Query psy832
Match_columns 80
No_of_seqs 174 out of 1595
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 00:41:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 99.7 9E-18 3.1E-22 108.8 5.8 59 4-62 161-222 (235)
2 2pcj_A ABC transporter, lipopr 99.7 4.1E-17 1.4E-21 105.0 6.5 59 4-62 156-216 (224)
3 2ff7_A Alpha-hemolysin translo 99.7 2.5E-17 8.7E-22 107.4 5.3 67 4-70 161-229 (247)
4 3tui_C Methionine import ATP-b 99.7 5.2E-17 1.8E-21 111.4 6.5 70 4-73 179-253 (366)
5 3nh6_A ATP-binding cassette SU 99.7 2.1E-17 7.1E-22 111.0 4.3 69 4-72 206-276 (306)
6 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.1E-16 1.1E-20 95.8 9.1 57 5-61 80-138 (148)
7 2ixe_A Antigen peptide transpo 99.7 5.5E-17 1.9E-21 107.1 5.8 66 4-69 172-241 (271)
8 4g1u_C Hemin import ATP-bindin 99.7 1.1E-17 3.8E-22 110.2 2.4 68 6-73 165-237 (266)
9 3gfo_A Cobalt import ATP-bindi 99.7 3.7E-17 1.3E-21 108.3 4.5 69 4-72 159-232 (275)
10 2olj_A Amino acid ABC transpor 99.7 5.6E-17 1.9E-21 106.8 5.3 69 4-72 175-247 (263)
11 1b0u_A Histidine permease; ABC 99.7 4.2E-17 1.4E-21 107.1 4.7 69 4-72 169-241 (262)
12 1ji0_A ABC transporter; ATP bi 99.7 6.8E-17 2.3E-21 104.9 5.3 65 4-68 155-223 (240)
13 3kta_B Chromosome segregation 99.7 4E-16 1.4E-20 97.5 8.4 66 4-73 84-150 (173)
14 1g6h_A High-affinity branched- 99.7 5.7E-17 2E-21 106.1 4.5 66 4-69 169-238 (257)
15 2zu0_C Probable ATP-dependent 99.7 1E-16 3.5E-21 105.5 5.7 64 4-67 180-248 (267)
16 2ghi_A Transport protein; mult 99.7 4.5E-17 1.5E-21 106.9 3.8 66 4-69 171-238 (260)
17 1vpl_A ABC transporter, ATP-bi 99.7 1.5E-16 5.1E-21 104.4 5.9 66 4-69 162-231 (256)
18 2yz2_A Putative ABC transporte 99.6 9.2E-17 3.1E-21 105.7 4.6 65 4-68 154-222 (266)
19 2onk_A Molybdate/tungstate ABC 99.6 8E-17 2.7E-21 104.8 3.7 68 4-71 142-214 (240)
20 1mv5_A LMRA, multidrug resista 99.6 3.3E-17 1.1E-21 106.4 1.7 67 4-70 155-223 (243)
21 2cbz_A Multidrug resistance-as 99.6 1E-16 3.5E-21 103.9 3.7 66 4-69 143-213 (237)
22 2pze_A Cystic fibrosis transme 99.6 1.6E-16 5.6E-21 102.5 4.5 67 4-70 146-215 (229)
23 2d2e_A SUFC protein; ABC-ATPas 99.6 2.2E-16 7.6E-21 103.0 5.1 59 4-62 159-221 (250)
24 3qf4_A ABC transporter, ATP-bi 99.6 2.4E-16 8.1E-21 112.9 5.2 69 4-72 495-565 (587)
25 3b5x_A Lipid A export ATP-bind 99.6 3.6E-16 1.2E-20 111.6 6.2 69 4-72 496-566 (582)
26 2nq2_C Hypothetical ABC transp 99.6 7.8E-16 2.7E-20 100.7 6.8 59 4-62 144-206 (253)
27 3qf4_B Uncharacterized ABC tra 99.6 3E-16 1E-20 112.4 5.1 70 4-73 507-578 (598)
28 4a82_A Cystic fibrosis transme 99.6 2.7E-16 9.2E-21 112.3 4.3 70 4-73 493-564 (578)
29 2yl4_A ATP-binding cassette SU 99.6 5.3E-16 1.8E-20 111.0 5.6 70 4-73 499-570 (595)
30 2ihy_A ABC transporter, ATP-bi 99.6 2.5E-16 8.4E-21 104.4 3.2 66 4-69 177-248 (279)
31 3b60_A Lipid A export ATP-bind 99.6 3.4E-16 1.2E-20 111.7 4.0 68 4-71 496-565 (582)
32 3fvq_A Fe(3+) IONS import ATP- 99.6 7.4E-16 2.5E-20 105.5 5.3 69 4-72 154-227 (359)
33 2qi9_C Vitamin B12 import ATP- 99.6 3E-16 1E-20 102.6 3.0 54 9-62 154-210 (249)
34 2pjz_A Hypothetical protein ST 99.6 9E-16 3.1E-20 101.1 5.0 64 4-68 144-210 (263)
35 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 3.9E-15 1.3E-19 101.5 8.0 58 5-62 302-361 (365)
36 3d31_A Sulfate/molybdate ABC t 99.6 1.6E-15 5.5E-20 103.4 6.0 68 4-71 143-215 (348)
37 2bbs_A Cystic fibrosis transme 99.6 1.2E-15 4.1E-20 101.7 4.7 66 4-69 175-243 (290)
38 2yyz_A Sugar ABC transporter, 99.6 1.4E-15 4.8E-20 104.1 5.0 68 4-71 149-221 (359)
39 1z47_A CYSA, putative ABC-tran 99.6 1.2E-15 4.1E-20 104.3 4.5 68 4-71 161-233 (355)
