RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8319
(330 letters)
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 89.6 bits (222), Expect = 4e-20
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 8 GKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLG 67
+ ++ F YT+ + I A+N T F GV+G V F + G+R+ + Q + K+G
Sbjct: 341 HQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRN-GERMGTIKFTQFQDSREVKVG 399
Query: 68 FYDTQADNLTWFDRE-RWIGGKVPQDRT 94
Y+ AD L + R+ G + P+D
Sbjct: 400 EYNAVADTLEIINDTIRFQGSEPPKDDY 427
Score = 81.5 bits (201), Expect = 2e-17
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLL-A 223
PA +LA+E + N + LL + L L D+EC+ G Y+ + P LM+
Sbjct: 34 RGVLPAVELAIEQIRNES-LLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGG 92
Query: 224 GCSTVCTTVAEAAKMWNLVV 243
C +V + +AE+ + WNLV
Sbjct: 93 VCPSVTSIIAESLQGWNLVQ 112
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 80.2 bits (197), Expect = 6e-17
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 151 VGIAFCMSLNFNLPFA---CEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-----CEPG 202
V + ++ N + P++ PA +LAL V DLLPG+ +++ SE C
Sbjct: 5 VAVVLPLT-NTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDT 63
Query: 203 LGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVV 243
+L + + + L GC V W + +
Sbjct: 64 AAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPL 104
Score = 59.8 bits (144), Expect = 3e-10
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 23 DDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIE--QVINGSYTKLGFYDTQADNLTWFD 80
++I + + F GV+G + GDR + G++ + Y+ + L
Sbjct: 346 ENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVS 405
Query: 81 RER--WIGGKVPQDR 93
+ W G P D
Sbjct: 406 EHKLYWPLGYPPPDV 420
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 77.5 bits (190), Expect = 4e-16
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 151 VGIAFCMSLNFNLPFA---CEPAAKLALEDVNNAT----DLLPGFKLQLHWNDSECEPGL 203
+ + + + + F+ PA + AL V L PG + Q+ + DS+C
Sbjct: 10 IEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRA 69
Query: 204 GASVMYNLLYNNPQKLMLLAG--CSTVCTTVAEAAKMWNLVV 243
S++ + K L+ G C VA A W+L +
Sbjct: 70 LFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPM 111
Score = 66.7 bits (162), Expect = 2e-12
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 24 DIYAAINSTQFTGVSGDVAFSSQGDRIA---LTQIEQVINGSYTKLGFYDTQADNLTWFD 80
I + F G++G V+ + GDR + + V G+ +G Y +
Sbjct: 344 KIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMRP 403
Query: 81 RER--WIGGKVPQDRTQI 96
+ W K+ D +I
Sbjct: 404 NVKYPWGPLKLRIDENRI 421
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 59.7 bits (144), Expect = 3e-10
Identities = 12/74 (16%), Positives = 19/74 (25%)
Query: 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227
E A + A+ +N LLP L AS + + S+
Sbjct: 23 ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSS 82
Query: 228 VCTTVAEAAKMWNL 241
V +
Sbjct: 83 SANAVQSICNALGV 96
Score = 43.9 bits (103), Expect = 4e-05
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 5 KKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAF-SSQGDRIALT-QIEQVINGS 62
+ +L+ + + I + G++G + F + G R + +
Sbjct: 308 QMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEG 367
Query: 63 YTKLGFYDTQAD-NLTWFDRERW 84
K+G +D + N+T + +
Sbjct: 368 LEKIGTWDPASGLNMTESQKGKL 390
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 57.5 bits (138), Expect = 2e-09
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGC 225
A LA E +N ++ ++++ + + + + + +L G
Sbjct: 20 GERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVL--GP 77
Query: 226 STVCTTVAEAAKMWNL 241
S+ + + + +
Sbjct: 78 SSSPASASTVSHICGE 93
Score = 49.0 bits (116), Expect = 1e-06
