +.|.+|+++..|++| ++..+...+-..+-.+ ...+++|.||
T Consensus 6 i~IG~i~~~sg~-----~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~-V~aiiG~~~S 79 (389)
T 3o21_A 6 ISIGGLFMRNTV-----QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRG-VYAIFGFYDQ 79 (389)
T ss_dssp EEEEEEECTTCH-----HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTT-CSCEEECCCT
T ss_pred eEEEEEeCCCCH-----HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEeCCCh
Confidence 467888888765 5678999999999999888 689999999999999 7877777776665543 3334568888
Q ss_pred ceeeehhhhhhcccceeec-------ccCceEEeee-hhHHHHHHHHHhcceEeecce
Q psy8319 227 TVCTTVAEAAKMWNLVVKK-------VEPWKLYTMV-TGLLSIDLVILLCWQFYDPLQ 276 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~-------~~~~~l~~~v-~~~~~v~li~~~~W~~v~~~~ 276 (330)
..+..++.....+++|+.. ..++.++... -+.++++++.+++|+.++.++
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~~~~~~~~~~~~~~p~~~~a~~~~~~~~gw~~vaii~ 137 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAILSLLSYYKWEKFVYLY 137 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSCCCSSCCSSEEECSCCSHHHHHHHHHHHTCCEEEEEE
T ss_pred hHHHHHHHHhccCCCceeecCCCCccCCceEEEEccCHHHHHHHHHHhCCCCEEEEEE
Confidence 8887778888888888751 1222122111 256788999999999999998
No 17
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=98.32 E-value=1.1e-06 Score=87.04 Aligned_cols=114 Identities=16% Similarity=0.245 Sum_probs=86.8
Q ss_pred cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhh----------------------------ccc
Q psy8319 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLY----------------------------NNP 216 (330)
Q Consensus 165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~----------------------------~k~ 216 (330)
..-..+..+|+|.||++..+++|.+|.+...|+.|++..++..+...+. .+.
T Consensus 49 ~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~ 128 (496)
T 3ks9_A 49 IQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKP 128 (496)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHSTTC--------------------------CC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHHHHHHhhhccccccCCCCccccCcccccccccCCCc
Confidence 3456788999999999999999999999999999999988888877661 112
Q ss_pred cEEEEeecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 217 QKLMLLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 217 ~ri~~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
...++++.+|..+..++.....+++|+. ..+|+ ++++.+ ..++++++.+++|+.++.++.+.
T Consensus 129 v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~-~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd 207 (496)
T 3ks9_A 129 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY-FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEG 207 (496)
T ss_dssp EEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTT-EEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred eEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCc-eEEecCChHHHHHHHHHHHHHcCCcEEEEEEecc
Confidence 2223447777777777777777888763 23566 455544 46889999999999999998643
No 18
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=98.28 E-value=9.3e-07 Score=84.18 Aligned_cols=129 Identities=9% Similarity=-0.033 Sum_probs=91.5
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
+-+|.++++++.+ +.....++++|+|+||++..++.|++|+++..|++|++..+.......+..+....+++|.||..
T Consensus 5 ikIG~~~~~s~~~--G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 5 LRMAAILDDQTVC--GRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp EEEEEEECCCCSS--CCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred eeEEEEecCCCcc--cHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 5678888887543 44678899999999999999999999999999999998755444433333443444456888744
Q ss_pred e-eehhhhhhcccceeec---------ccCce-EEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 229 C-TTVAEAAKMWNLVVKK---------VEPWK-LYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 229 ~-~~va~~~~~w~~~~~~---------~~~~~-l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
+ ..++.....+++|+.. .+|++ .+++.+ ...+++++.+++|+.++.++.+.
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~ 149 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKA 149 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCCC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESST
T ss_pred HHHHHHHHHhccCCCeEeccCCcCccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCc
Confidence 3 4666777777777632 24443 145544 35778999999999999998744
No 19
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.26 E-value=1.3e-06 Score=82.18 Aligned_cols=126 Identities=12% Similarity=0.024 Sum_probs=85.0
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCC-CCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLL-PGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll-~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
|.||++++..+ .....+.++|+|+||++..++ .+++|.+...++.|+.+......+-.+..+.....++|.||.
T Consensus 6 I~IG~lf~~~~-----~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~ 80 (389)
T 4gpa_A 6 VQIGGLFIRNT-----DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKR 80 (389)
T ss_dssp EEEEEEECTTC-----HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCCTT
T ss_pred EEEEEEEcCCC-----hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCccH
Confidence 45777776543 345778999999999998776 566555555555544433333333233344444556799999
Q ss_pred eeeehhhhhhcccceee---------cccCceEEeeehhHHHHHHHHHhcceEeecceeccc
Q psy8319 228 VCTTVAEAAKMWNLVVK---------KVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITE 280 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~---------~~~~~~l~~~v~~~~~v~li~~~~W~~v~~~~~~~~ 280 (330)
.+..++..+..|++|.. ..+++ +++.....++++++.+++|+.++.++....
T Consensus 81 ~~~~v~~i~~~~~ip~is~~~~~~~~~~~~~-~~~~~~~~a~~~l~~~~~w~~vaii~~~d~ 141 (389)
T 4gpa_A 81 SVHTLTSFCSALHISLITPSFPTEGESQFVL-QLRPSLRGALLSLLDHYEWNCFVFLYDTDR 141 (389)
T ss_dssp THHHHHHHHHHTTCEEEECSCCCSSCCSSEE-ECSCCCHHHHHHHHHHTTCCEEEEEECSTT
T ss_pred HHHHHHHHHHHhCCCceeccccccccccCCc-cccCCHHHHHHHHHHHcCCcEEEEEEecch
Confidence 98888888889988873 22333 223445678999999999999999986543
No 20
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.15 E-value=1.8e-06 Score=82.51 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECCC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQA 73 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~~ 73 (330)
-++.|.++|++++|.|+||+++||+||||. ..|+|++++++.+++||.|++..
T Consensus 322 ~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 375 (389)
T 3o21_A 322 QGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE 375 (389)
T ss_dssp TTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred CcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCC
Confidence 357899999999999999999999999987 48999999987899999998653
No 21
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=98.11 E-value=2.9e-06 Score=80.53 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECCC
Q psy8319 20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQA 73 (330)
Q Consensus 20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~~ 73 (330)
.-++.|.++|++++|.|++|+|+||++|||. ..|+|.+++++.+++||.|++..
T Consensus 315 ~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 369 (376)
T 3hsy_A 315 GQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVD 369 (376)
T ss_dssp HHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTT
T ss_pred CCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCC
Confidence 4567899999999999999999999999975 58999999988899999998653
No 22
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=98.10 E-value=3.5e-06 Score=80.11 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcceEEeeeeeEEEccCCCc-ceeEEEEEeeCCcEEEEEEEECCC
Q psy8319 20 EIADDIYAAINSTQFTGVSGDVAFSSQGDR-IALTQIEQVINGSYTKLGFYDTQA 73 (330)
Q Consensus 20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr-~~~y~I~q~q~~~~v~VG~y~~~~ 73 (330)
.-++.+.++|++++|.|++|+++||++||+ ...|+|++++++.+++||.|++..