40 3gd7_A Fusion complex of cysti 99.6 6.2E-16 2.1E-20 106.7 3.1 68 4-71 171-240 (390)
41 4f4c_A Multidrug resistance pr 99.6 9.4E-16 3.2E-20 117.4 4.1 70 4-73 1233-1304(1321)
42 3rlf_A Maltose/maltodextrin im 99.6 8.3E-16 2.8E-20 105.9 3.4 68 4-71 149-221 (381)
43 1oxx_K GLCV, glucose, ABC tran 99.6 1.2E-15 4.2E-20 104.0 4.1 68 4-71 156-228 (353)
44 1g29_1 MALK, maltose transport 99.6 1.6E-15 5.5E-20 104.1 4.6 68 4-71 155-227 (372)
45 3qkt_A DNA double-strand break 99.6 1.8E-14 6.2E-19 97.1 9.6 58 4-61 270-329 (339)
46 2it1_A 362AA long hypothetical 99.6 1.5E-15 5.2E-20 103.9 4.3 68 4-71 149-221 (362)
47 1v43_A Sugar-binding transport 99.6 2.2E-15 7.5E-20 103.5 4.9 68 4-71 157-229 (372)
48 3ux8_A Excinuclease ABC, A sub 99.6 2.8E-15 9.7E-20 108.4 4.9 66 6-71 564-638 (670)
49 4aby_A DNA repair protein RECN 99.5 1.1E-14 3.6E-19 99.5 6.8 57 5-61 312-371 (415)
50 3ux8_A Excinuclease ABC, A sub 99.5 3.7E-15 1.3E-19 107.7 4.1 54 5-58 219-276 (670)
51 1w1w_A Structural maintenance 99.5 4E-14 1.4E-18 97.7 8.6 68 4-73 353-422 (430)
52 3j16_B RLI1P; ribosome recycli 99.5 1.1E-14 3.7E-19 105.0 5.7 71 4-74 483-560 (608)
53 1e69_A Chromosome segregation 99.5 8.8E-14 3E-18 93.1 9.0 57 4-60 239-296 (322)
54 3g5u_A MCG1178, multidrug resi 99.5 6.4E-15 2.2E-19 112.7 3.7 70 4-73 1187-1258(1284)
55 3pih_A Uvrabc system protein A 99.5 1.5E-14 5.1E-19 108.1 5.4 54 6-59 826-881 (916)
56 3ozx_A RNAse L inhibitor; ATP 99.5 4E-14 1.4E-18 100.8 7.3 58 4-61 401-462 (538)
57 1yqt_A RNAse L inhibitor; ATP- 99.5 4.1E-14 1.4E-18 100.7 7.3 58 4-61 174-234 (538)
58 4f4c_A Multidrug resistance pr 99.5 1E-14 3.5E-19 111.8 3.6 67 4-70 570-638 (1321)
59 3g5u_A MCG1178, multidrug resi 99.5 1.4E-14 4.9E-19 110.8 4.1 68 4-71 542-611 (1284)
60 1yqt_A RNAse L inhibitor; ATP- 99.5 4.2E-14 1.4E-18 100.6 6.1 58 4-61 417-478 (538)
61 3ozx_A RNAse L inhibitor; ATP 99.5 7.9E-14 2.7E-18 99.3 7.3 58 4-61 154-213 (538)
62 3auy_A DNA double-strand break 99.5 2.6E-13 8.9E-18 92.3 9.5 57 5-61 303-361 (371)
63 3bk7_A ABC transporter ATP-bin 99.5 7.1E-14 2.4E-18 100.7 6.8 57 4-60 487-547 (607)
64 3bk7_A ABC transporter ATP-bin 99.5 7.7E-14 2.6E-18 100.5 7.0 58 4-61 244-304 (607)
65 3j16_B RLI1P; ribosome recycli 99.5 1.3E-13 4.4E-18 99.4 7.6 58 4-61 237-297 (608)
66 1sgw_A Putative ABC transporte 99.5 9.8E-15 3.3E-19 93.7 1.3 53 4-56 149-204 (214)
67 4ad8_A DNA repair protein RECN 99.4 1E-13 3.5E-18 97.8 5.6 57 5-61 414-473 (517)
68 2vf7_A UVRA2, excinuclease ABC 99.4 8.2E-14 2.8E-18 103.4 5.0 54 6-59 751-806 (842)
69 3pih_A Uvrabc system protein A 99.4 8.7E-14 3E-18 104.0 4.6 54 7-60 485-540 (916)
70 2r6f_A Excinuclease ABC subuni 99.4 1.1E-13 3.9E-18 103.8 5.0 54 6-59 866-921 (972)
71 2ygr_A Uvrabc system protein A 99.4 1.7E-13 5.9E-18 103.0 4.9 54 6-59 884-939 (993)
72 2ygr_A Uvrabc system protein A 99.4 4.2E-13 1.4E-17 100.9 5.6 53 7-59 542-596 (993)
73 2r6f_A Excinuclease ABC subuni 99.4 1.4E-12 4.9E-17 97.9 7.8 54 7-60 525-580 (972)
74 2iw3_A Elongation factor 3A; a 99.4 1.4E-12 4.8E-17 98.1 7.2 58 4-62 564-622 (986)
75 2iw3_A Elongation factor 3A; a 99.3 1.8E-12 6.1E-17 97.5 6.4 58 4-62 917-975 (986)
76 2vf7_A UVRA2, excinuclease ABC 99.3 1.2E-12 4E-17 97.3 5.2 53 8-60 401-455 (842)
77 4gp7_A Metallophosphoesterase; 99.2 2.7E-12 9.4E-17 79.0 0.2 52 4-55 99-168 (171)
78 2o5v_A DNA replication and rep 99.1 5.7E-11 2E-15 81.2 5.3 59 5-67 291-350 (359)
79 3thx_A DNA mismatch repair pro 98.9 7.7E-10 2.6E-14 83.1 5.1 59 4-62 739-801 (934)