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 9 KTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLG 67
K L + + + ++ G++G V F+S+G R T +I + + ++G
Sbjct: 311 KPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIG 370
Query: 68 FYDTQADNLTWFDRERWIGGKVPQ 91
+ + L I VP+
Sbjct: 371 VWYSN-RTLAMNATTLDILELVPR 393
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 44.7 bits (105), Expect = 2e-05
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLGFYD 70
DI A+ +F G++G+V F+ +G R T + ++ + K+G+++
Sbjct: 318 GQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWN 369
Score = 42.8 bits (100), Expect = 9e-05
Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 6/74 (8%)
Query: 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227
A + AL + LLP + ++ +DS + +
Sbjct: 25 HAAFRFALSQLTEPPKLLPQIDI-VNISDSFE----MTYRFCSQFSKGVYAI-FGFYERR 78
Query: 228 VCTTVAEAAKMWNL 241
+ ++
Sbjct: 79 TVNMLTSFCGALHV 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 6e-05
Identities = 58/383 (15%), Positives = 104/383 (27%), Gaps = 108/383 (28%)
Query: 16 YTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKL--------- 66
+ +EI D I + ++ T S+ + + +E+V+ +Y L
Sbjct: 46 LSKEEI-DHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 67 ------GFYDTQADNLTWFDRERWIGGKVP--QDRTQIRKVLRTISVP--LVIC-M---- 111
Y Q D L + D + + V Q ++R+ L + ++I +
Sbjct: 104 QPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 112 --WTVATV----GILFAVGLIIF--NI--CYRHRRVIASSHPVCNTIMLVGIAFCMSLNF 161
W V + + IF N+ C V+ + I + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSS 221
Query: 162 NLPFACE---------------PAAKLALEDVNNATDLLPGFKLQ----LHWNDSECEPG 202
N+ L L +V NA F L L +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDF 280
Query: 203 LGASVMYNLLYNNPQK-------LMLLAGC-STVCTTVAEAAKMWNLVVKKVEPWKLYTM 254
L A+ ++ ++ LL + P +L ++
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-------LTTNPRRL-SI 332
Query: 255 VTGLLSIDLVILLCWQFY-----DPLQRITENFPLETPPKSSADDIKISPE-LEHCESRN 308
+ + L W + D L I I+ S LE E R
Sbjct: 333 IAESIRDGLAT---WDNWKHVNCDKLTTI----------------IESSLNVLEPAEYRK 373
Query: 309 NNIWYGFFNRHLQVL--GVKIPE 329
+ L V IP
Sbjct: 374 M---F----DRLSVFPPSAHIPT 389
Score = 41.4 bits (96), Expect = 4e-04
Identities = 42/310 (13%), Positives = 89/310 (28%), Gaps = 109/310 (35%)
Query: 40 DV-------AFSSQGDRIALT----QIEQVINGSYTK--------LGFYDTQADNLTWFD 80
+V AF+ +I LT Q+ ++ + T + + +L
Sbjct: 252 NVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--L- 307
Query: 81 RERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIAS 140
+++ + ++ P + + + GL ++ ++H
Sbjct: 308 -LKYLDCRPQDLPREVLTTN-----PRRLSI-----IAESIRDGLATWDN-WKHVNCDKL 355
Query: 141 SHPVCNTIMLVGIAFCMSLNFNLPFACEPA------AKLAL--EDVNNATDLLPGFKLQL 192
+ SLN L EPA +L++ + +P L L
Sbjct: 356 TT-----------IIESSLN-VL----EPAEYRKMFDRLSVFPPSAH-----IPTILLSL 394
Query: 193 HWNDSECEPGLGASVMYNLLYNNPQKLM-LLAGCSTVCTTVAEAAKMWNLVVKKVEPWKL 251
W D ++ ++ L S LV K+ + +
Sbjct: 395 IWFDVI--------------KSDVMVVVNKLHKYS--------------LVEKQPKESTI 426
Query: 252 YTMVTGLLSIDLVILL-CWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNN 310
+ SI L + + Y + I +++ P +DD+ +
Sbjct: 427 S-----IPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYL--------DQ 471
Query: 311 IWYGFFNRHL 320
+Y HL
Sbjct: 472 YFYSHIGHHL 481
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 42.9 bits (100), Expect = 8e-05
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 23 DDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLGFYD 70
DI A+ Q G++G++ F + G R T + ++ K G+++
Sbjct: 324 IDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWN 372
Score = 39.0 bits (90), Expect = 0.001
Identities = 8/75 (10%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
Query: 168 EPAAKLALEDVN-NATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS 226