T Consensus 322 ~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 376 (393)
T 3om0_A 322 PHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNR 376 (393)
T ss_dssp TTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC-
T ss_pred cCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCC
Confidence 446789999999999999999999999998 478999999988899999998643
No 23
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=98.10 E-value=4.6e-06 Score=79.08 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=85.9
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEe-----e
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLL-----A 223 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i-----~ 223 (330)
+-+|++++.+ ....+.+||+|+||++- ...+++++++..|++|++..+...+...+..+-....++ +
T Consensus 6 i~IG~i~~~s-------~~~~~~~lAv~~iN~~~-~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~~~ 77 (384)
T 3qek_A 6 VNIGAVLSTK-------KHEQIFREAVNQANKRH-FTRKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPAP 77 (384)
T ss_dssp EEEEEEESSH-------HHHHHHHHHHHHHHHHS-CCSSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC----
T ss_pred EEEeEEeeCc-------hHHHHHHHHHHHHhccc-cCCceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCCCC
Confidence 4577777775 45788999999999875 567899999999999999888866556444443333445 3
Q ss_pred cccceeeehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 224 GCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 224 ~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
.||..+..++.....+++|+. ..+|++++.... ..++++++.+++|+.++.++.+.
T Consensus 78 ~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~ 149 (384)
T 3qek_A 78 TDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDD 149 (384)
T ss_dssp ----CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred ccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Confidence 577666666777777887762 124664443333 46888999999999999998744
No 24
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=97.96 E-value=9.6e-06 Score=77.00 Aligned_cols=52 Identities=23% Similarity=0.521 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~ 72 (330)
=++.+.++|++++|.|++|+|+||+|||+. ..|+|+|++++.+.+||.|+..
T Consensus 319 ~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~ 371 (384)
T 3saj_A 319 QGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 371 (384)
T ss_dssp THHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETT
T ss_pred CcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCC
Confidence 367899999999999999999999999976 5799999998888999999864
No 25
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=97.86 E-value=1.6e-05 Score=75.49 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=93.6
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+-+|++++.++. ..+.....++++|+|+||++..++.+++|++.+.|++| |++.+...+...+-.+ ...++++.||.
T Consensus 5 i~IG~l~~~sg~-~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~-V~aiiG~~~S~ 82 (395)
T 3h6g_A 5 LRFGGIFEYVES-GPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLG-VAAIFGPSHSS 82 (395)
T ss_dssp EEEEEEEEESSS-CSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHC-CSCEECCSSHH
T ss_pred eEEEEEecCCCc-ccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcC-cEEEECCCChh
Confidence 567888888765 23456788999999999999999999999999988885 6666666665555333 33345688888
Q ss_pred eeeehhhhhhcccceeec----------ccCceEEeeeh-----hHHHHHHHHHhcceEeeccee
Q psy8319 228 VCTTVAEAAKMWNLVVKK----------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQR 277 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~----------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~ 277 (330)
.+..++.....+++|... ..++ ++++.+ +.++++++.+++|+.++.++.
T Consensus 83 ~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~-~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~d 146 (395)
T 3h6g_A 83 SANAVQSICNALGVPHIQTRWKHQVSDNKDSF-YVSLYPDFSSLSRAILDLVQFFKWKTVTVVYD 146 (395)
T ss_dssp HHHHHHHHHHHTTCCEEECSCCCCCTTCCCCS-EEEEEECHHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhcCCCCeEeeccCcccccccCce-EEEecCCHHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 877777888888888732 1344 455544 357788999999999999874
No 26
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=97.83 E-value=1.1e-05 Score=76.69 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CCcEEEEEEEECCCCceeecCccccCC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NGSYTKLGFYDTQADNLTWFDRERWIG 86 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~~~v~VG~y~~~~~~l~~~~~i~W~~ 86 (330)
-+..|+++|++++|+|. +++||++|+|. ..|+|.+++ ++.+++||.|+ ++.|.++ .+.|+.
T Consensus 301 ~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~--~~~L~~~-~~~Wp~ 363 (364)
T 3qel_B 301 QSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWK--DKSLQMK-YYVWPR 363 (364)
T ss_dssp CCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEEC--SSCEEES-CSSCCC
T ss_pred CHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEEC--CCeEEeC-cCCCCC
Confidence 45688999999999987 89999999997 689999998 56799999997 3457664 678963
No 27
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=97.81 E-value=2.1e-05 Score=74.64 Aligned_cols=53 Identities=17% Similarity=0.402 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEcc-CCCcce-eEEEEEeeCCcEEEEEEEECCC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSS-QGDRIA-LTQIEQVINGSYTKLGFYDTQA 73 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~-~y~I~q~q~~~~v~VG~y~~~~ 73 (330)
-++.+.++|++++|.|++|+++||+ +|+|.. .|+|.|++++.+++||.|+...
T Consensus 324 ~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~ 378 (395)
T 3h6g_A 324 FGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPAS 378 (395)
T ss_dssp THHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTT
T ss_pred ccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCC
Confidence 3668899999999999999999998 999976 7999999988899999998643
No 28
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.75 E-value=2.9e-05 Score=80.85 Aligned_cols=118 Identities=11% Similarity=0.154 Sum_probs=87.3
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
+-+|++++.++. ....++++|+|+||++. ++|+++..|++|+...........+..+....+++|.||..
T Consensus 3 ikIG~l~~~tg~-----~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 3 IQIGGLFPRGAD-----QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp EEEEEEEETTCH-----HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred ceEEEEeCCCCh-----HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 457777777664 56889999999999885 89999999999954444444444444554555567889888
Q ss_pred eeehhhhhhcccceeec-------ccCceEEeeeh--hHHHHHHHHHhcceEeeccee
Q psy8319 229 CTTVAEAAKMWNLVVKK-------VEPWKLYTMVT--GLLSIDLVILLCWQFYDPLQR 277 (330)
Q Consensus 229 ~~~va~~~~~w~~~~~~-------~~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~~ 277 (330)
+..++..+..|++|+.+ .+++ ++++.+ +.++++++.+++|+.++.++.
T Consensus 73 ~~a~~~i~~~~~iP~is~~~~~~~~~~~-~~r~~p~~~~a~~~l~~~~gw~~v~ii~d 129 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPSFPTDGTHPF-VIQMRPDLKGALLSLIEYYQWDKFAYLYD 129 (823)
T ss_dssp HHHHHHHHHHTTCEEEECSCCCSSCCSS-EEECSCCCHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHhhcCCCceeecccCCCCCCce-EEEeCCCHHHHHHHHHHHCCCCEEEEEEe
Confidence 88888888888888732 2344 344433 568889999999999999984
No 29
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=97.68 E-value=3.3e-05 Score=73.17 Aligned_cols=116 Identities=11% Similarity=0.119 Sum_probs=85.5
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+-+|++++.++. ....+++||+|+||++ |++|+++..|++| ++..+...+-..+- +....+++|.||.
T Consensus 3 i~IG~i~~~sg~-----~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~-~~V~aiiG~~~S~ 71 (376)
T 3hsy_A 3 IQIGGLFPRGAD-----QEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFS-RGVYAIFGFYDKK 71 (376)
T ss_dssp EEEEEEEETTCH-----HHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCTT
T ss_pred eeEEEEeCCCCH-----HHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHh-cCcEEEECCCchh
Confidence 456777776553 4578999999999988 8999999999998 66666665555554 3344455688888
Q ss_pred eeeehhhhhhcccceeec-------ccCceEEeeeh--hHHHHHHHHHhcceEeecce
Q psy8319 228 VCTTVAEAAKMWNLVVKK-------VEPWKLYTMVT--GLLSIDLVILLCWQFYDPLQ 276 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~-------~~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~ 276 (330)
.+..++.....+++|+.+ ..++ ++++.+ ..++++++.+++|+.++.++
T Consensus 72 ~~~av~~~~~~~~ip~is~~~~~~~~~~~-~~~~~p~~~~a~~~~~~~~gw~~vaii~ 128 (376)
T 3hsy_A 72 SVNTITSFCGTLHVSFITPSFPTDGTHPF-VIQMRPDLKGALLSLIEYYQWDKFAYLY 128 (376)
T ss_dssp THHHHHHHHHHHTCEEEECSCCCCSCCTT-EEECSCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHhccCcCceeecCCCCcccCCc-eEEeCccHHHHHHHHHHhcCCCEEEEEE
Confidence 887777888888888742 1233 344433 46778899999999999998
No 30
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.58 E-value=7.2e-05 Score=77.82 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECC
Q psy8319 19 KEIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 19 ~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~ 72 (330)
..-++.+.++|++++|.|++|+++||++||+. ..|+|.|++++.+++||.|++.