80 2ehv_A Hypothetical protein PH 98.9 6.5E-10 2.2E-14 70.5 3.8 57 5-61 134-208 (251)
81 3b85_A Phosphate starvation-in 98.9 1E-09 3.5E-14 69.9 3.5 43 3-50 119-162 (208)
82 2w0m_A SSO2452; RECA, SSPF, un 98.8 6.5E-09 2.2E-13 65.0 5.4 56 6-61 121-192 (235)
83 3thx_B DNA mismatch repair pro 98.8 5E-09 1.7E-13 78.6 4.9 50 4-53 750-803 (918)
84 1cr0_A DNA primase/helicase; R 98.8 1.4E-08 4.6E-13 66.6 5.9 59 4-62 145-236 (296)
85 1ye8_A Protein THEP1, hypothet 98.8 7.7E-09 2.6E-13 64.2 4.3 50 4-54 97-152 (178)
86 1znw_A Guanylate kinase, GMP k 98.7 2E-10 6.7E-15 72.2 -5.4 55 5-59 140-202 (207)
87 1tf7_A KAIC; homohexamer, hexa 98.6 1.3E-07 4.3E-12 66.8 7.4 57 5-61 137-210 (525)
88 1tf7_A KAIC; homohexamer, hexa 98.6 2.3E-08 7.9E-13 70.6 3.6 58 4-62 369-444 (525)
89 1wb9_A DNA mismatch repair pro 98.6 1.3E-08 4.6E-13 75.4 2.3 58 4-61 684-745 (800)
90 2o8b_B DNA mismatch repair pro 98.6 7.6E-08 2.6E-12 72.9 5.9 55 4-58 866-925 (1022)
91 4a74_A DNA repair and recombin 98.6 4.1E-08 1.4E-12 61.4 3.5 58 4-61 123-200 (231)
92 2npi_A Protein CLP1; CLP1-PCF1 98.6 1.4E-08 4.9E-13 71.2 1.5 62 4-67 253-332 (460)
93 2cvh_A DNA repair and recombin 98.4 5.3E-07 1.8E-11 56.0 5.8 56 6-61 105-185 (220)
94 1ewq_A DNA mismatch repair pro 98.3 3.1E-07 1.1E-11 67.9 3.3 48 4-52 653-704 (765)
95 3ec2_A DNA replication protein 98.3 1.3E-06 4.4E-11 53.3 5.2 43 4-46 98-143 (180)
96 1sxj_E Activator 1 40 kDa subu 98.2 2E-06 6.9E-11 57.0 5.4 43 4-47 132-175 (354)
97 2pt7_A CAG-ALFA; ATPase, prote 98.2 1.6E-07 5.3E-12 63.3 -0.3 51 4-61 238-290 (330)
98 1nlf_A Regulatory protein REPA 98.2 9.8E-07 3.4E-11 57.4 2.9 45 4-48 131-183 (279)
99 2eyu_A Twitching motility prot 98.1 6.5E-07 2.2E-11 58.5 1.8 49 5-58 97-145 (261)
100 3jvv_A Twitching mobility prot 98.1 9.6E-07 3.3E-11 60.2 1.7 52 4-60 194-245 (356)
101 1n0w_A DNA repair protein RAD5 98.0 8.7E-06 3E-10 51.1 4.5 57 5-61 118-209 (243)
102 2kjq_A DNAA-related protein; s 97.9 7.9E-06 2.7E-10 49.1 3.5 40 5-45 82-124 (149)
103 1pzn_A RAD51, DNA repair and r 97.9 8E-06 2.7E-10 55.2 3.0 42 5-46 230-286 (349)
104 3szr_A Interferon-induced GTP- 97.8 3E-05 1E-09 55.9 5.7 43 5-47 145-197 (608)
105 1tq4_A IIGP1, interferon-induc 97.6 6.6E-07 2.3E-11 62.1 -5.1 52 5-56 183-248 (413)
106 2i3b_A HCR-ntpase, human cance 97.6 5.9E-05 2E-09 47.1 3.5 41 4-46 103-149 (189)
107 3lda_A DNA repair protein RAD5 97.5 0.00012 4.1E-09 50.6 4.9 57 5-61 272-363 (400)
108 3b9q_A Chloroplast SRP recepto 97.4 0.00016 5.6E-09 48.0 4.6 55 4-62 217-283 (302)
109 2dr3_A UPF0273 protein PH0284; 97.4 0.00045 1.6E-08 43.2 6.1 56 6-61 128-197 (247)
110 2og2_A Putative signal recogni 97.2 0.00045 1.5E-08 47.2 4.6 54 4-61 274-339 (359)
111 2ewv_A Twitching motility prot 96.9 0.00058 2E-08 46.5 2.8 46 5-55 208-253 (372)
112 2bbw_A Adenylate kinase 4, AK4 96.7 0.00019 6.4E-09 45.7 -0.7 31 4-34 162-196 (246)
113 2dpy_A FLII, flagellum-specifi 96.5 0.00015 5E-09 50.6 -2.4 46 16-62 276-332 (438)
114 1s96_A Guanylate kinase, GMP k 96.4 0.0046 1.6E-07 39.2 4.3 39 5-50 106-144 (219)
115 2obl_A ESCN; ATPase, hydrolase 96.4 0.00011 3.8E-09 49.8 -3.4 46 16-62 189-243 (347)
116 2qnr_A Septin-2, protein NEDD5 96.3 0.0074 2.5E-07 39.8 5.2 37 9-46 130-167 (301)
117 1lw7_A Transcriptional regulat 96.3 0.00061 2.1E-08 45.9 -0.3 52 5-56 276-339 (365)
118 3asz_A Uridine kinase; cytidin 96.1 2.9E-05 9.9E-10 48.1 -7.0 40 6-45 111-160 (211)
119 2r6a_A DNAB helicase, replicat 96.0 0.018 6.2E-07 39.8 6.1 58 5-62 312-400 (454)
120 1g5t_A COB(I)alamin adenosyltr 95.9 0.0061 2.1E-07 38.5 3.2 58 5-62 119-181 (196)
