Query psy832
Match_columns 80
No_of_seqs 174 out of 1595
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:41:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 99.8 5.6E-19 1.2E-23 117.3 4.5 76 4-79 154-234 (258)
2 COG1126 GlnQ ABC-type polar am 99.7 7.7E-18 1.7E-22 109.6 5.6 71 4-74 152-226 (240)
3 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 5.3E-17 1.1E-21 107.7 5.1 74 4-77 155-231 (254)
4 COG0444 DppD ABC-type dipeptid 99.7 6.4E-17 1.4E-21 109.7 5.4 71 4-74 169-244 (316)
5 COG1136 SalX ABC-type antimicr 99.7 3E-16 6.6E-21 102.7 6.9 59 4-62 158-219 (226)
6 COG1122 CbiO ABC-type cobalt t 99.7 2.3E-16 5.1E-21 103.7 6.1 71 4-74 154-229 (235)
7 cd03275 ABC_SMC1_euk Eukaryoti 99.6 1.1E-15 2.3E-20 100.5 8.8 69 4-74 175-245 (247)
8 COG1123 ATPase components of v 99.6 1.7E-16 3.7E-21 113.8 5.2 72 3-74 169-245 (539)
9 PRK14245 phosphate ABC transpo 99.6 5.4E-16 1.2E-20 101.7 6.2 70 4-73 162-234 (250)
10 cd03219 ABC_Mj1267_LivG_branch 99.6 6.9E-16 1.5E-20 100.2 6.6 68 4-71 159-230 (236)
11 PRK09536 btuD corrinoid ABC tr 99.6 3E-16 6.5E-21 109.7 4.8 72 4-75 155-230 (402)
12 cd03260 ABC_PstB_phosphate_tra 99.6 1.2E-15 2.7E-20 98.6 7.0 59 4-62 157-217 (227)
13 COG2274 SunT ABC-type bacterio 99.6 4.3E-16 9.4E-21 114.9 5.3 70 4-73 625-696 (709)
14 cd03261 ABC_Org_Solvent_Resist 99.6 9.1E-16 2E-20 99.8 6.2 68 4-71 152-224 (235)
15 cd03246 ABCC_Protease_Secretio 99.6 1.9E-15 4.2E-20 94.6 7.3 58 4-61 112-171 (173)
16 cd03245 ABCC_bacteriocin_expor 99.6 1.8E-15 3.9E-20 97.4 7.3 59 4-62 156-215 (220)
17 PRK11174 cysteine/glutathione 99.6 8.3E-16 1.8E-20 110.6 6.3 68 4-71 501-570 (588)
18 PRK13644 cbiO cobalt transport 99.6 6.3E-16 1.4E-20 103.0 5.3 68 4-71 152-222 (274)
19 cd03218 ABC_YhbG The ABC trans 99.6 6E-16 1.3E-20 100.2 4.9 66 4-69 149-218 (232)
20 TIGR00960 3a0501s02 Type II (G 99.6 1.9E-15 4.2E-20 97.1 7.2 58 4-61 154-214 (216)
21 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 1.4E-15 3E-20 97.7 6.5 58 4-61 156-216 (218)
22 cd03225 ABC_cobalt_CbiO_domain 99.6 1.8E-15 3.9E-20 96.8 7.0 58 4-61 150-210 (211)
23 cd03252 ABCC_Hemolysin The ABC 99.6 1.1E-15 2.4E-20 99.3 6.0 67 4-70 154-222 (237)
24 cd03259 ABC_Carb_Solutes_like 99.6 2.2E-15 4.7E-20 96.7 7.1 59 4-62 146-208 (213)
25 cd03247 ABCC_cytochrome_bd The 99.6 3E-15 6.5E-20 94.0 7.6 59 4-62 114-173 (178)
26 PRK11614 livF leucine/isoleuci 99.6 5.6E-16 1.2E-20 100.9 4.4 68 4-71 153-224 (237)
27 PRK14242 phosphate transporter 99.6 1.1E-15 2.5E-20 100.2 5.9 68 4-71 165-235 (253)
28 PRK11176 lipid transporter ATP 99.6 8.1E-16 1.8E-20 110.5 5.5 68 4-71 496-565 (582)
29 PRK13537 nodulation ABC transp 99.6 9.4E-16 2E-20 103.7 5.5 67 4-70 154-224 (306)
30 TIGR03411 urea_trans_UrtD urea 99.6 6.8E-16 1.5E-20 100.6 4.6 67 4-70 159-228 (242)
31 COG1124 DppF ABC-type dipeptid 99.6 6.4E-16 1.4E-20 101.8 4.3 68 4-71 157-229 (252)
32 PRK13643 cbiO cobalt transport 99.6 1.3E-15 2.9E-20 102.1 5.9 69 4-72 160-232 (288)
33 TIGR02211 LolD_lipo_ex lipopro 99.6 2.8E-15 6.1E-20 96.5 7.2 59 4-62 157-218 (221)
34 PRK13638 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 101.1 5.7 69 4-72 152-224 (271)
35 cd03256 ABC_PhnC_transporter A 99.6 1.7E-15 3.6E-20 98.5 6.2 67 4-70 160-231 (241)
36 cd03257 ABC_NikE_OppD_transpor 99.6 2.4E-15 5.3E-20 97.0 6.9 59 4-62 161-223 (228)
37 PRK11022 dppD dipeptide transp 99.6 1.3E-15 2.7E-20 103.9 5.8 69 4-72 169-242 (326)
38 TIGR02673 FtsE cell division A 99.6 2.6E-15 5.6E-20 96.3 6.9 58 4-61 153-213 (214)
39 PRK13651 cobalt transporter AT 99.6 1.6E-15 3.4E-20 102.7 6.1 69 4-72 181-253 (305)
40 PRK14273 phosphate ABC transpo 99.6 1.8E-15 3.8E-20 99.5 6.1 69 4-72 166-237 (254)
41 cd03251 ABCC_MsbA MsbA is an e 99.6 2.1E-15 4.5E-20 97.8 6.3 64 4-67 154-219 (234)
42 COG1131 CcmA ABC-type multidru 99.6 1.5E-15 3.3E-20 102.4 5.8 67 4-70 152-223 (293)
43 TIGR01188 drrA daunorubicin re 99.6 1.4E-15 3.1E-20 102.4 5.7 65 4-68 140-208 (302)
44 cd03224 ABC_TM1139_LivF_branch 99.6 1.8E-15 3.9E-20 97.4 5.9 59 4-62 148-209 (222)
45 cd03228 ABCC_MRP_Like The MRP 99.6 4.4E-15 9.5E-20 92.8 7.4 58 4-61 112-170 (171)
46 cd03268 ABC_BcrA_bacitracin_re 99.6 2.9E-15 6.4E-20 95.8 6.8 59 4-62 142-203 (208)
47 cd03296 ABC_CysA_sulfate_impor 99.6 1.8E-15 4E-20 98.6 5.9 68 4-71 152-224 (239)
48 cd03369 ABCC_NFT1 Domain 2 of 99.6 4.5E-15 9.8E-20 94.9 7.6 59 4-62 141-200 (207)
49 cd03254 ABCC_Glucan_exporter_l 99.6 2.5E-15 5.3E-20 97.2 6.4 59 4-62 155-214 (229)
50 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 2.4E-15 5.2E-20 97.9 6.4 59 4-62 155-214 (238)
51 PRK14239 phosphate transporter 99.6 1.9E-15 4.2E-20 99.0 5.9 70 4-73 164-236 (252)
52 cd03289 ABCC_CFTR2 The CFTR su 99.6 2.1E-15 4.5E-20 101.0 6.1 70 4-73 154-225 (275)
53 COG1135 AbcC ABC-type metal io 99.6 1.1E-15 2.5E-20 103.6 4.9 71 4-74 157-232 (339)
54 PRK13631 cbiO cobalt transport 99.6 1.5E-15 3.3E-20 103.4 5.5 67 4-70 192-262 (320)
55 PRK15093 antimicrobial peptide 99.6 1.9E-15 4.1E-20 103.1 5.9 68 4-71 174-246 (330)
56 TIGR01978 sufC FeS assembly AT 99.6 2.5E-15 5.5E-20 97.8 6.2 64 4-67 160-228 (243)
57 PRK13650 cbiO cobalt transport 99.6 1.6E-15 3.5E-20 101.2 5.3 69 4-72 156-228 (279)
58 PRK10744 pstB phosphate transp 99.6 2.3E-15 5.1E-20 99.3 6.0 69 4-72 172-243 (260)
59 cd03258 ABC_MetN_methionine_tr 99.6 2.5E-15 5.3E-20 97.5 6.0 65 4-68 156-225 (233)
60 cd03264 ABC_drug_resistance_li 99.6 4.4E-15 9.4E-20 95.1 7.0 59 4-62 146-206 (211)
61 TIGR02203 MsbA_lipidA lipid A 99.6 1.6E-15 3.6E-20 108.6 5.6 67 4-70 485-553 (571)
62 cd03216 ABC_Carb_Monos_I This 99.6 5.8E-15 1.3E-19 91.9 7.4 59 4-62 98-159 (163)
63 PRK14268 phosphate ABC transpo 99.6 2.6E-15 5.6E-20 99.0 6.1 68 4-71 170-240 (258)
64 TIGR01288 nodI ATP-binding ABC 99.6 1.7E-15 3.7E-20 102.1 5.4 67 4-70 151-221 (303)
65 PRK13536 nodulation factor exp 99.6 1.7E-15 3.7E-20 103.9 5.4 68 4-71 188-259 (340)
66 PRK13637 cbiO cobalt transport 99.6 2.2E-15 4.7E-20 101.0 5.8 68 4-71 160-232 (287)
67 TIGR02315 ABC_phnC phosphonate 99.6 3.2E-15 6.9E-20 97.4 6.4 67 4-70 161-232 (243)
68 PRK10790 putative multidrug tr 99.6 1.8E-15 4E-20 109.0 5.8 68 4-71 492-561 (592)
69 cd03226 ABC_cobalt_CbiO_domain 99.6 4.8E-15 1E-19 94.7 7.1 59 4-62 142-203 (205)
70 PRK11308 dppF dipeptide transp 99.6 2.3E-15 4.9E-20 102.8 5.9 69 4-72 170-243 (327)
71 PRK09473 oppD oligopeptide tra 99.6 2.1E-15 4.6E-20 103.0 5.8 69 4-72 177-250 (330)
72 PRK14270 phosphate ABC transpo 99.6 2.5E-15 5.4E-20 98.6 5.9 70 4-73 163-235 (251)
73 TIGR02769 nickel_nikE nickel i 99.6 2.7E-15 5.9E-20 99.3 6.1 69 4-72 166-239 (265)
74 cd03263 ABC_subfamily_A The AB 99.6 3.1E-15 6.8E-20 96.2 6.2 59 4-62 149-209 (220)
75 TIGR00972 3a0107s01c2 phosphat 99.6 2.9E-15 6.4E-20 98.1 6.2 68 4-71 160-230 (247)
76 PRK09493 glnQ glutamine ABC tr 99.6 2.8E-15 6E-20 97.7 6.0 68 4-71 152-223 (240)
77 TIGR03375 type_I_sec_LssB type 99.6 2.1E-15 4.6E-20 110.5 6.0 66 4-69 617-684 (694)
78 cd03292 ABC_FtsE_transporter F 99.6 5.1E-15 1.1E-19 94.8 7.1 58 4-61 152-212 (214)
79 TIGR01184 ntrCD nitrate transp 99.6 5.8E-15 1.2E-19 96.0 7.4 66 4-69 130-200 (230)
80 PRK11264 putative amino-acid A 99.6 3.1E-15 6.7E-20 97.9 6.2 67 4-70 160-230 (250)
81 cd03266 ABC_NatA_sodium_export 99.6 5.4E-15 1.2E-19 95.0 7.1 59 4-62 152-213 (218)
82 COG4988 CydD ABC-type transpor 99.6 2.4E-15 5.1E-20 108.0 5.9 68 4-71 472-541 (559)
83 TIGR02314 ABC_MetN D-methionin 99.6 2.5E-15 5.3E-20 103.3 5.8 69 4-72 156-229 (343)
84 PRK10619 histidine/lysine/argi 99.6 3.1E-15 6.7E-20 98.5 6.1 66 4-69 168-237 (257)
85 PRK15079 oligopeptide ABC tran 99.6 2.6E-15 5.6E-20 102.7 5.9 69 4-72 177-250 (331)
86 cd03230 ABC_DR_subfamily_A Thi 99.6 5.4E-15 1.2E-19 92.5 6.9 58 4-61 111-171 (173)
87 COG4987 CydC ABC-type transpor 99.6 2.3E-15 5.1E-20 107.6 5.8 70 4-73 490-561 (573)
88 PRK14244 phosphate ABC transpo 99.6 3.5E-15 7.6E-20 97.9 6.2 68 4-71 165-235 (251)
89 PRK10895 lipopolysaccharide AB 99.6 2.4E-15 5.1E-20 98.1 5.3 68 4-71 153-224 (241)
90 PRK13647 cbiO cobalt transport 99.6 4.9E-15 1.1E-19 98.7 6.9 65 4-68 154-222 (274)
91 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 2.5E-15 5.5E-20 97.8 5.4 66 4-69 148-217 (236)
92 cd03253 ABCC_ATM1_transporter 99.6 4.4E-15 9.5E-20 96.4 6.5 59 4-62 153-212 (236)
93 cd03265 ABC_DrrA DrrA is the A 99.6 4.2E-15 9.2E-20 95.8 6.3 59 4-62 147-209 (220)
94 cd03235 ABC_Metallic_Cations A 99.6 5.8E-15 1.3E-19 94.7 6.9 58 4-61 148-208 (213)
95 PRK13634 cbiO cobalt transport 99.6 3.1E-15 6.7E-20 100.4 5.9 67 4-70 161-232 (290)
96 PRK13657 cyclic beta-1,2-gluca 99.6 3.2E-15 6.8E-20 107.8 6.3 65 4-68 487-553 (588)
97 PRK13636 cbiO cobalt transport 99.6 3.4E-15 7.4E-20 99.8 6.0 69 4-72 157-230 (283)
98 PRK14274 phosphate ABC transpo 99.6 3.6E-15 7.8E-20 98.3 6.0 69 4-72 171-242 (259)
99 PRK14257 phosphate ABC transpo 99.6 3.6E-15 7.9E-20 101.9 6.2 71 4-74 241-314 (329)
100 cd03293 ABC_NrtD_SsuB_transpor 99.6 4.8E-15 1E-19 95.5 6.5 59 4-62 147-211 (220)
101 cd03229 ABC_Class3 This class 99.6 7.1E-15 1.5E-19 92.4 7.1 58 4-61 116-177 (178)
102 PRK14255 phosphate ABC transpo 99.6 3.4E-15 7.3E-20 97.9 5.8 69 4-72 164-235 (252)
103 PRK10908 cell division protein 99.6 8.4E-15 1.8E-19 94.5 7.5 59 4-62 153-214 (222)
104 cd03248 ABCC_TAP TAP, the Tran 99.6 7.2E-15 1.6E-19 95.0 7.2 58 4-61 166-224 (226)
105 PRK09580 sufC cysteine desulfu 99.6 5.5E-15 1.2E-19 96.6 6.7 59 4-62 161-223 (248)
106 PRK14247 phosphate ABC transpo 99.6 3.8E-15 8.3E-20 97.6 6.0 68 4-71 162-232 (250)
107 TIGR03771 anch_rpt_ABC anchore 99.6 2E-15 4.4E-20 97.8 4.6 67 4-71 129-199 (223)
108 PRK13641 cbiO cobalt transport 99.6 3.8E-15 8.2E-20 99.8 6.0 67 4-70 161-231 (287)
109 PRK11231 fecE iron-dicitrate t 99.6 1.4E-15 3.1E-20 100.0 3.9 59 4-62 154-215 (255)
110 cd03301 ABC_MalK_N The N-termi 99.6 7.2E-15 1.6E-19 94.1 7.0 59 4-62 146-208 (213)
111 cd03214 ABC_Iron-Siderophores_ 99.6 7.7E-15 1.7E-19 92.3 7.0 59 4-62 113-175 (180)
112 cd03244 ABCC_MRP_domain2 Domai 99.6 9.8E-15 2.1E-19 94.0 7.7 59 4-62 155-214 (221)
113 PRK14248 phosphate ABC transpo 99.6 3.1E-15 6.6E-20 99.1 5.4 67 4-70 180-249 (268)
114 PRK11701 phnK phosphonate C-P 99.6 4.5E-15 9.7E-20 97.8 6.1 68 4-71 167-239 (258)
115 PRK14256 phosphate ABC transpo 99.6 3.8E-15 8.3E-20 97.8 5.8 69 4-72 164-235 (252)
116 cd03297 ABC_ModC_molybdenum_tr 99.6 6.5E-15 1.4E-19 94.6 6.7 59 4-62 147-209 (214)
117 PRK14249 phosphate ABC transpo 99.6 4E-15 8.6E-20 97.6 5.8 68 4-71 163-233 (251)
118 cd03298 ABC_ThiQ_thiamine_tran 99.6 7.8E-15 1.7E-19 94.0 7.0 59 4-62 144-206 (211)
119 PRK11300 livG leucine/isoleuci 99.6 2.5E-15 5.5E-20 98.6 4.9 67 4-70 169-240 (255)
120 PRK14253 phosphate ABC transpo 99.6 4.1E-15 8.9E-20 97.4 5.9 67 4-70 161-230 (249)
121 PRK13635 cbiO cobalt transport 99.6 4.2E-15 9.2E-20 99.3 6.0 66 4-69 156-225 (279)
122 TIGR03740 galliderm_ABC gallid 99.6 6.3E-15 1.4E-19 95.2 6.6 59 4-62 140-201 (223)
123 COG3638 ABC-type phosphate/pho 99.6 6.5E-16 1.4E-20 101.6 1.9 71 4-75 163-238 (258)
124 TIGR03410 urea_trans_UrtE urea 99.6 4.8E-15 1E-19 96.0 6.0 67 4-70 147-218 (230)
125 PRK10584 putative ABC transpor 99.6 9.4E-15 2E-19 94.5 7.3 59 4-62 162-223 (228)
126 PRK13649 cbiO cobalt transport 99.6 4.7E-15 1E-19 98.7 6.0 67 4-70 161-231 (280)
127 PRK13639 cbiO cobalt transport 99.6 5.2E-15 1.1E-19 98.6 6.2 69 4-72 153-225 (275)
128 PRK13648 cbiO cobalt transport 99.6 4.6E-15 9.9E-20 98.4 5.9 67 4-70 158-228 (269)
129 PRK14251 phosphate ABC transpo 99.6 4.6E-15 9.9E-20 97.3 5.9 68 4-71 163-233 (251)
130 PRK10938 putative molybdenum t 99.6 3.3E-15 7.3E-20 105.8 5.6 66 4-69 151-220 (490)
131 PRK14240 phosphate transporter 99.6 5.8E-15 1.3E-19 96.7 6.3 67 4-70 162-231 (250)
132 cd03217 ABC_FeS_Assembly ABC-t 99.6 9.4E-15 2E-19 93.3 7.1 59 4-62 120-182 (200)
133 PRK11629 lolD lipoprotein tran 99.6 8.2E-15 1.8E-19 95.2 6.8 59 4-62 161-222 (233)
134 PRK13642 cbiO cobalt transport 99.6 4.7E-15 1E-19 98.8 5.8 69 4-72 156-228 (277)
135 PRK13646 cbiO cobalt transport 99.6 4.7E-15 1E-19 99.3 5.8 69 4-72 161-234 (286)
136 cd03262 ABC_HisP_GlnQ_permease 99.6 1.1E-14 2.3E-19 93.3 7.2 58 4-61 151-211 (213)
137 TIGR02770 nickel_nikD nickel i 99.6 4.4E-15 9.5E-20 96.4 5.5 68 4-71 141-213 (230)
138 cd03269 ABC_putative_ATPase Th 99.6 8.1E-15 1.8E-19 93.8 6.6 59 4-62 144-205 (210)
139 cd03273 ABC_SMC2_euk Eukaryoti 99.6 1.9E-14 4.1E-19 94.7 8.5 57 5-61 187-244 (251)
140 CHL00131 ycf16 sulfate ABC tra 99.6 7.7E-15 1.7E-19 96.2 6.6 59 4-62 167-229 (252)
141 PRK14267 phosphate ABC transpo 99.6 5.3E-15 1.2E-19 97.0 5.9 67 4-70 165-234 (253)
142 PRK11124 artP arginine transpo 99.6 6.8E-15 1.5E-19 96.0 6.4 66 4-69 157-226 (242)
143 PRK10771 thiQ thiamine transpo 99.6 3.7E-15 8E-20 96.8 5.0 69 4-72 145-218 (232)
144 PRK14235 phosphate transporter 99.6 6.2E-15 1.3E-19 97.8 6.2 68 4-71 179-249 (267)
145 PRK14272 phosphate ABC transpo 99.6 6.8E-15 1.5E-19 96.4 6.3 67 4-70 164-233 (252)
146 PRK13645 cbiO cobalt transport 99.6 3.8E-15 8.3E-20 99.7 5.1 67 4-70 166-237 (289)
147 cd03215 ABC_Carb_Monos_II This 99.6 1.1E-14 2.3E-19 91.8 6.9 58 4-61 120-180 (182)
148 TIGR03873 F420-0_ABC_ATP propo 99.6 6.1E-15 1.3E-19 97.1 5.9 66 4-69 153-222 (256)
149 cd03232 ABC_PDR_domain2 The pl 99.6 1.2E-14 2.6E-19 92.4 7.0 59 4-62 124-187 (192)
150 PRK14238 phosphate transporter 99.6 6.3E-15 1.4E-19 98.0 6.0 68 4-71 183-253 (271)
151 cd03288 ABCC_SUR2 The SUR doma 99.6 8.5E-15 1.8E-19 96.6 6.6 66 4-69 172-239 (257)
152 PRK11153 metN DL-methionine tr 99.6 5.7E-15 1.2E-19 101.3 5.9 66 4-69 156-226 (343)
153 PRK14269 phosphate ABC transpo 99.6 6.8E-15 1.5E-19 96.4 6.0 68 4-71 158-228 (246)
154 COG1132 MdlB ABC-type multidru 99.6 4.6E-15 9.9E-20 106.6 5.6 70 4-73 481-552 (567)
155 cd03294 ABC_Pro_Gly_Bertaine T 99.6 6.7E-15 1.4E-19 97.8 6.0 67 4-70 176-247 (269)
156 TIGR03005 ectoine_ehuA ectoine 99.6 7E-15 1.5E-19 96.5 6.0 68 4-71 162-234 (252)
157 PRK13652 cbiO cobalt transport 99.6 6.3E-15 1.4E-19 98.2 5.8 68 4-71 153-225 (277)
158 TIGR03522 GldA_ABC_ATP gliding 99.6 6.9E-15 1.5E-19 99.2 6.0 67 4-70 149-218 (301)
159 TIGR02323 CP_lyasePhnK phospho 99.6 7.4E-15 1.6E-19 96.4 6.0 67 4-70 164-235 (253)
160 cd03278 ABC_SMC_barmotin Barmo 99.6 2.1E-14 4.6E-19 92.0 8.0 57 5-61 134-191 (197)
161 PRK14262 phosphate ABC transpo 99.6 7.9E-15 1.7E-19 96.1 6.1 67 4-70 162-231 (250)
162 PRK14236 phosphate transporter 99.6 9E-15 2E-19 97.2 6.4 69 4-72 184-255 (272)
163 PRK11160 cysteine/glutathione 99.6 6.8E-15 1.5E-19 106.1 6.2 67 4-70 491-559 (574)
164 PRK14250 phosphate ABC transpo 99.6 8E-15 1.7E-19 95.9 6.0 68 4-71 147-219 (241)
165 cd03238 ABC_UvrA The excision 99.6 1.6E-14 3.6E-19 91.4 7.2 58 5-62 104-165 (176)
166 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 1.6E-14 3.4E-19 93.8 7.3 59 4-62 158-219 (224)
167 PRK13633 cobalt transporter AT 99.6 7.6E-15 1.7E-19 98.0 6.0 67 4-70 160-230 (280)
168 PRK14237 phosphate transporter 99.6 8.8E-15 1.9E-19 97.0 6.2 69 4-72 179-250 (267)
169 TIGR01192 chvA glucan exporter 99.6 7.3E-15 1.6E-19 106.2 6.2 66 4-69 487-554 (585)
170 PRK14265 phosphate ABC transpo 99.6 8.8E-15 1.9E-19 97.5 6.2 56 4-59 177-234 (274)
171 TIGR01846 type_I_sec_HlyB type 99.6 6.5E-15 1.4E-19 108.0 6.0 68 4-71 609-678 (694)
172 PRK11831 putative ABC transpor 99.6 8.1E-15 1.8E-19 97.3 5.9 66 4-69 159-229 (269)
173 PRK14275 phosphate ABC transpo 99.6 1E-14 2.2E-19 97.8 6.4 68 4-71 198-268 (286)
174 PRK09700 D-allose transporter 99.6 5.2E-15 1.1E-19 105.3 5.3 67 4-70 161-231 (510)
175 TIGR01193 bacteriocin_ABC ABC- 99.6 7.4E-15 1.6E-19 107.8 6.2 68 4-71 627-695 (708)
176 PRK13640 cbiO cobalt transport 99.6 7.9E-15 1.7E-19 98.0 5.8 67 4-70 159-229 (282)
177 cd03267 ABC_NatA_like Similar 99.6 1.7E-14 3.6E-19 94.2 7.2 59 4-62 169-231 (236)
178 COG1127 Ttg2A ABC-type transpo 99.6 5.4E-15 1.2E-19 97.6 4.9 68 5-72 162-234 (263)
179 COG4152 ABC-type uncharacteriz 99.6 2.7E-15 5.8E-20 99.6 3.4 66 4-69 146-215 (300)
180 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 7.4E-15 1.6E-19 107.8 6.1 68 4-72 631-699 (710)
181 PRK10419 nikE nickel transport 99.6 1.7E-14 3.6E-19 95.8 7.2 68 4-71 167-239 (268)
182 cd03295 ABC_OpuCA_Osmoprotecti 99.6 8E-15 1.7E-19 95.8 5.6 65 4-68 151-220 (242)
183 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 8.8E-15 1.9E-19 107.1 6.4 68 4-72 604-672 (686)
184 cd03223 ABCD_peroxisomal_ALDP 99.6 2E-14 4.3E-19 89.7 7.1 57 4-61 107-163 (166)
185 PRK10575 iron-hydroxamate tran 99.6 3.7E-15 8E-20 98.7 4.0 65 4-68 163-232 (265)
186 PRK14246 phosphate ABC transpo 99.6 9.4E-15 2E-19 96.6 5.9 69 4-72 169-240 (257)
187 PRK03695 vitamin B12-transport 99.5 5E-15 1.1E-19 97.3 4.5 64 6-69 151-218 (248)
188 PRK10418 nikD nickel transport 99.5 1.2E-14 2.6E-19 95.7 6.3 67 4-70 156-227 (254)
189 TIGR01186 proV glycine betaine 99.5 9.9E-15 2.1E-19 101.0 6.1 68 4-71 145-217 (363)
190 PRK10789 putative multidrug tr 99.5 8.7E-15 1.9E-19 105.4 6.1 67 4-70 467-535 (569)
191 PRK13632 cbiO cobalt transport 99.5 8.1E-15 1.8E-19 97.4 5.3 66 4-69 158-227 (271)
192 PRK15112 antimicrobial peptide 99.5 9.7E-15 2.1E-19 96.8 5.7 66 4-69 165-235 (267)
193 PRK14261 phosphate ABC transpo 99.5 1.3E-14 2.8E-19 95.3 6.2 67 4-70 165-234 (253)
194 cd03234 ABCG_White The White s 99.5 1.9E-14 4.2E-19 93.1 6.9 59 4-62 159-221 (226)
195 PRK14259 phosphate ABC transpo 99.5 1.4E-14 2.9E-19 96.3 6.2 57 4-60 170-228 (269)
196 TIGR03608 L_ocin_972_ABC putat 99.5 1.8E-14 4E-19 91.8 6.5 55 4-58 150-206 (206)
197 PRK14258 phosphate ABC transpo 99.5 1.3E-14 2.9E-19 95.8 6.1 68 4-71 166-243 (261)
198 PRK14241 phosphate transporter 99.5 1.3E-14 2.8E-19 95.6 5.9 56 4-59 164-221 (258)
199 TIGR02204 MsbA_rel ABC transpo 99.5 7.9E-15 1.7E-19 105.2 5.3 66 4-69 492-559 (576)
200 COG1117 PstB ABC-type phosphat 99.5 2.9E-15 6.2E-20 97.8 2.7 70 5-74 166-238 (253)
201 PRK11247 ssuB aliphatic sulfon 99.5 2.4E-14 5.1E-19 94.9 7.1 59 4-62 149-211 (257)
202 cd03213 ABCG_EPDR ABCG transpo 99.5 2.6E-14 5.7E-19 91.0 7.0 59 4-62 127-189 (194)
203 PRK15134 microcin C ABC transp 99.5 9.7E-15 2.1E-19 104.4 5.6 66 4-69 172-242 (529)
204 PRK13547 hmuV hemin importer A 99.5 5.6E-15 1.2E-19 98.6 4.1 67 5-71 171-242 (272)
205 COG4555 NatA ABC-type Na+ tran 99.5 1.4E-14 3E-19 94.0 5.7 66 4-69 149-218 (245)
206 PRK13549 xylose transporter AT 99.5 2.1E-14 4.6E-19 102.2 7.2 67 4-70 159-229 (506)
207 PRK10253 iron-enterobactin tra 99.5 5.7E-15 1.2E-19 97.8 4.0 67 4-70 159-230 (265)
208 TIGR01842 type_I_sec_PrtD type 99.5 1.3E-14 2.9E-19 103.9 6.2 64 4-67 470-536 (544)
209 PRK13548 hmuV hemin importer A 99.5 1.7E-14 3.7E-19 95.3 6.3 64 5-68 157-225 (258)
210 PRK13549 xylose transporter AT 99.5 1.4E-14 3E-19 103.1 6.2 66 4-69 421-490 (506)
211 TIGR02982 heterocyst_DevA ABC 99.5 3E-14 6.4E-19 92.0 7.2 58 4-61 157-217 (220)
212 PRK15056 manganese/iron transp 99.5 1E-14 2.2E-19 97.0 5.1 67 4-71 158-228 (272)
213 TIGR02142 modC_ABC molybdenum 99.5 1.4E-14 2.9E-19 99.7 5.9 67 4-70 147-218 (354)
214 PRK10762 D-ribose transporter 99.5 2.1E-14 4.5E-19 102.1 7.0 66 4-69 157-226 (501)
215 PRK14263 phosphate ABC transpo 99.5 1.8E-14 3.9E-19 95.4 6.2 56 4-59 165-222 (261)
216 PRK14243 phosphate transporter 99.5 1.8E-14 3.8E-19 95.5 6.2 56 4-59 167-224 (264)
217 cd03270 ABC_UvrA_I The excisio 99.5 2.9E-14 6.3E-19 92.8 7.1 54 8-61 159-214 (226)
218 PRK15134 microcin C ABC transp 99.5 1.3E-14 2.7E-19 103.8 5.9 69 4-72 441-514 (529)
219 PRK10261 glutathione transport 99.5 1.5E-14 3.2E-19 105.4 6.1 69 4-72 479-552 (623)
220 PRK11144 modC molybdate transp 99.5 1.4E-14 3E-19 99.6 5.7 69 4-72 144-217 (352)
221 PRK11288 araG L-arabinose tran 99.5 1.9E-14 4E-19 102.4 6.5 65 4-68 412-480 (501)
222 COG1125 OpuBA ABC-type proline 99.5 1.1E-14 2.3E-19 97.2 4.9 69 4-72 151-224 (309)
223 PRK15439 autoinducer 2 ABC tra 99.5 1.6E-14 3.4E-19 103.1 6.0 66 4-69 419-488 (510)
224 TIGR01277 thiQ thiamine ABC tr 99.5 3.2E-14 7E-19 91.4 7.0 59 4-62 144-206 (213)
225 PRK09984 phosphonate/organopho 99.5 2E-14 4.2E-19 94.9 6.1 66 4-69 168-238 (262)
226 PRK14271 phosphate ABC transpo 99.5 1.8E-14 3.9E-19 96.1 6.0 68 4-71 179-249 (276)
227 PRK15439 autoinducer 2 ABC tra 99.5 2.1E-14 4.6E-19 102.4 6.6 66 4-69 156-225 (510)
228 TIGR02633 xylG D-xylose ABC tr 99.5 2.8E-14 6E-19 101.3 7.2 59 4-62 157-218 (500)
229 COG4559 ABC-type hemin transpo 99.5 6.9E-15 1.5E-19 96.0 3.8 75 5-79 158-236 (259)
230 TIGR01187 potA spermidine/putr 99.5 1.6E-14 3.4E-19 98.5 5.7 67 4-70 116-187 (325)
231 PRK09700 D-allose transporter 99.5 2.1E-14 4.6E-19 102.2 6.5 59 4-62 425-486 (510)
232 PRK10070 glycine betaine trans 99.5 2.1E-14 4.6E-19 100.4 6.3 68 4-71 180-252 (400)
233 TIGR03415 ABC_choXWV_ATP choli 99.5 2E-14 4.4E-19 100.0 6.1 69 4-72 180-253 (382)
234 PRK10851 sulfate/thiosulfate t 99.5 1.9E-14 4E-19 99.2 5.9 68 4-71 152-224 (353)
235 PRK10762 D-ribose transporter 99.5 1.6E-14 3.4E-19 102.7 5.7 67 4-70 411-481 (501)
236 PRK11000 maltose/maltodextrin 99.5 1.6E-14 3.5E-19 99.9 5.6 67 4-70 149-220 (369)
237 PRK11650 ugpC glycerol-3-phosp 99.5 2E-14 4.3E-19 99.2 6.0 68 4-71 150-222 (356)
238 PRK10261 glutathione transport 99.5 2.1E-14 4.5E-19 104.7 6.3 68 4-71 184-256 (623)
239 PRK14252 phosphate ABC transpo 99.5 2.2E-14 4.9E-19 94.9 5.9 67 4-70 177-246 (265)
240 PRK10982 galactose/methyl gala 99.5 3E-14 6.5E-19 101.0 6.8 64 4-67 150-217 (491)
241 TIGR03269 met_CoM_red_A2 methy 99.5 1.9E-14 4.2E-19 102.6 5.7 59 4-62 184-246 (520)
242 cd03300 ABC_PotA_N PotA is an 99.5 2.8E-14 6E-19 92.8 5.7 65 4-68 146-215 (232)
243 cd03274 ABC_SMC4_euk Eukaryoti 99.5 9.6E-14 2.1E-18 89.8 8.1 57 5-61 148-205 (212)
244 PRK11248 tauB taurine transpor 99.5 5.7E-14 1.2E-18 92.8 7.1 57 4-60 144-204 (255)
245 TIGR03269 met_CoM_red_A2 methy 99.5 2.3E-14 5E-19 102.2 5.6 59 4-62 443-505 (520)
246 PRK14260 phosphate ABC transpo 99.5 3.4E-14 7.3E-19 93.8 6.0 57 4-60 166-224 (259)
247 PRK14266 phosphate ABC transpo 99.5 3.6E-14 7.8E-19 93.0 6.1 68 4-71 162-232 (250)
248 cd03250 ABCC_MRP_domain1 Domai 99.5 7.7E-14 1.7E-18 89.0 7.5 58 4-61 143-203 (204)
249 TIGR03258 PhnT 2-aminoethylpho 99.5 2.4E-14 5.1E-19 99.0 5.4 68 4-71 153-226 (362)
250 TIGR02324 CP_lyasePhnL phospho 99.5 4.3E-14 9.2E-19 91.3 6.3 56 4-59 165-223 (224)
251 TIGR00968 3a0106s01 sulfate AB 99.5 3.3E-14 7.2E-19 92.7 5.8 66 4-69 146-216 (237)
252 COG1123 ATPase components of v 99.5 2.5E-14 5.5E-19 102.7 5.6 70 4-73 445-519 (539)
253 PRK10247 putative ABC transpor 99.5 6.6E-14 1.4E-18 90.7 7.0 57 4-60 153-212 (225)
254 TIGR02633 xylG D-xylose ABC tr 99.5 3.5E-14 7.6E-19 100.8 6.1 59 4-62 419-480 (500)
255 cd03237 ABC_RNaseL_inhibitor_d 99.5 7.3E-14 1.6E-18 92.1 7.0 58 4-61 131-192 (246)
256 cd03290 ABCC_SUR1_N The SUR do 99.5 7.5E-14 1.6E-18 89.9 6.9 58 4-61 156-217 (218)
257 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 1.3E-13 2.8E-18 84.4 7.6 57 4-61 86-143 (144)
258 TIGR00958 3a01208 Conjugate Tr 99.5 3.6E-14 7.8E-19 104.6 5.9 67 4-71 633-700 (711)
259 COG1116 TauB ABC-type nitrate/ 99.5 5.2E-14 1.1E-18 93.0 6.0 58 4-61 146-207 (248)
260 KOG0055|consensus 99.5 3.1E-14 6.7E-19 108.9 5.6 70 4-73 505-576 (1228)
261 PRK14254 phosphate ABC transpo 99.5 3.9E-14 8.4E-19 95.0 5.5 67 4-70 196-266 (285)
262 PLN03232 ABC transporter C fam 99.5 4E-14 8.7E-19 110.7 6.3 70 4-73 1387-1458(1495)
263 cd03222 ABC_RNaseL_inhibitor T 99.5 1.4E-13 3.1E-18 87.2 7.7 58 4-61 87-148 (177)
264 TIGR03265 PhnT2 putative 2-ami 99.5 3.9E-14 8.5E-19 97.6 5.5 69 4-72 150-223 (353)
265 COG3840 ThiQ ABC-type thiamine 99.5 3.8E-14 8.2E-19 91.0 5.0 69 4-72 145-218 (231)
266 PRK10982 galactose/methyl gala 99.5 5.5E-14 1.2E-18 99.7 6.4 59 4-62 407-468 (491)
267 cd03271 ABC_UvrA_II The excisi 99.5 9.9E-14 2.1E-18 92.5 7.0 56 6-61 190-247 (261)
268 PRK09544 znuC high-affinity zi 99.5 2.8E-14 6E-19 94.2 4.3 65 4-69 136-205 (251)
269 PRK13546 teichoic acids export 99.5 4.8E-14 1E-18 93.8 5.4 64 4-67 159-226 (264)
270 PRK11432 fbpC ferric transport 99.5 4.7E-14 1E-18 97.2 5.5 67 4-70 152-223 (351)
271 cd00267 ABC_ATPase ABC (ATP-bi 99.5 1.6E-13 3.4E-18 84.5 7.2 58 4-61 96-156 (157)
272 PRK11288 araG L-arabinose tran 99.5 9.3E-14 2E-18 98.8 7.0 59 4-62 156-217 (501)
273 PRK15064 ABC transporter ATP-b 99.5 8E-14 1.7E-18 99.7 6.6 70 4-74 454-526 (530)
274 PRK10522 multidrug transporter 99.5 1.2E-13 2.5E-18 99.2 7.5 59 4-62 465-526 (547)
275 PRK13543 cytochrome c biogenes 99.5 1.3E-13 2.8E-18 88.8 6.9 56 4-59 153-211 (214)
276 PRK09452 potA putrescine/sperm 99.5 7E-14 1.5E-18 97.1 6.0 66 4-69 160-230 (375)
277 COG1137 YhbG ABC-type (unclass 99.5 4.1E-14 8.8E-19 91.8 4.5 74 4-77 155-232 (243)
278 TIGR00957 MRP_assoc_pro multi 99.5 5.5E-14 1.2E-18 110.1 6.0 70 4-73 1437-1508(1522)
279 PLN03130 ABC transporter C fam 99.5 6.7E-14 1.5E-18 110.1 6.5 70 4-73 1390-1461(1622)
280 TIGR02857 CydD thiol reductant 99.5 9.6E-14 2.1E-18 99.0 6.8 55 4-58 474-529 (529)
281 cd03291 ABCC_CFTR1 The CFTR su 99.5 1.1E-13 2.3E-18 93.0 6.3 67 4-70 175-244 (282)
282 PRK14264 phosphate ABC transpo 99.5 9.2E-14 2E-18 93.9 5.9 67 4-70 216-286 (305)
283 cd03240 ABC_Rad50 The catalyti 99.5 2.2E-13 4.7E-18 87.7 7.3 58 4-61 137-198 (204)
284 cd03272 ABC_SMC3_euk Eukaryoti 99.5 4.7E-13 1E-17 87.2 8.7 57 5-61 179-236 (243)
285 cd03239 ABC_SMC_head The struc 99.5 4E-13 8.7E-18 85.0 8.1 58 4-61 114-173 (178)
286 TIGR01271 CFTR_protein cystic 99.5 8.9E-14 1.9E-18 108.8 6.1 69 4-72 1369-1439(1490)
287 PRK11607 potG putrescine trans 99.5 9.2E-14 2E-18 96.5 5.5 67 4-70 165-236 (377)
288 KOG0057|consensus 99.5 1E-13 2.2E-18 99.5 5.8 69 4-72 503-573 (591)
289 cd03299 ABC_ModC_like Archeal 99.5 1.1E-13 2.3E-18 90.3 5.4 64 4-67 145-213 (235)
290 PRK13545 tagH teichoic acids e 99.5 1E-13 2.3E-18 99.8 5.7 66 4-69 159-228 (549)
291 PLN03211 ABC transporter G-25; 99.5 7.4E-14 1.6E-18 102.5 4.9 67 4-70 222-293 (659)
292 PRK10535 macrolide transporter 99.5 2.4E-13 5.2E-18 99.5 7.5 69 4-72 160-231 (648)
293 TIGR01194 cyc_pep_trnsptr cycl 99.5 2.3E-13 5.1E-18 97.9 7.2 59 4-62 486-547 (555)
294 PF02463 SMC_N: RecF/RecN/SMC 99.5 2.6E-13 5.6E-18 87.3 6.7 60 2-61 154-214 (220)
295 COG0411 LivG ABC-type branched 99.4 2.2E-13 4.7E-18 89.9 6.2 71 4-74 165-240 (250)
296 COG1129 MglA ABC-type sugar tr 99.4 2.3E-13 5.1E-18 97.1 6.8 63 5-67 162-228 (500)