T Consensus 314 ~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~ 368 (823)
T 3kg2_A 314 WGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEV 368 (823)
T ss_dssp CTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETT
T ss_pred ccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCC
Confidence 35678999999999999999999999999986 5799999998888999999854
No 31
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=97.55 E-value=0.00012 Score=70.07 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=94.6
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-cCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-CEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
+-+|.++++++..- .+.....++++|+|+||++-.++ |.+++++..|++ |++..+...+-..+..+....++++.||
T Consensus 15 i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~~s 93 (419)
T 3h5l_A 15 VVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGYNL 93 (419)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSCCS
T ss_pred EEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEccccc
Confidence 67888888877643 24667889999999999887664 999999999998 8998888877777764555555568888
Q ss_pred ceeeehhhhhhcccceeec----------------ccCceEEeeeh-----hHHHHHHHHHh--------cceEeeccee
Q psy8319 227 TVCTTVAEAAKMWNLVVKK----------------VEPWKLYTMVT-----GLLSIDLVILL--------CWQFYDPLQR 277 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~----------------~~~~~l~~~v~-----~~~~v~li~~~--------~W~~v~~~~~ 277 (330)
..+..++.....+++|... .+++ ++++.+ +..+++.+..+ +|++++.++.
T Consensus 94 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~-~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~ 172 (419)
T 3h5l_A 94 ENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWG-TFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITG 172 (419)
T ss_dssp SCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTT-EEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEEC
T ss_pred hhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCce-EEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence 7777777777778877632 2344 444443 34566777765 8999999986
Q ss_pred cc
Q psy8319 278 IT 279 (330)
Q Consensus 278 ~~ 279 (330)
+.
T Consensus 173 ~~ 174 (419)
T 3h5l_A 173 PG 174 (419)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 32
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=97.47 E-value=6.6e-05 Score=71.14 Aligned_cols=118 Identities=9% Similarity=-0.005 Sum_probs=83.2
Q ss_pred hhhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 148 IMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 148 ~iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
.+-+|.++++++. ....+++||+|+||++- +|+++..|++| ++..+...+ .-+..+....++++.||
T Consensus 10 ~ikIG~~~~~sg~-----~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~-~~l~~~~V~aiiG~~~S 77 (384)
T 3saj_A 10 NIQIGGLFPNQQS-----QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRF-CSQFSKGVYAIFGFYER 77 (384)
T ss_dssp EEEEEEEESCSSS-----HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHH-HHHHHTTCSCEEECCCH
T ss_pred ceeEEEEecCCCH-----HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHH-HHHHhcCeEEEECCCCH
Confidence 3568888888775 56889999999999874 99999999999 555444444 33434434445568888
Q ss_pred ceeeehhhhhhcccceeecc-------cCceEEeee-hhHHHHHHHHHhcceEeeccee
Q psy8319 227 TVCTTVAEAAKMWNLVVKKV-------EPWKLYTMV-TGLLSIDLVILLCWQFYDPLQR 277 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~~-------~~~~l~~~v-~~~~~v~li~~~~W~~v~~~~~ 277 (330)
..+..++..+..+++|+.+. .++.++... -...+++++.+++|+.++.++.
T Consensus 78 ~~~~a~~~~~~~~~iP~is~~~~~~~~~~~~~~~~p~~~~a~~~~~~~~g~~~v~ii~d 136 (384)
T 3saj_A 78 RTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQEALISIIDHYKWQTFVYIYD 136 (384)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCCSSCCTTEEECSCCCHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHhccCCCCeEeccccCcCccCceEEecccHHHHHHHHHHHCCCcEEEEEEe
Confidence 77777777777788776321 223222111 2567889999999999999983
No 33
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=97.43 E-value=0.00012 Score=68.27 Aligned_cols=51 Identities=27% Similarity=0.392 Sum_probs=46.5
Q ss_pred HHHHHHHHhcce-EEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEECC
Q psy8319 22 ADDIYAAINSTQ-FTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQ 72 (330)
Q Consensus 22 ~~~l~~~l~~vs-F~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~~~ 72 (330)
++.+.+.|++++ |.|++|+++||++|++...+.|.|+++|+++.||.|++.
T Consensus 312 ~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 312 REKIAEEIRKTRNFNGASGIINIDENGDAIKSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp HHHHHHHHTTCCSEEETTEEECBCTTSCBCCCEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHHHHhCCCCcccceeeEECCCCCccCceEEEEEECCEEEEEEecChh
Confidence 467889999998 999999999999999998899999999999999999753
No 34
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=97.41 E-value=0.00014 Score=67.57 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=74.6
Q ss_pred hhhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 148 IMLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 148 ~iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
.|.||.++++++..- .+....-++++|+|+||++-.+. |.++++++.|++|+|..+...+-..+......+++++.||
T Consensus 7 tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~~s 85 (353)
T 4gnr_A 7 TIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATS 85 (353)
T ss_dssp EEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCCSH
T ss_pred eEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEeccccC
Confidence 356888888877654 24567788999999999986654 9999999999999999999888777766655555567787
Q ss_pred ceeeehhhhhhccccee
Q psy8319 227 TVCTTVAEAAKMWNLVV 243 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~ 243 (330)
..+..++.....++++.
T Consensus 86 ~~~~a~~~~~~~~~vp~ 102 (353)
T 4gnr_A 86 GATAAAVANATKAGVPL 102 (353)
T ss_dssp HHHHHHHHHHHHTTCCE
T ss_pred cccceehhhhhccCcce
Confidence 77766666677777765
No 35
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=97.29 E-value=0.00037 Score=64.98 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=45.4
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEE
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYD 70 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~ 70 (330)
++.+.+.|++++|.|++|+++||++|++...+.|.|+++|+++.||..-
T Consensus 314 ~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~i~~~~~g~~~~v~~~~ 362 (375)
T 4evq_A 314 RKELNAAMAAASFASPRGPFKLSAAHNPVQNFYLRELKGGKSVNLGLAA 362 (375)
T ss_dssp HHHHHHHHHTCEEEETTEEEEBCTTSCBCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHhcCCcccCCcceeECCCCCccccEEEEEEECCCcEEeeehh
Confidence 5678899999999999999999999999999999999999999999874
No 36
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=97.25 E-value=0.00019 Score=67.77 Aligned_cols=130 Identities=16% Similarity=0.116 Sum_probs=90.8
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319 149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV 228 (330)
Q Consensus 149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~ 228 (330)
+.+|.++++++...++.....++++|+++||++-.++.|.+++++..|++|++..+...+-..+..+....++++.+|..
T Consensus 6 i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~ 85 (387)
T 3i45_A 6 IRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFLSHV 85 (387)
T ss_dssp EEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCSHHH
T ss_pred EEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcchHH
Confidence 45788887766543334467789999999999977765599999999999999888877766665433334455766666
Q ss_pred eeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319 229 CTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 229 ~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
+..++.....+++|... .+++.++.... +..+++.+...+|++++.++.+
T Consensus 86 ~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (387)
T 3i45_A 86 GLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPN 151 (387)
T ss_dssp HHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCS
T ss_pred HHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 55555666666666522 24553333332 3567888888999999999754
No 37
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=97.05 E-value=0.00046 Score=64.87 Aligned_cols=130 Identities=11% Similarity=0.061 Sum_probs=87.6
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|.++++++..- .+.....++++|+|++|+...-..|.+++++..|++|++..+...+-..+.......++++.||.