121 3sop_A Neuronal-specific septi 95.9 0.01 3.5E-07 38.7 4.3 39 6-47 113-151 (270)
122 2zr9_A Protein RECA, recombina 95.9 0.027 9.4E-07 38.0 6.5 58 5-62 138-231 (349)
123 2v9p_A Replication protein E1; 95.9 0.00014 4.7E-09 48.7 -4.9 47 4-67 213-260 (305)
124 1z6g_A Guanylate kinase; struc 95.8 0.00018 6.3E-09 45.3 -4.2 52 5-56 144-205 (218)
125 2qag_C Septin-7; cell cycle, c 95.8 0.014 4.8E-07 40.5 5.0 41 4-47 134-178 (418)
126 2z4s_A Chromosomal replication 95.6 0.015 5.2E-07 40.2 4.2 41 6-46 194-237 (440)
127 1pui_A ENGB, probable GTP-bind 95.2 0.002 6.9E-08 39.3 -0.9 30 5-34 167-196 (210)
128 1fnn_A CDC6P, cell division co 95.2 0.022 7.5E-07 37.6 4.0 43 5-48 124-171 (389)
129 1njg_A DNA polymerase III subu 95.1 0.062 2.1E-06 32.5 5.5 41 6-47 126-167 (250)
130 3euj_A Chromosome partition pr 94.8 0.05 1.7E-06 38.5 5.0 53 6-61 414-466 (483)
131 2jeo_A Uridine-cytidine kinase 94.4 0.061 2.1E-06 33.9 4.4 35 4-46 131-165 (245)
132 1ls1_A Signal recognition part 93.9 0.14 4.6E-06 33.7 5.4 40 5-44 179-220 (295)
133 3aez_A Pantothenate kinase; tr 92.2 0.082 2.8E-06 35.1 2.4 39 4-48 192-230 (312)
134 2ce7_A Cell division protein F 92.1 0.14 4.8E-06 36.1 3.6 44 5-48 107-166 (476)
135 2xau_A PRE-mRNA-splicing facto 92.0 0.099 3.4E-06 38.7 2.9 46 4-49 206-255 (773)
136 1sxj_D Activator 1 41 kDa subu 92.0 0.32 1.1E-05 31.6 5.1 41 6-47 133-174 (353)
137 2qby_A CDC6 homolog 1, cell di 91.6 0.11 3.8E-06 33.9 2.6 43 6-48 128-175 (386)
138 1l8q_A Chromosomal replication 91.5 0.26 8.8E-06 32.1 4.2 41 5-45 97-140 (324)
139 4ag6_A VIRB4 ATPase, type IV s 90.3 0.43 1.5E-05 32.0 4.5 44 5-48 261-309 (392)
140 3llm_A ATP-dependent RNA helic 90.1 0.43 1.5E-05 29.7 4.2 41 4-44 174-216 (235)
141 2ius_A DNA translocase FTSK; n 90.1 0.17 5.8E-06 36.1 2.5 41 6-47 296-343 (512)
142 1jr3_A DNA polymerase III subu 89.6 0.87 3E-05 29.7 5.5 41 6-47 119-160 (373)
143 2chg_A Replication factor C sm 89.3 1 3.4E-05 26.7 5.3 42 5-47 101-143 (226)
144 1lvg_A Guanylate kinase, GMP k 89.0 0.0043 1.5E-07 38.3 -5.7 48 5-58 123-171 (198)
145 3syl_A Protein CBBX; photosynt 88.7 2.1 7.3E-05 27.2 6.8 40 6-45 130-178 (309)
146 3n70_A Transport activator; si 88.5 1.1 3.7E-05 25.8 4.8 39 6-45 76-115 (145)
147 1odf_A YGR205W, hypothetical 3 88.0 0.23 7.7E-06 32.6 1.8 17 6-22 152-168 (290)
148 2qag_B Septin-6, protein NEDD5 87.8 0.19 6.6E-06 35.0 1.4 41 5-45 175-218 (427)
149 1a5t_A Delta prime, HOLB; zinc 87.6 0.92 3.1E-05 29.9 4.6 42 5-47 107-149 (334)
150 2e87_A Hypothetical protein PH 87.3 0.78 2.7E-05 30.5 4.1 42 5-46 247-292 (357)
151 2b8t_A Thymidine kinase; deoxy 87.0 1.6 5.6E-05 27.6 5.3 53 6-61 89-152 (223)
152 3bos_A Putative DNA replicatio 85.8 0.85 2.9E-05 27.6 3.5 42 4-45 102-147 (242)
153 2bdt_A BH3686; alpha-beta prot 85.4 0.053 1.8E-06 32.6 -2.2 49 17-68 126-179 (189)
154 1rj9_A FTSY, signal recognitio 84.9 0.15 5.2E-06 33.7 -0.3 36 5-47 219-259 (304)
155 3b9p_A CG5977-PA, isoform A; A 84.9 2 6.9E-05 27.3 5.0 54 5-58 112-186 (297)
156 1vec_A ATP-dependent RNA helic 84.0 0.8 2.7E-05 27.4 2.7 41 4-44 144-185 (206)
157 2orv_A Thymidine kinase; TP4A 84.0 3.9 0.00013 26.3 6.0 53 5-61 89-152 (234)
158 3u61_B DNA polymerase accessor 83.9 1.2 4E-05 28.8 3.6 42 6-47 105-147 (324)
159 1iqp_A RFCS; clamp loader, ext 83.9 2.8 9.5E-05 26.6 5.4 42 5-47 109-151 (327)
160 2px0_A Flagellar biosynthesis 83.5 0.8 2.7E-05 30.0 2.7 49 4-54 180-235 (296)
161 3co5_A Putative two-component 83.2 3.7 0.00013 23.4 5.3 39 6-45 75-115 (143)
162 2gno_A DNA polymerase III, gam 83.2 1.7 5.8E-05 28.6 4.2 41 6-47 82-123 (305)