297 cd03236 ABC_RNaseL_inhibitor_d 99.4 3.3E-13 7.2E-18 89.5 6.9 58 4-61 155-215 (255)
298 COG4172 ABC-type uncharacteriz 99.4 1.2E-13 2.7E-18 96.9 4.7 70 5-74 443-517 (534)
299 PRK13539 cytochrome c biogenes 99.4 3.3E-13 7.1E-18 86.5 6.3 56 4-60 143-200 (207)
300 COG4172 ABC-type uncharacteriz 99.4 1.6E-13 3.4E-18 96.5 4.9 69 4-72 173-246 (534)
301 PTZ00243 ABC transporter; Prov 99.4 2.4E-13 5.3E-18 106.7 6.5 70 4-73 1461-1533(1560)
302 cd03241 ABC_RecN RecN ATPase i 99.4 9.4E-13 2E-17 87.9 8.2 57 5-61 191-248 (276)
303 PRK15177 Vi polysaccharide exp 99.4 3.4E-13 7.4E-18 87.1 5.7 59 4-62 120-180 (213)
304 TIGR02169 SMC_prok_A chromosom 99.4 5.2E-13 1.1E-17 101.0 7.3 69 3-74 1093-1162(1164)
305 cd03231 ABC_CcmA_heme_exporter 99.4 5.8E-13 1.3E-17 85.1 6.5 55 4-58 141-198 (201)
306 PRK10938 putative molybdenum t 99.4 3.8E-13 8.2E-18 95.4 6.2 59 4-62 417-480 (490)
307 COG4598 HisP ABC-type histidin 99.4 3.9E-13 8.5E-18 86.5 5.6 69 4-72 168-240 (256)
308 cd03233 ABC_PDR_domain1 The pl 99.4 7.5E-13 1.6E-17 84.7 6.9 59 4-62 134-197 (202)
309 TIGR00634 recN DNA repair prot 99.4 1.2E-12 2.6E-17 94.6 8.6 56 6-61 462-518 (563)
310 cd03279 ABC_sbcCD SbcCD and ot 99.4 1.2E-12 2.5E-17 84.5 7.4 57 5-61 150-209 (213)
311 PRK15064 ABC transporter ATP-b 99.4 8.4E-13 1.8E-17 94.5 7.3 58 4-62 171-229 (530)
312 PRK13538 cytochrome c biogenes 99.4 8.9E-13 1.9E-17 84.3 6.7 55 4-58 145-202 (204)
313 COG0488 Uup ATPase components 99.4 5.3E-13 1.2E-17 96.1 6.3 58 4-62 169-227 (530)
314 PRK13409 putative ATPase RIL; 99.4 8.1E-13 1.8E-17 96.1 7.1 57 4-60 469-529 (590)
315 TIGR02168 SMC_prok_B chromosom 99.4 5.5E-13 1.2E-17 100.6 6.4 68 3-73 1108-1176(1179)
316 PRK10636 putative ABC transpor 99.4 9.7E-13 2.1E-17 96.3 7.5 58 4-62 446-504 (638)
317 COG4608 AppF ABC-type oligopep 99.4 3.7E-13 8E-18 89.9 4.9 69 5-73 126-199 (268)
318 KOG0058|consensus 99.4 3.4E-13 7.4E-18 99.0 5.1 63 4-66 620-683 (716)
319 PTZ00265 multidrug resistance 99.4 6.8E-13 1.5E-17 103.9 7.0 57 4-60 1374-1433(1466)
320 KOG0055|consensus 99.4 3.5E-13 7.6E-18 103.2 5.2 70 4-73 1142-1213(1228)
321 COG4175 ProV ABC-type proline/ 99.4 3.6E-13 7.9E-18 92.1 4.7 71 4-74 180-255 (386)
322 PRK13540 cytochrome c biogenes 99.4 6.1E-13 1.3E-17 84.8 5.4 52 4-55 143-196 (200)
323 PRK11819 putative ABC transpor 99.4 1.1E-12 2.5E-17 94.4 7.4 58 4-62 179-237 (556)
324 TIGR01166 cbiO cobalt transpor 99.4 5.4E-13 1.2E-17 84.3 5.0 45 4-48 143-189 (190)
325 COG4161 ArtP ABC-type arginine 99.4 1.1E-12 2.4E-17 83.3 5.9 71 4-74 157-231 (242)
326 TIGR00955 3a01204 The Eye Pigm 99.4 4.5E-13 9.8E-18 97.6 4.8 67 4-70 182-253 (617)
327 PRK10869 recombination and rep 99.4 2.9E-12 6.2E-17 92.7 8.8 58 4-61 450-508 (553)
328 TIGR01257 rim_protein retinal- 99.4 7.5E-13 1.6E-17 106.0 6.1 65 4-68 2086-2154(2272)
329 PRK13541 cytochrome c biogenes 99.4 8.4E-13 1.8E-17 83.9 5.2 52 4-55 139-192 (195)
330 COG2884 FtsE Predicted ATPase 99.4 1.9E-12 4.1E-17 83.4 6.8 59 4-62 153-214 (223)
331 PRK10636 putative ABC transpor 99.4 1.8E-12 4E-17 94.8 7.6 58 4-62 165-223 (638)
332 COG3845 ABC-type uncharacteriz 99.4 7.1E-13 1.5E-17 94.1 5.2 59 4-62 156-217 (501)
333 PRK13409 putative ATPase RIL; 99.4 1.9E-12 4.2E-17 94.2 7.5 58 4-61 228-287 (590)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 2.3E-12 4.9E-17 92.8 7.7 57 4-61 459-516 (552)
335 TIGR01257 rim_protein retinal- 99.4 1.1E-12 2.3E-17 105.2 6.4 63 4-66 1077-1142(2272)
336 PRK11147 ABC transporter ATPas 99.4 2E-12 4.3E-17 94.5 7.4 58 4-62 172-230 (635)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 2.2E-12 4.7E-17 92.9 7.3 58 4-62 177-235 (552)
338 COG4604 CeuD ABC-type enteroch 99.4 4.1E-13 8.9E-18 87.1 3.2 76 4-79 151-231 (252)
339 TIGR00954 3a01203 Peroxysomal 99.4 2.3E-12 5.1E-17 94.5 7.6 57 4-61 598-654 (659)
340 PTZ00265 multidrug resistance 99.4 1.7E-12 3.8E-17 101.6 7.0 58 4-61 595-655 (1466)
341 cd03227 ABC_Class2 ABC-type Cl 99.4 3.5E-12 7.5E-17 79.3 6.9 57 5-61 98-156 (162)
342 TIGR01189 ccmA heme ABC export 99.3 2.1E-12 4.6E-17 82.1 5.8 52 4-56 143-196 (198)
343 TIGR00630 uvra excinuclease AB 99.3 1.9E-12 4.1E-17 97.9 6.1 53 7-59 508-562 (924)
344 PRK00349 uvrA excinuclease ABC 99.3 1.9E-12 4.2E-17 98.1 5.9 52 7-58 510-563 (943)
345 PRK11819 putative ABC transpor 99.3 5.1E-12 1.1E-16 91.1 7.6 56 4-60 461-517 (556)
346 COG1118 CysA ABC-type sulfate/ 99.3 2.2E-12 4.7E-17 87.8 5.3 61 4-64 153-217 (345)
347 PLN03140 ABC transporter G fam 99.3 3E-12 6.6E-17 100.3 6.7 64 4-67 1035-1104(1470)
348 COG1196 Smc Chromosome segrega 99.3 1.7E-12 3.7E-17 99.9 5.3 71 1-74 1083-1154(1163)
349 COG4181 Predicted ABC-type tra 99.3 3.2E-12 7E-17 81.6 5.6 58 5-62 163-223 (228)
350 PRK11147 ABC transporter ATPas 99.3 5.5E-12 1.2E-16 92.2 7.5 58 4-62 456-515 (635)
351 PRK03918 chromosome segregatio 99.3 7.5E-12 1.6E-16 93.5 8.4 58 4-61 810-869 (880)
352 PLN03073 ABC transporter F fam 99.3 6.6E-12 1.4E-16 93.1 7.6 58 4-62 643-701 (718)
353 PLN03232 ABC transporter C fam 99.3 2.7E-12 5.9E-17 100.6 5.7 64 4-67 756-822 (1495)
354 COG4586 ABC-type uncharacteriz 99.3 3.3E-12 7.1E-17 86.0 5.1 66 4-69 172-242 (325)
355 KOG0996|consensus 99.3 1E-12 2.2E-17 99.9 2.8 72 1-74 1212-1284(1293)
356 PLN03073 ABC transporter F fam 99.3 8.8E-12 1.9E-16 92.4 7.7 58 4-62 360-418 (718)
357 TIGR00956 3a01205 Pleiotropic 99.3 4.6E-12 9.9E-17 98.9 6.4 64 4-67 917-987 (1394)
358 TIGR00630 uvra excinuclease AB 99.3 5.5E-12 1.2E-16 95.5 6.4 57 5-61 848-906 (924)
359 COG3842 PotA ABC-type spermidi 99.3 2.5E-12 5.4E-17 88.8 3.5 61 4-64 152-216 (352)
360 TIGR02868 CydC thiol reductant 99.3 6.3E-12 1.4E-16 89.7 5.7 43 4-46 486-529 (529)
361 COG4618 ArpD ABC-type protease 99.3 4.8E-12 1E-16 90.6 5.0 69 4-72 488-559 (580)
362 COG4619 ABC-type uncharacteriz 99.3 7.2E-12 1.6E-16 79.8 5.3 57 5-61 150-210 (223)
363 TIGR00957 MRP_assoc_pro multi 99.3 5.6E-12 1.2E-16 99.0 5.6 64 4-67 776-844 (1522)
364 TIGR01271 CFTR_protein cystic 99.3 6.1E-12 1.3E-16 98.7 5.8 64 4-67 564-630 (1490)
365 PLN03130 ABC transporter C fam 99.3 6.6E-12 1.4E-16 99.1 5.8 64 4-67 756-822 (1622)
366 COG1129 MglA ABC-type sugar tr 99.3 5.1E-12 1.1E-16 90.4 4.7 59 4-62 417-478 (500)
367 COG3839 MalK ABC-type sugar tr 99.3 6.5E-12 1.4E-16 86.4 4.9 60 4-63 149-212 (338)
368 PRK00635 excinuclease ABC subu 99.3 1.3E-11 2.8E-16 97.8 7.2 56 4-59 828-885 (1809)
369 PRK00349 uvrA excinuclease ABC 99.3 9E-12 2E-16 94.5 5.8 52 8-59 853-906 (943)
370 COG1119 ModF ABC-type molybden 99.3 1.7E-11 3.8E-16 81.1 6.3 59 4-62 187-250 (257)
371 TIGR00956 3a01205 Pleiotropic 99.3 7.2E-12 1.6E-16 97.9 5.0 66 4-69 225-296 (1394)
372 PRK01156 chromosome segregatio 99.2 3E-11 6.4E-16 90.8 7.8 64 4-71 823-891 (895)
373 COG0396 sufC Cysteine desulfur 99.2 2.7E-11 5.9E-16 79.7 6.5 65 4-68 160-229 (251)
374 COG5265 ATM1 ABC-type transpor 99.2 1.4E-11 3E-16 86.8 5.2 64 4-67 415-480 (497)
375 PHA02562 46 endonuclease subun 99.2 4.4E-11 9.6E-16 85.7 7.8 57 5-61 495-552 (562)
376 PLN03140 ABC transporter G fam 99.2 1.2E-11 2.6E-16 97.0 5.2 67 4-70 352-424 (1470)
377 COG4148 ModC ABC-type molybdat 99.2 1.1E-11 2.4E-16 83.9 4.1 70 4-73 144-218 (352)
378 PTZ00243 ABC transporter; Prov 99.2 2E-11 4.4E-16 96.1 6.1 65 4-68 798-865 (1560)
379 cd03276 ABC_SMC6_euk Eukaryoti 99.2 2.5E-11 5.5E-16 77.8 5.5 58 4-61 129-191 (198)
380 KOG0054|consensus 99.2 2.1E-11 4.5E-16 94.9 5.8 71 4-74 1291-1363(1381)
381 COG0488 Uup ATPase components 99.2 4.7E-11 1E-15 86.2 7.2 56 4-60 455-511 (530)
382 cd03277 ABC_SMC5_euk Eukaryoti 99.2 3.2E-11 7E-16 78.2 5.8 58 4-61 146-210 (213)
383 PRK00635 excinuclease ABC subu 99.2 5.2E-11 1.1E-15 94.5 7.1 57 5-61 493-553 (1809)
384 COG0410 LivF ABC-type branched 99.2 5.1E-11 1.1E-15 78.2 5.8 71 4-74 152-227 (237)
385 KOG0061|consensus 99.2 1.1E-11 2.3E-16 90.7 2.9 66 4-69 186-256 (613)
386 COG4674 Uncharacterized ABC-ty 99.2 7.4E-11 1.6E-15 76.6 5.9 72 3-74 162-236 (249)
387 COG4107 PhnK ABC-type phosphon 99.2 1.1E-10 2.3E-15 75.1 6.1 70 4-73 167-241 (258)
388 cd03280 ABC_MutS2 MutS2 homolo 99.1 8.6E-11 1.9E-15 75.1 5.1 59 4-62 106-167 (200)
389 COG4170 SapD ABC-type antimicr 99.1 1.2E-10 2.6E-15 76.9 5.2 69 4-72 174-247 (330)
390 KOG0059|consensus 99.1 5.9E-11 1.3E-15 89.7 4.0 65 4-68 714-782 (885)
391 TIGR00618 sbcc exonuclease Sbc 99.1 3.3E-10 7E-15 86.7 7.2 56 6-61 978-1036(1042)
392 COG4525 TauB ABC-type taurine 99.1 2.3E-10 4.9E-15 74.5 4.9 58 4-61 148-209 (259)
393 COG0419 SbcC ATPase involved i 99.1 4.7E-10 1E-14 84.8 7.3 56 6-61 841-898 (908)
394 PRK02224 chromosome segregatio 99.1 4E-10 8.6E-15 84.5 6.8 55 7-61 812-869 (880)
395 COG1134 TagH ABC-type polysacc 99.1 2.8E-10 6.2E-15 75.3 5.1 69 4-72 163-235 (249)
396 cd03243 ABC_MutS_homologs The 99.1 2.3E-10 4.9E-15 73.2 4.4 58 4-61 106-166 (202)
397 KOG0018|consensus 99.0 2E-10 4.3E-15 87.1 4.2 69 1-73 1068-1136(1141)
398 KOG0065|consensus 99.0 1.3E-10 2.9E-15 89.8 3.0 59 4-62 945-1008(1391)
399 KOG0062|consensus 99.0 9.5E-10 2.1E-14 79.0 6.8 58 4-62 498-556 (582)
400 COG1101 PhnK ABC-type uncharac 99.0 8.1E-10 1.8E-14 72.6 5.9 59 4-62 164-226 (263)
401 KOG0056|consensus 99.0 3.1E-10 6.8E-15 81.9 3.5 60 4-63 690-750 (790)
402 COG4138 BtuD ABC-type cobalami 99.0 7.6E-11 1.7E-15 75.8 0.1 72 7-78 151-226 (248)
403 COG4778 PhnL ABC-type phosphon 99.0 6.9E-10 1.5E-14 71.1 4.3 57 5-61 169-228 (235)
404 KOG0062|consensus 99.0 1.2E-09 2.7E-14 78.5 5.5 57 3-60 213-270 (582)
405 PRK10246 exonuclease subunit S 99.0 2.6E-09 5.7E-14 82.0 7.6 65 6-72 975-1041(1047)
406 KOG0964|consensus 99.0 1.9E-10 4.1E-15 86.8 1.3 61 1-61 1114-1175(1200)
407 KOG0927|consensus 98.9 1.4E-09 3.1E-14 78.5 5.4 58 4-62 237-296 (614)
408 TIGR00606 rad50 rad50. This fa 98.9 4.1E-09 8.8E-14 82.3 8.0 58 4-61 1221-1291(1311)
409 cd03283 ABC_MutS-like MutS-lik 98.9 3E-09 6.6E-14 68.3 5.3 46 6-51 105-153 (199)
410 cd03285 ABC_MSH2_euk MutS2 hom 98.9 3.5E-09 7.6E-14 69.1 5.1 59 4-62 107-169 (222)
411 KOG0054|consensus 98.9 2.5E-09 5.4E-14 83.6 5.0 69 4-72 659-730 (1381)
412 COG0178 UvrA Excinuclease ATPa 98.9 3.5E-09 7.6E-14 79.4 5.4 58 5-62 842-901 (935)
413 KOG0927|consensus 98.9 2.5E-09 5.3E-14 77.3 3.8 59 3-62 524-583 (614)
414 smart00534 MUTSac ATPase domai 98.8 7E-09 1.5E-13 65.7 5.4 51 4-54 76-130 (185)
415 COG3910 Predicted ATPase [Gene 98.8 1.5E-08 3.2E-13 65.6 5.9 59 3-61 143-204 (233)
416 PF13304 AAA_21: AAA domain; P 98.8 1.4E-08 3E-13 63.8 5.4 42 8-49 259-302 (303)
417 cd03284 ABC_MutS1 MutS1 homolo 98.7 1.3E-08 2.7E-13 66.2 4.0 58 4-61 107-168 (216)
418 COG1245 Predicted ATPase, RNas 98.7 3.2E-08 6.9E-13 70.9 6.3 58 4-61 229-289 (591)
419 COG0497 RecN ATPase involved i 98.7 6.1E-08 1.3E-12 70.4 7.6 57 6-62 453-510 (557)
420 cd03242 ABC_RecF RecF is a rec 98.7 3.1E-08 6.7E-13 66.0 5.7 56 4-61 208-267 (270)
421 COG4178 ABC-type uncharacteriz 98.7 2.8E-08 6.2E-13 72.7 5.7 58 4-61 531-589 (604)
422 COG4133 CcmA ABC-type transpor 98.7 3E-08 6.5E-13 63.9 4.6 46 4-49 146-193 (209)
423 COG0178 UvrA Excinuclease ATPa 98.7 5.7E-08 1.2E-12 73.1 6.2 53 9-61 504-558 (935)
424 KOG0066|consensus 98.6 7E-08 1.5E-12 69.5 5.9 57 4-61 720-777 (807)
425 COG1245 Predicted ATPase, RNas 98.6 8E-08 1.7E-12 68.9 6.0 58 4-61 471-532 (591)
426 KOG0933|consensus 98.6 4E-08 8.6E-13 74.7 3.4 59 3-61 1101-1160(1174)
427 PRK00064 recF recombination pr 98.6 1.8E-07 3.8E-12 64.9 6.1 57 4-61 298-357 (361)
428 cd03282 ABC_MSH4_euk MutS4 hom 98.5 1.2E-07 2.7E-12 61.2 4.2 48 4-51 106-156 (204)
429 COG4136 ABC-type uncharacteriz 98.5 1.6E-07 3.5E-12 59.4 3.5 56 4-59 150-208 (213)
430 TIGR00611 recf recF protein. A 98.4 5.1E-07 1.1E-11 62.8 5.2 44 5-49 301-344 (365)
431 COG3845 ABC-type uncharacteriz 98.4 5.2E-07 1.1E-11 64.7 5.3 59 4-62 419-480 (501)
432 COG4167 SapF ABC-type antimicr 98.4 8.5E-07 1.8E-11 57.7 4.8 69 5-73 166-239 (267)
433 PF13175 AAA_15: AAA ATPase do 98.4 7.3E-07 1.6E-11 61.3 4.7 40 9-48 372-414 (415)
434 cd03281 ABC_MSH5_euk MutS5 hom 98.3 1.1E-06 2.3E-11 57.1 5.1 48 4-51 106-159 (213)
435 cd01124 KaiC KaiC is a circadi 98.3 1.4E-06 3E-11 54.3 4.8 57 5-61 94-165 (187)
436 cd03286 ABC_MSH6_euk MutS6 hom 98.3 1.5E-06 3.2E-11 56.8 4.2 48 3-50 106-157 (218)
437 PRK13830 conjugal transfer pro 98.2 3.1E-06 6.7E-11 64.0 6.2 59 4-62 650-721 (818)
438 PRK00409 recombination and DNA 98.2 2.8E-06 6E-11 64.1 5.0 48 4-51 405-455 (782)
439 TIGR02858 spore_III_AA stage I 98.2 7.8E-06 1.7E-10 55.0 6.3 60 5-71 193-267 (270)
440 TIGR01069 mutS2 MutS2 family p 98.2 3.9E-06 8.4E-11 63.3 5.2 47 4-50 400-449 (771)
441 cd03287 ABC_MSH3_euk MutS3 hom 98.1 3.4E-06 7.4E-11 55.2 3.9 48 3-50 107-158 (222)
442 TIGR02680 conserved hypothetic 98.1 7.5E-06 1.6E-10 64.8 5.2 41 5-46 1276-1316(1353)
443 COG4615 PvdE ABC-type sideroph 98.0 2.3E-06 5.1E-11 60.8 2.0 58 5-62 465-525 (546)
444 COG4637 Predicted ATPase [Gene 98.0 1.7E-05 3.6E-10 54.9 5.3 50 2-51 286-336 (373)
445 PF13558 SbcCD_C: Putative exo 98.0 1.2E-05 2.7E-10 45.7 4.0 29 5-33 62-90 (90)
446 KOG0066|consensus 98.0 1.9E-06 4E-11 62.3 0.5 58 4-62 428-486 (807)
447 PRK14079 recF recombination pr 97.9 2.8E-05 6.1E-10 53.8 5.8 53 5-61 289-341 (349)
448 KOG0962|consensus 97.9 1.4E-05 3E-10 62.6 4.6 57 5-61 1206-1275(1294)
449 KOG0060|consensus 97.9 2.5E-05 5.5E-10 57.4 5.6 57 4-61 586-642 (659)
450 PRK13695 putative NTPase; Prov 97.9 1.6E-05 3.6E-10 49.5 3.6 57 4-62 94-152 (174)
451 KOG0063|consensus 97.8 8.1E-05 1.8E-09 53.6 6.2 58 4-61 229-289 (592)
452 PRK13891 conjugal transfer pro 97.8 6.1E-05 1.3E-09 57.4 5.5 46 4-49 685-733 (852)
453 KOG2355|consensus 97.7 7.3E-05 1.6E-09 49.6 4.4 59 4-62 163-225 (291)
454 PTZ00132 GTP-binding nuclear p 97.7 3.1E-05 6.7E-10 49.6 2.7 31 4-34 168-203 (215)
455 PRK08533 flagellar accessory p 97.6 0.00016 3.5E-09 47.4 4.9 56 5-61 116-186 (230)
456 KOG0065|consensus 97.6 9.8E-05 2.1E-09 58.3 4.3 67 4-70 276-348 (1391)
457 PRK13873 conjugal transfer ATP 97.6 0.00014 3.1E-09 55.0 4.9 44 5-48 634-680 (811)
458 COG2401 ABC-type ATPase fused 97.5 0.00018 4E-09 51.7 4.9 57 5-61 524-585 (593)
459 PRK08699 DNA polymerase III su 97.5 0.00025 5.4E-09 48.8 5.0 40 10-49 116-156 (325)
460 COG3593 Predicted ATP-dependen 97.4 0.00032 6.9E-09 51.7 4.8 57 4-60 299-358 (581)
461 KOG0063|consensus 97.4 0.00017 3.8E-09 52.0 3.0 57 5-61 473-533 (592)
462 PRK06067 flagellar accessory p 97.3 0.00099 2.1E-08 43.3 6.2 56 6-61 120-188 (234)
463 PF13166 AAA_13: AAA domain 97.3 0.00065 1.4E-08 50.4 5.6 45 5-49 526-574 (712)
464 TIGR03185 DNA_S_dndD DNA sulfu 97.2 0.00088 1.9E-08 49.7 5.3 41 6-48 575-616 (650)
465 PRK13898 type IV secretion sys 97.2 0.00088 1.9E-08 50.8 5.3 44 5-48 641-687 (800)
466 PRK05399 DNA mismatch repair p 97.2 0.00075 1.6E-08 51.7 4.9 52 3-54 683-738 (854)
467 cd01120 RecA-like_NTPases RecA 96.9 0.0022 4.7E-08 38.3 4.4 43 5-47 84-138 (165)
468 cd01125 repA Hexameric Replica 96.9 0.0018 3.8E-08 42.4 4.1 41 5-46 110-159 (239)
469 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0033 7.2E-08 39.4 4.6 57 5-61 94-155 (159)
470 PF13514 AAA_27: AAA domain 96.8 0.0018 3.8E-08 50.7 4.0 45 10-54 1055-1100(1111)
471 KOG0064|consensus 96.4 0.0012 2.6E-08 48.8 0.7 56 4-60 628-683 (728)
472 COG1195 RecF Recombinational D 96.4 0.01 2.2E-07 41.7 5.2 55 5-61 301-359 (363)
473 COG4938 Uncharacterized conser 96.3 0.008 1.7E-07 41.5 4.3 45 5-49 259-305 (374)
474 TIGR01070 mutS1 DNA mismatch r 96.2 0.0093 2E-07 45.8 4.6 50 3-52 668-721 (840)
475 PRK07414 cob(I)yrinic acid a,c 96.1 0.015 3.2E-07 37.2 4.5 57 5-61 114-175 (178)
476 cd01131 PilT Pilus retraction 96.0 0.012 2.6E-07 37.6 3.8 50 5-59 73-122 (198)
477 TIGR00708 cobA cob(I)alamin ad 95.7 0.019 4.1E-07 36.5 3.8 58 5-62 96-158 (173)
478 COG4694 Uncharacterized protei 95.7 0.019 4.1E-07 42.7 4.1 43 7-49 556-600 (758)
479 PRK05986 cob(I)alamin adenolsy 95.6 0.022 4.9E-07 36.8 3.9 57 6-62 115-176 (191)
480 PF02572 CobA_CobO_BtuR: ATP:c 95.6 0.03 6.5E-07 35.6 4.4 58 5-62 95-157 (172)
481 PF00488 MutS_V: MutS domain V 95.6 0.027 5.8E-07 37.2 4.2 46 5-50 121-170 (235)
482 PRK14088 dnaA chromosomal repl 95.5 0.028 6E-07 40.3 4.5 45 6-50 194-242 (440)
483 PRK04296 thymidine kinase; Pro 95.4 0.17 3.7E-06 32.1 7.5 53 6-62 78-143 (190)
484 PRK07471 DNA polymerase III su 95.3 0.047 1E-06 38.3 5.0 44 5-49 140-184 (365)
485 PRK06893 DNA replication initi 95.1 0.048 1E-06 35.6 4.3 43 3-45 88-133 (229)
486 TIGR02788 VirB11 P-type DNA tr 94.6 0.046 1E-06 37.2 3.4 51 4-61 216-268 (308)
487 cd01128 rho_factor Transcripti 94.4 0.026 5.6E-07 37.7 1.7 55 5-62 154-210 (249)
488 PRK07413 hypothetical protein; 94.2 0.078 1.7E-06 37.6 3.8 57 6-62 305-367 (382)
489 COG3950 Predicted ATP-binding 94.1 0.034 7.5E-07 39.4 1.9 46 5-50 294-340 (440)
490 COG1222 RPT1 ATP-dependent 26S 93.7 0.14 3E-06 36.5 4.3 55 4-58 242-319 (406)
491 KOG0328|consensus 93.7 0.07 1.5E-06 37.1 2.7 42 3-44 166-208 (400)
492 PF09818 ABC_ATPase: Predicted 93.4 0.33 7.2E-06 35.2 5.8 57 6-62 340-415 (448)
493 COG1106 Predicted ATPases [Gen 93.3 0.21 4.6E-06 35.4 4.6 44 6-49 270-316 (371)
494 PRK07413 hypothetical protein; 93.2 0.28 6.1E-06 34.9 5.2 57 6-62 125-186 (382)
495 PF11398 DUF2813: Protein of u 93.2 0.27 5.8E-06 34.8 5.1 43 7-50 285-327 (373)
496 PRK14087 dnaA chromosomal repl 93.0 0.22 4.8E-06 35.8 4.5 42 4-45 204-248 (450)
497 smart00382 AAA ATPases associa 92.9 0.52 1.1E-05 26.6 5.3 40 6-45 78-125 (148)
498 PTZ00454 26S protease regulato 92.9 0.26 5.6E-06 35.0 4.7 45 5-49 237-297 (398)
499 PRK06526 transposase; Provisio 92.7 0.19 4.2E-06 33.5 3.7 43 3-45 156-200 (254)
500 PRK08181 transposase; Validate 92.7 0.2 4.4E-06 33.8 3.8 42 4-45 165-208 (269)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.76 E-value=5.6e-19 Score=117.33 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=69.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeeecCCcCC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRVHKASLN 78 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~~~~~l~ 78 (80)
+++|++++|||||++||..++-++++.++++ +++|+|++.||++.+ ++||+++.+++|+ +..|.+.++++++.|.
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~ 233 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLR 233 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHH
Confidence 5899999999999999999999999999998 589999999999875 5799999999998 8889999999988775
Q ss_pred C
Q psy832 79 S 79 (80)
Q Consensus 79 ~ 79 (80)
+
T Consensus 234 ~ 234 (258)
T COG1120 234 E 234 (258)
T ss_pred H
Confidence 4
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=7.7e-18 Score=109.63 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
+.+|+++++|||||+|||+...++++.++++ .|+|.++|||.+.++. .|||++++..|. +..+++.+++..
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 4689999999999999999999999999999 7999999999999986 599999999997 777766666543
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=5.3e-17 Score=107.69 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=65.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeeccCCcceeeeecCCcC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKMLGSLTIKGRVHKASL 77 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~~~~~~~~~~~~~~~l 77 (80)
+++|++|+|||||+|+|+.++..++++|+++ +|+||++||||.+... ++|+++.+.+.-...|.+.++++++++
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~~~l 231 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTEENL 231 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCHHHH
Confidence 5799999999999999999999999999999 6999999999988764 799999998875677788877776554
No 4
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.68 E-value=6.4e-17 Score=109.73 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=64.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
+.+|+++|.||||+|||...+.+++++|+++ .++++|+||||...+. .||+++.+|.|+ ++.+++.+++..
T Consensus 169 a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~ 244 (316)
T COG0444 169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244 (316)
T ss_pred hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcC
Confidence 5799999999999999999999999999998 5999999999999765 699999999999 787777776654
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=3e-16 Score=102.66 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=55.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|++++.||||++||.++.++++++++++ .+.|+|+||||+..+.+|||++.+..|+
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 5799999999999999999999999999998 4889999999999999999999999884
No 6
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.3e-16 Score=103.75 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=61.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
+.+|.++|||||||+||+..++++++.++++ . +.|+|++||+.+.+. +||+++.+.+|+ +..|.+.+++..
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 3579999999999999999999999999998 3 689999999998875 599999999998 666766655543
No 7
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=1.1e-15 Score=100.54 Aligned_cols=69 Identities=39% Similarity=0.677 Sum_probs=62.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~ 74 (80)
+++|++++|||||++||+.....+.+.++++ .+.++|+|||+.+.+..||+++.+++. .+++.|++.++
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~~--~~~~~~~~~~~ 245 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYRD--QECNSSKVLTL 245 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEec--CCCCcceEEec
Confidence 3568999999999999999999999999998 489999999999888889999999997 67888888876
No 8
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.65 E-value=1.7e-16 Score=113.78 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=65.1
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
-+++|++||+||||++||...+.++++.|+++ .|+++|+||||+.... .||+++.+++|+ ++.|.+.+++..
T Consensus 169 La~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 169 LALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence 35899999999999999999999999999998 6999999999999876 599999999999 788887777653
No 9
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=5.4e-16 Score=101.68 Aligned_cols=70 Identities=21% Similarity=0.110 Sum_probs=60.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.. ..||+++.+..|+ ...+...++..
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 5799999999999999999999999999998 778999999998876 5799999999887 55555554443
No 10
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.63 E-value=6.9e-16 Score=100.17 Aligned_cols=68 Identities=19% Similarity=0.146 Sum_probs=58.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+.+|+ ...+...++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 4689999999999999999999999999987 6789999999988764 699999999887 444444443
No 11
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.63 E-value=3e-16 Score=109.72 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=62.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeeecCC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRVHKA 75 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~~~~ 75 (80)
+++|+++||||||++||+.++.+++++|+++ .+.|+|++||+.+.+ ..||+++.+.+|+ +..+...++++++
T Consensus 155 ~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~ 230 (402)
T PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230 (402)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcH
Confidence 5799999999999999999999999999998 588999999999887 5799999999988 6666666655443
No 12
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.63 E-value=1.2e-15 Score=98.60 Aligned_cols=59 Identities=24% Similarity=0.149 Sum_probs=53.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+..|+
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 217 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCE
Confidence 4689999999999999999999999999998 4489999999988754 699999999886
No 13
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.62 E-value=4.3e-16 Score=114.89 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+.+|+++|||||||+||+.+++.+.+.|.++ +++|+|+|||+......||+++.+.+|+ +..|+-.+++.
T Consensus 625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 5799999999999999999999999999999 8999999999999999999999999999 66666554443
No 14
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=9.1e-16 Score=99.75 Aligned_cols=68 Identities=22% Similarity=0.118 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+. .||+++.+.+|+ ...+....+
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 4789999999999999999999999999987 3 789999999988764 699999999887 444444443
No 15
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.62 E-value=1.9e-15 Score=94.56 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=53.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+....||+++.+.+|
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 171 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDG 171 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 5789999999999999999999999999988 588999999998887789999999876
No 16
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.62 E-value=1.8e-15 Score=97.36 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=54.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+....||+++.+.+|+
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~ 215 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGR 215 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCe
Confidence 4689999999999999999999999999998 6689999999988777899999998874
No 17
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.62 E-value=8.3e-16 Score=110.64 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=60.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+++|+++|||||||+||+++++++.+.+++. +++|+|+|||+++....||+++.+.+|+ .+.|+-.++
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHH
Confidence 5799999999999999999999999999998 8999999999999999999999999987 555554433
No 18
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=6.3e-16 Score=102.98 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=59.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.++++ .+.|+|++||+.+....||+++.+++|+ ...+...++
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 4789999999999999999999999999987 5899999999988877899999999987 444444443
No 19