T Consensus 5 i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 84 (374)
T 3n0x_A 5 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSA 84 (374)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred EEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCCCcH
Confidence 45788888876543 24566788999999999854445699999999999999999888887766544444455677777
Q ss_pred eeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 228 VCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
.+..++.....+++|... .+++.++.... ...++.++...+| +++.++.+.
T Consensus 85 ~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~ 151 (374)
T 3n0x_A 85 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDY 151 (374)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESS
T ss_pred HHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCc
Confidence 666556666666655421 14554433222 2344466667788 677777643
No 38
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=97.03 E-value=0.00046 Score=64.04 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=39.5
Q ss_pred HHHHHhcc-eEEeeeeeEEEccCCCc-ceeEEEEEeeCCcEEEEEEEEC
Q psy8319 25 IYAAINST-QFTGVSGDVAFSSQGDR-IALTQIEQVINGSYTKLGFYDT 71 (330)
Q Consensus 25 l~~~l~~v-sF~GisG~V~Fd~nGdr-~~~y~I~q~q~~~~v~VG~y~~ 71 (330)
+.+.|+++ +|.|++|+++||++|++ ...+.|.|+++|+++.+..++.
T Consensus 305 ~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 305 LRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp HHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred HHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 88999999 99999999999999998 6789999999999998888764
No 39
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=96.94 E-value=0.00048 Score=65.73 Aligned_cols=67 Identities=9% Similarity=0.016 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcceEEeeeeeEEEccCCCcce-------------eEEEEEeeCCcE--EEEEEEECCCCceeecCccccC
Q psy8319 21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-------------LTQIEQVINGSY--TKLGFYDTQADNLTWFDRERWI 85 (330)
Q Consensus 21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-------------~y~I~q~q~~~~--v~VG~y~~~~~~l~~~~~i~W~ 85 (330)
=++.+.++|++++|.|++|+++||++|+... ...|.|||+|+. +.| |-.. . -..++.|+
T Consensus 333 ~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~g~~~~~~V--~P~~---~-a~~~~~~P 406 (419)
T 3h5l_A 333 QNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDKAEDGVLI--APAP---Y-KKAGFKMP 406 (419)
T ss_dssp HHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCTTSCCEEE--ESTT---S-CSSCCCCC
T ss_pred CHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCceEEEeeCCceeeEEE--CCch---h-hcCcccCC
Confidence 4567889999999999999999999999543 245899998877 543 4211 0 02467888
Q ss_pred CCCCCCCc
Q psy8319 86 GGKVPQDR 93 (330)
Q Consensus 86 ~~~~P~s~ 93 (330)
...+|.|.
T Consensus 407 ~~~~~~~~ 414 (419)
T 3h5l_A 407 PWMKGEGH 414 (419)
T ss_dssp TTC-----
T ss_pred ccccCCCc
Confidence 76666553
No 40
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=96.89 E-value=0.00096 Score=62.73 Aligned_cols=127 Identities=9% Similarity=0.051 Sum_probs=91.0
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
|-||.++++++..- .+.....++++|++++|.. ..|..++++..|++| +|..+...+=..+.......++++.||
T Consensus 6 IkIG~~~plSG~~a~~G~~~~~g~~la~~~~ngg---i~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~S 82 (371)
T 4f06_A 6 IKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNK---VAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYFT 82 (371)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSE---ETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCSH
T ss_pred EEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCC---CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 56788888877654 2556678899999999843 468999999999997 677777766566655555555668788
Q ss_pred ceeeehhhhhhcccceee----------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319 227 TVCTTVAEAAKMWNLVVK----------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~----------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..+..++..+..+++|.. ...|+ .+++.. ...+++.+...+|.+++.++.+.
T Consensus 83 ~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~-~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~ 149 (371)
T 4f06_A 83 PNAMAVAPLLQEAKVPMVVMNAATSSITEKSPY-IVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDY 149 (371)
T ss_dssp HHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTT-EEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred cchHHHHHHHHhhcCCccccccccchhcccCCc-ceecccchhhhhhhhhhhhhhcCceEEEEEcCCc
Confidence 777666666667776652 12455 344433 34667888899999999998653
No 41
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=96.88 E-value=0.00051 Score=63.19 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CCcEEEE
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NGSYTKL 66 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~~~v~V 66 (330)
++.+.+.|++++|.|++|+++||++||+. ..|.+.|+| +|+++.|
T Consensus 299 ~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 299 PLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp HHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred HHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 45678889999999999999999999987 579999999 8887754
No 42
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=96.75 E-value=0.0017 Score=60.20 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=40.6
Q ss_pred HHHHHHHHhcc-eEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEE
Q psy8319 22 ADDIYAAINST-QFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFY 69 (330)
Q Consensus 22 ~~~l~~~l~~v-sF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y 69 (330)
++.+.+.|.++ +|.|++|+++||+|||+...+.+.|+++|+++.+...
T Consensus 303 ~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~~~~~i~~v~~Gk~~~~~~v 351 (353)
T 4gnr_A 303 SGEIKDNLAXTKDFEGVTGQTSFDADHNTVKTAYMMTMNNGKVEAAEVV 351 (353)
T ss_dssp HHHHHHHHHTCCCEEETTEEECCCTTSCCCCCEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHhcCCCccCceeEEECCCcCCcCCeEEEEEECCEEEEEEEe
Confidence 45677888887 6999999999999999998889999999988766543
No 43
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=96.71 E-value=0.0014 Score=61.02 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=87.6
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
..+|.++++++..- .+....-++++|++++|+ ..|.+++++..|++|++..+...+-..+..+....++++.||.
T Consensus 17 ~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~----i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~ 92 (366)
T 3td9_A 17 VKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT----VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASA 92 (366)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE----ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred EEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh----cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCch
Confidence 46788888888664 245667889999999998 3599999999999999988877776666554455555677766
Q ss_pred eeeehhhhhhcccceeec----------ccCceEEeeeh-----hHHHHHHH-HHhcceEeeccee
Q psy8319 228 VCTTVAEAAKMWNLVVKK----------VEPWKLYTMVT-----GLLSIDLV-ILLCWQFYDPLQR 277 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~----------~~~~~l~~~v~-----~~~~v~li-~~~~W~~v~~~~~ 277 (330)
.+..+++....+++|... .+++ .+++.+ +..+++.+ ..++|++++.++.
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 157 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPASTNPLVTQGRKF-VSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTD 157 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCCCGGGTTTCSS-EEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred hHHHHHHHHHhCCCeEEecCCCCccccCCCCC-EEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 655556666667776631 1344 344433 34566666 4479999999864
No 44
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=96.60 E-value=0.00078 Score=62.42 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=42.0
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEee-C--CcEEEEEEEEC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVI-N--GSYTKLGFYDT 71 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q-~--~~~v~VG~y~~ 71 (330)
++.+.+.|++++|.|++|+++||++|++.. .+.|.|++ + |+++.+..|.+
T Consensus 298 ~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~ 351 (356)
T 3ipc_A 298 PEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSH 351 (356)
T ss_dssp HHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC---
T ss_pred HHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEecccc
Confidence 457888999999999999999999999875 78999999 4 89998887754
No 45
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=96.51 E-value=0.0027 Score=59.08 Aligned_cols=128 Identities=12% Similarity=0.018 Sum_probs=87.2
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|.+++.++... ++....-++++|++++|++-.+ .|.+++++..|+++++..+...+-..+.......++++.+|.
T Consensus 6 i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 84 (364)
T 3lop_A 6 ISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGI-NGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVGTA 84 (364)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCCHH
T ss_pred EEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCCCH
Confidence 46788877765432 2344567899999999988665 499999999999999988877765555543444444566665
Q ss_pred eeeehhh--hhhcccceeecc---------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 228 VCTTVAE--AAKMWNLVVKKV---------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~--~~~~w~~~~~~~---------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
.+..++. ....+++|.... +++ .+++.+ ...+++.+...+|++++.++..