A + A++ N N F L H + + + + ++ +
Sbjct: 20 HSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79
Query: 227 TVCTTVAEAAKMWNL 241
T+ +
Sbjct: 80 MSMNTLTSFCGALHT 94
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 41.7 bits (97), Expect = 2e-04
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 23 DDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLGFYD 70
+I A+ Q G+SG++ F G RI T I ++ K+G++
Sbjct: 318 VEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 366
Score = 28.2 bits (62), Expect = 3.6
Identities = 5/73 (6%), Positives = 16/73 (21%), Gaps = 5/73 (6%)
Query: 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227
A ++ + + + L L +S + + +
Sbjct: 17 YSAFRVGMVQFSTSEFRLTPHIDNLEVANS----FAVTNAFCSQFSRGVYA-IFGFYDKK 71
Query: 228 VCTTVAEAAKMWN 240
T+ +
Sbjct: 72 SVNTITSFCGTLH 84
>3i45_A Twin-arginine translocation pathway signal protei; structural
genomics; 1.36A {Rhodospirillum rubrum}
Length = 387
Score = 38.9 bits (91), Expect = 0.001
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
+LA+E +N A LL G L++ D +PG + LL + LAG
Sbjct: 27 GWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTR--HGVHALAGT--FL 82
Query: 230 TTVAEAA 236
+ V A
Sbjct: 83 SHVGLAV 89
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor
family ligand binding region, structural genomics; HET:
MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Length = 374
Score = 37.4 bits (87), Expect = 0.004
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
+ LE T L G K+ + D + +P L + + + + G
Sbjct: 27 GLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQD--DGADIAIGT--SS 82
Query: 230 TTVAEAA 236
+ A A
Sbjct: 83 SAAALAD 89
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY
crystallography, protein structure, ABC transport
systems, transport protein; 1.53A {Escherichia coli}
SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A
1z17_A 1z18_A 2liv_A
Length = 346
Score = 35.7 bits (83), Expect = 0.016
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 23 DDIYAAINSTQFTGVSGDVAFSSQGDRI--ALTQIEQVINGSYT 64
+ + + V G + + +GD + +GS T
Sbjct: 300 LALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSST 343
Score = 35.3 bits (82), Expect = 0.023
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAG--CST 227
A+ A++D+N A + G KL D C+P +V N + N + + G CS+
Sbjct: 25 GARQAIKDIN-AKGGIKGDKLVGVEYDDACDPKQAVAV-ANKIVN--DGIKYVIGHLCSS 80
Query: 228 VC---TTVAEAAKM 238
+ + E +
Sbjct: 81 STQPASDIYEDEGI 94
>3td9_A Branched chain amino acid ABC transporter, peripl amino
acid-binding protein; leucine binding, structural
genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Length = 366
Score = 35.3 bits (82), Expect = 0.023
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 23 DDIYAAINSTQ-FTGVSGDVAFSSQGDRIALTQIEQVINGSYT 64
+ I I T+ F G SG + GD I + V NGS
Sbjct: 313 EKIAEEIRKTRNFNGASGIINIDENGDAIKSVVVNIVKNGSVD 355
Score = 29.9 bits (68), Expect = 1.1
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAG--CST 227
++A E+ + G +++L D+ E A+ + + +K++ + G S
Sbjct: 39 GIQIAHEEKPT----VLGEEVELVLLDTRSEKTEAANAAARAI--DKEKVLAIIGEVASA 92
Query: 228 VC---TTVAEAAKM 238
+AE K+
Sbjct: 93 HSLAIAPIAEENKV 106
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap
domain, transport protein; 1.30A {Agrobacterium
tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Length = 356
Score = 34.6 bits (80), Expect = 0.032
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 23 DDIYAAINSTQFTGVSGDVAFSSQGDR----IALTQIEQVINGSYTKL 66
+ + A+ F G+++F +GD + + ++ +G +T +
Sbjct: 299 EKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYI 346
Score = 34.2 bits (79), Expect = 0.046
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAG--CST 227
A+ A +D+N A + G ++++ D +P G SV + + + G S
Sbjct: 25 GAEQAAKDIN-AAGGINGEQIKIVLGDDVSDPKQGISVANKFV---ADGVKFVVGHANSG 80