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.62 E-value=6e-16 Score=100.23 Aligned_cols=66 Identities=23% Similarity=0.165 Sum_probs=56.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.++++ .+.++|++||+++.+ ..||+++.+..|+ ...+...
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 218 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPE 218 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHH
Confidence 4689999999999999999999999999988 588999999998755 5799999999886 3434333
No 20
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.62 E-value=1.9e-15 Score=97.05 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=52.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.++++ .+.++|++||+.+.+. .||+++.+..|
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRG 214 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4789999999999999999999999999987 5789999999988775 69999999876
No 21
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.62 E-value=1.4e-15 Score=97.75 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=53.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.++|++||+.+....||+++.+..|
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G 216 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCC
Confidence 5789999999999999999999999999988 4 78999999998877789999999876
No 22
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.62 E-value=1.8e-15 Score=96.83 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=52.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+..|
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 5789999999999999999999999999988 5889999999988775 59999999776
No 23
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.61 E-value=1.1e-15 Score=99.32 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=58.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+++.+..||+++.+..|+ ...+...+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~ 222 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDE 222 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4689999999999999999999999999998 8899999999998887799999999887 44444333
No 24
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.2e-15 Score=96.66 Aligned_cols=59 Identities=19% Similarity=0.094 Sum_probs=53.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.++|++||+.+.+ ..||+++.+.+|+
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~ 208 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGR 208 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 5789999999999999999999999999987 3 78999999998875 5699999998874
No 25
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.61 E-value=3e-15 Score=94.00 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=54.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+..+..+.+.++++ ++.++|++||+......||+++.+..|+
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 173 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGK 173 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999988 8899999999988887899999998874
No 26
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=5.6e-16 Score=100.86 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=58.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh-HhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF-YFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~-~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+. ...||+++.+.+|+ ...+....+
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 4689999999999999999999999999987 58999999999875 46799999999887 455554444
No 27
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.1e-15 Score=100.21 Aligned_cols=68 Identities=22% Similarity=0.147 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...++
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4689999999999999999999999999998 778999999998876 5699999999887 444444443
No 28
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.61 E-value=8.1e-16 Score=110.50 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=60.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+++|+++|||||||+||++++.++.+.+.+. +++|+|+|||+++....||+++.+.+|+ .+.|+.+++
T Consensus 496 l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 5799999999999999999999999999988 8899999999999999999999999987 554544433
No 29
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.61 E-value=9.4e-16 Score=103.70 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=58.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||+|||+.++.++.+.++++ .+.|+|++||+++.+. .||+++.+.+|+ +..++..+
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 4789999999999999999999999999998 5899999999988764 699999999987 55554443
No 30
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.61 E-value=6.8e-16 Score=100.62 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||++||+.++..+.+.++++ ++.++|++||+.+... .||+++.+.+|+ ...+....
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 5789999999999999999999999999998 7789999999988775 699999999887 44444443
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.61 E-value=6.4e-16 Score=101.82 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=58.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhc-CceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFH-SDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~-~d~~~~i~~~~-~~~~~~~~~ 71 (80)
..+|++||+|||||+||...+.+++++|.++ .+.|+|+||||...+.+ |||++.+++|. ++......+
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l 229 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh
Confidence 3589999999999999999999999999998 57899999999998874 99999999997 554444443
No 32
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=102.07 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=59.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.|+|++||+++.+ ..||+++.+.+|+ ...+...+++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4689999999999999999999999999987 589999999999876 5799999999987 5555554433
No 33
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.61 E-value=2.8e-15 Score=96.50 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=53.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+....+|+++.+..|+
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~ 218 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQ 218 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCE
Confidence 5789999999999999999999999999987 3789999999998877789999998774
No 34
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=101.13 Aligned_cols=69 Identities=25% Similarity=0.187 Sum_probs=58.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+.+|+ ...+...++.
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 4789999999999999999999999999988 578999999998877 4699999999887 4445444433
No 35
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.7e-15 Score=98.52 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+. .||+++.+..|+ ...+...+
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 4689999999999999999999999999987 3 789999999988776 799999999887 44444433
No 36
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.61 E-value=2.4e-15 Score=96.99 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=53.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+. .||+++.+..|+
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCE
Confidence 4789999999999999999999999999988 3 899999999998776 799999998874
No 37
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=103.94 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=59.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++|+||||++||+.++.++++.|+++ .+.++|+|||+...+ ..||+++.++.|+ ++.+...+++
T Consensus 169 ~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 169 ACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 4689999999999999999999999999998 389999999999877 4799999999998 5655554443
No 38
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.61 E-value=2.6e-15 Score=96.29 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=52.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+.+. .||+++.+..|
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 4789999999999999999999999999988 5899999999988765 69999998765
No 39
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.6e-15 Score=102.70 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=59.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+..+..+.+.|+++ .+.|+|++||+.+.+ ..||+++.+..|+ +..+...++.
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 4689999999999999999999999999988 589999999998865 5799999999987 5555554443
No 40
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.8e-15 Score=99.46 Aligned_cols=69 Identities=20% Similarity=0.054 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+++.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 4789999999999999999999999999998 778999999999876 4699999999887 5555555444
No 41
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=2.1e-15 Score=97.84 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=57.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+....||+++.+..|+ ...+.
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~ 219 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGT 219 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCC
Confidence 4789999999999999999999999999998 8889999999988877799999999986 44333
No 42
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.60 E-value=1.5e-15 Score=102.37 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CC-ceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PK-MNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~-~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||+||||..+.++.+.|+++ ++ ++|+++||.++.+. .||+++.+.+|+ +..+....
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 4689999999999999999999999999999 45 79999999988765 599999999998 55554443
No 43
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.60 E-value=1.4e-15 Score=102.41 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=56.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+.+. .||+++.+.+|+ ...+..
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~ 208 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTP 208 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 4789999999999999999999999999988 6799999999988765 699999999887 444433
No 44
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.60 E-value=1.8e-15 Score=97.35 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=53.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+.++..+.+.|+++ .+.++|++||+.+.. ..||+++.++.|+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGR 209 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCe
Confidence 5789999999999999999999999999988 578999999998875 5699999998886
No 45
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=4.4e-15 Score=92.82 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=53.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+..+.++.+.++++ +++++|++||+.+....||+++.+.+|
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCC
Confidence 4689999999999999999999999999988 779999999998877669999998765
No 46
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.60 E-value=2.9e-15 Score=95.76 Aligned_cols=59 Identities=20% Similarity=0.087 Sum_probs=53.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ .+.++|++||+.+... .||+++.+..|+
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 4789999999999999999999999999987 5789999999988774 699999998875
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.8e-15 Score=98.62 Aligned_cols=68 Identities=18% Similarity=0.034 Sum_probs=57.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.. ..||+++.+..|+ ...+....+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 4789999999999999999999999999988 3 78999999998865 5699999998886 444444433
No 48
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.60 E-value=4.5e-15 Score=94.91 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=54.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+..+..+.+.|+++ ++.++|++||+.+....||+++.+.+|+
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~ 200 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGE 200 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 4689999999999999999999999999998 8899999999988876799999998875
No 49
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=2.5e-15 Score=97.22 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=55.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+..+..+.+.++++ ++.++|++||+......||+++.+..|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (229)
T cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGK 214 (229)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCe
Confidence 5789999999999999999999999999998 8899999999988877799999998886
No 50
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.60 E-value=2.4e-15 Score=97.85 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=55.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+..+.++.+.|+++ ++.++|++||+.+....||+++.+..|+
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~ 214 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQ 214 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 4689999999999999999999999999988 8899999999988877899999999986
No 51
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.9e-15 Score=98.97 Aligned_cols=70 Identities=20% Similarity=0.023 Sum_probs=59.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+.+|+ ...+...++..
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 4789999999999999999999999999998 778999999998765 5799999999987 55555555443
No 52
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.60 E-value=2.1e-15 Score=100.98 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=61.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+.+|++++|||||++||+.+...+.+.|++. .++|+|+|||+.+....||+++.+++|+ +..++...++.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence 5789999999999999999999999999988 8899999999998877799999999988 66666655544
No 53
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.1e-15 Score=103.63 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=64.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
+.+|++|+.|||||+|||++.+.++++|++. -+.|+++|||.++... .|||+..+..|+ ++.|++.+++..
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 4689999999999999999999999999998 5999999999999986 599999999999 888888877754
No 54
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.5e-15 Score=103.38 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=58.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++.++.+.|+++ ++.|+|++||+++.+ ..||+++.+..|+ +..++...
T Consensus 192 ~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~ 262 (320)
T PRK13631 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYE 262 (320)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4789999999999999999999999999987 689999999999865 5799999999987 55555543
No 55
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.9e-15 Score=103.14 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=58.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++|+||||++||+..+.++.+.|+++ .+.++|+|||+...+. .||+++.++.|+ +..+...++
T Consensus 174 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i 246 (330)
T PRK15093 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246 (330)
T ss_pred HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 4689999999999999999999999999998 3899999999998875 699999999998 555554443
No 56
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.59 E-value=2.5e-15 Score=97.78 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=55.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-c-CceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-H-SDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~-~d~~~~i~~~~-~~~~~ 67 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+... . ||+++.+.+|+ ...+.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 4789999999999999999999999999988 5789999999998875 4 79999998886 44333
No 57
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.6e-15 Score=101.23 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=59.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.|+|++||+.+....||+++.+..|+ ...+....+.
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4789999999999999999999999999988 3 899999999988777899999999887 4445544433
No 58
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.3e-15 Score=99.31 Aligned_cols=69 Identities=23% Similarity=0.095 Sum_probs=59.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...++.
T Consensus 172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 4799999999999999999999999999998 778999999998876 4699999999987 4555544443
No 59
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.5e-15 Score=97.52 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=56.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.++|++||+.+.+. .||+++.+..|+ ...+..
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 4789999999999999999999999999987 3 789999999998764 699999999887 443433
No 60
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=4.4e-15 Score=95.14 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=53.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.|+|++||+.+... .||+++.+..|+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 5789999999999999999999999999998 6799999999988764 699999998874
No 61
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.59 E-value=1.6e-15 Score=108.55 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=59.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+++||+++||||||+||+.+++++++.|++. +++|+|+|||++.....||+++.+..|+ ...++..+
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 5799999999999999999999999999988 8899999999999998999999998876 44444443
No 62
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.59 E-value=5.8e-15 Score=91.87 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=53.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+.+++.+.+.++++ ++.++|++||+...+ ..||+++.+..|+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 159 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5789999999999999999999999999988 588999999998865 4699999998774
No 63
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.6e-15 Score=99.00 Aligned_cols=68 Identities=18% Similarity=0.074 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.|+|++||+.+.+ ..||+++.+..|+ ...+....+
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4689999999999999999999999999988 779999999998876 5699999999887 444444443
No 64
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.59 E-value=1.7e-15 Score=102.07 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+.+. .||+++.+.+|+ ...+....
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4789999999999999999999999999988 6889999999988764 699999999887 44444433
No 65
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.59 E-value=1.7e-15 Score=103.91 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=59.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||+|||+.++.++.+.|+++ .+.|+|++||+.+.+. .||+++.+++|+ +..++..++
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 4689999999999999999999999999998 6899999999988774 699999999987 555554443
No 66
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.2e-15 Score=101.02 Aligned_cols=68 Identities=21% Similarity=0.095 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++.++.+.++++ + +.|+|++||+.+.. ..||+++.+..|+ ...+...++
T Consensus 160 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 4689999999999999999999999999988 3 79999999998876 5799999999987 554544443
No 67
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.59 E-value=3.2e-15 Score=97.42 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=57.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+ ..||+++.+.+|+ ...+....
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHH
Confidence 4789999999999999999999999999987 3 78999999998876 5799999999887 44444433
No 68
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.59 E-value=1.8e-15 Score=109.01 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=60.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+++|+++|||||||+||+++.+.+.+.++++ +++|+|+|||++.....||+++.+.+|+ ...|+..++
T Consensus 492 l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 4799999999999999999999999999988 8899999999999998999999999987 555554443
No 69
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.59 E-value=4.8e-15 Score=94.66 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=53.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+.++..+.+.++++ ++.++|++||+++... .||+++.+.+|+
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 203 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGA 203 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4689999999999999999999999999988 6789999999988765 699999998763
No 70
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.3e-15 Score=102.77 Aligned_cols=69 Identities=13% Similarity=0.026 Sum_probs=59.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++||+||||++||...+.++++.|+++ .+.++|+|||+...+. .||+++.++.|+ ++.+...+++
T Consensus 170 ~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 170 MLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 4689999999999999999999999999988 3899999999999876 699999999998 5555554443
No 71
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.59 E-value=2.1e-15 Score=103.00 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=59.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++|+||||++||..++..+++.|+++ .+.++|+|||+...+. .||+++.++.|+ +..+...+++
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4689999999999999999999999999988 3899999999998875 699999999998 5656555444
No 72
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.5e-15 Score=98.59 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=59.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...++.+
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence 4689999999999999999999999999988 678999999998875 4699999999987 55555555443
No 73
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.59 E-value=2.7e-15 Score=99.31 Aligned_cols=69 Identities=9% Similarity=0.081 Sum_probs=59.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ . +.++|++||+.+.+. .||+++.+.+|+ ...+....+.
T Consensus 166 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 166 AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 4689999999999999999999999999987 3 899999999998775 699999999887 4555554444
No 74
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.59 E-value=3.1e-15 Score=96.22 Aligned_cols=59 Identities=19% Similarity=0.056 Sum_probs=54.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+++.+. .||+++.+..|+
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 5789999999999999999999999999998 7789999999998775 699999998886
No 75
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.59 E-value=2.9e-15 Score=98.05 Aligned_cols=68 Identities=24% Similarity=0.073 Sum_probs=58.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+++.+ ..||+++.+.+|+ ...+...++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4689999999999999999999999999998 668999999999866 5799999999987 444444433
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.59 E-value=2.8e-15 Score=97.73 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=58.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++++|||||++||+.++..+.+.|+++ ++.++|++||+.+... .||+++.+..|+ ...+....+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 4789999999999999999999999999988 5899999999988774 699999999887 444444433
No 77
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.59 E-value=2.1e-15 Score=110.47 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=59.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+++|+++|||||||+||+++++++.+.+.+. +++|+|+|||+++....||+++.+.+|+ .+.|+..
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~ 684 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 5799999999999999999999999999998 8899999999999999999999999987 5555443
No 78
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.59 E-value=5.1e-15 Score=94.82 Aligned_cols=58 Identities=12% Similarity=0.268 Sum_probs=52.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+... .||+++.+..|
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 212 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERG 212 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4789999999999999999999999999987 5789999999988775 69999999776
No 79
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.59 E-value=5.8e-15 Score=96.05 Aligned_cols=66 Identities=21% Similarity=0.104 Sum_probs=56.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++.++.+.|+++ + +.++|++||+++.+ ..||+++.+.+|+ ...+...
T Consensus 130 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 130 SIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence 4789999999999999999999999999987 3 78999999998875 4699999999887 4444443
No 80
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.59 E-value=3.1e-15 Score=97.91 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=57.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+...+. .||+++.+.+|+ ...+....
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 4689999999999999999999999999988 5889999999988764 699999999887 44444433
No 81
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.59 E-value=5.4e-15 Score=95.03 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=53.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+.+|+
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGR 213 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 4789999999999999999999999999988 588999999998765 4699999998874
No 82
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.4e-15 Score=108.04 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=61.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
++++++++||||||+||.+++..+.+.+.++ +++|++++||++.....+|+++.++.|+ +..+...+.