T Consensus 85 ~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~ 150 (364)
T 3lop_A 85 NVEALMREGVLAEARLPLVGPATGASSMTTDPL-VFPIKASYQQEIDKMITALVTIGVTRIGVLYQE 150 (364)
T ss_dssp HHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTT-EECCSCCHHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred HHHhhCchhhHHhcCCcEEEcccCcHhhccCCc-EEEeCCChHHHHHHHHHHHHHcCCceEEEEEeC
Confidence 5555555 556666665321 455 333332 3567788888999999998764
No 46
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=96.49 E-value=0.004 Score=57.55 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=87.1
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|.+++.++... ++.....++++|++++|++-.++ |..++++..|+++++..+...+-..+..+....++++.+|.
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 83 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSST 83 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSSHH
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCCcH
Confidence 45777777765431 23456788999999999987765 99999999999999988777665555455555555566655
Q ss_pred eeeehhhhhhcccceeecc----------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKKV----------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~~----------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
....++.....+++|.... .++ .+++.+ +..+++.+...+|++++.++..
T Consensus 84 ~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (358)
T 3hut_A 84 VSMAAGSIYGKEGMPQLSPTAAHPDYIKISPW-QFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVT 148 (358)
T ss_dssp HHHHHHHHHHHHTCCEEESSCCCGGGTTSCTT-EEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred HHHHHHHHHHHCCCcEEecCCCCcccccCCCe-EEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 5444455555666665321 244 333333 3566777777799999998743
No 47
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=96.48 E-value=0.0023 Score=60.36 Aligned_cols=127 Identities=9% Similarity=0.009 Sum_probs=86.1
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCC-CCc--eEEEEeecCCcCCchhHHHHHHhhhccccEEEEeec
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLL-PGF--KLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAG 224 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll-~gf--~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~ 224 (330)
+.+|.++++++... ++....-++++|+++||++-.++ .|. +++++..|+++++..+...+-..+..+....++++
T Consensus 5 i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG~- 83 (391)
T 3eaf_A 5 INVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIGW- 83 (391)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEEC-
T ss_pred EEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEEc-
Confidence 46788888776543 24456778999999999987665 788 99999999999998888777666634444444443
Q ss_pred ccceeeehhhhhhcccceeec--------ccCceEEeeeh-----hHHHHHHHHH-hcceEeeccee
Q psy8319 225 CSTVCTTVAEAAKMWNLVVKK--------VEPWKLYTMVT-----GLLSIDLVIL-LCWQFYDPLQR 277 (330)
Q Consensus 225 cs~~~~~va~~~~~w~~~~~~--------~~~~~l~~~v~-----~~~~v~li~~-~~W~~v~~~~~ 277 (330)
+|..+..++.....+++|... ..|+ .+++.+ +..+++.+.. ++|++++.++.
T Consensus 84 ~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 149 (391)
T 3eaf_A 84 GTADTEKLSDQVDTDKITYISASYSAKLLVKPF-NFYPAPDYSTQACSGLAFLASEFGQGKLALAYD 149 (391)
T ss_dssp CHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTT-EECSSCCHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CcHHHHHHHHHHhhcCCeEEecccchhhcCCCc-EEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 555444444555556666532 2455 344433 2345566666 69999999987
No 48
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=96.46 E-value=0.0033 Score=58.14 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=84.6
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|++++.++... ++.....++++|++++|++-.+ .|.+++++..|+++++..+...+-..+. +....++++.+|.
T Consensus 3 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~ 80 (356)
T 3ipc_A 3 VVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANSG 80 (356)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSSHH
T ss_pred EEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCCcH
Confidence 35677777655432 2345677899999999998665 7999999999999999888776655555 4444455566665
Q ss_pred eeeehhhhhhcccceeec-------c----cCceEEeeeh-----hHHHHH-HHHHhcceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKK-------V----EPWKLYTMVT-----GLLSID-LVILLCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~-------~----~~~~l~~~v~-----~~~~v~-li~~~~W~~v~~~~~~ 278 (330)
.+..++.....+++|... + +++ .+++.+ +..+++ ++..++|++++.++..
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~ 147 (356)
T 3ipc_A 81 VSIPASEVYAENGILEITPAATNPVFTERGLWN-TFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDK 147 (356)
T ss_dssp HHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTT-EEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECS
T ss_pred HHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCc-EEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 555555556666776532 1 255 344433 345566 4445699999998763
No 49
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=96.44 E-value=0.0031 Score=58.45 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=86.9
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|.+++.++... ++.....++++|++++|.. ..|.+++++..|++|++..+...+-..+..+....++++.||.
T Consensus 7 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~---i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~ 83 (368)
T 4eyg_A 7 FKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDT---VAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITP 83 (368)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSE---ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred EEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCC---CCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccH
Confidence 56788888765432 2345677899999999853 5799999999999999988877776665534444455576666
Q ss_pred eeeehhhhhhcccceeecc----------cCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKKV----------EPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~~----------~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
.+..++.....+++|.... +++.++.... +..+++.+...+|++++.++.+
T Consensus 84 ~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (368)
T 4eyg_A 84 AALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSD 148 (368)
T ss_dssp HHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred HHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6555556666667765321 4553333322 3567788888899999998753
No 50
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=96.44 E-value=0.0061 Score=56.46 Aligned_cols=50 Identities=18% Similarity=0.372 Sum_probs=43.3
Q ss_pred HHHHHHHHhcceEEeeeeeEEEc-cCCCcceeEEEEEee--CCcE--EEEEEEEC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFS-SQGDRIALTQIEQVI--NGSY--TKLGFYDT 71 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd-~nGdr~~~y~I~q~q--~~~~--v~VG~y~~ 71 (330)
++.+.+.|++++|.|++|+++|| ++|++...+.|.|++ +|++ +.+|.|+.
T Consensus 305 ~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 305 GDSLIAAMKGMKWESPRGPISIDPETRDIVQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp HHHHHHHHTTCEEEETTEEEEECTTTCCEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCcccCCCCeEECcccCCcccceEEEEEEecCCeEEEEEeecccc
Confidence 56888999999999999999999 889998899999998 7765 66777763
No 51
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=96.14 E-value=0.0089 Score=55.71 Aligned_cols=128 Identities=14% Similarity=0.064 Sum_probs=88.0
Q ss_pred hhhhhhhhccccccc--ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 149 MLVGIAFCMSLNFNL--PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 149 iliG~ll~~~~~~~~--~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
+.+|.+++.++.... +.....++++|++++|.. ..|.+++++..|++|++..+...+-..+..+....++++.+|
T Consensus 5 i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~gg---i~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s 81 (375)
T 3i09_A 5 VKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGK---VNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGTNS 81 (375)
T ss_dssp EEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSE---ETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSCH
T ss_pred eEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCC---CCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCCCc
Confidence 467888887776532 445778999999999532 358999999999999999888777666653545545557666
Q ss_pred ceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319 227 TVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT 279 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~ 279 (330)
..+..++.....+++|... .+|+.++.... +..+++.+...+|++++.++.+.