163 2w58_A DNAI, primosome compone 82.5 0.49 1.7E-05 28.5 1.3 41 5-45 114-158 (202)
164 1jr3_D DNA polymerase III, del 82.4 2.7 9.1E-05 27.5 4.9 41 5-45 75-116 (343)
165 1t6n_A Probable ATP-dependent 81.9 1.6 5.5E-05 26.4 3.5 41 4-44 156-198 (220)
166 3h4m_A Proteasome-activating n 81.7 0.71 2.4E-05 29.2 1.9 44 5-48 109-168 (285)
167 1oix_A RAS-related protein RAB 81.0 0.81 2.8E-05 27.3 1.9 27 5-33 162-188 (191)
168 2orw_A Thymidine kinase; TMTK, 80.7 3.9 0.00013 24.7 4.9 53 6-61 76-139 (184)
169 3pxi_A Negative regulator of g 80.7 6.9 0.00024 28.6 7.0 39 5-44 578-628 (758)
170 1sxj_B Activator 1 37 kDa subu 80.5 2.6 8.8E-05 26.7 4.3 41 6-47 107-148 (323)
171 2gxq_A Heat resistant RNA depe 79.3 0.6 2.1E-05 28.0 0.9 41 4-44 142-183 (207)
172 3cf0_A Transitional endoplasmi 79.2 4.7 0.00016 25.9 5.3 42 6-47 108-165 (301)
173 3bor_A Human initiation factor 78.2 0.6 2.1E-05 29.0 0.7 41 4-44 171-212 (237)
174 3iuy_A Probable ATP-dependent 77.4 0.68 2.3E-05 28.4 0.7 41 4-44 165-206 (228)
175 2chq_A Replication factor C sm 76.6 1.6 5.4E-05 27.7 2.3 42 5-47 101-143 (319)
176 3k1j_A LON protease, ATP-depen 76.5 5.7 0.00019 28.4 5.4 28 6-34 201-228 (604)
177 2qgz_A Helicase loader, putati 75.6 0.56 1.9E-05 30.8 -0.0 41 5-45 213-257 (308)
178 2gza_A Type IV secretion syste 75.5 1.2 4E-05 29.9 1.6 49 5-60 251-301 (361)
179 1sxj_C Activator 1 40 kDa subu 75.5 5.3 0.00018 26.0 4.7 41 6-47 110-151 (340)
180 1qde_A EIF4A, translation init 75.1 1 3.4E-05 27.4 1.1 41 4-44 153-194 (224)
181 1v5w_A DMC1, meiotic recombina 74.6 1.7 5.7E-05 28.9 2.1 41 5-45 218-273 (343)
182 1nij_A Hypothetical protein YJ 74.3 2.2 7.6E-05 28.0 2.6 38 6-46 151-189 (318)
183 4fcw_A Chaperone protein CLPB; 73.9 11 0.00036 23.9 5.8 27 7-34 120-146 (311)
184 3fe2_A Probable ATP-dependent 73.2 0.84 2.9E-05 28.3 0.4 41 4-44 174-215 (242)
185 2pl3_A Probable ATP-dependent 73.0 1.2 4E-05 27.4 1.0 40 5-44 170-210 (236)
186 1q0u_A Bstdead; DEAD protein, 73.0 0.84 2.9E-05 27.8 0.3 40 5-44 149-189 (219)
187 2j0s_A ATP-dependent RNA helic 72.9 2.4 8.3E-05 27.9 2.6 41 4-44 177-218 (410)
188 2f9l_A RAB11B, member RAS onco 71.9 2 6.9E-05 25.5 1.9 28 5-34 138-165 (199)
189 4b4t_L 26S protease subunit RP 70.8 7.2 0.00025 27.1 4.7 45 5-49 273-333 (437)
190 1u94_A RECA protein, recombina 70.7 6.3 0.00022 26.5 4.3 41 5-45 140-199 (356)
191 3ber_A Probable ATP-dependent 70.6 1.4 4.8E-05 27.7 1.0 41 4-44 184-225 (249)
192 4b4t_J 26S protease regulatory 69.7 5 0.00017 27.8 3.6 55 5-59 240-317 (405)
193 2bjv_A PSP operon transcriptio 69.2 12 0.00041 23.2 5.2 39 6-45 100-150 (265)
194 2oxc_A Probable ATP-dependent 67.9 1.5 5.2E-05 26.9 0.7 40 5-44 165-206 (230)
195 2z43_A DNA repair and recombin 67.8 1.8 6.3E-05 28.4 1.1 41 5-45 202-257 (324)
196 3hr8_A Protein RECA; alpha and 67.3 17 0.00058 24.5 5.8 56 5-60 138-229 (356)
197 1s2m_A Putative ATP-dependent 67.1 7.1 0.00024 25.5 3.9 41 4-44 161-202 (400)
198 3t15_A Ribulose bisphosphate c 67.0 6 0.00021 25.5 3.4 42 5-46 98-165 (293)
199 2qz4_A Paraplegin; AAA+, SPG7, 66.2 8.4 0.00029 23.7 3.9 14 6-19 98-111 (262)
200 3fmo_B ATP-dependent RNA helic 66.1 1.6 5.4E-05 28.3 0.5 41 4-44 233-275 (300)
201 2q6t_A DNAB replication FORK h 65.9 17 0.00057 24.8 5.7 58 5-62 309-399 (444)
202 1xx6_A Thymidine kinase; NESG, 65.6 20 0.00069 21.8 5.7 53 6-61 81-144 (191)
203 2db3_A ATP-dependent RNA helic 65.5 4.7 0.00016 27.3 2.8 41 4-44 201-244 (434)
204 3e70_C DPA, signal recognition 65.3 0.71 2.4E-05 30.8 -1.3 33 6-45 243-278 (328)
205 3hu3_A Transitional endoplasmi 65.1 4.6 0.00016 28.3 2.8 42 6-47 297-351 (489)