T Consensus 472 l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L 541 (559)
T COG4988 472 LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL 541 (559)
T ss_pred cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHH
Confidence 4679999999999999999999999999999 8999999999999999999999999998 666655544
No 83
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.59 E-value=2.5e-15 Score=103.32 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=59.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++|+||||++||+.+...+++.|+++ + +.|+|++||+++.+ ..||+++.+..|+ +..+...+++
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4789999999999999999999999999998 3 79999999999887 4699999999988 5555555443
No 84
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.59 E-value=3.1e-15 Score=98.53 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=57.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+...+. .||+++.+..|+ +..+...
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 4689999999999999999999999999988 5899999999998876 699999999887 4444433
No 85
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.59 E-value=2.6e-15 Score=102.69 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=59.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++|+||||++||..++.++++.|+++ .+.++|+|||+...+. .||+++.++.|+ +..+....++
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 177 ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4789999999999999999999999999988 3899999999998875 699999999987 5555544443
No 86
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=5.4e-15 Score=92.54 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=53.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.++.++.+.|+++ ++.++|++||+..... .||+++.+..|
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g 171 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNG 171 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 4799999999999999999999999999998 5689999999988766 79999999876
No 87
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.3e-15 Score=107.60 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=63.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
++++|+++|||||.|||+.+++++++.+.+. +++|+|+|||+......+|+|+.+.+|+ +.+|...+.+.
T Consensus 490 L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 4689999999999999999999999999998 9999999999999999999999999998 77777666554
No 88
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.5e-15 Score=97.89 Aligned_cols=68 Identities=19% Similarity=0.083 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+..|+ ...+...++
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 4789999999999999999999999999988 7899999999988765 699999999987 444444443
No 89
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.4e-15 Score=98.12 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=57.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+..+..+.+.++++ ++.++|++||+.+.. ..||+++.+..|+ ...+...++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 4789999999999999999999999999887 588999999998655 5799999999887 444444433
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=4.9e-15 Score=98.70 Aligned_cols=65 Identities=15% Similarity=0.062 Sum_probs=57.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++.++.+.++++ ++.|+|++||+.+.. ..||+++.+++|+ +..+..
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 4789999999999999999999999999988 589999999999876 5799999999987 544444
No 91
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.58 E-value=2.5e-15 Score=97.81 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=57.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+..||+++.+..|+ ...+...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAA 217 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHH
Confidence 5789999999999999999999999999987 3789999999998777799999999886 4444433
No 92
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=4.4e-15 Score=96.42 Aligned_cols=59 Identities=24% Similarity=0.270 Sum_probs=54.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+....||+++.+.+|+
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~ 212 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGR 212 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCE
Confidence 5789999999999999999999999999988 7889999999988877799999999886
No 93
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=4.2e-15 Score=95.80 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=53.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+. .||+++.+..|+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 5789999999999999999999999999987 4 789999999988765 699999998886
No 94
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.58 E-value=5.8e-15 Score=94.69 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=52.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+..+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 4689999999999999999999999999987 6789999999988764 69999999764
No 95
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.1e-15 Score=100.39 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=57.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+..+.++.+.|+++ + +.|+|++||+.+.+ ..||+++.+.+|+ +..+...+
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 4789999999999999999999999999988 3 89999999998876 4799999999887 44444443
No 96
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.58 E-value=3.2e-15 Score=107.81 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~ 68 (80)
+++|+++|||||||+||+.+++.+++.+++. +++|+|+|||+++.+..||+++.+..|+ ...+..
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 5799999999999999999999999999988 8899999999999998999999999887 444443
No 97
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.4e-15 Score=99.85 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=59.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.|+|++||+.+... .||+++.+.+|+ +..+....+.
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 4789999999999999999999999999988 3 899999999998875 799999999887 5555554433
No 98
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.6e-15 Score=98.29 Aligned_cols=69 Identities=20% Similarity=0.122 Sum_probs=59.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++++|||||++||+.++..+.+.|+++ ++.++|++||+.+.. ..||+++.+..|+ ...+...++.
T Consensus 171 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 171 ATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 4799999999999999999999999999998 778999999998876 4699999999887 4555544443
No 99
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.6e-15 Score=101.88 Aligned_cols=71 Identities=23% Similarity=0.058 Sum_probs=62.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
+.+|+++||||||++||+.+...+.+.|+++ ++.|+|++||+++.+. .||+++.++.|+ ...+....+++.
T Consensus 241 ~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 241 ALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 5789999999999999999999999999988 7899999999999876 599999999998 666776666543
No 100
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=4.8e-15 Score=95.54 Aligned_cols=59 Identities=20% Similarity=0.132 Sum_probs=52.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEe--eec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGIT--LKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~--~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ .+.++|++||+++.+ ..||+++.+. .|+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 4689999999999999999999999999987 378999999998865 5799999998 454
No 101
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=7.1e-15 Score=92.36 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=52.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.++..+.+.++++ + +.++|++||+.+... .||+++.+..|
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 5789999999999999999999999999988 4 689999999988876 69999998765
No 102
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.4e-15 Score=97.92 Aligned_cols=69 Identities=19% Similarity=0.060 Sum_probs=59.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+..|+ ...+....+.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 4789999999999999999999999999998 6689999999998764 699999999887 5555554443
No 103
>PRK10908 cell division protein FtsE; Provisional
Probab=99.58 E-value=8.4e-15 Score=94.53 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=53.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+.+. .||+++.+..|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGH 214 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4789999999999999999999999999988 5789999999988775 599999998875
No 104
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.58 E-value=7.2e-15 Score=94.96 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=53.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+..+..+.+.++++ ++.++|++||+++....||+++.+..|
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 5789999999999999999999999999998 778999999998887779999999776
No 105
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.58 E-value=5.5e-15 Score=96.56 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=53.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhc--CceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFH--SDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~--~d~~~~i~~~~ 62 (80)
+++|+++||||||++||+.++..+.+.++++ .+.|+|++||+...... +|+++.+..|+
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~ 223 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGR 223 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCe
Confidence 5789999999999999999999999999887 57899999999887764 89999998876
No 106
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.8e-15 Score=97.57 Aligned_cols=68 Identities=22% Similarity=0.069 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++++|||||++||+.++.++.+.|+++ ++.++|++||+++.+ ..||+++.+..|+ ...+...++
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 4689999999999999999999999999998 789999999998876 4799999998887 444444433
No 107
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.58 E-value=2e-15 Score=97.81 Aligned_cols=67 Identities=13% Similarity=-0.014 Sum_probs=56.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+.+ ..||+++.+ +|+ ...+...++
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 5799999999999999999999999999988 588999999998865 469999988 666 444444433
No 108
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.8e-15 Score=99.80 Aligned_cols=67 Identities=19% Similarity=0.084 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+ ..||+++.+..|+ ...++...
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4689999999999999999999999999988 589999999998876 5799999999887 44444443
No 109
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.4e-15 Score=100.00 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=53.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.++.|+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 4789999999999999999999999999987 588999999998875 5799999998886
No 110
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.58 E-value=7.2e-15 Score=94.15 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=53.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+.++..+.+.++++ + +.++|++||+.+... .||+++.+.+|+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~ 208 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 4789999999999999999999999999987 3 789999999988764 699999998874
No 111
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.58 E-value=7.7e-15 Score=92.35 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=53.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.++|++||+.+.. ..||+++.+..|+
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 175 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4789999999999999999999999999988 3 78999999998876 5799999998874
No 112
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.58 E-value=9.8e-15 Score=93.97 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=54.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+......||+++.+..|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGR 214 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCe
Confidence 4689999999999999999999999999998 7789999999998877799999998875
No 113
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.1e-15 Score=99.12 Aligned_cols=67 Identities=24% Similarity=0.080 Sum_probs=57.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+..+..+.+.|+++ ++.|+|++||+.+.+ ..||+++.+..|+ ...+....
T Consensus 180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4789999999999999999999999999998 778999999998865 5799999999887 44444443
No 114
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.58 E-value=4.5e-15 Score=97.79 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.++|++||+.+... .||+++.+.+|+ ...+....+
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 167 VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 4789999999999999999999999999987 3 789999999998875 699999999987 444444443
No 115
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.8e-15 Score=97.76 Aligned_cols=69 Identities=23% Similarity=0.135 Sum_probs=58.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...++.
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 4689999999999999999999999999998 778999999998876 5799999999887 4445544433
No 116
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=6.5e-15 Score=94.60 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=53.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.++|++||+.+.. ..||+++.+.+|+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 5789999999999999999999999999987 3 78999999998876 4699999998875
No 117
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4e-15 Score=97.62 Aligned_cols=68 Identities=15% Similarity=0.029 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+..+..+.+.|+++ ++.++|++||+.+.+. .||+++.++.|+ ...+...++
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 4789999999999999999999999999988 7899999999988765 689999999886 444444433
No 118
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=7.8e-15 Score=93.96 Aligned_cols=59 Identities=25% Similarity=0.230 Sum_probs=53.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+... .||+++.+.+|+
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 206 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCE
Confidence 4789999999999999999999999999987 3789999999998764 699999998875
No 119
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.5e-15 Score=98.56 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=57.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|.++ + +.++|++||+...+ ..||+++.+..|+ ...+...+
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 4789999999999999999999999999987 3 78999999998876 5699999999887 44444443
No 120
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.1e-15 Score=97.38 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+..|+ ...+....
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4689999999999999999999999999998 7789999999988765 699999999987 44444443
No 121
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=4.2e-15 Score=99.28 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ . +.|+|++||+++....||+++.+..|+ ...+...
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 4789999999999999999999999999988 3 799999999988877899999999887 4444433
No 122
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.57 E-value=6.3e-15 Score=95.16 Aligned_cols=59 Identities=25% Similarity=0.197 Sum_probs=54.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+.++..+.+.|+++ ++.++|++||+++.. ..||+++.+..|+
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 201 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGV 201 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCE
Confidence 5789999999999999999999999999988 578999999999876 5799999998886
No 123
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=6.5e-16 Score=101.65 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=61.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecCC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHKA 75 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~~ 75 (80)
+++|++++.|||+|+|||.+.+++++.|++. .|.|+|+..|+.+.+. +|+|++++..|+ +..+..++ ++.+
T Consensus 163 ~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e-l~~~ 238 (258)
T COG3638 163 VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE-LTDE 238 (258)
T ss_pred hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh-hhHH
Confidence 5899999999999999999999999999998 6899999999999875 799999999999 55555544 5443
No 124
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.57 E-value=4.8e-15 Score=96.00 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=57.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||++||+.++..+.+.|.++ + +.|+|++||+.+.+. .||+++.+..|+ ...+....
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 4689999999999999999999999999987 3 789999999998776 699999999887 44444433
No 125
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.57 E-value=9.4e-15 Score=94.53 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=53.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+....||+++.+..|+
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~ 223 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQ 223 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 4789999999999999999999999999987 3 789999999988877799999998774
No 126
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.7e-15 Score=98.75 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=57.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+ ..||+++.+..|+ ...+....
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4789999999999999999999999999988 578999999998876 4699999999886 44444433
No 127
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=5.2e-15 Score=98.57 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=59.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++++|||||++||+.++..+.+.++++ .+.++|++||+.+... .||+++.++.|+ ...+....+.
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 4789999999999999999999999999988 5899999999988765 799999999887 4555544433
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.6e-15 Score=98.42 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=57.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.|+|++||+.+....||+++.+..|+ ...+...+
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHH
Confidence 4789999999999999999999999999987 3 789999999988776799999999887 44444443
No 129
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.6e-15 Score=97.26 Aligned_cols=68 Identities=19% Similarity=0.034 Sum_probs=58.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+... .||+++.+..|+ ...+....+
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 4789999999999999999999999999988 7789999999998754 699999999887 444444433
No 130
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.57 E-value=3.3e-15 Score=105.77 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=57.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+..+.++.+.|+++ .+.++|++||+.+.+. .||+++.+.+|+ ...+...
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 4689999999999999999999999999998 5789999999988764 699999999887 4444433
No 131
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.8e-15 Score=96.70 Aligned_cols=67 Identities=21% Similarity=0.084 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||++||+.++..+.+.|+++ ++.|+|++||+.+.+ ..||+++.+..|+ ...+...+
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 4789999999999999999999999999998 778999999998865 4699999999887 44444443
No 132
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.57 E-value=9.4e-15 Score=93.34 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=54.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh--cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF--HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~--~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+.++..+.+.|+++ .+.++|++||++.... .||+++.+..|+
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 182 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGR 182 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCE
Confidence 4789999999999999999999999999988 4789999999998876 699999999886
No 133
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=8.2e-15 Score=95.25 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=52.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+....+++++.+..|+
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~ 222 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGR 222 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCE
Confidence 4689999999999999999999999999987 3789999999998877778998887774
No 134
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.7e-15 Score=98.85 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=59.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.++++ . +.|+|++||+.+....||+++.++.|+ ...+...++.
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 4689999999999999999999999999988 3 899999999988877899999999987 5555544443
No 135
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.7e-15 Score=99.29 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=58.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++.++.+.++++ .+.|+|++||+.+.+ ..||+++.+..|+ +..+....++
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4689999999999999999999999999987 379999999998876 5799999999987 5555544433
No 136
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.57 E-value=1.1e-14 Score=93.30 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=52.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+... .||+++.+..|
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g 211 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4689999999999999999999999999988 5789999999988774 69999999876
No 137
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.57 E-value=4.4e-15 Score=96.44 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.++|++||+.+... .||+++.+..|+ ...+...++
T Consensus 141 ~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 141 LLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4789999999999999999999999999987 3 789999999988774 699999999887 444444433
No 138
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=8.1e-15 Score=93.82 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=53.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.... ..||+++.+..|+
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCE
Confidence 4789999999999999999999999999987 578999999998876 4699999998874
No 139
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=1.9e-14 Score=94.66 Aligned_cols=57 Identities=35% Similarity=0.519 Sum_probs=53.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+|+++++||||++||+.....+.+.++++ ++.++|++||+.+....||+++.++..
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~ 244 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFV 244 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEee
Confidence 578999999999999999999999999998 888999999998888899999999865
No 140
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.57 E-value=7.7e-15 Score=96.15 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=53.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-c-CceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-H-SDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~-~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+... . ||+++.+..|+
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~ 229 (252)
T CHL00131 167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGK 229 (252)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCE
Confidence 4689999999999999999999999999988 5899999999988775 4 89999998886
No 141
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.3e-15 Score=97.04 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+..|+ ...+...+
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 4789999999999999999999999999998 7789999999988764 699999999887 44444443
No 142
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=6.8e-15 Score=96.01 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=57.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+..... .||+++.+..|+ ...+...
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 4689999999999999999999999999987 5899999999988874 699999999886 4444433
No 143
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.7e-15 Score=96.82 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.. ..||+++.+.+|+ ...+....+.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5789999999999999999999999999987 3 78999999999876 4699999999887 4444444333
No 144
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=6.2e-15 Score=97.76 Aligned_cols=68 Identities=19% Similarity=0.068 Sum_probs=58.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...++
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 4789999999999999999999999999998 778999999998877 4699999999887 444444443
No 145
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=6.8e-15 Score=96.41 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+... .||+++.+..|+ ...+...+
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4789999999999999999999999999998 7799999999988765 699999999887 44444443
No 146
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.8e-15 Score=99.71 Aligned_cols=67 Identities=16% Similarity=0.025 Sum_probs=56.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+ ..||+++.+..|+ ...++...
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4689999999999999999999999999987 378999999998865 5799999999887 44444433
No 147
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.57 E-value=1.1e-14 Score=91.84 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=52.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.++..+.+.++++ ++.++|++||+.+.+. .||+++.+..|
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G 180 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEG 180 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCC
Confidence 4789999999999999999999999999988 5789999999987664 69999999776
No 148
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.56 E-value=6.1e-15 Score=97.06 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=57.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.....+.+.|+++ ++.++|++||+++.. ..||+++.+.+|+ ...+...
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHH
Confidence 4689999999999999999999999999988 578999999999887 5799999999887 4444433
No 149
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.2e-14 Score=92.37 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=52.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh--HhcCceEEEEee-ec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF--YFHSDILFGITL-KM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~--~~~~d~~~~i~~-~~ 62 (80)
+.+|++++|||||++||+.++..+.+.++++ .+.++|++||+.+. ...||+++.++. |+
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 4789999999999999999999999999988 58999999999873 567999999987 64
No 150
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=6.3e-15 Score=97.98 Aligned_cols=68 Identities=19% Similarity=0.068 Sum_probs=58.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++.++.+.|+++ ++.++|++||+.+.+. .||+++.+..|+ ...+...++
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4689999999999999999999999999998 7789999999998764 699999999887 444554443
No 151
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.56 E-value=8.5e-15 Score=96.58 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+++....||+++.+..|+ ...+...
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPE 239 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 5789999999999999999999999999988 7899999999998877799999999887 4444443
No 152
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.7e-15 Score=101.26 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=56.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.|+|++||+++.+. .||+++.+.+|+ ...+...
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 4789999999999999999999999999988 3 789999999988765 699999999887 4444433
No 153
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=6.8e-15 Score=96.37 Aligned_cols=68 Identities=22% Similarity=0.098 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++++|||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...++..++
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 4789999999999999999999999999998 788999999998876 4799999999987 444444433
No 154
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.56 E-value=4.6e-15 Score=106.60 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=62.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++||+++||||||+||++++..+.+.+.+. +++|+++|+|+++....||+++.+++|+ .+.|+-.+.+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 5899999999999999999999999999987 7889999999999998999999999998 66666655443
No 155
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=6.7e-15 Score=97.77 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=56.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+..+..+.+.++++ . +.++|++||+.+.+ ..||+++.+..|+ ...+...+
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 5789999999999999999999999999987 3 78999999998875 5799999998886 44444433
No 156
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.56 E-value=7e-15 Score=96.50 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.. ..||+++.+..|+ ...+....+
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 4789999999999999999999999999987 3 78999999998876 5799999999987 444444433
No 157
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=6.3e-15 Score=98.23 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.++++ . +.|+|++||+.+.. ..||+++.++.|+ +..+...++
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 4689999999999999999999999999987 3 79999999998876 5799999999987 555544443
No 158
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.56 E-value=6.9e-15 Score=99.16 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||+|||+.++..+.+.++++ ++.++|++||+++.+ ..||+++.+.+|+ ...++..+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4789999999999999999999999999998 779999999998865 5799999999887 44444433
No 159
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.56 E-value=7.4e-15 Score=96.36 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=57.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.++++ .+.++|++||+.+... .||+++.+..|+ ...+..+.
T Consensus 164 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 164 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHH
Confidence 5799999999999999999999999999987 3799999999988776 699999999887 44444333
No 160
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.56 E-value=2.1e-14 Score=91.95 Aligned_cols=57 Identities=32% Similarity=0.599 Sum_probs=53.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+|++++|||||++||+.....+.+.++++ ++.++|++||+++....||+++.+++.
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~~ 191 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTMQ 191 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEec
Confidence 567999999999999999999999999998 778999999999888889999999987
No 161
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=7.9e-15 Score=96.08 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...+
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 4689999999999999999999999999998 778999999998864 5799999999887 44444433
No 162
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9e-15 Score=97.20 Aligned_cols=69 Identities=23% Similarity=0.137 Sum_probs=59.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...++.
T Consensus 184 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 5799999999999999999999999999998 778999999998876 4799999999987 4545544433
No 163
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.56 E-value=6.8e-15 Score=106.13 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=59.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+++|+++||||||++||+++++.+.+.+.+. +++|+|+|||+++....||+++.+++|+ .+.|+..+
T Consensus 491 l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence 5799999999999999999999999999998 8899999999999888899999999987 55454443
No 164
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=8e-15 Score=95.86 Aligned_cols=68 Identities=18% Similarity=0.064 Sum_probs=57.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+. .||+++.+..|+ ...++..++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 4789999999999999999999999999987 3 799999999988765 699999999887 444444433
No 165
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=1.6e-14 Score=91.39 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=53.2
Q ss_pred CC--CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 5 KP--SPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~--~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
.+ |+++||||||++||+.+.+.+.+.++++ .+.++|++||+.+....||+++.+..++
T Consensus 104 ~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 104 SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 46 9999999999999999999999999987 6899999999998887899999998863
No 166
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.56 E-value=1.6e-14 Score=93.77 Aligned_cols=59 Identities=24% Similarity=0.124 Sum_probs=53.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+.+. .||+++.+..|+
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 219 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4789999999999999999999999999987 5689999999988764 699999998774
No 167
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=7.6e-15 Score=97.96 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.|+|++||+++....||+++.+..|+ ...+....
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHH
Confidence 4789999999999999999999999999987 3 899999999988877799999999887 44454443
No 168
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=8.8e-15 Score=97.04 Aligned_cols=69 Identities=20% Similarity=0.100 Sum_probs=59.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++.++.+.|+++ ++.++|++||+++.. ..||+++.+..|+ ...+....+.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 179 AVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 4689999999999999999999999999998 778999999998876 5799999999987 5555555443
No 169
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.56 E-value=7.3e-15 Score=106.22 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=58.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+++|+++||||||++||+.+++.+.+.+.+. ++.|+|+|||+.+....||+++.+.+|+ ...|+..
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 5799999999999999999999999999988 8899999999999888899999999987 4444433
No 170
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=8.8e-15 Score=97.48 Aligned_cols=56 Identities=21% Similarity=0.123 Sum_probs=51.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGIT 59 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~ 59 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+...+ ..||+++.++
T Consensus 177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 177 AMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 4789999999999999999999999999998 778999999998876 4799999997
No 171
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.56 E-value=6.5e-15 Score=107.99 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=60.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+++|+++||||||++||+.+++++.+.++++ +++|+|++||+++....||+++.+.+|+ ...|+..++
T Consensus 609 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 609 VGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 5799999999999999999999999999998 8899999999999988899999999987 555544443
No 172
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.56 E-value=8.1e-15 Score=97.30 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=56.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+. .||+++.+..|+ ...+...
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHH
Confidence 4689999999999999999999999999987 3 789999999987664 699999998886 4444443
No 173
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1e-14 Score=97.77 Aligned_cols=68 Identities=21% Similarity=0.093 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.++.|+ ...+....+
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4789999999999999999999999999988 7789999999988864 699999999887 444444433
No 174
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.55 E-value=5.2e-15 Score=105.31 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=58.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+. .||+++.+..|+ ...+...+
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 4789999999999999999999999999998 6889999999988765 699999999887 44444443
No 175
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.55 E-value=7.4e-15 Score=107.81 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=59.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+++|+++|||||||+||+++++++.+.+++.+++|+|+|||+++....||+++.+.+|+ ...|+..++
T Consensus 627 l~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 627 LTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred hhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 57999999999999999999999999998766689999999999999999999999987 555554443
No 176
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=7.9e-15 Score=98.05 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ . +.++|++||+.+....||+++.++.|+ ...+....
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4689999999999999999999999999987 3 799999999988877899999999887 55454443
No 177
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.55 E-value=1.7e-14 Score=94.20 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=53.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++.++.+.|+++ .+.++|++||+++.+ ..||+++.+..|+
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 231 (236)
T cd03267 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231 (236)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 5789999999999999999999999999987 378999999999876 4699999998874
No 178
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.55 E-value=5.4e-15 Score=97.57 Aligned_cols=68 Identities=21% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
-+|+++++||||+||||-....+-++++++ -+.|+++||||.... ..||+++.+.+++ ...|+..++.
T Consensus 162 ldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 589999999999999999999999999998 489999999997665 5799999999998 6666665544
No 179
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=2.7e-15 Score=99.60 Aligned_cols=66 Identities=20% Similarity=0.118 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|.++|||||||||||-+.+.+.+.+.++ .|+|||++||+++-+. .||++..+.+|+ +..|.+.
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~ 215 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVE 215 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHH
Confidence 4689999999999999999999999999998 8999999999988775 699999999987 6655544
No 180
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.55 E-value=7.4e-15 Score=107.77 Aligned_cols=68 Identities=18% Similarity=0.076 Sum_probs=59.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+++|+++|||||||+||+.+++++.+.+++ .++|+|+|||+++....||+++.+.+|+ +..|+..+++
T Consensus 631 l~~p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 631 VRNPSILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred hhCCCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 579999999999999999999999999887 5789999999999999999999999988 5555554443
No 181
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.55 E-value=1.7e-14 Score=95.83 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+..... .||+++.+..|+ ...+...++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 167 AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 4789999999999999999999999999987 3 789999999988875 699999999887 455554443
No 182
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=8e-15 Score=95.76 Aligned_cols=65 Identities=18% Similarity=0.064 Sum_probs=56.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+ ..||+++.+.+|+ ...+..
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 220 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTP 220 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 5789999999999999999999999999987 3 79999999998865 5799999999887 444443
No 183
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.55 E-value=8.8e-15 Score=107.11 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=59.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+++|+++|||||||+||+.+++++.+.++++ ++|+|+|||+++....||+++.+.+|+ +..|+..+++
T Consensus 604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRTQAIVSESLERL-KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 5899999999999999999999999999876 569999999999999999999999988 5555544433
No 184
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.55 E-value=2e-14 Score=89.69 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=51.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.++.++.+.++++ +.++|++||+......||+++.+.++
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL-GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh-CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 5799999999999999999999999999876 57999999998877789999998776
No 185
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=3.7e-15 Score=98.68 Aligned_cols=65 Identities=25% Similarity=0.191 Sum_probs=56.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++..+.+.|+++ . +.++|++||+.+.+ ..||+++.+.+|+ ...+..
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~ 232 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTP 232 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 4789999999999999999999999999987 3 78999999998876 4799999999886 433433
No 186
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.4e-15 Score=96.59 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=59.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++++|||||++||+.++..+.+.|.++ ++.|+|++||+...+ ..||+++.+..|+ ...++..++.
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 5789999999999999999999999999988 779999999999877 5799999999887 5555555444
No 187
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.55 E-value=5e-15 Score=97.32 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.. ..||+++.+.+|+ ...+...
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 218 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 56999999999999999999999999988 578999999998855 5799999999887 4444433
No 188
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.55 E-value=1.2e-14 Score=95.65 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=57.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+ ..||+++.+.+|+ ...+...+
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 4789999999999999999999999999987 378999999998876 4799999999887 44444443
No 189
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.55 E-value=9.9e-15 Score=101.01 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+..+.++.+.+.++ .+.|+|++||+.+.+ ..||+++.++.|+ ...++..++
T Consensus 145 ~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 145 AAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 4799999999999999999999999999887 379999999998865 5799999999887 454554443
No 190
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.55 E-value=8.7e-15 Score=105.41 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+++|+++||||||++||+++.+++.+.++++ ++.|+|++||+.+....||+++.+.+|+ ...|+..+
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHH
Confidence 5799999999999999999999999999988 8899999999999888899999999887 55454433
No 191
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=8.1e-15 Score=97.39 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=56.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+++.|+++ + +.++|++||+.+....||+++.+..|+ ...+...
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHH
Confidence 4789999999999999999999999999987 3 489999999988777899999998886 3334333
No 192
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.55 E-value=9.7e-15 Score=96.84 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=56.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+... .||+++.+..|+ ...+...
T Consensus 165 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 235 (267)
T PRK15112 165 ILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTA 235 (267)
T ss_pred HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 4689999999999999999999999999987 3 789999999988876 599999998886 4444433
No 193
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=95.31 Aligned_cols=67 Identities=24% Similarity=0.092 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+...+. .||+++.+.+|+ ...+....
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 4689999999999999999999999999998 7789999999988774 799999999987 44444433
No 194
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.55 E-value=1.9e-14 Score=93.14 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=53.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeCh--hhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKP--QFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~--~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+. .....||+++.+..|+
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCE
Confidence 4689999999999999999999999999987 578999999997 4567899999998875
No 195
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.4e-14 Score=96.30 Aligned_cols=57 Identities=21% Similarity=0.174 Sum_probs=52.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~ 60 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+..
T Consensus 170 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 170 AIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 4789999999999999999999999999988 778999999998776 57999999986
No 196
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.54 E-value=1.8e-14 Score=91.76 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=49.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEE
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGI 58 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i 58 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+....||+++.+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 5789999999999999999999999999987 578999999998877789998753
No 197
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.3e-14 Score=95.82 Aligned_cols=68 Identities=21% Similarity=0.072 Sum_probs=57.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEee-----ec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITL-----KM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~-----~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+...+. .||+++.++. |+ +..+....+
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 243 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence 5789999999999999999999999999986 4899999999988764 6999999998 66 444444444
No 198
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.3e-14 Score=95.62 Aligned_cols=56 Identities=23% Similarity=0.148 Sum_probs=51.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGIT 59 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~ 59 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 4789999999999999999999999999988 678999999998876 5799999997
No 199
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.54 E-value=7.9e-15 Score=105.24 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=59.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+++|+++|||||||+||+.+++.+++.++++ +++|+|+|||++.....+|+++.+.+|+ ...++.+
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHH
Confidence 4799999999999999999999999999998 8899999999999888999999999987 5544433
No 200
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.9e-15 Score=97.78 Aligned_cols=70 Identities=23% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeeecC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
-+|.+|+||||||+|||-...++-+++.++ ++.|+++|||++.-+ +.+|+..+++.|+ ++.+...++++.
T Consensus 166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 479999999999999999999999999999 899999999998755 5699999999998 888877777754
No 201
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.54 E-value=2.4e-14 Score=94.92 Aligned_cols=59 Identities=22% Similarity=0.170 Sum_probs=53.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+ ..||+++.+.+|+
T Consensus 149 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~ 211 (257)
T PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211 (257)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4789999999999999999999999999987 378999999998876 4699999998886
No 202
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.54 E-value=2.6e-14 Score=90.98 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=52.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChh-h-HhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQ-F-YFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~-~-~~~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+.+++.+.+.|+++ ++.++|++||+.. . ...||+++.+..|+
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 4789999999999999999999999999988 5899999999975 3 45799999998874
No 203
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.54 E-value=9.7e-15 Score=104.36 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+..+..+.+.|+++ + +.++|+|||+.+.+. .||+++.+.+|+ ...++..