T Consensus 82 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~ 150 (375)
T 3i09_A 82 ATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADY 150 (375)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEeccc
Confidence 6655556666666666522 14453333322 34667788888999999987643
No 52
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=96.14 E-value=0.0068 Score=56.72 Aligned_cols=127 Identities=12% Similarity=0.046 Sum_probs=88.2
Q ss_pred hhhhhhhhccccccc--ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 149 MLVGIAFCMSLNFNL--PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 149 iliG~ll~~~~~~~~--~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
+.+|.++++++.... +.....++++|+|++|.. ..|.+++++..|++|++..+...+-..+..+....++++.+|
T Consensus 7 i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~gg---i~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s 83 (379)
T 3n0w_A 7 VTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGK---ALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVVNS 83 (379)
T ss_dssp CEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTE---ETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECCCH
T ss_pred EEEEEEeCCccccccccCHHHHHHHHHHHHHhcCC---CCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCCCc
Confidence 568888888776532 445678899999999633 368999999999999998888777666653444445557666
Q ss_pred ceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319 227 TVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
..+..++.....+++|... .+|+.++.... +..+++.+...+|++++.++.+
T Consensus 84 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (379)
T 3n0w_A 84 GTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPD 151 (379)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred HHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 6665556666667776522 14453333322 3466777888899999998764
No 53
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=95.85 E-value=0.0085 Score=56.22 Aligned_cols=128 Identities=4% Similarity=-0.116 Sum_probs=83.1
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.||.++++++... .+.....++++|++++|++-.+. |.+++++..|+++++..+...+-..+.......++++ +|.
T Consensus 8 i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig~-~s~ 85 (392)
T 3lkb_A 8 VTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLSY-ATG 85 (392)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEEC-CHH
T ss_pred eEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEeC-CcH
Confidence 56788888766542 23456778999999999886665 9999999999999998887776665554233333343 444
Q ss_pred eeeehhhhhhcccceeec-----------ccCceEEeeeh----hHHHHHHHHH-hcceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT----GLLSIDLVIL-LCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~----~~~~v~li~~-~~W~~v~~~~~~ 278 (330)
.+..........++|... .+++.++.... +..+++.+.. ++|++++.++..
T Consensus 86 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~ 152 (392)
T 3lkb_A 86 ANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHP 152 (392)
T ss_dssp HHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECS
T ss_pred HHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 443444444555565522 23443333332 2455666665 599999998764
No 54
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=95.69 E-value=0.0069 Score=55.86 Aligned_cols=44 Identities=9% Similarity=0.057 Sum_probs=36.2
Q ss_pred HHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEE
Q psy8319 27 AAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYD 70 (330)
Q Consensus 27 ~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~ 70 (330)
+.+...+|.|+||.++||+||+......+.|+++|++++|...+
T Consensus 280 ~~~~~~~f~G~tG~i~fd~~G~~~r~l~~~~~~~G~~vpv~d~~ 323 (327)
T 3ckm_A 280 RQVPGYRLSGLTGILSADTNCNVERDMTWYQYQDGAIVPVVDHH 323 (327)
T ss_dssp HHSTTCCEEETTEEEEECTTCBEEEECEEEEEETTEEEECC---
T ss_pred cCCCCCCceeceEEEEECCCCCCccccEEEEEECCEEEEccccc
Confidence 45567899999999999999997777788999999999988664
No 55
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=95.63 E-value=0.012 Score=53.93 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=80.6
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|.+++.++... ++.....++++|+++||++-.+ .|++++++..|+++++..+...+-..+- +....++++.||.
T Consensus 3 i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~ 80 (346)
T 1usg_A 3 IKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVN-DGIKYVIGHLCSS 80 (346)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEECCSSHH
T ss_pred EEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHh-CCCCEEEcCCCcH
Confidence 34666666644321 2334567899999999998766 7999999999999998877666544443 3333344566655
Q ss_pred eeeehhhhhhcccceeecc-----------cCceEEeeeh-----hHHHHHHHH-HhcceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKKV-----------EPWKLYTMVT-----GLLSIDLVI-LLCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~~-----------~~~~l~~~v~-----~~~~v~li~-~~~W~~v~~~~~~ 278 (330)
.+..+.+....+++|.... +++ ++++.+ +..+++.+. .++|++++.++..
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~ 147 (346)
T 1usg_A 81 STQPASDIYEDEGILMISPGATNPELTQRGYQH-IMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDK 147 (346)
T ss_dssp HHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSS-EEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred HHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCc-EEeccCChHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4444445555566665321 234 344433 345667764 4699999988763
No 56
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=95.42 E-value=0.0091 Score=55.40 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=85.0
Q ss_pred hhhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 148 IMLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 148 ~iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
.+.+|.+++.++... ++.....++++|++++| ....|++++++..|+++++..+...+-..+..+....++++.+|
T Consensus 16 ~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n---g~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s 92 (375)
T 4evq_A 16 ALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG---GKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVHS 92 (375)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT---TEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSSH
T ss_pred CeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC---CCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCcc
Confidence 367888888765432 23456778999999998 34679999999999999998877666544443344445556665
Q ss_pred ceeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 227 TVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 227 ~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
......+.....+++|... .+++ .+++.+ +..+++.+...+|++++.++.+
T Consensus 93 ~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 160 (375)
T 4evq_A 93 GVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPN-VFRTSFANGQIGRATGDAMIKAGLKKAVTVTWK 160 (375)
T ss_dssp HHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTT-EEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred HHHHHHHHHHHHcCceEEecCCCChhhcccCCCCC-EEEeeCChHhHHHHHHHHHHHcCCcEEEEEecC
Confidence 5544445555566666531 1455 334333 3567788888899999998754
No 57
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=95.27 E-value=0.019 Score=53.86 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=40.9
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccC-CCcceeEEEEEe-eCCcEEEEEEEE
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQ-GDRIALTQIEQV-INGSYTKLGFYD 70 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~n-Gdr~~~y~I~q~-q~~~~v~VG~y~ 70 (330)
++.+.+.|++++|.|++|+++||++ ++....+.|.|+ ++|+++.|..+.
T Consensus 308 ~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~~ 358 (385)
T 1pea_A 308 VEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSP 358 (385)
T ss_dssp HHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEECS
T ss_pred HHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecCC
Confidence 5678899999999999999999984 455667889999 788888887653
No 58
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=95.15 E-value=0.0056 Score=57.48 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=42.9
Q ss_pred HHHHHHHHhcce----EE-------eeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEEC
Q psy8319 22 ADDIYAAINSTQ----FT-------GVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDT 71 (330)
Q Consensus 22 ~~~l~~~l~~vs----F~-------GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~ 71 (330)
++.+.+.|++++ |. |++|+++||++|++. ..+.+.|+++|+++.||.|..
T Consensus 313 ~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~ 374 (392)
T 3lkb_A 313 NETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFT 374 (392)
T ss_dssp HHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBC
T ss_pred HHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccc
Confidence 457888999997 98 999999999988864 468899999999999998864
No 59
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=95.06 E-value=0.017 Score=52.96 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcc-eEEeeeeeEEEccC---CCcceeEEEEEeeCCcEEEE
Q psy8319 21 IADDIYAAINST-QFTGVSGDVAFSSQ---GDRIALTQIEQVINGSYTKL 66 (330)
Q Consensus 21 ~~~~l~~~l~~v-sF~GisG~V~Fd~n---Gdr~~~y~I~q~q~~~~v~V 66 (330)
-++.+.+.|+++ +|.|++|+++||++ |++...+.+.|+++|+++.|
T Consensus 312 ~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 312 FREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVIV 361 (362)
T ss_dssp HHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred hHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEEc
Confidence 367889999999 99999999999986 55556688999999987653
No 60
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=94.36 E-value=0.036 Score=51.33 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcc-eEEeeeeeEEEccC---CCcceeEEEEEeeCCcEEEE
Q psy8319 21 IADDIYAAINST-QFTGVSGDVAFSSQ---GDRIALTQIEQVINGSYTKL 66 (330)
Q Consensus 21 ~~~~l~~~l~~v-sF~GisG~V~Fd~n---Gdr~~~y~I~q~q~~~~v~V 66 (330)
-++.+.+.|+++ +|.|++|+++||++ |+....+.+.|+++|+++.+
T Consensus 336 ~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 336 FRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK 385 (386)
T ss_dssp HHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred hHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence 367899999999 89999999999875 44455688999999987654
No 61
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=94.35 E-value=0.028 Score=52.76 Aligned_cols=50 Identities=14% Similarity=0.312 Sum_probs=42.3
Q ss_pred HHHHHHHHhcceEE--eeee-eEEEccCC-CcceeEEEEEe-eCCcEEEEEEEEC
Q psy8319 22 ADDIYAAINSTQFT--GVSG-DVAFSSQG-DRIALTQIEQV-INGSYTKLGFYDT 71 (330)
Q Consensus 22 ~~~l~~~l~~vsF~--GisG-~V~Fd~nG-dr~~~y~I~q~-q~~~~v~VG~y~~ 71 (330)
++.+.+.|++.+|. |++| +++||++| +....+.|.|+ ++|+++.|+.|..
