RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8319
(330 letters)
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 425
Score = 67.9 bits (164), Expect = 3e-13
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 151 VGIAFCMSLNFNLPFA---CEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-----CEPG 202
V + ++ N + P++ PA +LAL V DLLPG+ +++ SE C
Sbjct: 5 VAVVLPLT-NTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDT 63
Query: 203 LGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVK 244
+L + + + L GC V W + +
Sbjct: 64 AAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLL 105
Score = 64.8 bits (156), Expect = 3e-12
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQV--INGSYTKLGFYDTQADNLTWF 79
++I + + F GV+G + GDR + + G++ + Y+ + L
Sbjct: 345 GENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAV 404
Query: 80 DRE--RWIGGKVPQDR 93
W G P D
Sbjct: 405 SEHKLYWPLGYPPPDV 420
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 401
Score = 63.2 bits (152), Expect = 7e-12
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 153 IAFCMSLNFNLPFA---CEPAAKLALEDVNNA----TDLLPGFKLQLHWNDSECEPGLGA 205
+ + + + F+ PA + AL V L PG + Q+ + DS+C
Sbjct: 10 VLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALF 69
Query: 206 SVMYNLLYNNPQKLMLLAG--CSTVCTTVAEAAKMWNLV 242
S++ + K L+ G C VA A W+L
Sbjct: 70 SLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLP 108
Score = 50.5 bits (119), Expect = 1e-07
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIA---LTQIEQVINGSYTKLGFYDTQADNLT 77
I + F G++G V+ + GDR + + V G+ +G Y +
Sbjct: 340 GGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFE 398
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 40.7 bits (94), Expect = 2e-04
Identities = 10/60 (16%), Positives = 17/60 (28%)
Query: 156 CMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNN 215
C + A L+ +N LLP L DS + + ++
Sbjct: 32 CGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDS 91
Score = 34.9 bits (79), Expect = 0.010
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 25 IYAAINSTQFTGVSGD-VAFSSQGDRIALTQIEQVINGS-----YTKLGFYDTQADNL 76
+ + + F GVSG+ V F +GD I + Y +G + N+
Sbjct: 415 LLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNI 472
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 346
Score = 39.4 bits (90), Expect = 4e-04
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
A+ A++D+N + G KL D C+P +V N + N+ K ++ CS+
Sbjct: 25 GARQAIKDINAKGGIK-GDKLVGVEYDDACDPKQAVAV-ANKIVNDGIKYVIGHLCSSST 82
Query: 230 TTVAEAAKMWN 240
++ +
Sbjct: 83 QPASDIYEDEG 93
Score = 35.5 bits (80), Expect = 0.006
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVI-NGSYT 64
+ + + V G + + +GD + Q +GS T
Sbjct: 299 PLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSST 343
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the
amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 373
Score = 39.3 bits (90), Expect = 5e-04
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
A LA+E +N + G ++ D +P + + N + ++ S
Sbjct: 24 GALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTR 82
Query: 230 TTVAEAAKMWNLVVKKVEPW 249
V + + ++ P+
Sbjct: 83 KAVMPVVERADALLCYPTPY 102
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 287
Score = 29.0 bits (65), Expect = 0.84
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 262 DLVILLCWQFYDPLQRITENFPLETPPKSSAD 293
+ V L +Y + +F E +S+A
Sbjct: 160 ESVAQLQAWWY---KADPNDFTYERRKESAAY 188
>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 25.7 bits (56), Expect = 4.1
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 35 TGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGF 68
+G SGD+ + + L +++ S KLG
Sbjct: 3 SGSSGDIHQEMDREELELEEVDLYRMNSQDKLGL 36
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S
{Streptomyces lividans [TaxId: 1916]}
Length = 94
Score = 25.1 bits (55), Expect = 4.5
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 130 ICYRHRRVIASSHPVCNTIMLVGIA 154
HR+ IA +H C M +
Sbjct: 33 AAEDHRQGIARNHYDCGYEMHTCLG 57
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus
influenzae [TaxId: 727]}
Length = 317
Score = 26.5 bits (57), Expect = 4.5
Identities = 3/34 (8%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 27 AAINSTQFTGVSGDVAFSSQGD---RIALTQIEQ 57
+ + +G++G ++ + + + Q +
Sbjct: 278 RQVPGYRLSGLTGILSADTNCNVERDMTWYQYQD 311
>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia
coli [TaxId: 562]}
Length = 95
Score = 24.8 bits (54), Expect = 6.7
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 121 FAVGLIIFNICYRHRRVIASSHPVCN 146
F +G + + + V+ PV +
Sbjct: 4 FGIGQQVRHSLLGYLGVVVDIDPVYS 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.431
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,249,314
Number of extensions: 56164
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 15
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)