T Consensus 172 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 242 (529)
T PRK15134 172 LTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAA 242 (529)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 4789999999999999999999999999987 3 789999999988765 699999999887 4444443
No 204
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.54 E-value=5.6e-15 Score=98.56 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=57.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
.+|+++||||||++||+.++..+.+.++++ . +.++|++||+.+... .||+++.+..|+ ...+....+
T Consensus 171 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 589999999999999999999999999987 3 789999999988774 799999999887 444444433
No 205
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.4e-14 Score=94.04 Aligned_cols=66 Identities=21% Similarity=0.095 Sum_probs=58.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+++|++++|||||+|||..+.+++.++++++ .+.++|+.||.++.+. .||+++.+.+|. +..++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~ 218 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHH
Confidence 5799999999999999999999999999999 6999999999988876 799999999987 5545443
No 206
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=2.1e-14 Score=102.19 Aligned_cols=67 Identities=25% Similarity=0.234 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+..+.++.+.|+++ ++.++|++||+.+.+. .||+++.+.+|+ +..+...+
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 4789999999999999999999999999988 6789999999988765 699999999887 44444443
No 207
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.54 E-value=5.7e-15 Score=97.78 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=57.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+...+ ..||+++.+.+|+ ...+...+
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4789999999999999999999999999987 3 78999999998865 5799999999887 44444433
No 208
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.54 E-value=1.3e-14 Score=103.85 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=57.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
+++|+++||||||++||++++.++.+.++++ ++.|+|++||+.+....||+++.+.+|+ +..|.
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCC
Confidence 5799999999999999999999999999887 5799999999998888899999999887 44443
No 209
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.54 E-value=1.7e-14 Score=95.26 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcce
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~ 68 (80)
.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+. .||+++.+..|+ ...+..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCH
Confidence 489999999999999999999999999987 4789999999988765 799999999886 433333
No 210
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=1.4e-14 Score=103.13 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=56.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|++|||||||++||+.++..+.+.++++ ++.++|++||+.+.+ ..||+++.+..|+ ...+...
T Consensus 421 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 421 LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccc
Confidence 4689999999999999999999999999988 688999999998876 4699999999887 4444433
No 211
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.54 E-value=3e-14 Score=91.95 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=53.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+..+..+.+.|+++ .+.++|++||+.+....||+++.++.|
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g 217 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 4789999999999999999999999999987 379999999999877789999999876
No 212
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-14 Score=96.98 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=55.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+ +|+ ...+....+
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 4689999999999999999999999999988 578999999998765 579998766 665 444444433
No 213
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.54 E-value=1.4e-14 Score=99.71 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=57.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+..+..+.+.|+++ + +.++|++||+.+.+ ..||+++.+.+|+ ...+...+
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 4689999999999999999999999999987 3 78999999998876 4699999999887 44444433
No 214
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.54 E-value=2.1e-14 Score=102.14 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=56.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++.++.+.++++ .+.++|++||+.+.+. .||+++.+.+|+ ...+...
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVA 226 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcC
Confidence 4689999999999999999999999999988 6789999999988764 699999999886 4444433
No 215
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.8e-14 Score=95.44 Aligned_cols=56 Identities=21% Similarity=0.138 Sum_probs=51.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGIT 59 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~ 59 (80)
+.+|+++||||||++||+.++.++.+.|+++ ++.++|++||+.+.+ ..||+++.+.
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 4789999999999999999999999999998 778999999998865 5799999996
No 216
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.8e-14 Score=95.47 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=51.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGIT 59 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~ 59 (80)
+.+|+++||||||++||+..+..+.+.|+++ ++.++|++||+.+.+ ..||+++.++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 4689999999999999999999999999998 668999999998765 5799999998
No 217
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.54 E-value=2.9e-14 Score=92.80 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=49.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+++||||||++||+.++.++.+.++++ .+.++|++||+.+....||+++.+.++
T Consensus 159 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~ 214 (226)
T cd03270 159 VLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPG 214 (226)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCC
Confidence 699999999999999999999999987 688999999999888889999999544
No 218
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.54 E-value=1.3e-14 Score=103.78 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=59.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+++.|+++ + +.++|++||+.+.+. .||+++.+..|+ ...+...+++
T Consensus 441 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 441 ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred hCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 4789999999999999999999999999987 3 789999999988765 699999999987 4555554444
No 219
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.5e-14 Score=105.41 Aligned_cols=69 Identities=13% Similarity=-0.025 Sum_probs=59.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++|||||||++||+..+.++.+.|+++ .+.++|+|||+.+.+. .||+++.++.|+ +..+...+++
T Consensus 479 ~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 479 ALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 4789999999999999999999999999987 3789999999988765 699999999987 5555555544
No 220
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.4e-14 Score=99.64 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+..+..+.+.|+++ + +.++|++||+.+.+ ..||+++.+.+|+ ...+...++.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 4789999999999999999999999999988 3 78999999998765 5699999999887 4444444433
No 221
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.9e-14 Score=102.36 Aligned_cols=65 Identities=18% Similarity=0.115 Sum_probs=56.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++.++++.|+++ .+.++|++||+.+.+. .||+++.++.|+ ...+..
T Consensus 412 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~ 480 (501)
T PRK11288 412 SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480 (501)
T ss_pred ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence 4689999999999999999999999999988 6889999999988774 699999998886 444333
No 222
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.53 E-value=1.1e-14 Score=97.20 Aligned_cols=69 Identities=19% Similarity=0.077 Sum_probs=58.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
..+|++++|||||++|||-++.++.+.+.++ -++|+|+||||.+.+ ..+||+..++.|+ ...+.+.+++
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 3689999999999999999999999999888 489999999998765 5799999999887 4445544444
No 223
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.53 E-value=1.6e-14 Score=103.07 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=57.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|++|||||||++||+.++..+.+.|+++ ++.++|++||+++.+. .||+++.+..|+ ...+...
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 4689999999999999999999999999988 6889999999988775 699999999887 4444333
No 224
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.53 E-value=3.2e-14 Score=91.39 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=53.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++++|||||++||+.++..+.+.|+++ + +.|+|++||+.+... .||+++.+.+|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~ 206 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCe
Confidence 4789999999999999999999999999987 3 789999999988764 699999998875
No 225
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.53 E-value=2e-14 Score=94.93 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=56.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+..+..+.+.|+++ .+.++|++||+.+.+ ..||+++.+..|+ ...+...
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 168 MQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 4689999999999999999999999999988 378999999999864 5799999999886 4444443
No 226
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.8e-14 Score=96.13 Aligned_cols=68 Identities=24% Similarity=0.119 Sum_probs=58.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.|+|++||+.+.+ ..||+++.+..|+ ...+...++
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4689999999999999999999999999998 668999999998875 4799999999887 444444433
No 227
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.53 E-value=2.1e-14 Score=102.39 Aligned_cols=66 Identities=20% Similarity=0.109 Sum_probs=57.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+..+.++.+.|+++ ++.++|++||+.+.+ ..||+++.+.+|+ ...+...
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTA 225 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChH
Confidence 4689999999999999999999999999988 688999999998876 4699999999887 4444443
No 228
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.53 E-value=2.8e-14 Score=101.33 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=54.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++.++.+.|+++ ++.++|++||+.+.+. .||+++.+.+|+
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~ 218 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCe
Confidence 4689999999999999999999999999988 6889999999988765 699999999886
No 229
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=6.9e-15 Score=96.03 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=67.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecCCcCCC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHKASLNS 79 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~~~l~~ 79 (80)
.++++|+||||||+||..++...++..+++ .+..+++|-||.+... +||+++.+.+|+ +..+.+..+++++.|+.
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~ 236 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLER 236 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHH
Confidence 345699999999999999999999999999 7899999999999865 799999999999 88899999999887754
No 230
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.53 E-value=1.6e-14 Score=98.45 Aligned_cols=67 Identities=19% Similarity=0.010 Sum_probs=56.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+..+..+.+.|+++ .+.|+|++||+.+.+ ..||+++.+.+|+ ...+...+
T Consensus 116 ~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~ 187 (325)
T TIGR01187 116 VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEE 187 (325)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4689999999999999999999999999987 379999999998765 4699999999887 44444433
No 231
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.1e-14 Score=102.19 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=53.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.++..+.+.|+++ .+.++|++||+.+.+. .||+++.+.+|+
T Consensus 425 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 425 CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486 (510)
T ss_pred hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 4689999999999999999999999999987 6889999999988764 699999999886
No 232
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=2.1e-14 Score=100.41 Aligned_cols=68 Identities=15% Similarity=-0.017 Sum_probs=57.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+.+.|+++ .++|+|++||+.+.+ ..||+++.+..|+ ...+...++
T Consensus 180 ~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 180 AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 4689999999999999999999999999987 378999999998876 4699999999887 444444433
No 233
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.53 E-value=2e-14 Score=100.04 Aligned_cols=69 Identities=17% Similarity=-0.013 Sum_probs=59.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+..+.++.+.|.++ .+.|+|++||+.+.+ ..||+++.+..|+ +..++..+++
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 4789999999999999999999999999988 389999999998875 5799999999987 5555555443
No 234
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.53 E-value=1.9e-14 Score=99.22 Aligned_cols=68 Identities=19% Similarity=0.065 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++++|||||++||+..+.++.+.|+++ + +.|+|++||+.+.+ ..||+++.+.+|+ ...+...++
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 4789999999999999999999999999988 3 78999999998865 5799999999987 444554443
No 235
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.53 E-value=1.6e-14 Score=102.72 Aligned_cols=67 Identities=21% Similarity=0.159 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+.+|+ ...+....
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 4689999999999999999999999999998 6889999999988764 699999999887 44444443
No 236
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.6e-14 Score=99.90 Aligned_cols=67 Identities=15% Similarity=-0.041 Sum_probs=56.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+..+.++.+.|+++ + +.|+|++||+.+.+ ..||+++.+.+|+ ...+...+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4789999999999999999999999999987 3 78999999998765 5799999999887 44444333
No 237
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=2e-14 Score=99.17 Aligned_cols=68 Identities=15% Similarity=-0.044 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+..+.++.+.|+++ .+.|+|++||+.+.+ ..||+++.+.+|+ ...+...++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 5799999999999999999999999999987 379999999998754 5799999999887 444554443
No 238
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.1e-14 Score=104.65 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=58.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++|||||||++||+..+.++.++++++ + +.++|+|||+.+.+ ..||+++.++.|+ +..+....+
T Consensus 184 ~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 184 SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 4789999999999999999999999999998 3 79999999998876 4699999999987 555554443
No 239
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.2e-14 Score=94.87 Aligned_cols=67 Identities=21% Similarity=0.128 Sum_probs=58.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.. ..||+++.+..|+ ...+....
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 5789999999999999999999999999988 778999999999876 4799999999887 45444443
No 240
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3e-14 Score=101.05 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=56.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~ 67 (80)
+.+|+++||||||++||+.++.++.+.|+++ .+.++|++||+.+.+. .||+++.+.+|+ ...+.
T Consensus 150 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 150 SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 4689999999999999999999999999988 6889999999988764 699999999887 44443
No 241
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.52 E-value=1.9e-14 Score=102.60 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=53.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++.++.+.|+++ .+.++|+|||+.+.+. .||+++.+.+|+
T Consensus 184 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~ 246 (520)
T TIGR03269 184 AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGE 246 (520)
T ss_pred hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 4789999999999999999999999999987 3789999999998875 699999999886
No 242
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=2.8e-14 Score=92.81 Aligned_cols=65 Identities=18% Similarity=0.003 Sum_probs=56.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhhH-hcCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++..+.+.++++ + +.|+|++||+...+ ..||+++.+..|+ ...++.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~ 215 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTP 215 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 5789999999999999999999999999988 3 79999999998875 5699999999887 444443
No 243
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.51 E-value=9.6e-14 Score=89.84 Aligned_cols=57 Identities=37% Similarity=0.565 Sum_probs=53.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
++|+++++||||++||+.....+.+.++++ ++.++|++||+++....||+++.+++.
T Consensus 148 ~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~~ 205 (212)
T cd03274 148 KPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYKT 205 (212)
T ss_pred CCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEec
Confidence 468999999999999999999999999999 788999999998888899999999987
No 244
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=5.7e-14 Score=92.78 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=51.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~ 60 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+. .||+++.+.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 4689999999999999999999999999987 3789999999988764 6999999984
No 245
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.51 E-value=2.3e-14 Score=102.22 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=53.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.++..+.+.|+++ + +.++|++||+.+.+. .||+++.+..|+
T Consensus 443 ~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGK 505 (520)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4689999999999999999999999999887 3 789999999988765 699999998886
No 246
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.4e-14 Score=93.77 Aligned_cols=57 Identities=25% Similarity=0.198 Sum_probs=52.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~ 60 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+++... .||+++.+..
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 4789999999999999999999999999998 7789999999988764 6999999973
No 247
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.6e-14 Score=92.96 Aligned_cols=68 Identities=19% Similarity=0.052 Sum_probs=57.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++++|||||++||+.++..+.+.|+++ ++.++|++||+..... .+|+++.+++|+ ...+..+.+
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 4689999999999999999999999999998 7889999999987665 699999998887 444444443
No 248
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.51 E-value=7.7e-14 Score=89.05 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=50.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ-YIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~-~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.....+.+ +++.. ++.++|++||++.....||+++.+..|
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 57899999999999999999999988 46655 578999999998887679999998776
No 249
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.51 E-value=2.4e-14 Score=99.05 Aligned_cols=68 Identities=16% Similarity=-0.018 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C--CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P--KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~--~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++++|||||++||+..+.++.+.|+++ + +.|+|++||+.+.+ ..||+++.+..|+ ...++..++
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 4789999999999999999999999999987 3 78999999998765 5799999999887 444444433
No 250
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.51 E-value=4.3e-14 Score=91.26 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=50.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGIT 59 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~ 59 (80)
+.+|++++|||||++||+..+..+.+.++++ ++.++|++||+.+... .||+++.+.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 4689999999999999999999999999988 5889999999988774 799998764
No 251
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.51 E-value=3.3e-14 Score=92.75 Aligned_cols=66 Identities=17% Similarity=0.044 Sum_probs=56.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|++++|||||++||+.++..+.+.|++. + +.++|++||++..+ ..||+++.+..|+ ...++..
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 216 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPD 216 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHH
Confidence 4689999999999999999999999999987 3 79999999998875 5699999999887 4444433
No 252
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.51 E-value=2.5e-14 Score=102.69 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=61.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
..+|+++++|||+|+||+..+..++++|+++ -+.+.++||||+.... .|||+..++.|+ ++.|....++.
T Consensus 445 a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 445 ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 4689999999999999999999999999998 4899999999999987 499999999999 66665555443
No 253
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.51 E-value=6.6e-14 Score=90.74 Aligned_cols=57 Identities=26% Similarity=0.263 Sum_probs=51.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+....||+++.+.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~ 212 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQP 212 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEec
Confidence 4789999999999999999999999999987 37899999999888778999999964
No 254
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.51 E-value=3.5e-14 Score=100.82 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=53.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.++..+.+.++++ .+.++|++||+.+.+. .||+++.+.+|+
T Consensus 419 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 480 (500)
T TIGR02633 419 LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480 (500)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 4689999999999999999999999999988 6889999999988765 699999998876
No 255
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.50 E-value=7.3e-14 Score=92.07 Aligned_cols=58 Identities=22% Similarity=0.116 Sum_probs=52.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+...+. .||+++.++.+
T Consensus 131 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 131 SKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence 5789999999999999999999999999987 3799999999988776 69999998664
No 256
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.50 E-value=7.5e-14 Score=89.87 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=50.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH--HHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ--YIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~--~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.+...+++ +++.+ .+.++|++||+.+....||+++.++.|
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 47899999999999999999999988 56655 578999999998887789999988765
No 257
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.50 E-value=1.3e-13 Score=84.42 Aligned_cols=57 Identities=23% Similarity=0.152 Sum_probs=50.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++++||||+++||+.++..+.+.++++ +.+++++||+.+... .||+++.+..|
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 5799999999999999999999999999876 469999999988764 69999998776
No 258
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.50 E-value=3.6e-14 Score=104.55 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=56.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+++|+++|||||||+||++++..+.+ ....+++|+|+|||+.+....||+++.+++|+ .+.|+..++
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE-SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH-hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHH
Confidence 57999999999999999999999988 22227889999999999988999999999987 555554443
No 259
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=5.2e-14 Score=93.01 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=52.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~ 61 (80)
+.+|++|+|||||++||..++..+.+.+.++ .+.|+++|||+.+.+ ..+||++.+..+
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 4689999999999999999999999988887 579999999997765 569999999886
No 260
>KOG0055|consensus
Probab=99.50 E-value=3.1e-14 Score=108.89 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=63.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|++||||||||+||++.++.+.+.|... +|.|.|+|+|+....+.||+++.+++|+ ++.|.-++++.
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 5899999999999999999999999999999 8999999999999999999999999998 66666555443
No 261
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.9e-14 Score=94.95 Aligned_cols=67 Identities=21% Similarity=0.086 Sum_probs=55.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEE-EEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILF-GITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~-~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++ .+..|+ ...+...+
T Consensus 196 ~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 196 APDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 4789999999999999999999999999998 6689999999988865 699975 457776 44444433
No 262
>PLN03232 ABC transporter C family member; Provisional
Probab=99.50 E-value=4e-14 Score=110.71 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=63.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|+++|||||||+||.++.+.+.+.+++. +++|+|+|+|+.+....||+++.+.+|+ .+.|+..+++.
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4799999999999999999999999999998 8999999999999999999999999998 66666655543
No 263
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.50 E-value=1.4e-13 Score=87.19 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=52.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.++..+.+.++++ + +.++|++||+.+... .||+++.+..+
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~ 148 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGE 148 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCC
Confidence 4689999999999999999999999999987 4 489999999988776 69999999776
No 264
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.49 E-value=3.9e-14 Score=97.62 Aligned_cols=69 Identities=20% Similarity=0.038 Sum_probs=58.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++++||||+++||+..+.++.+.|+++ .+.|+|++||+.+.+ ..||+++.+++|+ ...++..++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4689999999999999999999999999987 389999999998865 5799999999988 5555554443
No 265
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.49 E-value=3.8e-14 Score=90.97 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeecc-CCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKML-GSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~~-~~~~~~~~~ 72 (80)
+++-|+++||||||+|||.-+.++..++.++ ++.|+++|||+++-+ ..+++++.+.+|++ ..+...+.+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 4678999999999999999999999999988 789999999998765 46999999999984 444444433
No 266
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.49 E-value=5.5e-14 Score=99.70 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=54.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+++.++++ .+.++|++||+.+.+. .||+++.+..|+
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~ 468 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCE
Confidence 4789999999999999999999999999887 6899999999988764 799999998886
No 267
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.49 E-value=9.9e-14 Score=92.50 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=51.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+|+++||||||++||+.....+.+.++++ .+.++|++||+++....||+++.+.++
T Consensus 190 ~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~ 247 (261)
T cd03271 190 GKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPE 247 (261)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCC
Confidence 48999999999999999999999999988 688999999999988889999999654
No 268
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.49 E-value=2.8e-14 Score=94.21 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=54.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+ ..||+++.+.. + ...+...
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~ 205 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPE 205 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHH
Confidence 4789999999999999999999999999987 3 78999999999876 56999999864 4 3334433
No 269
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.49 E-value=4.8e-14 Score=93.80 Aligned_cols=64 Identities=14% Similarity=-0.057 Sum_probs=55.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~ 67 (80)
+.+|+++||||||++||+.....+.+.+.++ .+.++|++||+...+. .||+++.+..|+ ...++
T Consensus 159 ~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~ 226 (264)
T PRK13546 159 TVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE 226 (264)
T ss_pred hhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCC
Confidence 4689999999999999999999999999887 5889999999988764 699999998886 43333
No 270
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=4.7e-14 Score=97.21 Aligned_cols=67 Identities=16% Similarity=0.036 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++||||+++||+..+.++.+.|+++ .+.|+|++||+.+.+ ..||+++.++.|+ ...+...+
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4789999999999999999999999999988 379999999998765 5799999999987 44444443
No 271
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.6e-13 Score=84.53 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=51.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhc-CceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFH-SDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~-~d~~~~i~~~ 61 (80)
+.+|++++|||||++||..++..+.+.++++ .+.+++++||+.+.... ||+++.+.++
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCc
Confidence 4679999999999999999999999999987 45899999999988765 7999988765
No 272
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.48 E-value=9.3e-14 Score=98.81 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=53.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++.++.+.|+++ .+.++|++||+.+.+. .||+++.+.+|+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~ 217 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGR 217 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4689999999999999999999999999988 6789999999988764 699999999886
No 273
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=8e-14 Score=99.71 Aligned_cols=70 Identities=19% Similarity=0.088 Sum_probs=58.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec-c-CCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM-L-GSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~-~~~~~~~~~~~ 74 (80)
+.+|+++||||||++||+.++..+.+.|+++. .++|++||+.+.+. .||+++.+.+|+ + ..+...+++..
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKYE-GTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 47899999999999999999999999998874 49999999998765 699999999886 3 44555544443
No 274
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.48 E-value=1.2e-13 Score=99.20 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=53.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+++|+++||||||++||++++..+.+.+.+. .+.|+|+|||+++....||+++.+++|+
T Consensus 465 ~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 526 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999888754 4789999999999888999999999886
No 275
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.48 E-value=1.3e-13 Score=88.83 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=50.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGIT 59 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~ 59 (80)
+.+|++++|||||++||+..+..+.+.++++ ++.++|++||+.+.+ ..|++++.+.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 5799999999999999999999999999887 678999999998876 4799998775
No 276
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.48 E-value=7e-14 Score=97.09 Aligned_cols=66 Identities=18% Similarity=0.046 Sum_probs=56.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++|||||+++||+..+.++.+.|+++ .+.++|++||+...+ ..||+++.+..|+ ...+...
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~ 230 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 4689999999999999999999999999988 389999999998764 5799999999987 4444433
No 277
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=4.1e-14 Score=91.77 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=65.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeCh-hhHhcCceEEEEeeec-cCCcceeeeecCCcC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKP-QFYFHSDILFGITLKM-LGSLTIKGRVHKASL 77 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~-~~~~~~d~~~~i~~~~-~~~~~~~~~~~~~~l 77 (80)
+.+|++++|||||||+||-....+.+.++.+ +|..++++.|+. +.+..|||.|.+..|+ ..+|++.++++.+..
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 4689999999999999999999999999988 799999999985 4567899999999999 888999888876543
No 278
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.48 E-value=5.5e-14 Score=110.10 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=63.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|+++|||||||+||.++.+.+.+.|++. +++|+|+|+|+.+....+|+++.+.+|+ ++.|+..+++.
T Consensus 1437 Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5799999999999999999999999999988 8999999999999999999999999998 66666665543
No 279
>PLN03130 ABC transporter C family member; Provisional
Probab=99.48 E-value=6.7e-14 Score=110.11 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=63.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|+++|||||||+||.++.+.+.+.|++. +++|+|+|+|+.+....||+++.+.+|+ .+.|+..+++.
T Consensus 1390 Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1390 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 5799999999999999999999999999998 8999999999999999999999999998 66666665553
No 280
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.48 E-value=9.6e-14 Score=99.00 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=51.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEE
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGI 58 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i 58 (80)
+++|++++|||||++||+++++++.+.+.++ +++|+|+|||+++....||+++.+
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 5799999999999999999999999999998 899999999999988889999863
No 281
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.47 E-value=1.1e-13 Score=92.99 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=55.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHH-HcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYI-RTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l-~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+..+..+.+.+ +.+ ++.++|++||+......||+++.+..|+ ...+...+
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 4689999999999999999999998754 555 6789999999988877899999998887 44444443
No 282
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=9.2e-14 Score=93.91 Aligned_cols=67 Identities=22% Similarity=0.095 Sum_probs=56.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEE-EEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILF-GITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~-~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++ .+..|+ ...+....
T Consensus 216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~ 286 (305)
T PRK14264 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDK 286 (305)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHH
Confidence 4789999999999999999999999999998 6789999999998864 699964 567776 44444443
No 283
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.47 E-value=2.2e-13 Score=87.66 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=53.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHH-HHHHHHHcC-C--CceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIW-KTIQYIRTV-P--KMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~-~i~~~l~~~-~--~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++++|||+++||+.... .+.+.++++ + +.++|++||+++....||+++.+.+.
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 3689999999999999999999 999999988 4 78999999999888889999999876
No 284
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.47 E-value=4.7e-13 Score=87.22 Aligned_cols=57 Identities=30% Similarity=0.575 Sum_probs=52.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+|+++++||||++||+..+..+.+.++++ ++.++|++||+.+....||+++.+.-.
T Consensus 179 ~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~~~ 236 (243)
T cd03272 179 DPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVKFR 236 (243)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEEEE
Confidence 568999999999999999999999999998 788899999998888889999998776
No 285
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.47 E-value=4e-13 Score=85.00 Aligned_cols=58 Identities=38% Similarity=0.622 Sum_probs=53.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++++|||+++||+.....+.+.+.++ .+.++|++||+++....+|+++.+++.
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~~ 173 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFV 173 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEEe
Confidence 4789999999999999999999999999988 458999999999888889999999985
No 286
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.46 E-value=8.9e-14 Score=108.79 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=62.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+++|+++|||||||+||.++...+.+.|++. +++|+|+|+|+.+....+|+++.+.+|+ .+.|...+++
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5799999999999999999999999999998 8999999999999998999999999998 5666665554
No 287
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=9.2e-14 Score=96.53 Aligned_cols=67 Identities=15% Similarity=-0.003 Sum_probs=56.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++||||+++||...+.++.+.++++ .+.|+|++||+.+.+ ..||+++.+..|+ ...+...+
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 4689999999999999999999999888877 479999999998864 5799999999887 44444433
No 288
>KOG0057|consensus
Probab=99.46 E-value=1e-13 Score=99.51 Aligned_cols=69 Identities=23% Similarity=0.204 Sum_probs=61.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+|+||++++|||||+||.+++.++++.+... .++|+|+|-|+...+..+|+++.+++|+ ...|+-++.+
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell 573 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELL 573 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHh
Confidence 6899999999999999999999999999987 9999999999999999999999999997 4555544433
No 289
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=1.1e-13 Score=90.29 Aligned_cols=64 Identities=19% Similarity=0.070 Sum_probs=55.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~ 67 (80)
+.+|++++|||||++||+.++..+.+.++++ + +.++|++||++.... .||+++.+..|+ ...+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 213 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 4689999999999999999999999999987 3 899999999988754 699999998886 44443
No 290
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.46 E-value=1e-13 Score=99.79 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=56.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+..+..+++.|+++ .+.++|++||+.+.+. .||+++.+..|+ ...+...
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~ 228 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIK 228 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 4689999999999999999999999999987 5889999999988764 699999998886 4444433
No 291
>PLN03211 ABC transporter G-25; Provisional
Probab=99.46 E-value=7.4e-14 Score=102.52 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChh--hHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQ--FYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~--~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||+|||+.++.++.+.|+++ ++.|+|++||+++ ....+|+++.+.+|+ +..|..++
T Consensus 222 ~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~ 293 (659)
T PLN03211 222 LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293 (659)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHH
Confidence 4689999999999999999999999999988 6899999999986 356799999999887 55554443
No 292
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.46 E-value=2.4e-13 Score=99.50 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=61.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++++|||||++||+.+++.+.++++++ ++.+++++||+.+....||+++.++.|+ ...++.++..
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 4689999999999999999999999999988 5899999999998887899999999988 6666666554
No 293
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.45 E-value=2.3e-13 Score=97.89 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=52.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHH-HcC--CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYI-RTV--PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l-~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+++|+++||||||++||+++++.+.+.+ +.. ++.|+|+|||+++....||+++.+.+|+
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999998755 333 6899999999999888999999998875
No 294
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.45 E-value=2.6e-13 Score=87.31 Aligned_cols=60 Identities=38% Similarity=0.682 Sum_probs=50.6
Q ss_pred CccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 2 YRYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 2 ~~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+.++|+++||||+++||..++.++.++|++. ++.|+|++||+..++..||+.+++.+.
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~~~ 214 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVTMV 214 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356789999999999999999999999999998 889999999999999999999999885
No 295
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.45 E-value=2.2e-13 Score=89.92 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=64.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
+.+|++|+||||.||+.++...++.+.++++ .+.++++|-|++... ..|||++.+..|+ +.+|.+.++.+.
T Consensus 165 a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 165 ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence 5789999999999999999999999999999 359999999999986 4799999999999 899988887755
No 296
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.3e-13 Score=97.14 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=56.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh-HhcCceEEEEeeec-cCCcc
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF-YFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~-~~~~d~~~~i~~~~-~~~~~ 67 (80)
.+++++|||||||+|+......+++.++++ +|.++|+|||+++. +..||++..+.+|+ +....
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 588999999999999999999999999999 89999999999765 56799999999997 44333
No 297
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.44 E-value=3.3e-13 Score=89.46 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=52.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.++..+.+.++++ .+.++|++||+.+... .||+++.++.+
T Consensus 155 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~ 215 (255)
T cd03236 155 ARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGE 215 (255)
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCC
Confidence 4689999999999999999999999999988 5789999999998876 69999999653
No 298
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.44 E-value=1.2e-13 Score=96.94 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
-+|.+++||||||+||..-+.++.++|+.+ .+.+.+|||||....+ .|++++++..|+ ++.|..+.+++.
T Consensus 443 LkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~ 517 (534)
T COG4172 443 LKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517 (534)
T ss_pred cCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcC
Confidence 479999999999999999999999999998 5899999999999876 699999999999 788888777754
No 299
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.44 E-value=3.3e-13 Score=86.53 Aligned_cols=56 Identities=25% Similarity=0.152 Sum_probs=50.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
+.+|+++||||||++||+.++.++.+.|+++ ++.++|++||+...+.. |+++.+..
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 4689999999999999999999999999987 68999999999887766 88887743
No 300
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.43 E-value=1.6e-13 Score=96.46 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=61.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
.++|++||.||||.+||..-+.+++++|+++ .++.+++||||..... +||+++.+.+|. ++.+....++
T Consensus 173 an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 4789999999999999999999999999999 5999999999999986 599999999998 6666555544
No 301
>PTZ00243 ABC transporter; Provisional
Probab=99.43 E-value=2.4e-13 Score=106.74 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=62.0
Q ss_pred cC-CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YK-PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~-~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
++ +|++||||||||+||+++.+.+.+.|++. +++|+|+|+|+.+.+..||+++.+.+|+ .+.|+..+++.
T Consensus 1461 L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1461 LKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 35 48999999999999999999999999988 8999999999999999999999999998 66666665543
No 302
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=9.4e-13 Score=87.89 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=53.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
++|+++++|||+++||+.....+.+.+++. ++.++|++||++.....||+++.+..+
T Consensus 191 ~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 191 DAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 499999999999999999999999999998 788999999999887889999999887
No 303
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.42 E-value=3.4e-13 Score=87.05 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=52.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++|||||++++|+.++..+.+.+.+. ++.++|++||++.... .||+++.+.+|+
T Consensus 120 ~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~ 180 (213)
T PRK15177 120 LLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGK 180 (213)
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCe
Confidence 5789999999999999999999999988655 5668999999998775 799999999886
No 304
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.42 E-value=5.2e-13 Score=101.04 Aligned_cols=69 Identities=32% Similarity=0.473 Sum_probs=61.1
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeeecC
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRVHK 74 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~ 74 (80)
.+.+||+++||||+++||+.+...+.++|.++ .+.++|+|||+...+..||++++++.. ..|+|.+++-
T Consensus 1093 ~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~~---~~g~S~~~~~ 1162 (1164)
T TIGR02169 1093 RYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTMR---RNGESQVFGL 1162 (1164)
T ss_pred hcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEEe---cCCeeEEEec
Confidence 46789999999999999999999999999998 778999999999888899999999986 3467777653
No 305
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.42 E-value=5.8e-13 Score=85.07 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=48.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEE
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGI 58 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i 58 (80)
+.+|+++||||||++||+..+.++.+.|+++ ++.++|++||+.... ..+++++..