Query: 228 VC---TTVAEAAKM 238
V + V +
Sbjct: 81 VSIPASEVYAENGI 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.049
Identities = 46/214 (21%), Positives = 71/214 (33%), Gaps = 71/214 (33%)
Query: 9 KTLKSFTYTNKEIADDIY----AAINSTQFT-----GVSGDVA-FS---SQGDRIALTQI 55
KT K F N+ + +++TQFT + A F S+G L
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME--KAAFEDLKSKG----LIPA 1755
Query: 56 EQVING-SYTKLGFYD---TQADNLTWFD-----RERWIGGK-----VPQDRTQIRKVLR 101
+ G S LG Y + AD ++ R G VP+D R
Sbjct: 1756 DATFAGHS---LGEYAALASLADVMSIESLVEVVFYR---GMTMQVAVPRD-ELGRSNYG 1808
Query: 102 TISV-PLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLN 160
I++ P VA A+ ++ + R T LV I N
Sbjct: 1809 MIAINP-----GRVAASFSQEALQYVVERVGKR-------------TGWLVEIV-----N 1845
Query: 161 FNLP---FACEPAAKLALEDVNNATDLLPGFKLQ 191
+N+ + A L ++ T++L KLQ
Sbjct: 1846 YNVENQQYVA--AGD--LRALDTVTNVLNFIKLQ 1875
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 33.6 bits (76), Expect = 0.076
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 23 DDIYAAINSTQF-TGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLGFYDTQADNLTWFD 80
+ S+++ GV+G + F+ GDR I + N ++G ++ D
Sbjct: 319 PLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNGSYIIQN--D 376
Query: 81 RE-RWIGG 87
R+ W GG
Sbjct: 377 RKIIWPGG 384
Score = 29.3 bits (65), Expect = 1.7
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 6/79 (7%)
Query: 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAG--- 224
E + A+ N +LQ A + L ++ +L++
Sbjct: 18 EQIFREAVNQANKRH-FTRKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPA 76
Query: 225 --CSTVCTTVAEAAKMWNL 241
T ++ A + +
Sbjct: 77 PTDHLTPTPISYTAGFYRI 95
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular
ligand-binding receptor,transport protein; 1.93A
{Rhodospirillum rubrum atcc 11170}
Length = 358
Score = 33.4 bits (77), Expect = 0.090
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAG--CST 227
AA+L L+ N A + G + + + DS + ++ + + +++ + G ST
Sbjct: 27 AARLQLDRFN-AAGGVGGRPVDILYADSRDDADQARTIARAFVDDP--RVVGVLGDFSST 83
Query: 228 VC---TTVAEAAKM 238
V ++ M
Sbjct: 84 VSMAAGSIYGKEGM 97
Score = 30.7 bits (70), Expect = 0.66
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 23 DDIYAAINSTQ-FTGVSGDVAFSSQGDR-IALTQIEQVINGSYTKL 66
+ + A+ +T + GV+G F + + V G + +
Sbjct: 303 ESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVI 348
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.24
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 4 LKKQGKTLKSFTYTNKEIADDIYA---AINST 32
LKK +LK Y ADD A AI +T
Sbjct: 22 LKKLQASLK--LY-----ADD-SAPALAIKAT 45
Score = 27.6 bits (60), Expect = 3.7
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 158 SLNFNLPFACEPAAKLALEDVNNAT 182
SL +A + A LA+ AT
Sbjct: 28 SLK---LYADDSAPALAI----KAT 45
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A
{Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A
1qnl_A
Length = 385
Score = 31.5 bits (72), Expect = 0.31
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGC 225
+ A LA+E +N + G ++ D +P + + N + L GC
Sbjct: 26 SQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNR--GVRFLVGC 82
Query: 226 ST 227
Sbjct: 83 YM 84
>3h5l_A Putative branched-chain amino acid ABC transporter; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Ruegeria pomeroyi}
Length = 419
Score = 30.9 bits (70), Expect = 0.50
Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 3/46 (6%)
Query: 4 LKKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDR 49
G + + + + S F G G + F +
Sbjct: 319 AALAGGPGAPYDDVQNK---AVADRLRSLIFRGPVGTMRFHADTQS 361
Score = 29.0 bits (65), Expect = 2.3
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
++A +++N +L G ++L + D++ + L + L+AG +
Sbjct: 37 GIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGYNLEN 95