206 3dkp_A Probable ATP-dependent 65.0 2.6 8.9E-05 26.0 1.4 41 4-44 173-218 (245)
207 3eie_A Vacuolar protein sortin 64.6 18 0.00062 23.3 5.4 54 5-58 109-181 (322)
208 3ly5_A ATP-dependent RNA helic 63.5 1.7 6E-05 27.4 0.3 41 4-44 199-240 (262)
209 2qp9_X Vacuolar protein sortin 63.4 16 0.00056 24.1 5.1 54 5-58 142-214 (355)
210 3uk6_A RUVB-like 2; hexameric 63.3 12 0.00042 24.2 4.5 37 7-44 190-226 (368)
211 1xti_A Probable ATP-dependent 62.6 10 0.00035 24.5 4.0 41 4-44 150-192 (391)
212 2qxy_A Response regulator; reg 62.3 17 0.00057 19.7 4.9 37 5-45 47-84 (142)
213 1hv8_A Putative ATP-dependent 62.2 3.6 0.00012 26.3 1.7 41 4-44 145-186 (367)
214 1hqc_A RUVB; extended AAA-ATPa 60.6 21 0.00073 22.5 5.2 30 4-34 88-117 (324)
215 2dy1_A Elongation factor G; tr 59.6 22 0.00075 25.8 5.5 41 5-48 98-138 (665)
216 2r2a_A Uncharacterized protein 59.5 2.6 9E-05 26.0 0.6 42 7-48 88-135 (199)
217 1wp9_A ATP-dependent RNA helic 59.4 12 0.00041 24.6 3.9 41 4-44 123-164 (494)
218 1ojl_A Transcriptional regulat 59.1 33 0.0011 22.1 6.2 38 7-45 97-146 (304)
219 4b4t_I 26S protease regulatory 58.8 11 0.00037 26.5 3.6 45 5-49 274-334 (437)
220 2j9r_A Thymidine kinase; TK1, 58.1 32 0.0011 21.6 5.7 53 6-61 101-164 (214)
221 3cu5_A Two component transcrip 57.9 21 0.00073 19.5 4.7 39 5-46 48-87 (141)
222 3te6_A Regulatory protein SIR3 57.5 19 0.00066 23.8 4.6 39 5-46 131-173 (318)
223 3lua_A Response regulator rece 57.4 21 0.00072 19.3 5.2 39 5-45 49-90 (140)
224 2rjn_A Response regulator rece 57.2 22 0.00077 19.6 5.4 39 5-46 50-89 (154)
225 3kl4_A SRP54, signal recogniti 56.6 21 0.00073 24.7 4.9 39 5-43 178-220 (433)
226 3iog_A Beta-lactamase; hydrola 55.7 19 0.00064 21.5 4.1 33 9-44 34-68 (227)
227 1jbk_A CLPB protein; beta barr 55.5 8.6 0.00029 21.9 2.4 43 5-47 114-162 (195)
228 1jql_B DNA polymerase III, del 55.5 27 0.00091 19.9 4.6 40 4-44 74-114 (140)
229 3eiq_A Eukaryotic initiation f 55.1 3.2 0.00011 27.2 0.5 40 5-44 182-222 (414)
230 2c9o_A RUVB-like 1; hexameric 54.8 16 0.00054 25.0 4.0 35 7-43 296-331 (456)
231 3q6v_A Beta-lactamase; metallo 54.7 14 0.00047 22.2 3.4 34 8-44 36-71 (233)
232 2v1u_A Cell division control p 54.4 5.2 0.00018 25.9 1.5 41 6-46 130-177 (387)
233 1wrb_A DJVLGB; RNA helicase, D 54.1 4.3 0.00015 25.1 1.0 41 4-44 172-217 (253)
234 1tmy_A CHEY protein, TMY; chem 54.0 22 0.00076 18.5 4.1 37 6-45 47-84 (120)
235 1dbw_A Transcriptional regulat 53.8 23 0.00079 18.7 5.2 38 5-45 46-84 (126)
236 4a1f_A DNAB helicase, replicat 53.2 28 0.00097 23.2 4.9 12 6-17 127-138 (338)
237 1tue_A Replication protein E1; 52.9 11 0.00036 23.9 2.6 15 4-18 101-115 (212)
238 1xp8_A RECA protein, recombina 52.8 37 0.0013 22.8 5.5 57 5-61 151-243 (366)
239 3kto_A Response regulator rece 52.2 20 0.0007 19.3 3.6 38 5-45 49-89 (136)
240 3cz5_A Two-component response 52.0 28 0.00096 19.1 4.6 38 5-45 50-88 (153)
241 3f6c_A Positive transcription 51.8 26 0.00088 18.7 5.8 38 5-45 45-83 (134)
242 3eod_A Protein HNR; response r 51.0 26 0.00089 18.6 3.9 38 5-45 50-88 (130)
243 1ypw_A Transitional endoplasmi 50.9 28 0.00096 25.9 5.0 43 6-48 297-352 (806)
244 3d8b_A Fidgetin-like protein 1 50.9 18 0.0006 23.9 3.6 13 5-17 175-187 (357)
245 1xwi_A SKD1 protein; VPS4B, AA 50.7 20 0.00068 23.3 3.8 54 5-58 104-176 (322)
246 3b2n_A Uncharacterized protein 50.6 28 0.00095 18.7 5.2 37 6-45 49-86 (133)
247 3o8b_A HCV NS3 protease/helica 50.4 43 0.0015 24.6 5.8 30 4-34 316-345 (666)
248 1fuu_A Yeast initiation factor 50.3 4.6 0.00016 26.2 0.6 40 5-44 161-201 (394)