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 5789999999999999999999999999887 588999999986654 568888755
No 306
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.42 E-value=3.8e-13 Score=95.37 Aligned_cols=59 Identities=19% Similarity=0.094 Sum_probs=52.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CC-ceEEEEEeChhhHh--cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PK-MNVIAVSLKPQFYF--HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~-~~ii~ish~~~~~~--~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++ .++|++||+.+.+. .||+++.+.+|+
T Consensus 417 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~ 480 (490)
T PRK10938 417 VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGD 480 (490)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCc
Confidence 4789999999999999999999999999998 44 57999999988774 489999998875
No 307
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=3.9e-13 Score=86.52 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhc-CceEEEEeeeccC-Ccceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFH-SDILFGITLKMLG-SLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~-~d~~~~i~~~~~~-~~~~~~~~ 72 (80)
+.+|.++++|||||+|||+-..++++.++++ .|.|.+++||.+.+++. +.+++.+.+|.++ .|.+.+++
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 3589999999999999999999999999999 79999999999998874 8999999998754 44554444
No 308
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=7.5e-13 Score=84.74 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=49.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEe-Chh-hHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSL-KPQ-FYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish-~~~-~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.+++.+.+.++++ + +.++|+++| +.+ ....||+++.+..|+
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~ 197 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCE
Confidence 5789999999999999999999999999987 3 566666655 444 456799999999875
No 309
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.41 E-value=1.2e-12 Score=94.61 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=53.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+|+++|||||+++||+.....+.+.|+++ ++.|+|+|||++.....||+++.+.++
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 57999999999999999999999999999 889999999999988899999999887
No 310
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.41 E-value=1.2e-12 Score=84.47 Aligned_cols=57 Identities=16% Similarity=-0.010 Sum_probs=50.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
.+|++++|||||++||+.....+.+.++++ ++.++|++||+++... .+++++.++.|
T Consensus 150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~ 209 (213)
T cd03279 150 ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTP 209 (213)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecC
Confidence 368999999999999999999999999988 4889999999988765 58888887766
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=8.4e-13 Score=94.50 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=52.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++.++.+.|++ .+.++|++||+.+.+. .||+++.+..|+
T Consensus 171 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~~~tiiivsHd~~~~~~~~d~i~~l~~g~ 229 (530)
T PRK15064 171 FSNPDILLLDEPTNNLDINTIRWLEDVLNE-RNSTMIIISHDRHFLNSVCTHMADLDYGE 229 (530)
T ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCCeEEEEeCCHHHHHhhcceEEEEeCCE
Confidence 468999999999999999999999999875 4689999999988765 699999999886
No 312
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=8.9e-13 Score=84.30 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=47.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhc-CceEEEE
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFH-SDILFGI 58 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~-~d~~~~i 58 (80)
+.+|++++|||||++||+.++..+.+.|+++ ++.++|++||+...+.. .++++.+
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 5799999999999999999999999999987 57899999999888754 4555544
No 313
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.40 E-value=5.3e-13 Score=96.15 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=53.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|+|||||++||.++..++-++|+.+++ ++|+||||-.++. .|++++.+..++
T Consensus 169 ~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCc
Confidence 579999999999999999999999999998866 9999999999986 599999998875
No 314
>PRK13409 putative ATPase RIL; Provisional
Probab=99.40 E-value=8.1e-13 Score=96.11 Aligned_cols=57 Identities=23% Similarity=0.167 Sum_probs=51.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~ 60 (80)
+++|++|||||||++||+.++..+.+.|+++ .+.++|++||+..++. .||+++.+..
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 5789999999999999999999999999988 3789999999988765 6999999865
No 315
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.40 E-value=5.5e-13 Score=100.60 Aligned_cols=68 Identities=26% Similarity=0.483 Sum_probs=59.5
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeeec
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRVH 73 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~~ 73 (80)
.+.+||++||||||++||+.+...+.++|..+ ++.++|+|||++.++..||++++++.. ..+.|.+++
T Consensus 1108 ~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~~~---~~~~~~~~~ 1176 (1179)
T TIGR02168 1108 KVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVTMQ---EKGVSKIVS 1176 (1179)
T ss_pred ccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeeeec---cCCceeEee
Confidence 35788999999999999999999999999998 778999999999988889999999886 235776664
No 316
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=9.7e-13 Score=96.26 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=52.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|||+..++. .||+++.+..|+
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~g-tvi~vSHd~~~~~~~~d~i~~l~~G~ 504 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG-ALVVVSHDRHLLRSTTDDLYLVHDGK 504 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 478999999999999999999999999998744 9999999998875 699999998876
No 317
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=3.7e-13 Score=89.87 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=61.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhc-CceEEEEeeec-cCCcceeeeec
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFH-SDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~-~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
-+|+++++|||+|+||...+.++.++++++ .+.+.++||||...+.+ ||++..++.|+ ++.+...+++.
T Consensus 126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 589999999999999999999999999998 58999999999999875 99999999998 66666666554
No 318
>KOG0058|consensus
Probab=99.40 E-value=3.4e-13 Score=98.96 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeeccCCc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKMLGSL 66 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~ 66 (80)
+++|.+|||||.||+||.+.+..+.+.|.+. +++|+|+|.|+.+..+.||+|+.+.+|++.+.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 5899999999999999999999999999988 88999999999999999999999999984333
No 319
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.40 E-value=6.8e-13 Score=103.86 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=53.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
+++|++||||||||+||+++++.+.+.|.+. +++|+|+|||+......||+++.+.+
T Consensus 1374 lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeC
Confidence 5799999999999999999999999999886 48999999999999999999999998
No 320
>KOG0055|consensus
Probab=99.40 E-value=3.5e-13 Score=103.22 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
++||++|||||.||+||.+..+.+.+.|.+. .+.|.|+|.|++.....||.+..+++|+ .+.|+=++++.
T Consensus 1142 lRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 5899999999999999999999999999999 8999999999999999999999999998 66666555444
No 321
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=3.6e-13 Score=92.12 Aligned_cols=71 Identities=14% Similarity=0.010 Sum_probs=60.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhh-HhcCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQF-YFHSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~-~~~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
..+|++|+||||||+|||--+.++.+.|.++ -++|++|||||.+. ++..||+..++.|+ +..|++.+++..
T Consensus 180 a~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 180 ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred ccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcC
Confidence 4689999999999999999999999888777 47899999999766 46799999999988 666777666643
No 322
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.39 E-value=6.1e-13 Score=84.82 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=47.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceE
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDIL 55 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~ 55 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+......||..
T Consensus 143 ~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 143 MSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchh
Confidence 4789999999999999999999999999987 678999999999888778764
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.39 E-value=1.1e-12 Score=94.43 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=52.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.....+.+.|+++. .++|++||+.+.+. .||+++.+.+|+
T Consensus 179 ~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 179 LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-GTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-CeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 47899999999999999999999999999874 39999999998775 699999999876
No 324
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.39 E-value=5.4e-13 Score=84.34 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=41.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+++.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 5789999999999999999999999999988 58899999999764
No 325
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=1.1e-12 Score=83.34 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=61.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
+..|.++++||||++|||+-..++.+.++++ .|.|-+++||..+... .|.+++.+.+|. ++.|+.+....|
T Consensus 157 mmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p 231 (242)
T COG4161 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEP 231 (242)
T ss_pred hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCc
Confidence 4689999999999999999999999999999 6899999999999876 499999999988 666666554433
No 326
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.38 E-value=4.5e-13 Score=97.59 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChh--hHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQ--FYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~--~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||+|||+.++..+++.++++ ++.|+|+++|++. ....+|+++.+.+|+ +..|..++
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~ 253 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH
Confidence 5789999999999999999999999999998 6899999999974 467899999999887 55555443
No 327
>PRK10869 recombination and repair protein; Provisional
Probab=99.38 E-value=2.9e-12 Score=92.73 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=54.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
..+|+++|||||++|||..+...+.+.++++ ++.|+|+|||++.....||+++.+.++
T Consensus 450 ~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 450 KMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3478999999999999999999999999999 889999999999988899999999886
No 328
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.38 E-value=7.5e-13 Score=106.03 Aligned_cols=65 Identities=18% Similarity=0.023 Sum_probs=56.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|++++|||||+|||+..++.+.+.++++ ++.++|++||+++.+. .||+++.+.+|+ ...|+.
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTI 2154 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 4789999999999999999999999999987 6899999999988775 699999999886 444443
No 329
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.38 E-value=8.4e-13 Score=83.90 Aligned_cols=52 Identities=23% Similarity=0.072 Sum_probs=46.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceE
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDIL 55 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~ 55 (80)
+.+|++++|||||++||+..+..+.+.+++. ++.++|++||+......+|.+
T Consensus 139 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 139 ACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 5789999999999999999999999999865 689999999999888777765
No 330
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.38 E-value=1.9e-12 Score=83.40 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=54.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhc-CceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFH-SDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~-~d~~~~i~~~~ 62 (80)
+.+|++||.||||.+|||..+.++++++.++ .|+|+++.||+.+.+.. ..+++.+..|+
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Gr 214 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGR 214 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCE
Confidence 4689999999999999999999999999999 79999999999998874 66888888886
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.8e-12 Score=94.82 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=52.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.+..++.++|+++ +.++|+|||+..++. .||+++.+..|+
T Consensus 165 ~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 165 ICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred ccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 5789999999999999999999999999876 359999999998875 699999999876
No 332
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.37 E-value=7.1e-13 Score=94.15 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=54.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+++|++||||||||-|-|...++++..++.+ .|.+||+|||+.+.. ..||++-.+.+|+
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCe
Confidence 6899999999999999999999999999999 899999999997665 5799999999986
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=99.37 E-value=1.9e-12 Score=94.17 Aligned_cols=58 Identities=17% Similarity=0.120 Sum_probs=52.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+..+.++.+.++++ ++.++|++||+.+.+. .||+++.++.+
T Consensus 228 ~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 228 LRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4789999999999999999999999999998 7889999999988775 59999988753
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.37 E-value=2.3e-12 Score=92.77 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=51.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.++..+.+.|+++.+ ++|++||+.+.+. .||+++.+..+
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~viivsHd~~~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFAG-CAVVISHDRWFLDRIATHILAFEGD 516 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHhCCEEEEEECC
Confidence 478999999999999999999999999998743 7999999998765 69999999764
No 335
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.37 E-value=1.1e-12 Score=105.16 Aligned_cols=63 Identities=13% Similarity=-0.009 Sum_probs=56.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSL 66 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~ 66 (80)
+.+|+++||||||+|||+..++.+.+.|+++ ++.++|++||+++.+. .||+++.+.+|+ ...|
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~G 1142 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 4689999999999999999999999999999 8899999999998875 699999999887 4433
No 336
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.37 E-value=2e-12 Score=94.47 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=52.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.+..++.++|+++. .++|+|||+..++. .||+++.+.+|+
T Consensus 172 ~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~tvlivsHd~~~l~~~~d~i~~L~~G~ 230 (635)
T PRK11147 172 VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-GSIIFISHDRSFIRNMATRIVDLDRGK 230 (635)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 47899999999999999999999999999874 49999999988875 699999999886
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.36 E-value=2.2e-12 Score=92.87 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=52.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++. .++|+|||+.+.+. .||+++.+.+|+
T Consensus 177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~-~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP-GTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC-CeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 57899999999999999999999999998864 49999999998875 599999999886
No 338
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=4.1e-13 Score=87.15 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=68.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecCCcCC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHKASLN 78 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~~~l~ 78 (80)
+++.++++||||.++||-++..++++.|+.+ -++|+++|-||.+++. ++|+++-++.|+ +..|.+.+++.++.|+
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~ 230 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILS 230 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHH
Confidence 5789999999999999999999999999998 4899999999999876 699999999999 7888888888887765
Q ss_pred C
Q psy832 79 S 79 (80)
Q Consensus 79 ~ 79 (80)
+
T Consensus 231 e 231 (252)
T COG4604 231 E 231 (252)
T ss_pred H
Confidence 4
No 339
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.36 E-value=2.3e-12 Score=94.55 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=51.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+++|+++||||||++||+.++..+.+.+++ .+.|+|+|||+.+....||+++.+..+
T Consensus 598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~-~~~tvI~isH~~~~~~~~d~il~l~~~ 654 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVDVEGYMYRLCRE-FGITLFSVSHRKSLWKYHEYLLYMDGR 654 (659)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHH-cCCEEEEEeCchHHHHhCCEEEEEeCC
Confidence 579999999999999999999999998877 478999999999988899999998654
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.36 E-value=1.7e-12 Score=101.60 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=54.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+++|++|||||||++||+.++..+.+.|+++ + +.|+|+|||+.+....||+++.+..|
T Consensus 595 l~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 595 IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 5799999999999999999999999999988 3 79999999999988889999999885
No 341
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.36 E-value=3.5e-12 Score=79.30 Aligned_cols=57 Identities=30% Similarity=0.342 Sum_probs=52.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+|+++++|||++++|+.....+.+.+.++ ++.++|++||+.+....+|+++.+++.
T Consensus 98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~~ 156 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKKV 156 (162)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEEE
Confidence 489999999999999999999999998887 568999999999998889999999875
No 342
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.35 E-value=2.1e-12 Score=82.14 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=44.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEE
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILF 56 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~ 56 (80)
+.+|++++|||||++||+..+..+.+.++++ ++.++|++||+...+ .+++++
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 143 LSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence 5799999999999999999999999999987 678999999987533 345554
No 343
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=1.9e-12 Score=97.93 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEe
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
|.+|||||||++||+....++.+.|+++ .|.|+|+|+|+++.+..||+++.+.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~Lg 562 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIG 562 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEec
Confidence 4899999999999999999999999998 6889999999999888999999993
No 344
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.34 E-value=1.9e-12 Score=98.07 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=49.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEE
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGI 58 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i 58 (80)
|.+|||||||++||+....++.+.|+++ .|.|+|+|+|+++.+..||+++.+
T Consensus 510 ~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 510 GVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred CcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 4899999999999999999999999998 689999999999888789999999
No 345
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.33 E-value=5.1e-12 Score=91.08 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=50.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~ 60 (80)
+.+|+++||||||++||+.++..+.+.|+++.+ ++|++||+.+.+. .||+++.+..
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vtHd~~~~~~~~d~i~~l~~ 517 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEFPG-CAVVISHDRWFLDRIATHILAFEG 517 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECCHHHHHHhCCEEEEEEC
Confidence 478999999999999999999999999998744 7999999988765 6999999986
No 346
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.2e-12 Score=87.81 Aligned_cols=61 Identities=18% Similarity=0.099 Sum_probs=54.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeeccC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKMLG 64 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~~~ 64 (80)
.-.|++|+||||+++||..-++++-+.|++. -+.+.++||||.+.. ..||+++.+++|++.
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie 217 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee
Confidence 3579999999999999999999999999988 489999999997664 579999999999743
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=99.33 E-value=3e-12 Score=100.29 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=55.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh--HhcCceEEEEee-ec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF--YFHSDILFGITL-KM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~--~~~~d~~~~i~~-~~-~~~~~ 67 (80)
+.+|++++|||||+|||+.++..+++.|+++ .+.++|+++|+++. ...+|+++.+.+ |+ +..|.
T Consensus 1035 ~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1035 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 4789999999999999999999999999998 68999999999863 568999999987 55 33343
No 348
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.33 E-value=1.7e-12 Score=99.89 Aligned_cols=71 Identities=28% Similarity=0.529 Sum_probs=65.0
Q ss_pred CCccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeeecC
Q psy832 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRVHK 74 (80)
Q Consensus 1 ~~~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~ 74 (80)
|++++++||++|||..++||..+..++.++|++. .+.|+|+|||+..++..||++++|+.. ..++|.+++.
T Consensus 1083 i~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~l~GVtm~---~~GvS~vvsv 1154 (1163)
T COG1196 1083 IQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADRLVGVTMQ---EKGVSKVVSV 1154 (1163)
T ss_pred HHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHHHeeeEee---cCCceEEEEe
Confidence 4689999999999999999999999999999999 999999999999999999999999998 2277777764
No 349
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=3.2e-12 Score=81.63 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=54.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
..|++++.||||.+||..+..++.+++-.+ .++|.++||||+.....|+|.+.+..|+
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~ 223 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecce
Confidence 479999999999999999999999998887 6999999999999999999999998885
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.32 E-value=5.5e-12 Score=92.17 Aligned_cols=58 Identities=24% Similarity=0.171 Sum_probs=51.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEe-eec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGIT-LKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~-~~~ 62 (80)
+.+|++|||||||++||+.+...+.+.++++. .++|+|||+...+. .||+++.+. .|+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-~tvi~vSHd~~~~~~~~d~i~~l~~~g~ 515 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSYQ-GTVLLVSHDRQFVDNTVTECWIFEGNGK 515 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-CeEEEEECCHHHHHHhcCEEEEEeCCCe
Confidence 46899999999999999999999999998863 39999999988775 699999997 554
No 351
>PRK03918 chromosome segregation protein; Provisional
Probab=99.32 E-value=7.5e-12 Score=93.49 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=53.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+.....+.+.|..+ .+.++|+|||++.+...||+++.+.++
T Consensus 810 ~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~~ 869 (880)
T PRK03918 810 AGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSLE 869 (880)
T ss_pred cCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEec
Confidence 3689999999999999999999999999886 568999999999888889999999887
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.32 E-value=6.6e-12 Score=93.11 Aligned_cols=58 Identities=26% Similarity=0.223 Sum_probs=51.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.+...+.+.+.+.++ ++|++||+...+. .||+++.+.+|+
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~g-tvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLFQG-GVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-EEEEEECCHHHHHHhCCEEEEEECCE
Confidence 468999999999999999999999988887644 9999999998875 699999998875
No 353
>PLN03232 ABC transporter C family member; Provisional
Probab=99.31 E-value=2.7e-12 Score=100.64 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=55.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHH-HHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQY-IRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~-l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
+++|+++|||||||+||+.+.+++++. +... +++|+|+|||+.+....||+++.+.+|+ ...|+
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT 822 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecC
Confidence 579999999999999999999988764 5656 8899999999999988999999999887 44443
No 354
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=3.3e-12 Score=86.02 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhh-HhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQF-YFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~-~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|++++|||||-+||...+..+.++++++ .++||+.+||+.+- ...|+|++.+..|+ +..|+.+
T Consensus 172 Lh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~ 242 (325)
T COG4586 172 LHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA 242 (325)
T ss_pred cCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHH
Confidence 5799999999999999999999999999998 68999999999654 56799999999998 6654443
No 355
>KOG0996|consensus
Probab=99.31 E-value=1e-12 Score=99.88 Aligned_cols=72 Identities=31% Similarity=0.476 Sum_probs=66.3
Q ss_pred CCccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeeecC
Q psy832 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRVHK 74 (80)
Q Consensus 1 ~~~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~ 74 (80)
||.|+++|+++|||.+||||..+...|..++++. +++|+|+||.+.+++..++++++||+. .+++.+-.+.|
T Consensus 1212 LH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMFELa~rLvGIYKt--dn~Tksvti~~ 1284 (1293)
T KOG0996|consen 1212 LHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELANRLVGIYKT--DNCTKSVTINP 1284 (1293)
T ss_pred HHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHHHHHhhheeeEee--cCccceeEech
Confidence 5789999999999999999999999999999999 999999999999999999999999997 66676666664
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=99.31 E-value=8.8e-12 Score=92.45 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=52.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+....++.++|+++ +.++|+|||+...+. .||+++.+..|+
T Consensus 360 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~~tviivsHd~~~l~~~~d~i~~l~~g~ 418 (718)
T PLN03073 360 FIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-PKTFIVVSHAREFLNTVVTDILHLHGQK 418 (718)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 4689999999999999999999999999886 569999999988875 599999999876
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.30 E-value=4.6e-12 Score=98.94 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=55.2
Q ss_pred cCCCC-EEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh--HhcCceEEEEeee-c-cCCcc
Q psy832 4 YKPSP-FLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF--YFHSDILFGITLK-M-LGSLT 67 (80)
Q Consensus 4 ~~~~~-illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~--~~~~d~~~~i~~~-~-~~~~~ 67 (80)
+.+|+ +++|||||+|||+.++..+.+.|+++ ++.++|+++|+++. +..+|+++.+.+| + +..|.
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 46886 99999999999999999999999998 68999999999875 4679999999987 5 44444
No 358
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=5.5e-12 Score=95.48 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=52.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+|+++||||||++||+.....+.+.|+++ .+.++|+++|++.....||+++.+.++
T Consensus 848 ~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~ 906 (924)
T TIGR00630 848 TGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPE 906 (924)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCC
Confidence 368999999999999999999999999998 689999999999988889999999644
No 359
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.28 E-value=2.5e-12 Score=88.82 Aligned_cols=61 Identities=18% Similarity=0.079 Sum_probs=54.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhh-HhcCceEEEEeeeccC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQF-YFHSDILFGITLKMLG 64 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~-~~~~d~~~~i~~~~~~ 64 (80)
+.+|++|+||||.|+||.+-+.++...++++ .+.|.|+||||.+. +..+||+..+++|++.
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence 4689999999999999999999999999988 58999999998654 5689999999998743
No 360
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.28 E-value=6.3e-12 Score=89.73 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=40.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeCh
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKP 46 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~ 46 (80)
+++|+++|||||||+||+++++++.+.+.+. +++|+|+|||++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 5899999999999999999999999999988 899999999984
No 361
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.28 E-value=4.8e-12 Score=90.60 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=62.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
|.+|.+++||||.|+||.+.+..+.+.+.+. +|.++|+|||++..+..+|++..+..|+ ...|...+++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 5799999999999999999999999999888 8999999999999999999999999987 5666665554
No 362
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.28 E-value=7.2e-12 Score=79.84 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=52.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhh-HhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQF-YFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~-~~~~d~~~~i~~~ 61 (80)
..|++|+||||||+||+.+++.+-+.+..+ ++..+++|||+..- .+.+++++.+..|
T Consensus 150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G 210 (223)
T COG4619 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPG 210 (223)
T ss_pred cCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccC
Confidence 369999999999999999999999999888 78999999999766 6789999999987
No 363
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.28 E-value=5.6e-12 Score=99.04 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=55.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHc---C-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRT---V-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~---~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
+.+|++++|||||++||+.+++.+.+.+.. . +++|+|++||+.+.+..||+++.+.+|+ ...|+
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~ 844 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGS 844 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCC
Confidence 579999999999999999999999998853 4 6789999999999888899999999887 44443
No 364
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.28 E-value=6.1e-12 Score=98.70 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=55.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHH-HHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQY-IRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~-l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
+.+|+++|||||+++||+.+++++++. +..+ +++|+|++||+++.+..||+++.++.|+ ...|.
T Consensus 564 ~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 564 YKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGT 630 (1490)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcC
Confidence 478999999999999999999999974 6667 8899999999999888899999998876 33333
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.27 E-value=6.6e-12 Score=99.09 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=55.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ-YIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~-~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
+++|+++|||||||+||+.+.+++++ .++.. +++|+|+|||+.+....||+++.+.+|+ ...|+
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCC
Confidence 57999999999999999999998875 56666 8899999999999999999999999887 44443
No 366
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.27 E-value=5.1e-12 Score=90.38 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=53.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeCh-hhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKP-QFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~-~~~~~~d~~~~i~~~~ 62 (80)
..+|++|||||||.|+|...+.+++++++++ +|.++|+||-++ +.+..|||++.+..|+
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gr 478 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGR 478 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCE
Confidence 3689999999999999999999999999999 899999999985 5556899999999886
No 367
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.27 E-value=6.5e-12 Score=86.38 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=53.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeCh-hhHhcCceEEEEeeecc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKP-QFYFHSDILFGITLKML 63 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~-~~~~~~d~~~~i~~~~~ 63 (80)
+++|++++||||+|+||.+.+..+...++++ -+.|+|++|||. +.+..+|++..+..|.+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i 212 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCee
Confidence 5799999999999999999999999999887 478999999985 45567999999997763
No 368
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.27 E-value=1.3e-11 Score=97.76 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=52.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
.++|+++||||||++||+....++++.|+++ .+.++|++||+++....||+++.+.
T Consensus 828 ~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 828 SKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELG 885 (1809)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEc
Confidence 4689999999999999999999999999988 6889999999998888899999996
No 369
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.26 E-value=9e-12 Score=94.49 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=49.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEe
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
+++||||||++||+.....+.+.|+++ .+.++|++||+++.+..||+++.+.
T Consensus 853 ~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lg 906 (943)
T PRK00349 853 TLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLG 906 (943)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEec
Confidence 899999999999999999999999988 6889999999999888899999995
No 370
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.7e-11 Score=81.13 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=52.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC----CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV----PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~----~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+++|.+||||||++|||..++..+.+.|.++ .+.++|+|||+.+... ..++++.+..|+
T Consensus 187 v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~ 250 (257)
T COG1119 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250 (257)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCc
Confidence 5799999999999999999999999999988 3789999999987765 578888888875
No 371
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.25 E-value=7.2e-12 Score=97.85 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=56.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeCh--hhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKP--QFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~--~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|++++|||||+|||+.++..+.+.|+++ .+.++|+++|++ .....+|+++.+.+|+ +..|..+
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~ 296 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPAD 296 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHH
Confidence 4689999999999999999999999999998 378999999986 3556799999999987 4545443
No 372
>PRK01156 chromosome segregation protein; Provisional
Probab=99.24 E-value=3e-11 Score=90.84 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=54.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C--C-ceEEEEEeChhhHhcCceEEEEeeeccCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P--K-MNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~--~-~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~ 71 (80)
+.+|++++|||||++||+.....+.+.+... . + .|+|++||+..+...||+++.+.+. +|.|.+
T Consensus 823 ~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~~~~~----~~~s~v 891 (895)
T PRK01156 823 NNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVKKS----SGSSKV 891 (895)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEEEEec----CCeeEE
Confidence 3689999999999999999999999988753 2 3 5899999999988889999999886 555554
No 373
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.7e-11 Score=79.72 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=58.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhc--CceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFH--SDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~--~d~~~~i~~~~-~~~~~~ 68 (80)
+-+|++.|||||+||||...-+.+.+.+.++ .+..+++|||....+.+ .|++..+..|+ +..|++
T Consensus 160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 160 LLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 4689999999999999999999999999998 78999999999888876 59999999998 666665
No 374
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.4e-11 Score=86.83 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=58.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
+|+|++++|||.||+||..+.+++...|++. ++.|.++|.|+.+....||.++.++.|+ .+-|.
T Consensus 415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 415 LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 5899999999999999999999999999999 9999999999999999999999999998 44443
No 375
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.23 E-value=4.4e-11 Score=85.72 Aligned_cols=57 Identities=21% Similarity=0.186 Sum_probs=51.8
Q ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEID-AALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~-~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+|+++|||||| ++||+.....+.+.|.++.+.++|+|||++.....+|+++.+.+.
T Consensus 495 ~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~~~l~~~ 552 (562)
T PHA02562 495 VDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQKFDRHLKMEKV 552 (562)
T ss_pred CCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhhhhcEEEEEEE
Confidence 489999999998 789999999999999987667999999998877789999999886
No 376
>PLN03140 ABC transporter G family member; Provisional
Probab=99.23 E-value=1.2e-11 Score=96.98 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeCh--hhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKP--QFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~--~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|++++|||||+|||+.++.++.+.|+++ .+.|+|+++|++ +....+|+++.+.+|+ +..|...+
T Consensus 352 ~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~ 424 (1470)
T PLN03140 352 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDH 424 (1470)
T ss_pred cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHH
Confidence 5789999999999999999999999999998 478999999985 5567899999999987 55555443
No 377
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.1e-11 Score=83.91 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=60.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+..|.+|+||||.|+||...+++++-+++.+ -+..+++|||.++.. +.||+++.+..|+ ...|...+++.
T Consensus 144 Lt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 144 LTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 4689999999999999999999999999998 478999999997765 5699999999998 66666666554
No 378
>PTZ00243 ABC transporter; Provisional
Probab=99.22 E-value=2e-11 Score=96.13 Aligned_cols=65 Identities=14% Similarity=0.014 Sum_probs=54.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHH-HHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQY-IRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~-l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+....++++. +... +++|+|++||+.+.+..||+++.+++|+ ...|+.
T Consensus 798 ~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~ 865 (1560)
T PTZ00243 798 YANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSS 865 (1560)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCH
Confidence 578999999999999999999988864 3444 7899999999999988899999999886 444443
No 379
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.22 E-value=2.5e-11 Score=77.79 Aligned_cols=58 Identities=21% Similarity=0.133 Sum_probs=49.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C--C-ceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P--K-MNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~--~-~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.....+.+.|.+. . + .+++++||+++.+...|++..+..+
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~ 191 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMK 191 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEec
Confidence 5799999999999999999999999999886 3 3 4789999999887777888776654
No 380
>KOG0054|consensus
Probab=99.21 E-value=2.1e-11 Score=94.85 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=66.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
++++++++|||+||++|+++-..+.+.+++. +++|++.|.|+.+....+||++++.+|+ .+.+++.+.+++
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC
Confidence 5789999999999999999999999999999 9999999999999999999999999999 788888777755
No 381
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.21 E-value=4.7e-11 Score=86.17 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=50.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~ 60 (80)
+.+|-+|||||||++||..+...+.+.|.++.| ++|+||||..++. .|++++.+.+
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~G-tvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDFEG-TVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCC-eEEEEeCCHHHHHhhcceEEEEcC
Confidence 578999999999999999999999999998766 8999999999986 5999998875
No 382
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.21 E-value=3.2e-11 Score=78.15 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=47.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-C-ceEEEEEeChhh-HhcCc--eEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-K-MNVIAVSLKPQF-YFHSD--ILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~-~~ii~ish~~~~-~~~~d--~~~~i~~~ 61 (80)
+.+|+++++||||++||+.++..+.+.+.+. + + .++|++||+... ...+| +++.++.|
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g 210 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNG 210 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecC
Confidence 5799999999999999999999999999887 4 4 579999998643 44555 66666665
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.19 E-value=5.2e-11 Score=94.45 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=51.7
Q ss_pred CCC--CEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPS--PFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~--~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+| ++|||||||++||+....++.+.|+++ .+.|+|+|+|+.+....||+++.+.+|
T Consensus 493 ~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~pG 553 (1809)
T PRK00635 493 AELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIGPG 553 (1809)
T ss_pred cCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEEEEEcCC
Confidence 456 799999999999999999999999998 688999999999977789999999744
No 384
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.19 E-value=5.1e-11 Score=78.24 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=60.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
+.+|++|+||||+.||-|.-.+++++.++++ .++||++|-++...+. .+||.|.+..|+ +.+|...++..+
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 4689999999999999999999999999998 3789999999987764 799999999998 555655554443
No 385
>KOG0061|consensus
Probab=99.19 E-value=1.1e-11 Score=90.69 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChh--hHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQ--FYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~--~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++++||||+|||...+.++.+.|+++ +|++||++=|+|. .+...|+++.+.+|+ +..|.+.