T Consensus 317 ~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~ 371 (391)
T 3eaf_A 317 GEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEA 371 (391)
T ss_dssp HHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECC
T ss_pred HHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecC
Confidence 46778888888999 9999 99999754 55667899999 7999999999974
No 62
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=94.25 E-value=0.07 Score=49.83 Aligned_cols=50 Identities=6% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHHHhcceEEeeeeeEEEcc-CCCcceeEEEEEee-CCcEEEEEEEEC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSS-QGDRIALTQIEQVI-NGSYTKLGFYDT 71 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~~y~I~q~q-~~~~v~VG~y~~ 71 (330)
++.+.+.|++++|.|++|+++||+ +++......|.+++ ++....++.|..
T Consensus 308 ~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~ 359 (387)
T 3i45_A 308 SETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRY 359 (387)
T ss_dssp HHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEE
Confidence 567889999999999999999996 55556667787775 444578888863
No 63
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=94.02 E-value=0.077 Score=49.54 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=79.7
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|.+++.++... +.....-++++|++++|++-.+. |++++++..|+++++..+...+-..+..+....++++.+|.
T Consensus 8 ~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 86 (385)
T 1pea_A 8 PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSH 86 (385)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCSHH
T ss_pred eEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCchH
Confidence 45677766543211 23345678899999999986664 99999999999999877766554444323344444555554
Q ss_pred eeeehhhhhhcccceeecc--------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKKV--------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~~--------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
....+......+++|.... .++ .+++.. +..+++.+...+|++++.++..
T Consensus 87 ~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 149 (385)
T 1pea_A 87 TRKAVMPVVERADALLCYPTPYEGFEYSPN-IVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSD 149 (385)
T ss_dssp HHHHHHHHHHHTTCEEEECSCCCCCCCCTT-EEECSCCGGGTHHHHHHHHHTTTCSEEEEEEES
T ss_pred HHHHHHHHHHhcCceEEECCcccCccCCCC-EEEecCChHHhHHHHHHHHHHccCcEEEEEeCC
Confidence 3333344444556655321 234 333332 3567777777789999988753
No 64
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=93.75 E-value=0.05 Score=50.55 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=36.1
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVING 61 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~ 61 (330)
++.+.+.|++++|.|++|.++||+||++...+.|.|++++
T Consensus 302 ~~~l~~aL~~~~~~~~~G~~~f~~~g~~~~~~~i~~v~~~ 341 (375)
T 3i09_A 302 SDKVMAQLKKMKIDDFYAKGYIRTDGSMIHDMYLMEVKKP 341 (375)
T ss_dssp HHHHHHHHTTSCEESSSCEEEECTTSBEECCEEEEEECCG
T ss_pred HHHHHHHHhCCCccCCCCceEECCCCCeeeeeEEEEEecc
Confidence 4678899999999999999999999999888999999854
No 65
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=93.47 E-value=0.024 Score=51.98 Aligned_cols=122 Identities=10% Similarity=0.132 Sum_probs=78.4
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|.+++.++... ++.....++++|++++| |+.++++..|+++++..+...+-..+..+....++++.+|.
T Consensus 8 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 80 (362)
T 3snr_A 8 ITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTP 80 (362)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred eEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCCcH
Confidence 56788877765432 12334556677777774 78999999999999988877766655553444444565655
Q ss_pred eeeehhhhhhcccceeecc---------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKKV---------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~~---------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
....+......+++|.... .++ .+++.+ +..+++.+...+|++++.++..
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 144 (362)
T 3snr_A 81 PSVAISNVANEAQIPHIALAPLPITPERAKW-SVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYS 144 (362)
T ss_dssp HHHHHHHHHHHHTCCEEESSCCCCCTTTTTT-EEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred HHHHHHHHHHHcCccEEEecCCccccCCCCc-EEecCCChHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4444445555566665321 344 333333 3567788888899999988653
No 66
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=93.19 E-value=0.17 Score=47.13 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=37.7
Q ss_pred HHHHHHHHhcceEEeeeeeEEEccCCCc-ceeEEEEEee--CCcEE--EEEEEE
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSSQGDR-IALTQIEQVI--NGSYT--KLGFYD 70 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr-~~~y~I~q~q--~~~~v--~VG~y~ 70 (330)
++.+.+.|++++|.|++|+++||++|+. ...+.|.|++ +|+++ .++.|.
T Consensus 308 ~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v~~~~~~~~ 361 (371)
T 4f06_A 308 PDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLINRELETFK 361 (371)
T ss_dssp HHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEEEEEEEEEe
Confidence 4678899999999999999999987654 4467788887 67754 455554
No 67
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=92.73 E-value=0.038 Score=51.18 Aligned_cols=122 Identities=14% Similarity=0.101 Sum_probs=79.5
Q ss_pred hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319 149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227 (330)
Q Consensus 149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~ 227 (330)
+.+|.+++.++... ++.....++++|++++| |++++++..|+++++..+...+-..+..+....++++.+|.
T Consensus 28 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 100 (386)
T 3sg0_A 28 IKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTP 100 (386)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHH
T ss_pred eEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCch
Confidence 56788887765432 23344566777777774 78999999999999988877766655553444455566655
Q ss_pred eeeehhhhhhcccceeec-------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 228 VCTTVAEAAKMWNLVVKK-------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 228 ~~~~va~~~~~w~~~~~~-------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
....+......+++|... .+++ .+++.+ +..+++.+...+|++++.++.+
T Consensus 101 ~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 168 (386)
T 3sg0_A 101 VSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKW-VYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFS 168 (386)
T ss_dssp HHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGG-EEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred hHHHHHHHHHhcCCeEEEecCCCccccccCCCCCc-EEecCCCcHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 544445555556666521 1334 344433 3566788888899999988653
No 68
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=91.96 E-value=0.12 Score=47.92 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=33.3
Q ss_pred HhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEE
Q psy8319 29 INSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGF 68 (330)
Q Consensus 29 l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~ 68 (330)
+...+|.|+||.++||++|+..-...+.++++|+++.|-.
T Consensus 280 ~~~~~~~G~tG~l~~~~~g~~~R~l~~~~~~~G~~~~~~~ 319 (325)
T 2h4a_A 280 VPGYRLSGLTGILSADTNCNVERDMTWYQYQDGAIVPVVD 319 (325)
T ss_dssp STTCCEEETTEEEEECTTCBEEEECEEEEEETTEEEECC-
T ss_pred CCCCeeccCceeEEECCCCeEEEeechhhccCCeEEEeec
Confidence 3446899999999999999988888899999998876643
No 69
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=90.90 E-value=0.26 Score=45.79 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHHHHHHhcceEEeeeeeEEEcc-CCCcceeEEEEEeeC
Q psy8319 22 ADDIYAAINSTQFTGVSGDVAFSS-QGDRIALTQIEQVIN 60 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~~y~I~q~q~ 60 (330)
++.+.+.|++++|.|++|+++||+ +|+....+.|.|++.