249 1qkk_A DCTD, C4-dicarboxylate 49.8 31 0.0011 19.0 5.1 38 5-45 46-84 (155)
250 1srr_A SPO0F, sporulation resp 49.7 27 0.00093 18.3 5.1 37 6-45 47-84 (124)
251 3eul_A Possible nitrate/nitrit 49.4 31 0.0011 18.9 5.6 38 5-45 60-98 (152)
252 1d2n_A N-ethylmaleimide-sensit 49.1 21 0.00071 22.2 3.6 13 5-17 123-135 (272)
253 3a10_A Response regulator; pho 49.0 27 0.00092 18.0 4.9 38 5-45 44-82 (116)
254 2r8r_A Sensor protein; KDPD, P 47.7 6.6 0.00022 25.1 1.1 40 5-44 83-125 (228)
255 2whx_A Serine protease/ntpase/ 47.5 42 0.0014 24.1 5.3 40 4-44 275-316 (618)
256 1e9r_A Conjugal transfer prote 47.2 9.2 0.00032 25.8 1.8 40 5-47 278-319 (437)
257 4eyb_A Beta-lactamase NDM-1; m 47.2 18 0.00063 22.7 3.1 28 17-44 91-120 (270)
258 1mvo_A PHOP response regulator 47.1 32 0.0011 18.3 5.5 37 6-45 47-84 (136)
259 3fmp_B ATP-dependent RNA helic 46.7 8 0.00027 26.2 1.5 40 5-44 234-275 (479)
260 3pey_A ATP-dependent RNA helic 46.7 11 0.00037 24.3 2.0 41 4-44 143-185 (395)
261 4e7p_A Response regulator; DNA 46.6 35 0.0012 18.7 5.5 38 5-45 65-103 (150)
262 2rdm_A Response regulator rece 46.6 32 0.0011 18.2 4.9 37 6-45 50-88 (132)
263 2qr3_A Two-component system re 46.5 33 0.0011 18.3 4.4 38 5-45 46-89 (140)
264 3heb_A Response regulator rece 46.1 36 0.0012 18.7 4.4 38 5-45 58-98 (152)
265 2zay_A Response regulator rece 45.9 35 0.0012 18.5 5.5 37 6-45 52-91 (147)
266 4dad_A Putative pilus assembly 45.9 35 0.0012 18.5 5.3 38 5-45 66-104 (146)
267 3hdg_A Uncharacterized protein 45.8 34 0.0012 18.3 4.4 38 5-45 50-88 (137)
268 3jte_A Response regulator rece 45.7 35 0.0012 18.4 5.1 38 5-45 48-86 (143)
269 2i1q_A DNA repair and recombin 45.5 11 0.00036 24.4 1.9 57 5-61 203-291 (322)
270 2zan_A Vacuolar protein sortin 45.5 20 0.00069 24.5 3.3 54 5-58 226-298 (444)
271 1jcn_A Inosine monophosphate d 45.1 0.6 2.1E-05 32.8 -4.5 36 8-48 34-72 (514)
272 3fht_A ATP-dependent RNA helic 44.9 9.3 0.00032 24.9 1.5 40 5-44 167-208 (412)
273 1r6b_X CLPA protein; AAA+, N-t 44.3 82 0.0028 22.8 6.5 27 6-33 557-583 (758)
274 3vfd_A Spastin; ATPase, microt 44.2 31 0.0011 22.9 4.0 13 6-18 207-219 (389)
275 3hv2_A Response regulator/HD d 44.1 39 0.0013 18.5 4.7 38 5-45 57-95 (153)
276 2b4a_A BH3024; flavodoxin-like 44.1 37 0.0013 18.2 5.5 38 5-45 59-98 (138)
277 3crn_A Response regulator rece 43.9 37 0.0013 18.1 4.5 38 5-45 46-84 (132)
278 1w36_D RECD, exodeoxyribonucle 43.9 33 0.0011 24.5 4.3 35 6-44 262-297 (608)
279 4hbz_A Putative phosphohistidi 43.6 31 0.001 20.8 3.6 25 24-48 98-124 (186)
280 2jk1_A HUPR, hydrogenase trans 43.1 39 0.0013 18.2 4.4 38 5-45 43-81 (139)
281 3pfi_A Holliday junction ATP-d 42.5 64 0.0022 20.5 6.1 30 4-34 104-133 (338)
282 3grc_A Sensor protein, kinase; 41.9 40 0.0014 18.0 5.0 39 5-46 49-90 (140)
283 2pl1_A Transcriptional regulat 41.5 37 0.0013 17.5 5.2 38 5-45 43-81 (121)
284 4b4t_H 26S protease regulatory 41.3 24 0.00083 24.9 3.2 55 5-59 301-378 (467)
285 3hzh_A Chemotaxis response reg 41.2 45 0.0016 18.5 4.2 37 6-45 83-120 (157)
286 1w4r_A Thymidine kinase; type 40.8 60 0.002 20.1 4.7 53 5-61 90-153 (195)
287 3fho_A ATP-dependent RNA helic 40.6 20 0.00069 24.7 2.7 41 4-44 257-299 (508)
288 1qvr_A CLPB protein; coiled co 40.4 33 0.0011 25.5 4.0 27 6-33 660-686 (854)
289 3eqz_A Response regulator; str 40.2 41 0.0014 17.7 4.7 37 7-46 47-84 (135)
290 3l9o_A ATP-dependent RNA helic 40.1 50 0.0017 25.6 5.0 39 6-44 290-329 (1108)
291 3cfy_A Putative LUXO repressor 40.0 45 0.0015 18.0 5.1 37 6-45 48-85 (137)