T Consensus 186 l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 186 LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 5799999999999999999999999999999 8999999999875 466799999999887 5555443
No 386
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.17 E-value=7.4e-11 Score=76.65 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=62.9
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeecC
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVHK 74 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~~ 74 (80)
-+++|++|++|||.||+-.+...+..++|+++ ++.++++|.||+.+.+ +|+++-.+..|. .++|+...+-.+
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 35899999999999999999999999999999 8899999999999986 699999999987 677776655433
No 387
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.1e-10 Score=75.11 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=60.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+..|.+++|||||.|||..-+.+++++++.+ -+..++++||+...++ .+++...++.++ ++.|-..+++.
T Consensus 167 Vt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 167 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred ccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccccc
Confidence 4679999999999999999999999999998 4789999999998876 499999999987 66665555554
No 388
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.14 E-value=8.6e-11 Score=75.11 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=50.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHcC--CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ-YIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~-~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++++|||++++|+.....+.. .++.+ .+.++|++||+.+....+|++..+..+.
T Consensus 106 ~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~ 167 (200)
T cd03280 106 ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENAS 167 (200)
T ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEE
Confidence 46899999999999999999998864 56666 5789999999977777899998887764
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.12 E-value=1.2e-10 Score=76.87 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=59.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
...|.+||.||||+++++.++.+++++|..+ ++.+++++|||..... .||++-++|-|+ ++......++
T Consensus 174 AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 174 ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHh
Confidence 4689999999999999999999999999998 6899999999988775 699999999997 4544444433
No 390
>KOG0059|consensus
Probab=99.11 E-value=5.9e-11 Score=89.65 Aligned_cols=65 Identities=14% Similarity=-0.037 Sum_probs=56.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C-CceEEEEEeChhhHh-cCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P-KMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~-~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|++++||||++|+||..++.+++.+++. + +..+|++||.++.++ .|+|+..+.+|+ ...|+.
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence 4689999999999999999999999999998 4 449999999998876 599999988887 554443
No 391
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=3.3e-10 Score=86.67 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=49.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+|++||+||||++||+.....+++.|..+ .|.+|++|||++.+.. .++++.+++.+
T Consensus 978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred CCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC
Confidence 69999999999999999999999999988 6889999999998875 58888877654
No 392
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.3e-10 Score=74.54 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=51.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
..+|++++||||+++||.-+++++..+|-+. .++++++|||+.+... .|++++.+.++
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCC
Confidence 3689999999999999999999999987776 6899999999987765 59999998776
No 393
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.07 E-value=4.7e-10 Score=84.85 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=52.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+-++++|||||..||+++...++..|..+ .+.+|++|||+.++...+|.++.|.+.
T Consensus 841 ~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i~V~k~ 898 (908)
T COG0419 841 RLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRIRVKKD 898 (908)
T ss_pred CCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEEEEEec
Confidence 36899999999999999999999999998 579999999999999999999999997
No 394
>PRK02224 chromosome segregation protein; Provisional
Probab=99.07 E-value=4e-10 Score=84.53 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=49.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CC-ceEEEEEeChhhHhcCceEEEEeee
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV--PK-MNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~--~~-~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
++++||||||++||+.....+.++|..+ .+ .|+|+|||++.+...||+++.+.+.
T Consensus 812 ~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~ 869 (880)
T PRK02224 812 LPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEKD 869 (880)
T ss_pred CCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeecC
Confidence 3679999999999999999999999887 34 5899999999988889999999876
No 395
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=2.8e-10 Score=75.26 Aligned_cols=69 Identities=16% Similarity=0.014 Sum_probs=60.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
..+|++||+||..+.-|+..+++..+.+.++ ++.++|++||+.+... .||+++.+..|. ...|.+.+++
T Consensus 163 ~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 163 HVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred hcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 3589999999999999999999999999998 7899999999998875 699999999998 5666665544
No 396
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.06 E-value=2.3e-10 Score=73.22 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=47.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ-YIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~-~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
..+|+++++|||++++|+.....+.. +++.+ .+.++|++||+.+....++++..+..+
T Consensus 106 ~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~ 166 (202)
T cd03243 106 ATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNL 166 (202)
T ss_pred ccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEE
Confidence 56899999999999999998887755 45555 578999999999888888876666554
No 397
>KOG0018|consensus
Probab=99.04 E-value=2e-10 Score=87.11 Aligned_cols=69 Identities=43% Similarity=0.698 Sum_probs=61.9
Q ss_pred CCccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeeec
Q psy832 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRVH 73 (80)
Q Consensus 1 ~~~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~~ 73 (80)
+|.++++||++|||.+|+||..+..+|..+++. .+.|+|+||....++..+|.+++++++ .++.|.+++
T Consensus 1068 ihsy~PaPFfvlDEiDAALDntNi~kvasyIr~-~~~Q~IvISLK~~~y~kadaLVGvyr~---~~~~S~vlt 1136 (1141)
T KOG0018|consen 1068 IHSYKPAPFFVLDEIDAALDNTNIGKVASYIRS-SNFQFIVISLKEEFYQKADALVGVYRD---QEDCSKVLT 1136 (1141)
T ss_pred hccCCCCCceehhhHHHHhhhccHHHHHHHHhc-CCceEEEEeccHHHhhhhhceeeeccC---cccccceEE
Confidence 578999999999999999999999999999994 679999999999999999999999997 344466665
No 398
>KOG0065|consensus
Probab=99.03 E-value=1.3e-10 Score=89.84 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=53.0
Q ss_pred cCCC-CEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh--HhcCceEEEEeeec
Q psy832 4 YKPS-PFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF--YFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~-~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~--~~~~d~~~~i~~~~ 62 (80)
+.+| .+++|||||||||.+.+..+++.++.+ .|.+|+++=|+|+. ++..|+++.+++|+
T Consensus 945 vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGG 1008 (1391)
T KOG0065|consen 945 VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGG 1008 (1391)
T ss_pred ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCC
Confidence 4567 899999999999999999999999999 79999999999765 56789999998875
No 399
>KOG0062|consensus
Probab=99.02 E-value=9.5e-10 Score=79.04 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=52.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
.++|.+|+|||||++||.++...+.+.|+.++| .||+|||+.++.. .|+.++.+..|+
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~ 556 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG-GVVLVSHDEEFISSLCKELWVVEDGK 556 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhcCC-cEEEEECcHHHHhhcCceeEEEcCCc
Confidence 478999999999999999999999999998744 6899999999986 599999998875
No 400
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.02 E-value=8.1e-10 Score=72.63 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=53.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhh-HhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQF-YFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~-~~~~d~~~~i~~~~ 62 (80)
+++|++++|||=||+|||+++..+++.=.+. .+.|.++|||+++- +.+.+|.+.+..|+
T Consensus 164 l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~ 226 (263)
T COG1101 164 LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226 (263)
T ss_pred cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCe
Confidence 5789999999999999999999999987777 58899999999764 56899999999886
No 401
>KOG0056|consensus
Probab=98.99 E-value=3.1e-10 Score=81.89 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=56.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeecc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKML 63 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~~ 63 (80)
+|.|.+++|||.||+||..+.+.+...|.+. .+.|-|+|.|+.+..-.||.++.+.+|++
T Consensus 690 LK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~I 750 (790)
T KOG0056|consen 690 LKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRI 750 (790)
T ss_pred hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeE
Confidence 5899999999999999999999999999999 99999999999999999999999999973
No 402
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.99 E-value=7.6e-11 Score=75.76 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=63.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh-HhcCceEEEEeeec-cCCcceeeeecCCcCC
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF-YFHSDILFGITLKM-LGSLTIKGRVHKASLN 78 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~-~~~~d~~~~i~~~~-~~~~~~~~~~~~~~l~ 78 (80)
.+++++|||.++||...+..+.+++.++ +|.++|+.+||.+. ++.||+++.+.+|+ +..|...++++++.|.
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~ 226 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLA 226 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHH
Confidence 3799999999999999999999999998 79999999999876 56799999999998 7888888888876654
No 403
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.98 E-value=6.9e-10 Score=71.06 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=51.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
.+-|+|+|||||++||..++..+.+++.+. +|..++-|=||.+... .|||++.+...
T Consensus 169 vd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~~ 228 (235)
T COG4778 169 VDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSAF 228 (235)
T ss_pred ccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecccC
Confidence 467999999999999999999999999988 8999999999988765 59999987663
No 404
>KOG0062|consensus
Probab=98.96 E-value=1.2e-09 Score=78.48 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=48.1
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEee
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITL 60 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~ 60 (80)
.+++|++|+|||||+.||..+..++..+|..++ .|+|+||||-+++. .|..|+....
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-~T~liVSHDr~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK-ITSLIVSHDRNFLNTVCTDIIHLEN 270 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC-ceEEEEeccHHHHHHHHHHHHHHhh
Confidence 358999999999999999999999999998865 79999999988876 3666655443
No 405
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.96 E-value=2.6e-09 Score=81.97 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=51.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRV 72 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~ 72 (80)
+|+++|+||||++||+.....+++.|..+ .|.+|++|||...+......-+.|.++ .++|.|.+-
T Consensus 975 ~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~--~g~g~S~v~ 1041 (1047)
T PRK10246 975 RIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKI--NGLGYSKLD 1041 (1047)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceEEEEEC--CCCCcceee
Confidence 78999999999999999999999999998 789999999988887654444555554 223455543
No 406
>KOG0964|consensus
Probab=98.96 E-value=1.9e-10 Score=86.81 Aligned_cols=61 Identities=30% Similarity=0.572 Sum_probs=58.1
Q ss_pred CCccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 1 ~~~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
||++.++||+||||.+|+||++.+..|..+++++ ...|+|++|.+++++..||+.|++...
T Consensus 1114 IQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~vAdKfygV~f~ 1175 (1200)
T KOG0964|consen 1114 IQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSVADKFYGVKFE 1175 (1200)
T ss_pred HHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHHHHhhhceeec
Confidence 5789999999999999999999999999999999 789999999999999999999999775
No 407
>KOG0927|consensus
Probab=98.95 E-value=1.4e-09 Score=78.54 Aligned_cols=58 Identities=22% Similarity=0.218 Sum_probs=52.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
++.|.+|+|||||++||.+.+..+-++|..+ .. ++++++|.-+++. .|.+|+.++.++
T Consensus 237 f~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 237 FQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKK 296 (614)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccc
Confidence 4789999999999999999999999999988 44 8999999988876 599999998875
No 408
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=4.1e-09 Score=82.30 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=48.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-------CCceEEEEEeChhhHh------cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-------PKMNVIAVSLKPQFYF------HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-------~~~~ii~ish~~~~~~------~~d~~~~i~~~ 61 (80)
+.+|++++|||||++||+.+...+...|..+ .+.++|+|||++.++. .+++.|.+.+.
T Consensus 1221 ~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~ 1291 (1311)
T TIGR00606 1221 CLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKN 1291 (1311)
T ss_pred hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeec
Confidence 4689999999999999999999988877664 2679999999987643 36788888775
No 409
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.91 E-value=3e-09 Score=68.32 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHcC--CCceEEEEEeChhhHhc
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQ-YIRTV--PKMNVIAVSLKPQFYFH 51 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~-~l~~~--~~~~ii~ish~~~~~~~ 51 (80)
+|+++|+|||++++|+.....+.. .++.+ .+.++|++||+.+....
T Consensus 105 ~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 105 EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADL 153 (199)
T ss_pred CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence 899999999999999999887654 56665 68899999999877653
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.89 E-value=3.5e-09 Score=69.06 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=46.2
Q ss_pred cCCCCEEEEeCC---CCCCCHHHHHHHH-HHHHcCCCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEI---DAALDNINIWKTI-QYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp---~~~LD~~~~~~i~-~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||| |+++|+....+.. +.+.+..+.++|++||..+....||++..+..++
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~ 169 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLH 169 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEE
Confidence 578999999999 8899998886544 4444324689999999877777899888777764
No 411
>KOG0054|consensus
Probab=98.88 E-value=2.5e-09 Score=83.56 Aligned_cols=69 Identities=25% Similarity=0.226 Sum_probs=60.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ-YIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~-~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
|+++++++||.|+|++|....+.+++ .++.+ +++|+|++||..+.+..||.++.+++|+ ...|+.+++.
T Consensus 659 Y~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 659 YQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred hccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence 58999999999999999999999997 56555 8999999999999999999999999998 5666655443
No 412
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.88 E-value=3.5e-09 Score=79.36 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=53.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
...-++||||||.||.....+++++.|.++ +|-|+|+|-|+++....||.++-+.+++
T Consensus 842 tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeG 901 (935)
T COG0178 842 TGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEG 901 (935)
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCC
Confidence 455799999999999999999999999999 8899999999999999999999998864
No 413
>KOG0927|consensus
Probab=98.85 E-value=2.5e-09 Score=77.33 Aligned_cols=59 Identities=24% Similarity=0.182 Sum_probs=49.5
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
.++.|.+|+|||||++||.++...+.++|.++.| ++|++|||..++. .++.++...++.
T Consensus 524 ~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~G-gvv~vSHDfrlI~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 524 AVKQPHLLLLDEPTNHLDIETIDALAEAINEFPG-GVVLVSHDFRLISQVAEEIWVCENGT 583 (614)
T ss_pred HhcCCcEEEecCCCcCCCchhHHHHHHHHhccCC-ceeeeechhhHHHHHHHHhHhhccCc
Confidence 3689999999999999999999999999999744 6799999987765 477777766654
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.85 E-value=7e-09 Score=65.68 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=40.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHcC--C-CceEEEEEeChhhHhcCce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ-YIRTV--P-KMNVIAVSLKPQFYFHSDI 54 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~-~l~~~--~-~~~ii~ish~~~~~~~~d~ 54 (80)
..+|+++++|||++++|+.....+.. .++.+ + +.++|++||+.+....++.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 35899999999999999998777654 45554 3 7899999999887666664
No 415
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.81 E-value=1.5e-08 Score=65.59 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=52.0
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhc-CceEEEEeee
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFH-SDILFGITLK 61 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~-~d~~~~i~~~ 61 (80)
++.+..+++||||-|+|.|..+-+++..|+.+ .|.|+|+.||.+-++.+ .-.++.+..+
T Consensus 143 rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 143 RFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred HhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecC
Confidence 35678899999999999999999999999999 78999999999988776 6678877776
No 416
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.79 E-value=1.4e-08 Score=63.80 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=37.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC-C-CceEEEEEeChhhH
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV-P-KMNVIAVSLKPQFY 49 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~-~-~~~ii~ish~~~~~ 49 (80)
+++++|||.++|+|..+.++.+.|++. + +.|+|++||.+.++
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 899999999999999999999999888 5 89999999998764
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.74 E-value=1.3e-08 Score=66.19 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=41.5
Q ss_pred cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEI---DAALDNINI-WKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp---~~~LD~~~~-~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|++++|||| |+++|.... ..+.+.+.+..+.++|++||+.++...++++..+..+
T Consensus 107 ~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~ 168 (216)
T cd03284 107 ATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNF 168 (216)
T ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEE
Confidence 568999999999 888887653 4444555432378999999998777777765544444
No 418
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.74 E-value=3.2e-08 Score=70.89 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=52.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C-CceEEEEEeChhhHhc-CceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P-KMNVIAVSLKPQFYFH-SDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~-~~~ii~ish~~~~~~~-~d~~~~i~~~ 61 (80)
.++++++++|||+|.||...+-.+.+.++++ + ++++|+|.||...+.+ +|.+..++..
T Consensus 229 ~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~ 289 (591)
T COG1245 229 LRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE 289 (591)
T ss_pred hccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC
Confidence 4789999999999999999999999999999 5 7999999999998875 8988888775
No 419
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.73 E-value=6.1e-08 Score=70.39 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=53.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.|.+||||.++|+..+.+..|.+.|+++ ...||++|||-|.....+|..+.|.+..
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K~~ 510 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLVEKES 510 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEEEEec
Confidence 56799999999999999999999999999 8999999999999999999999999873
No 420
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=3.1e-08 Score=66.02 Aligned_cols=56 Identities=18% Similarity=0.068 Sum_probs=42.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhh-HhcC---ceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQF-YFHS---DILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~-~~~~---d~~~~i~~~ 61 (80)
+.+|+++++|||+++||+..+..+.+.+++.. ++++++|+... ...| .+++.+..|
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~--q~ii~~~~~~~~~~~~~~~~~i~~l~~g 267 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAALLDAIEGRV--QTFVTTTDLADFDALWLRRAQIFRVDAG 267 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC--CEEEEeCCchhccchhccCccEEEEeCc
Confidence 46899999999999999999999999997653 56666665443 3345 577777665
No 421
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.72 E-value=2.8e-08 Score=72.70 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=52.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+..|++++|||.|++||++++.++++.+++. .++++|-|+|++......++.+.+.+.
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~~ 589 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLDD 589 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeeccc
Confidence 4789999999999999999999999999998 999999999999888887777777654
No 422
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3e-08 Score=63.89 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=40.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY 49 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~ 49 (80)
+..+|++|||||+++||.+....+...+.+. ++-.||.+||.+...
T Consensus 146 ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 146 LSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 4688999999999999999999999998887 788999999986654
No 423
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.67 E-value=5.7e-08 Score=73.05 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=50.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 9 FLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 9 illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+++||||+.||.++...++++.|+.+ .|-|+|+|.||.+.+..||+++-+.+|
T Consensus 504 lYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPg 558 (935)
T COG0178 504 LYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPG 558 (935)
T ss_pred EEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCC
Confidence 68999999999999999999999998 688999999999999999999999876
No 424
>KOG0066|consensus
Probab=98.65 E-value=7e-08 Score=69.46 Aligned_cols=57 Identities=25% Similarity=0.220 Sum_probs=45.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCc-eEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSD-ILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d-~~~~i~~~ 61 (80)
+..|++|||||||++||.+....+.+.+.++.| .+|+|||+..++...+ .++++...
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~G-gVi~VsHDeRLi~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNG-GVIMVSHDERLIVETDCNLWVVENQ 777 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccC-cEEEEecccceeeecCceEEEEccC
Confidence 568999999999999999999999999998744 6899999987764322 45555554
No 425
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.64 E-value=8e-08 Score=68.89 Aligned_cols=58 Identities=22% Similarity=0.130 Sum_probs=52.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhc-CceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFH-SDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~-~d~~~~i~~~ 61 (80)
.+++++++||||.|.||.+.+-.+.+.++.. .+++.++|.||.-+..+ +||++.+...
T Consensus 471 ~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~Ge 532 (591)
T COG1245 471 SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGE 532 (591)
T ss_pred ccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecC
Confidence 4789999999999999999999999999987 68899999999998876 9999987654
No 426
>KOG0933|consensus
Probab=98.59 E-value=4e-08 Score=74.74 Aligned_cols=59 Identities=34% Similarity=0.561 Sum_probs=55.2
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.++++|+|||||.+|+||-.+.+.|..+|+.. .+.|+|+||....++..||.++..+..
T Consensus 1101 ~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeGMF~NANvLFrtrF~ 1160 (1174)
T KOG0933|consen 1101 KFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEGMFNNANVLFRTRFV 1160 (1174)
T ss_pred cCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhhccccchhhheeeee
Confidence 57899999999999999999999999999999 999999999999999999999877664
No 427
>PRK00064 recF recombination protein F; Reviewed
Probab=98.57 E-value=1.8e-07 Score=64.88 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=45.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-c--CceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-H--SDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~--~d~~~~i~~~ 61 (80)
..+||+++||||+++||+..+..+.+.+.+. +.+++++||+..... . .++++.+..|
T Consensus 298 ~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~-~~qv~it~~~~~~~~~~~~~~~i~~v~~G 357 (361)
T PRK00064 298 TGEAPILLLDDVASELDDGRRAALLERLKGL-GAQVFITTTDLEDLADLLENAKIFHVEQG 357 (361)
T ss_pred hCCCCEEEEccchhhhCHHHHHHHHHHHhcc-CCEEEEEcCChhhhhhhhccCcEEEEeCC
Confidence 4689999999999999999999999988754 348899999865432 2 3467777766
No 428
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.53 E-value=1.2e-07 Score=61.19 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=38.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHcC--CCceEEEEEeChhhHhc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ-YIRTV--PKMNVIAVSLKPQFYFH 51 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~-~l~~~--~~~~ii~ish~~~~~~~ 51 (80)
+.+|+++++|||++|+|+.....+.. .++.+ .+.++|++||+.+....
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 46899999999999999987665543 45554 68899999999887654
No 429
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.47 E-value=1.6e-07 Score=59.35 Aligned_cols=56 Identities=18% Similarity=0.061 Sum_probs=45.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
+..|++++||||+|.||..-+.++.+..-.. .+...+.||||..-.....|++.+-
T Consensus 150 la~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~~ 208 (213)
T COG4136 150 LAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEMA 208 (213)
T ss_pred HhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeeee
Confidence 3579999999999999999888887754443 6889999999987776667887664
No 430
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=5.1e-07 Score=62.79 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=38.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhH
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFY 49 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~ 49 (80)
..||+++||||+++||+..+..+++.+.+. +.|++++||+.+.+
T Consensus 301 ~~~pilLLDD~~seLD~~~r~~l~~~l~~~-~~qv~it~~~~~~~ 344 (365)
T TIGR00611 301 GEYPILLLDDVASELDDQRRRLLAELLQSL-GVQVFVTAISLDHL 344 (365)
T ss_pred CCCCEEEEcCchhccCHHHHHHHHHHHhhc-CCEEEEEecChhhc
Confidence 479999999999999999999999999753 56999999986543
No 431
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.42 E-value=5.2e-07 Score=64.70 Aligned_cols=59 Identities=15% Similarity=-0.022 Sum_probs=53.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh-HhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF-YFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~-~~~~d~~~~i~~~~ 62 (80)
.++|++||+-+||-|||....+.+.+.|.+. +|+.++++|.+.+. +..||++..++.|+
T Consensus 419 ~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gr 480 (501)
T COG3845 419 ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGR 480 (501)
T ss_pred ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCc
Confidence 3689999999999999999999999988887 79999999999766 46799999999997
No 432
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.36 E-value=8.5e-07 Score=57.71 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=61.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeec
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
-.|+++|.||..++||...+.++.+++-++ .|...|.|+.+..+.. .+|+++++..|+ ++.|...++++
T Consensus 166 L~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 166 LRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred cCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhc
Confidence 379999999999999999999999988877 5899999999999886 599999999998 77777776664
No 433
>PF13175 AAA_15: AAA ATPase domain
Probab=98.35 E-value=7.3e-07 Score=61.30 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=37.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhh
Q psy832 9 FLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQF 48 (80)
Q Consensus 9 illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~ 48 (80)
++++|||-++|.|..++.+++.|.++ . +.|+|++||.+.+
T Consensus 372 illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 372 ILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 99999999999999999999999998 5 8999999999865
No 434
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.35 E-value=1.1e-06 Score=57.09 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=36.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHcC--C---CceEEEEEeChhhHhc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKT-IQYIRTV--P---KMNVIAVSLKPQFYFH 51 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i-~~~l~~~--~---~~~ii~ish~~~~~~~ 51 (80)
+.+++++++|||++|+|+.....+ ...++.+ . +.++|++||+.+....
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 468999999999999999764444 3456555 2 2489999999877543
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.30 E-value=1.4e-06 Score=54.30 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=46.0
Q ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHHHHcC--CCceEEEEEeChhh----------HhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALD---NINIWKTIQYIRTV--PKMNVIAVSLKPQF----------YFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD---~~~~~~i~~~l~~~--~~~~ii~ish~~~~----------~~~~d~~~~i~~~ 61 (80)
.+|+++++|||++.+| ......+.+.++.+ .+.++|+++|.... ...||.++.++..
T Consensus 94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEEE
Confidence 4799999999999999 77777777777776 68899999997542 3359999988765
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.26 E-value=1.5e-06 Score=56.82 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=40.0
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHH-HHcC--C-CceEEEEEeChhhHh
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQY-IRTV--P-KMNVIAVSLKPQFYF 50 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~-l~~~--~-~~~ii~ish~~~~~~ 50 (80)
...+|.++++|||++|.++.....+... ++.+ . +.++|++||+.+...
T Consensus 106 ~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~ 157 (218)
T cd03286 106 HATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCD 157 (218)
T ss_pred hCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 3467899999999999999998888876 5555 3 899999999987754
No 437
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.24 E-value=3.1e-06 Score=64.04 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=49.8
Q ss_pred cCCCCEEEEeCCCCCC-CHHHHHHHHHHHHcC--CCceEEEEEeChhhH----------hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAAL-DNINIWKTIQYIRTV--PKMNVIAVSLKPQFY----------FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~L-D~~~~~~i~~~l~~~--~~~~ii~ish~~~~~----------~~~d~~~~i~~~~ 62 (80)
..+|+++++|||+++| |+...+.+.+.++.. .+.+++++||+++.+ ..|++.+.+.+++
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~ 721 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGA 721 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcc
Confidence 3689999999999999 689999999999987 688999999997654 3688888776653
No 438
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.19 E-value=2.8e-06 Score=64.13 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=39.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHcC--CCceEEEEEeChhhHhc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQ-YIRTV--PKMNVIAVSLKPQFYFH 51 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~-~l~~~--~~~~ii~ish~~~~~~~ 51 (80)
+.+|+++|+|||++|+|+.....+.. .+..+ .+.++|++||+.+....
T Consensus 405 ~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 405 ADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred CCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 46889999999999999999888865 45555 68899999999887654
No 439
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.16 E-value=7.8e-06 Score=55.01 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=41.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhh--H------------hcCceEEEEeeeccCCccee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQF--Y------------FHSDILFGITLKMLGSLTIK 69 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~--~------------~~~d~~~~i~~~~~~~~~~~ 69 (80)
.+|+++++|||++ .+.+...++.+ .+.++|++||+... + ..+++++.+.+++ ..+.+.
T Consensus 193 ~~P~villDE~~~------~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~-~~g~~~ 265 (270)
T TIGR02858 193 MSPDVIVVDEIGR------EEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK-GPGTVE 265 (270)
T ss_pred CCCCEEEEeCCCc------HHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC-CCCcee
Confidence 5899999999974 23344445555 78999999997655 2 3479999998763 444444
Q ss_pred ee
Q psy832 70 GR 71 (80)
Q Consensus 70 ~~ 71 (80)
++
T Consensus 266 ~i 267 (270)
T TIGR02858 266 AV 267 (270)
T ss_pred ec
Confidence 43
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.16 E-value=3.9e-06 Score=63.29 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=39.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHH-HHHHcC--CCceEEEEEeChhhHh
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTI-QYIRTV--PKMNVIAVSLKPQFYF 50 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~-~~l~~~--~~~~ii~ish~~~~~~ 50 (80)
+.+++++|+|||++|+|+.....+. ..++.+ .+.++|++||+.++..
T Consensus 400 ~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 400 TTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 4578999999999999999999885 566665 6889999999977644
No 441
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.12 E-value=3.4e-06 Score=55.22 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=36.0
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHH-HHHHHcC---CCceEEEEEeChhhHh
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKT-IQYIRTV---PKMNVIAVSLKPQFYF 50 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i-~~~l~~~---~~~~ii~ish~~~~~~ 50 (80)
.+.+++++|+|||.+|.++.....+ ...++.+ .+.++|++||+.++..
T Consensus 107 ~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 107 NCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred hCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 4568899999999888886666554 3445554 3789999999977654
No 442
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.06 E-value=7.5e-06 Score=64.76 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=37.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~ 46 (80)
.+|++++|||||+++|+.+...+++++.++ +.++|++|+..
T Consensus 1276 ~~p~lilLDEp~a~lD~~~~~~~~~ll~~l-~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1276 HAPRLILLDEAFAGVDDNARAHLFGLLRAL-DLDFVMTSERE 1316 (1353)
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHh-CCCEEEEccch
Confidence 689999999999999999999999999886 66889999874
No 443
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.04 E-value=2.3e-06 Score=60.81 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=52.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
-+-|++++||=-+--||..++.+++.+-.. +|+||+.||||..-+..|||.+.+..|+
T Consensus 465 EeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~ 525 (546)
T COG4615 465 EERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQ 525 (546)
T ss_pred hhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCc
Confidence 356999999999999999999999866554 7999999999999899999999998886
No 444
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.99 E-value=1.7e-05 Score=54.90 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=44.7
Q ss_pred CccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhc
Q psy832 2 YRYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFH 51 (80)
Q Consensus 2 ~~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~ 51 (80)
.+.+.|+++++|||-.+|-|..-..+...+++. +..||+++||.+.+++.
T Consensus 286 lsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~ 336 (373)
T COG4637 286 LSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNA 336 (373)
T ss_pred cCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhh
Confidence 456789999999999999999999999999998 77799999999887764
No 445
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.99 E-value=1.2e-05 Score=45.73 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=26.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT 33 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~ 33 (80)
..+.+++|||||++||+++.+.+++++++
T Consensus 62 ~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 62 DSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 45789999999999999999999998863
No 446
>KOG0066|consensus
Probab=97.98 E-value=1.9e-06 Score=62.31 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=47.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+-.|.+|.|||||++||....-++-++|..| ..|+++|||+-.++. .|..+|.+...+
T Consensus 428 flEPTLLMLDEPTNHLDLNAVIWLdNYLQgW-kKTLLIVSHDQgFLD~VCtdIIHLD~qk 486 (807)
T KOG0066|consen 428 FLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW-KKTLLIVSHDQGFLDSVCTDIIHLDNQK 486 (807)
T ss_pred hcCceeeeecCCccccccceeeehhhHHhhh-hheeEEEecccchHHHHHHHHhhhhhhh
Confidence 3578999999999999998888887788765 359999999988876 488888776554
No 447
>PRK14079 recF recombination protein F; Provisional
Probab=97.94 E-value=2.8e-05 Score=53.79 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
..||+++||||++.||...+..+.+.+... .++++++- +....+++++.+..|
T Consensus 289 ~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t--~~~~~~~~~~~~~~~ 341 (349)
T PRK14079 289 GEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGT--EAPPGAALTLRIEAG 341 (349)
T ss_pred CCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcC--CCCCCCceEEEEecc
Confidence 689999999999999999999999888653 24444422 344568899988776
No 448
>KOG0962|consensus
Probab=97.94 E-value=1.4e-05 Score=62.64 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=46.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-------CCceEEEEEeChhhHh------cCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-------PKMNVIAVSLKPQFYF------HSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-------~~~~ii~ish~~~~~~------~~d~~~~i~~~ 61 (80)
.+..+|=|||||.+||..+...++..+... .+.+.|+||||..++. ++.++|.+.+.