Query: 230 T----TVAEAAKM 238
VA A +
Sbjct: 96 GTALHDVAADAGV 108
>3n0w_A ABC branched chain amino acid family transporter, periplasmic
ligand binding protein...; receptor family ligand
binding region; HET: MSE; 1.88A {Burkholderia
xenovorans}
Length = 379
Score = 30.8 bits (70), Expect = 0.66
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
A +LA+EDV G ++L D + + + S+ + +
Sbjct: 30 AVQLAIEDVGGK---ALGQPVKLVSADYQMKTDVALSIAREWFDR--DGVDAIFDVVN-- 82
Query: 230 TTVAEAA 236
+ A A
Sbjct: 83 SGTALAI 89
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 30.9 bits (69), Expect = 0.73
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 24 DIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLGFY 69
+I A+ Q G+SG++ F G RI T I ++ K+G++
Sbjct: 319 EIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYW 365
>4evq_A Putative ABC transporter subunit, substrate-bindi component;
structural genomics, PSI-biology, midwest center for
structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas
palustris} PDB: 4evr_A
Length = 375
Score = 30.4 bits (69), Expect = 0.94
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGF 68
++ AA+ + F G S+ + + + ++ G LG
Sbjct: 314 RKELNAAMAAASFASPRGPFKLSAAHNPVQNFYLRELKGGKSVNLGL 360
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I
periplasmic binding protein, structural genomics, JOI
for structural genomics; HET: MSE CIT; 1.80A
{Burkholderia mallei}
Length = 375
Score = 29.2 bits (66), Expect = 1.7
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
A K+A+ D + G +++ + D + + + AS + L LL G +
Sbjct: 28 AIKMAVADFGGK---VNGKPIEVVYADHQNKADIAASKAREWMDR--GGLDLLVGGTN-- 80
Query: 230 TTVAEA 235
+ A +
Sbjct: 81 SATALS 86
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 29.3 bits (66), Expect = 1.8
Identities = 8/67 (11%), Positives = 17/67 (25%), Gaps = 6/67 (8%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
A + + N L+PG D + + + + + L +
Sbjct: 30 AVEDYCKWAN-ERKLVPGVVFNCVVRDDQYNNANTQRF-FEEAVDRFKIPVFL----SYA 83
Query: 230 TTVAEAA 236
T
Sbjct: 84 TGANLQL 90
>3sg0_A Extracellular ligand-binding receptor; structural genomics,
PSI-biology; HET: 173; 1.20A {Rhodopseudomonas
palustris} PDB: 4dqd_A*
Length = 386
Score = 28.1 bits (63), Expect = 3.8
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
+++ G K+ D E +P A LL K+ +L G +
Sbjct: 50 TVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEE--KVDVLIG--SSL 98
Query: 230 TTVAEAA 236
T V+
Sbjct: 99 TPVSLPL 105
>3cmu_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 4.20A
{Escherichia coli}
Length = 2050
Score = 27.7 bits (62), Expect = 6.2
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 7 QGK-TLKSFTYTNKEIADDIYAAI----------------NSTQFTGVSGDVAFSSQGDR 49
QGK ++ N E A +I + + + +S +
Sbjct: 1668 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSGSSTGSMSAIDENKQKALA 1727
Query: 50 IALTQIE-QVINGSYTKLG 67
AL QIE Q GS +LG
Sbjct: 1728 AALGQIEKQFGKGSIMRLG 1746
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 27.1 bits (59), Expect = 8.0
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 25 IYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQV-INGSYTKLGFYD 70
+ + + F G D++FS G ++ I + + ++G +
Sbjct: 305 LNRYLINVTFEG--RDLSFSEDGYQMHPKLVIILLNKERKWERVGKWK 350
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 27.1 bits (60), Expect = 8.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDS 197
A AL+ +N+ +LLP L D+
Sbjct: 49 AMLYALDQINSDPNLLPNVTLGARILDT 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.431
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,059,733
Number of extensions: 291028
Number of successful extensions: 745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 49
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.0 bits)