T Consensus 307 ~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 307 TEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp HHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred HHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 467889999999999999999994 677777888999983
No 70
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=89.98 E-value=0.27 Score=45.62 Aligned_cols=40 Identities=8% Similarity=0.163 Sum_probs=35.4
Q ss_pred HHHHHHHHhcceEEeeeee-EEEccCCCcceeEEEEEeeCC
Q psy8319 22 ADDIYAAINSTQFTGVSGD-VAFSSQGDRIALTQIEQVING 61 (330)
Q Consensus 22 ~~~l~~~l~~vsF~GisG~-V~Fd~nGdr~~~y~I~q~q~~ 61 (330)
++.+.+.|++++|.|..|. ++||+||++...+.|.|++++
T Consensus 305 ~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~~~~~i~~~~~~ 345 (379)
T 3n0w_A 305 PQKVFAYLKTIKFDDAVTRHGTLRPGGRLVRDMYLVRAKKP 345 (379)
T ss_dssp HHHHHHHHTTCCBCSSSCCSBEECTTSBEECCEEEEEECCG
T ss_pred HHHHHHHHhcCCccccCCCceeECCCCCcccceEEEEEEch
Confidence 4678899999999999984 999999999999999999854
No 71
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=88.76 E-value=0.89 Score=42.49 Aligned_cols=107 Identities=9% Similarity=0.055 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhcCCCCCCCceEEEE-eecCCcCCchhHHHHHHhhhccccEEEEeecccce-eee--hhhhhhccccee
Q psy8319 168 EPAAKLALEDVNNATDLLPGFKLQLH-WNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV-CTT--VAEAAKMWNLVV 243 (330)
Q Consensus 168 ~~~~~~A~~~iN~~~~ll~gf~l~l~-~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~-~~~--va~~~~~w~~~~ 243 (330)
..+.+-|++..|. +...++++.+ ....++||..+...+-+.+........+++.+|.. +.. ++..+..+++|+
T Consensus 17 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~ 93 (364)
T 3qel_B 17 EVAIKDAHEKDDF---HHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPI 93 (364)
T ss_dssp HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCE
T ss_pred hhhhccccCcccc---ccCCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCE
Confidence 4444555666652 2344677775 66678899888777767665433333333333322 212 455666777776
Q ss_pred e-------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319 244 K-------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 244 ~-------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
. ..+|+ ++++++ +.++++++.+++|+.++.++.+
T Consensus 94 IS~~at~~~~lsd~~~~p~-f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d 145 (364)
T 3qel_B 94 LGIHGGSSMIMADKDESSM-FFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTY 145 (364)
T ss_dssp EEEEGGGGSCCSSCCTTCC-EEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred EEeecCCCCcCCCcccCce-EEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeC
Confidence 2 23555 445554 3688999999999999999875
No 72
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=81.86 E-value=1.2 Score=40.85 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=34.0
Q ss_pred HHHHHHHHhcc-eEEe-eeeeEEEccCCCcc-eeEEEEEeeCC-cEEEEEE
Q psy8319 22 ADDIYAAINST-QFTG-VSGDVAFSSQGDRI-ALTQIEQVING-SYTKLGF 68 (330)
Q Consensus 22 ~~~l~~~l~~v-sF~G-isG~V~Fd~nGdr~-~~y~I~q~q~~-~~v~VG~ 68 (330)
++.+.+.|+++ +|.| .+|+++||+++.+. ....+.|+++| .+..-|+
T Consensus 309 ~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~~ 359 (364)
T 3lop_A 309 REQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVIQEGH 359 (364)
T ss_dssp HHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEEEC--
T ss_pred HHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCccccccc
Confidence 56788999999 7999 99999999876543 34578888855 3444444
No 73
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=65.59 E-value=5.8 Score=35.84 Aligned_cols=118 Identities=8% Similarity=-0.066 Sum_probs=65.6
Q ss_pred hhhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319 148 IMLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226 (330)
Q Consensus 148 ~iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs 226 (330)
++-||.++++++..- .+....-++++|++ |.+++++..|+++++..+ +...+...-..+.++|.+|
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~a---a~~~~~~~~v~~iiGp~~s 68 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLK 68 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHH---HHHHHHHcCCeEEEEcccc
Confidence 345788888877653 24445556677753 567899999999998544 3344544555556667666
Q ss_pred ceeeehhhh-hhccccee--------ecccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319 227 TVCTTVAEA-AKMWNLVV--------KKVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 227 ~~~~~va~~-~~~w~~~~--------~~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~ 278 (330)
+.+...+.. ...-.++. ....++.++.... +..+++.+..-+++++..++.+
T Consensus 69 ~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~ 133 (327)
T 3ckm_A 69 QNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQ 133 (327)
T ss_dssp HHHHHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEES
T ss_pred ccchhhHHHHHhccCceEeccCcCcccccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecC
Confidence 544322211 11111111 1123342322222 3455666666788888887764
No 74
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=32.40 E-value=22 Score=32.45 Aligned_cols=115 Identities=7% Similarity=-0.083 Sum_probs=63.9
Q ss_pred hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319 151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229 (330)
Q Consensus 151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~ 229 (330)
+|.++++++..-. +....-++++|. .|-+++++..|+++++ + ..+...+...-..+.++|.+|..+
T Consensus 3 IG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a-~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 3 IGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--V-QDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp EEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--H-HHHHHHHHHTTCCEEECCCSHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--H-HHHHHHHHHCCCCEEEeeCCHHHH
Confidence 5677777665532 334444556664 5778999999999997 3 333444444445556678776655
Q ss_pred eehhhhh-hcccceeecc--------cCc-eEEeeeh---hHHHHHHHHHhcceEeecceec
Q psy8319 230 TTVAEAA-KMWNLVVKKV--------EPW-KLYTMVT---GLLSIDLVILLCWQFYDPLQRI 278 (330)
Q Consensus 230 ~~va~~~-~~w~~~~~~~--------~~~-~l~~~v~---~~~~v~li~~~~W~~v~~~~~~ 278 (330)
..++..+ ..-++|.... .+. +.+++.. +..+++.+..-+.++++.++..
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~a~~a~~~g~k~vail~~~ 131 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQ 131 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSSCCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEES
T ss_pred HHHHhhhhccCCCcEEECCCCccccCCCCeEEEECCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 4444333 2223343111 111 2333333 3455555555677888887653
No 75
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=27.68 E-value=21 Score=26.15 Aligned_cols=43 Identities=30% Similarity=0.567 Sum_probs=25.8
Q ss_pred eeEEEEEee-----CCc-EEEEEEEECCCC----ceeec-Ccc-ccCC-CCCCCCc
Q psy8319 51 ALTQIEQVI-----NGS-YTKLGFYDTQAD----NLTWF-DRE-RWIG-GKVPQDR 93 (330)
Q Consensus 51 ~~y~I~q~q-----~~~-~v~VG~y~~~~~----~l~~~-~~i-~W~~-~~~P~s~ 93 (330)
.-|.|+=-. +|+ ...||+|++..+ .+.++ +.+ .|-+ |..|+|.
T Consensus 15 PfYrIVvadsr~~RdGr~IE~lG~YnP~~~~~~~~v~l~~eri~~Wl~~GAqptdt 70 (82)
T 3r8n_P 15 PFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDR 70 (82)
T ss_dssp CCEEEEEEETTSCTTSCEEEEEEEECTTCCSSSCCCCCCHHHHHHHHHHTCEECHH
T ss_pred CEEEEEEeecCCCCCCCceeeeeEEcCCCCCCcceEEEcHHHHHHHHHCCCccCHH
Confidence 347776544 455 478999997542 45554 333 6865 5557653
Done!