T Consensus 1206 snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~kd 1275 (1294)
T KOG0962|consen 1206 SNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVKKD 1275 (1294)
T ss_pred hccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhcccchheeeeccc
Confidence 467899999999999999999888766654 5899999999976643 46777877664
No 449
>KOG0060|consensus
Probab=97.93 E-value=2.5e-05 Score=57.40 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=51.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|++-+|||.||++|.+.+..+++.+++ .+.|.|-|+|+..+...-|.++.+..+
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~-~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCRE-MGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHH-cCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 358999999999999999999999998887 689999999999999999999888664
No 450
>PRK13695 putative NTPase; Provisional
Probab=97.88 E-value=1.6e-05 Score=49.54 Aligned_cols=57 Identities=9% Similarity=-0.043 Sum_probs=40.0
Q ss_pred cCCCCEEEEeC--CCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDE--IDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDE--p~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
..+|+++++|| |+.++++...+.+.+.++ .+.++|+++|+......+|++..+.+++
T Consensus 94 l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~--~~~~~i~v~h~~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKSPKFVKAVEEVLD--SEKPVIATLHRRSVHPFVQEIKSRPGGR 152 (174)
T ss_pred cCCCCEEEEECCCcchhhhHHHHHHHHHHHh--CCCeEEEEECchhhHHHHHHHhccCCcE
Confidence 46899999999 555666655555555553 5789999999865555677776665543
No 451
>KOG0063|consensus
Probab=97.80 E-value=8.1e-05 Score=53.61 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=51.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhc-CceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFH-SDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~-~d~~~~i~~~ 61 (80)
++.++++++|||.+.||.+.+-+-...++++ .+.-+|+|-||.+.+.+ .|-+..++.-
T Consensus 229 vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGv 289 (592)
T KOG0063|consen 229 VQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGV 289 (592)
T ss_pred hhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecC
Confidence 4789999999999999999999999999998 68899999999998875 7877776654
No 452
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.76 E-value=6.1e-05 Score=57.40 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=40.0
Q ss_pred cCCCCEEEEeCCCCCC-CHHHHHHHHHHHHcC--CCceEEEEEeChhhH
Q psy832 4 YKPSPFLLLDEIDAAL-DNINIWKTIQYIRTV--PKMNVIAVSLKPQFY 49 (80)
Q Consensus 4 ~~~~~illlDEp~~~L-D~~~~~~i~~~l~~~--~~~~ii~ish~~~~~ 49 (80)
...|.++++|||+.+| |+..+..+.+.++.. .+.+++++||+++.+
T Consensus 685 ~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~ 733 (852)
T PRK13891 685 KGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDA 733 (852)
T ss_pred cCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3678999999999999 788899998988877 688999999987654
No 453
>KOG2355|consensus
Probab=97.70 E-value=7.3e-05 Score=49.56 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=51.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChh-hHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQ-FYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~-~~~~~d~~~~i~~~~ 62 (80)
+++=++|+|||.|--||.-.+..+++++++. +++||+..||-.+ +...+.+++.+..|+
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gk 225 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGK 225 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCe
Confidence 4566899999999999999999999999987 7999999999644 445688998888886
No 454
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.70 E-value=3.1e-05 Score=49.57 Aligned_cols=31 Identities=3% Similarity=0.057 Sum_probs=28.8
Q ss_pred cCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHcC
Q psy832 4 YKPSPFLLLDEID-----AALDNINIWKTIQYIRTV 34 (80)
Q Consensus 4 ~~~~~illlDEp~-----~~LD~~~~~~i~~~l~~~ 34 (80)
+.+|+++++|||| ++||+...+.+.+.++++
T Consensus 168 ~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 168 TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred hhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 4689999999999 999999999999999876
No 455
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.58 E-value=0.00016 Score=47.41 Aligned_cols=56 Identities=9% Similarity=0.308 Sum_probs=40.1
Q ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHHHHHcC--CCceEEEEEeChhh--------Hh-cCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAAL----DNINIWKTIQYIRTV--PKMNVIAVSLKPQF--------YF-HSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~L----D~~~~~~i~~~l~~~--~~~~ii~ish~~~~--------~~-~~d~~~~i~~~ 61 (80)
.+|+++++|||++++ |+.....+.+.++.+ .+.++++ ||+... .. .||-++.++..
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~~~ 186 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLEVK 186 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEEEe
Confidence 468999999999999 778788888888877 4665555 554322 12 36777777653
No 456
>KOG0065|consensus
Probab=97.57 E-value=9.8e-05 Score=58.34 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=55.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC--hhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK--PQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~--~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.++.++.+||+|.|||..+.-++++.++++ -+.|.++.=++ ++.+...|.++.++.|+ +-.|...+
T Consensus 276 v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~ 348 (1391)
T KOG0065|consen 276 VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE 348 (1391)
T ss_pred ecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHH
Confidence 5789999999999999999999999999998 46677777675 56677899999999998 55554443
No 457
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.55 E-value=0.00014 Score=55.05 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=37.8
Q ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 5 KPSPFLLLDEIDAALD-NINIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-~~~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
..|.++++|||+++|| +..+..+.+.++.. .+.+++++||++..
T Consensus 634 ~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 634 GRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred CCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 4789999999999999 67788888888877 68899999998653
No 458
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.53 E-value=0.00018 Score=51.74 Aligned_cols=57 Identities=23% Similarity=0.354 Sum_probs=49.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh--cCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF--HSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~--~~d~~~~i~~~ 61 (80)
..|.+++.||..|.||+.++.++++-+.++ .+.|++++||+++... ..|+++.+.-|
T Consensus 524 erpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg 585 (593)
T COG2401 524 ERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYG 585 (593)
T ss_pred cCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecc
Confidence 568999999999999999999999999998 5899999999999875 37888766544
No 459
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00025 Score=48.85 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=35.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH
Q psy832 10 LLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY 49 (80)
Q Consensus 10 lllDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~ 49 (80)
+++|||+.+||+..+..+++.+++. .+.++|++||+++.+
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~l 156 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKV 156 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhC
Confidence 4468999999999999999999988 788999999987643
No 460
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00032 Score=51.70 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcC--ceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHS--DILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~--d~~~~i~~ 60 (80)
...|.++|.+||-+.|.|+.+..++++++.+ .+.|+|++||.+++...+ +.++.+.+
T Consensus 299 ~~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~lvr 358 (581)
T COG3593 299 VARPNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLADLDSICRLVR 358 (581)
T ss_pred hcccceEEEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccCcccEEEEEE
Confidence 3445599999999999999999999999988 789999999998887643 45554444
No 461
>KOG0063|consensus
Probab=97.36 E-value=0.00017 Score=51.96 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=48.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHhc-CceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYFH-SDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~~-~d~~~~i~~~ 61 (80)
+++++++.|||.+.||.+.+......+++. .++|-.+|-|+.-+..+ |||++.....
T Consensus 473 KpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 473 KPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred CCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 688999999999999999988877777776 67899999999877765 9999866443
No 462
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.34 E-value=0.00099 Score=43.31 Aligned_cols=56 Identities=7% Similarity=0.140 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCC---CCHHHHHHHHHHHHcC--CCceEEEEEeChhh--------HhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAA---LDNINIWKTIQYIRTV--PKMNVIAVSLKPQF--------YFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~---LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~--------~~~~d~~~~i~~~ 61 (80)
+|+++++|||++. .|.....+++..++.+ .+.++++++|.... ...+|-++.++..
T Consensus 120 ~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~~ 188 (234)
T PRK06067 120 REDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRAE 188 (234)
T ss_pred CCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEee
Confidence 7899999999964 4555555655556554 67899999996432 2347877777654
No 463
>PF13166 AAA_13: AAA domain
Probab=97.30 E-value=0.00065 Score=50.42 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=40.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC----CCceEEEEEeChhhH
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV----PKMNVIAVSLKPQFY 49 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~----~~~~ii~ish~~~~~ 49 (80)
...+++|+|.|-|+||......++..|.+. ...|||+-||+..++
T Consensus 526 ~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~ 574 (712)
T PF13166_consen 526 NKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFF 574 (712)
T ss_pred CcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHH
Confidence 367899999999999999999999999887 468999999997764
No 464
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.20 E-value=0.00088 Score=49.73 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHcCCCceEEEEEeChhh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQ-YIRTVPKMNVIAVSLKPQF 48 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~-~l~~~~~~~ii~ish~~~~ 48 (80)
+.|++ +|||++.||...+..+.. ++.. ...|||+.||+.++
T Consensus 575 ~~p~i-iD~p~~~lD~~~r~~l~~~~~~~-~~~QvIils~d~e~ 616 (650)
T TIGR03185 575 RLPVI-IDTPLGRLDSSHRENLVVNYFPK-ASHQVLLLSTDEEV 616 (650)
T ss_pred CCCEE-EcCCccccChHHHHHHHHHHhhc-cCCeEEEEechHhh
Confidence 46774 599999999999999875 5554 35699999998554
No 465
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.19 E-value=0.00088 Score=50.78 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=38.2
Q ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 5 KPSPFLLLDEIDAALD-NINIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-~~~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
..|.++++|||+..|| +..++.+.+.++.. .+..++++||+++.
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 5789999999999999 88888888888887 67899999998654
No 466
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.17 E-value=0.00075 Score=51.69 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=35.2
Q ss_pred ccCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHcCCCceEEEEEeChhhHhcCce
Q psy832 3 RYKPSPFLLLDEI---DAALDNINI-WKTIQYIRTVPKMNVIAVSLKPQFYFHSDI 54 (80)
Q Consensus 3 ~~~~~~illlDEp---~~~LD~~~~-~~i~~~l~~~~~~~ii~ish~~~~~~~~d~ 54 (80)
...++.++|+||| |+.+|.... ..+++.|.+..+..++++||..++...+++
T Consensus 683 ~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 683 NATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEK 738 (854)
T ss_pred hCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhh
Confidence 4567899999999 888885552 223334333235789999999776655543
No 467
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.92 E-value=0.0022 Score=38.31 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=30.6
Q ss_pred CCCCEEEEeCCCCCCCH----------HHHHHHHHHHHcC--CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEIDAALDN----------INIWKTIQYIRTV--PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~----------~~~~~i~~~l~~~--~~~~ii~ish~~~ 47 (80)
.+++++++||+++.++. ...+.+.+++... .+.++++++|...
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 57899999999965444 4445555555444 4899999999654
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.89 E-value=0.0018 Score=42.36 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCCCEEEEeCCCCC------CCHHHHHHHHHHHHcC---CCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAA------LDNINIWKTIQYIRTV---PKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~------LD~~~~~~i~~~l~~~---~~~~ii~ish~~ 46 (80)
.+|+++|+| |+++ .|+.....+++.|+++ .+.++++++|..
T Consensus 110 ~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 110 RRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred cCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 589999999 7754 6998888899888877 489999999964
No 469
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.80 E-value=0.0033 Score=39.41 Aligned_cols=57 Identities=12% Similarity=0.269 Sum_probs=46.2
Q ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHHHcC-CCceEEEEEeCh--hhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAAL--DNINIWKTIQYIRTV-PKMNVIAVSLKP--QFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~L--D~~~~~~i~~~l~~~-~~~~ii~ish~~--~~~~~~d~~~~i~~~ 61 (80)
.+.+++||||...++ +.-....+.++|++. .+..+|++.+++ .+...||.+-.+..-
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~v 155 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMREV 155 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeeccee
Confidence 457999999999885 555678899999988 888999999973 456789999888764
No 470
>PF13514 AAA_27: AAA domain
Probab=96.79 E-value=0.0018 Score=50.71 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=40.1
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCce
Q psy832 10 LLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDI 54 (80)
Q Consensus 10 lllDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~ 54 (80)
+|+|+++-+.|..-...++++|.++ ++.|||+-||+..++..+..
T Consensus 1055 ~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~~a~~ 1100 (1111)
T PF13514_consen 1055 FILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVELARE 1100 (1111)
T ss_pred EEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHHHHHH
Confidence 7779999999999999999999999 88899999999888765443
No 471
>KOG0064|consensus
Probab=96.37 E-value=0.0012 Score=48.78 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=48.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
+..|+.-+|||.|+++.+.....+++..+. .|.+++-|||++.++.+-..++....
T Consensus 628 yHrPkyalLDEcTsAvsidvE~~i~~~ak~-~gi~llsithrpslwk~h~~ll~~dg 683 (728)
T KOG0064|consen 628 YHRPKYALLDECTSAVSIDVEGKIFQAAKD-AGISLLSITHRPSLWKYHTHLLEFDG 683 (728)
T ss_pred hcCcchhhhhhhhcccccchHHHHHHHHHh-cCceEEEeecCccHHHHHHHHHhccC
Confidence 468999999999999999999999988876 57899999999999887777766643
No 472
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.01 Score=41.71 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-c---CceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-H---SDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~---~d~~~~i~~~ 61 (80)
+.+|||+||+.+|.||...+..++.. .+ .+.|+++++-+.+.+. . .-+++.+..|
T Consensus 301 g~~PILLLDDv~seLD~~Rr~~Ll~~-~~-~~~Q~fvT~t~~~~~~~~~~~~~~~f~V~~g 359 (363)
T COG1195 301 GEYPILLLDDVASELDDGRRAALLDT-IE-LGVQVFVTTTDLEDIDDNLDENAQMFHVEDG 359 (363)
T ss_pred CCCCEEEechhhHhhCHHHHHHHHhh-cc-cCCeEEEEccCHHHhhhhhhccceEEEEecc
Confidence 57899999999999999999999888 32 4667777776654433 2 2366666665
No 473
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.008 Score=41.54 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=39.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY 49 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~ 49 (80)
|+-.++|..+|-|+|.|+.+..+.++|.+. .+.++++-||...+.
T Consensus 259 K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhii 305 (374)
T COG4938 259 KKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHII 305 (374)
T ss_pred cCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHHh
Confidence 566789999999999999999999999998 899999999965543
No 474
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=96.19 E-value=0.0093 Score=45.84 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=34.0
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHH----HHHHHHcCCCceEEEEEeChhhHhcC
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWK----TIQYIRTVPKMNVIAVSLKPQFYFHS 52 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~----i~~~l~~~~~~~ii~ish~~~~~~~~ 52 (80)
+..++.++|+||+..|-++..... +.+.|.+..+..++++||..++...+
T Consensus 668 ~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~ 721 (840)
T TIGR01070 668 NATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALE 721 (840)
T ss_pred hCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHh
Confidence 456789999999966666655555 44444433467899999987665443
No 475
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.07 E-value=0.015 Score=37.20 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=45.8
Q ss_pred CCCCEEEEeCCCCCCCH--HHHHHHHHHHHcC-CCceEEEEEeC--hhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDN--INIWKTIQYIRTV-PKMNVIAVSLK--PQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~--~~~~~i~~~l~~~-~~~~ii~ish~--~~~~~~~d~~~~i~~~ 61 (80)
.+.+++||||...+++. -..+.+.++|+.. .+.-+|++-++ ..++..||.+-.+.++
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~ 175 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELRRS 175 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence 35689999999998854 4577888999988 78888888886 3456789999988775
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.01 E-value=0.012 Score=37.62 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=35.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
.+|+++++||+. |.+....+.+... .|..++.++|..+.....+|++.+.
T Consensus 73 ~~pd~ii~gEir---d~e~~~~~l~~a~--~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 73 QDPDVILVGEMR---DLETIRLALTAAE--TGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred CCcCEEEEcCCC---CHHHHHHHHHHHH--cCCEEEEEecCCcHHHHHhHHHhhc
Confidence 589999999996 6665544443332 5778999999877666667766554
No 477
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.69 E-value=0.019 Score=36.52 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=46.0
Q ss_pred CCCCEEEEeCCCCCCCH--HHHHHHHHHHHcC-CCceEEEEEeCh--hhHhcCceEEEEeeec
Q psy832 5 KPSPFLLLDEIDAALDN--INIWKTIQYIRTV-PKMNVIAVSLKP--QFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~--~~~~~i~~~l~~~-~~~~ii~ish~~--~~~~~~d~~~~i~~~~ 62 (80)
.+-+++||||...+++. -....+.++|++. .+.-+|++.++. .+...||.+-.+..-+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~vK 158 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRPVK 158 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeecccc
Confidence 35689999999988754 3567888999888 788888888863 4567899999988765
No 478
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.019 Score=42.71 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=38.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY 49 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~ 49 (80)
-+++++|.|-+++|.....+++.++++. ++.|+++-||+..++
T Consensus 556 ~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~ 600 (758)
T COG4694 556 NKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFY 600 (758)
T ss_pred CeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceeh
Confidence 3688999999999999999999999988 889999999986543
No 479
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.62 E-value=0.022 Score=36.75 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCCEEEEeCCCCCCCH--HHHHHHHHHHHcC-CCceEEEEEeC--hhhHhcCceEEEEeeec
Q psy832 6 PSPFLLLDEIDAALDN--INIWKTIQYIRTV-PKMNVIAVSLK--PQFYFHSDILFGITLKM 62 (80)
Q Consensus 6 ~~~illlDEp~~~LD~--~~~~~i~~~l~~~-~~~~ii~ish~--~~~~~~~d~~~~i~~~~ 62 (80)
+-+++||||...+++. -...++.++|++. .+.-+|++-++ .++...||.+-.+..-+
T Consensus 115 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~vK 176 (191)
T PRK05986 115 SYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRPVK 176 (191)
T ss_pred CCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccccc
Confidence 4589999999999853 4477888999888 78888888886 34567899999888765
No 480
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.59 E-value=0.03 Score=35.59 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=42.3
Q ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHHHHcC-CCceEEEEEeCh--hhHhcCceEEEEeeec
Q psy832 5 KPSPFLLLDEIDAALD--NINIWKTIQYIRTV-PKMNVIAVSLKP--QFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~~~illlDEp~~~LD--~~~~~~i~~~l~~~-~~~~ii~ish~~--~~~~~~d~~~~i~~~~ 62 (80)
...+++||||...+++ .-....+.++|+.. .+.-+|++-+++ .+...||.+-.+..-+
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlVTem~~vK 157 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLVTEMREVK 157 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEEEEEEECE
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCeeeeeceec
Confidence 4568999999998874 34577888999987 788888888873 4567899999998876
No 481
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.55 E-value=0.027 Score=37.17 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=33.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---C-CceEEEEEeChhhHh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---P-KMNVIAVSLKPQFYF 50 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~-~~~ii~ish~~~~~~ 50 (80)
.+..++|+||+..|=++.....+...+-+. + +..++++||..++..
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 456799999999999999987777644443 3 778999999876643
No 482
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.52 E-value=0.028 Score=40.25 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHcC--CCceEEEEE-eChhhHh
Q psy832 6 PSPFLLLDEIDAALDNI-NIWKTIQYIRTV--PKMNVIAVS-LKPQFYF 50 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~-~~~~i~~~l~~~--~~~~ii~is-h~~~~~~ 50 (80)
++++|++||+...++.. .+.+++..+..+ .+.++|++| |.+..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~ 242 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence 68999999999988765 456788888777 567788877 5665543
No 483
>PRK04296 thymidine kinase; Provisional
Probab=95.41 E-value=0.17 Score=32.08 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeC-----------hhhHhcCceEEEEeeec
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLK-----------PQFYFHSDILFGITLKM 62 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~-----------~~~~~~~d~~~~i~~~~ 62 (80)
+.+++++||. --++.+. +.++++.+ .+.++|++.++ ..+...||.+..+..-+
T Consensus 78 ~~dvviIDEa-q~l~~~~---v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC 143 (190)
T PRK04296 78 KIDCVLIDEA-QFLDKEQ---VVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAIC 143 (190)
T ss_pred CCCEEEEEcc-ccCCHHH---HHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEc
Confidence 5789999999 3455543 34444443 68899999988 34456799999887764
No 484
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.047 Score=38.27 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=38.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhH
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFY 49 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~ 49 (80)
..++++|+||+. .++......+++.+++- .+..+|++||+++..
T Consensus 140 ~~~kVviIDead-~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~l 184 (365)
T PRK07471 140 GGWRVVIVDTAD-EMNANAANALLKVLEEPPARSLFLLVSHAPARL 184 (365)
T ss_pred CCCEEEEEechH-hcCHHHHHHHHHHHhcCCCCeEEEEEECCchhc
Confidence 467899999987 78999999999999987 788899999987643
No 485
>PRK06893 DNA replication initiation factor; Validated
Probab=95.08 E-value=0.048 Score=35.57 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=32.3
Q ss_pred ccCCCCEEEEeCCCCCC-CHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 3 RYKPSPFLLLDEIDAAL-DNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 3 ~~~~~~illlDEp~~~L-D~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
.+.+.+++++||+.... +...+..++..+... .+.+++++|++
T Consensus 88 ~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 88 NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 35678999999999865 666677788888776 56677777665
No 486
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.64 E-value=0.046 Score=37.23 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=36.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CC-ceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PK-MNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~-~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
..+|+++++|||.+ .+.+.+++.. .+ ..++.++|..+.....+|+..+..+
T Consensus 216 r~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~ 268 (308)
T TIGR02788 216 RMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKS 268 (308)
T ss_pred cCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhc
Confidence 36899999999996 3345566665 44 4568999987766667777655443
No 487
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.39 E-value=0.026 Score=37.66 Aligned_cols=55 Identities=4% Similarity=-0.097 Sum_probs=42.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHH-H-HHHHHcCCCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 5 KPSPFLLLDEIDAALDNINIWK-T-IQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~-i-~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+++++.+| ||+.+|..+... + .+.++. .+.+.|++||+.......+.|..+.++.
T Consensus 154 ~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~-~~~~~ivls~~la~~~~~paI~vl~s~s 210 (249)
T cd01128 154 EGGSLTII--ATALVDTGSRMDDVIFEEFKG-TGNMELVLDRRLAERRIFPAIDILKSGT 210 (249)
T ss_pred CCCceEEe--eeheecCCCcccchHHHHHhc-CCCcEEEEchHHhhCCCCCeEEEcCCCC
Confidence 68999999 999999544432 3 333332 4678999999999888999999988873
No 488
>PRK07413 hypothetical protein; Validated
Probab=94.21 E-value=0.078 Score=37.64 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=46.6
Q ss_pred CCCEEEEeCCCCCCCHH--HHHHHHHHHHcC-CCceEEEEEeC---hhhHhcCceEEEEeeec
Q psy832 6 PSPFLLLDEIDAALDNI--NIWKTIQYIRTV-PKMNVIAVSLK---PQFYFHSDILFGITLKM 62 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~--~~~~i~~~l~~~-~~~~ii~ish~---~~~~~~~d~~~~i~~~~ 62 (80)
.-+++||||...+++.. ...++.++|++. .+.-+|++-++ +.++..||.+-.+..-+
T Consensus 305 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADlVTEm~~vK 367 (382)
T PRK07413 305 LYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASVHSEMVCHK 367 (382)
T ss_pred CCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCchheeccccc
Confidence 45899999999988544 466889999988 78888888887 45678899999888765
No 489
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=94.12 E-value=0.034 Score=39.40 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=41.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF 50 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~ 50 (80)
..|.+++.||..-.|.|+.++.+.+.|... ...++|+.||.|..+.
T Consensus 294 ~tpgivLiDeIdlflhP~WQQqi~qkL~saFp~IQfIvstHsP~vls 340 (440)
T COG3950 294 LTPGIVLIDEIDLFLHPKWQQQINQKLLSAFPEIQFIVSTHSPFVLS 340 (440)
T ss_pred CCCceEEeehhhhhcCHHHHHHHHHHHHhhchhhhhhhhcCCceEEE
Confidence 358899999999999999999999999977 8899999999987664
No 490
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.14 Score=36.46 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=43.5
Q ss_pred cCCCCEEEEeCCCC----------CCCHHHHHHHHHHHHcC------CCceEEEEEeChhhHh-------cCceEEEE
Q psy832 4 YKPSPFLLLDEIDA----------ALDNINIWKTIQYIRTV------PKMNVIAVSLKPQFYF-------HSDILFGI 58 (80)
Q Consensus 4 ~~~~~illlDEp~~----------~LD~~~~~~i~~~l~~~------~~~~ii~ish~~~~~~-------~~d~~~~i 58 (80)
-+.|.++++||.+| +=|.+-++.++++|.++ .+.-||+.|.+++.+. ..||.+.+
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEf 319 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEF 319 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeec
Confidence 36799999999875 66999999999999998 4688999999765532 24666654
No 491
>KOG0328|consensus
Probab=93.66 E-value=0.07 Score=37.08 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=37.9
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.++-+.|+|||...-|+.....++++.++-+ .+.|++++|-
T Consensus 166 ~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SA 208 (400)
T KOG0328|consen 166 RTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSA 208 (400)
T ss_pred cccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEec
Confidence 34677899999999999999999999999988 8999999985
No 492
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=93.38 E-value=0.33 Score=35.15 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHcC---CCceEEEEEe-ChhhHhcCceEEEEeeec
Q psy832 6 PSPFLLLDEIDAAL-----DNINIWKT----------IQYIRTV---PKMNVIAVSL-KPQFYFHSDILFGITLKM 62 (80)
Q Consensus 6 ~~~illlDEp~~~L-----D~~~~~~i----------~~~l~~~---~~~~ii~ish-~~~~~~~~d~~~~i~~~~ 62 (80)
.+++||+||-||+- |...++-+ .+.++++ .|.+.|+|+- --..+..||+++.|..-+
T Consensus 340 Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 340 GARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred CCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence 57899999999997 44444444 2334444 4555555554 456677899999987753
No 493
>COG1106 Predicted ATPases [General function prediction only]
Probab=93.25 E-value=0.21 Score=35.35 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
+.+++++||+.++|.|.-...+.+.+.+. .+.|++++||.....
T Consensus 270 ~~k~l~iDEie~~lHp~lm~~~l~~~~~~~~~~niq~~~TTH~~e~i 316 (371)
T COG1106 270 NDKVLLIDEIENGLHPSLMILILETLEDKVKNNNIQVFLTTHSTEFI 316 (371)
T ss_pred CCceEEeehhhhccCHHHHHHHHHHHHhhcccceEEEEeecccHHHH
Confidence 44899999999999999999999888776 457899999986654
No 494
>PRK07413 hypothetical protein; Validated
Probab=93.21 E-value=0.28 Score=34.86 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCCEEEEeCCCCCCCH--HHHHHHHHHHHcC-CCceEEEEEeCh--hhHhcCceEEEEeeec
Q psy832 6 PSPFLLLDEIDAALDN--INIWKTIQYIRTV-PKMNVIAVSLKP--QFYFHSDILFGITLKM 62 (80)
Q Consensus 6 ~~~illlDEp~~~LD~--~~~~~i~~~l~~~-~~~~ii~ish~~--~~~~~~d~~~~i~~~~ 62 (80)
.-+++||||...+++. -....+.++|++. .+.-+|++-+++ .+...||.+-.+..-+
T Consensus 125 ~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlVTEm~~iK 186 (382)
T PRK07413 125 LYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLHSEMRPHR 186 (382)
T ss_pred CCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCeeEEeceec
Confidence 4589999999998854 3577888999888 777888888863 4567899999998865
No 495
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=93.20 E-value=0.27 Score=34.84 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=37.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF 50 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~ 50 (80)
-|+|++-||-+.|-|.....++.+|..+. .|-|++||..+++.
T Consensus 285 rPIlliEDPEarLHP~ml~~aW~ll~~lP-~QkI~TTnSgeLLS 327 (373)
T PF11398_consen 285 RPILLIEDPEARLHPIMLAIAWSLLSLLP-GQKITTTNSGELLS 327 (373)
T ss_pred cceEEEeCcccccCHHHHHHHHHHHhhCC-ccEEeecCCHHHhh
Confidence 49999999999999999999999888762 35599999987764
No 496
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.96 E-value=0.22 Score=35.82 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=34.0
Q ss_pred cCCCCEEEEeCCCC-CCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 4 YKPSPFLLLDEIDA-ALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 4 ~~~~~illlDEp~~-~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
++++++|++||... +.+......++.++..+ .+.++|++|+.
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 57789999999954 45677888999988887 67788888885
No 497
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.90 E-value=0.52 Score=26.56 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-------HHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQ-------YIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~-------~l~~~-~~~~ii~ish~ 45 (80)
.+.++++||+....+......... ..... .+..+|++++.
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 369999999999999888876653 12222 67788888883
No 498
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.87 E-value=0.26 Score=35.03 Aligned_cols=45 Identities=13% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCCCEEEEeCCC----------CCCCHHHHHHHHHHHHcC------CCceEEEEEeChhhH
Q psy832 5 KPSPFLLLDEID----------AALDNINIWKTIQYIRTV------PKMNVIAVSLKPQFY 49 (80)
Q Consensus 5 ~~~~illlDEp~----------~~LD~~~~~~i~~~l~~~------~~~~ii~ish~~~~~ 49 (80)
..|.++++||.. ++.|......+.+++..+ .+..+|++||+++.+
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 568899999955 345666666777777664 256799999976543
No 499
>PRK06526 transposase; Provisional
Probab=92.70 E-value=0.19 Score=33.53 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=32.8
Q ss_pred ccCCCCEEEEeCCCC-CCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 3 RYKPSPFLLLDEIDA-ALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 3 ~~~~~~illlDEp~~-~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+.+++++|+||... ..+......+.+++... .+..+|++|+.
T Consensus 156 ~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~ 200 (254)
T PRK06526 156 KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNK 200 (254)
T ss_pred HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 356789999999965 46788888888888766 44567777774
No 500
>PRK08181 transposase; Validated
Probab=92.65 E-value=0.2 Score=33.77 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=33.0
Q ss_pred cCCCCEEEEeCC-CCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 4 YKPSPFLLLDEI-DAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 4 ~~~~~illlDEp-~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
+..+++||+||. ....+......+++++... .+..+|++|..
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 567899999999 4457778888899999876 55677777774
Done!