292 1kgs_A DRRD, DNA binding respo 39.8 57 0.0019 19.1 5.5 38 5-45 45-83 (225)
293 1ni3_A YCHF GTPase, YCHF GTP-b 39.7 0.8 2.7E-05 31.5 -4.4 55 5-61 138-199 (392)
294 3kht_A Response regulator; PSI 39.2 46 0.0016 17.9 4.6 38 5-45 50-90 (144)
295 1a04_A Nitrate/nitrite respons 38.4 60 0.002 19.0 5.7 37 6-45 51-88 (215)
296 3szr_A Interferon-induced GTP- 37.9 13 0.00046 26.6 1.5 40 4-44 181-223 (608)
297 3cg4_A Response regulator rece 37.7 48 0.0016 17.7 5.3 38 5-45 50-90 (142)
298 4b4t_K 26S protease regulatory 37.3 35 0.0012 23.6 3.5 43 5-47 264-322 (428)
299 2vx2_A Enoyl-COA hydratase dom 37.2 82 0.0028 20.3 5.1 37 9-45 45-86 (287)
300 3cnb_A DNA-binding response re 37.0 49 0.0017 17.6 5.9 38 5-45 53-93 (143)
301 1yio_A Response regulatory pro 36.7 62 0.0021 18.7 5.2 38 5-45 47-85 (208)
302 1ys7_A Transcriptional regulat 36.6 66 0.0022 19.0 5.5 38 5-45 50-88 (233)
303 3f2i_A ALR0221 protein; alpha- 36.5 66 0.0023 19.0 5.1 38 8-48 73-114 (172)
304 3lxx_A GTPase IMAP family memb 36.4 53 0.0018 19.9 4.0 40 5-44 111-154 (239)
305 2qsj_A DNA-binding response re 36.0 30 0.001 19.0 2.6 38 5-45 49-87 (154)
306 2ftc_D Mitochondrial ribosomal 35.8 40 0.0014 20.6 3.2 39 4-44 86-126 (175)
307 2p65_A Hypothetical protein PF 34.9 25 0.00085 19.9 2.2 42 6-47 115-163 (187)
308 2jlq_A Serine protease subunit 34.7 94 0.0032 21.0 5.3 39 4-44 108-149 (451)
309 2kpt_A Putative secreted prote 34.5 48 0.0017 19.4 3.4 34 10-44 16-52 (148)
310 3rsi_A Putative enoyl-COA hydr 34.3 69 0.0023 20.2 4.3 41 9-49 21-66 (265)
311 2a7k_A CARB; crotonase, antibi 34.2 73 0.0025 19.9 4.4 36 9-44 12-52 (250)
312 1sxj_A Activator 1 95 kDa subu 34.1 73 0.0025 22.1 4.8 41 5-46 147-189 (516)
313 3m0z_A Putative aldolase; MCSG 34.0 12 0.00042 24.3 0.7 25 8-34 187-211 (249)
314 3rrv_A Enoyl-COA hydratase/iso 34.0 61 0.0021 20.7 4.1 37 9-45 40-81 (276)
315 4ad9_A Lactb2, beta-lactamase- 33.8 75 0.0026 19.8 4.5 36 8-44 42-78 (289)
316 2qv0_A Protein MRKE; structura 33.6 58 0.002 17.4 5.4 38 5-45 54-92 (143)
317 1ef8_A Methylmalonyl COA decar 33.4 90 0.0031 19.6 4.8 36 9-44 16-55 (261)
318 1qo0_D AMIR; binding protein, 33.4 71 0.0024 18.4 4.1 36 6-45 52-88 (196)
319 3l3s_A Enoyl-COA hydratase/iso 33.3 84 0.0029 19.8 4.7 37 9-45 19-59 (263)
320 3m6y_A 4-hydroxy-2-oxoglutarat 33.2 13 0.00044 24.5 0.7 21 14-34 214-234 (275)
321 3tlf_A Enoyl-COA hydratase/iso 33.1 64 0.0022 20.5 4.1 41 9-49 23-68 (274)
322 3bt7_A TRNA (uracil-5-)-methyl 32.9 81 0.0028 20.8 4.7 37 6-48 295-331 (369)
323 1jbe_A Chemotaxis protein CHEY 32.5 57 0.0019 17.0 5.7 38 5-45 48-88 (128)
324 3ilh_A Two component response 32.5 60 0.0021 17.3 5.2 38 5-45 59-101 (146)
325 4dgh_A Sulfate permease family 32.4 65 0.0022 17.7 5.9 42 6-47 48-92 (130)
326 3gt7_A Sensor protein; structu 32.1 66 0.0023 17.7 5.5 37 5-44 50-89 (154)
327 2z0m_A 337AA long hypothetical 31.9 12 0.00041 23.6 0.4 40 5-44 128-168 (337)
328 1x52_A Pelota homolog, CGI-17; 31.9 40 0.0014 19.2 2.7 37 9-45 58-96 (124)
329 2pbp_A Enoyl-COA hydratase sub 31.5 81 0.0028 19.8 4.3 38 8-45 16-58 (258)
330 3nwy_A Uridylate kinase; allos 31.5 55 0.0019 21.3 3.6 27 17-43 67-95 (281)
331 3i42_A Response regulator rece 31.4 60 0.0021 16.9 5.4 38 5-45 46-86 (127)
332 1p2f_A Response regulator; DRR 31.3 81 0.0028 18.4 4.8 38 5-45 42-80 (220)
333 2kw7_A Conserved domain protei 31.1 80 0.0027 18.3 4.1 33 10-43 20-55 (157)
334 3cf2_A TER ATPase, transitiona 31.1 41 0.0014 25.3 3.2 54 5-58 296-369 (806)
335 2f6q_A Peroxisomal 3,2-trans-e 30.9 76 0.0026 20.3 4.2 40 9-49 38-82 (280)
336 1udx_A The GTP-binding protein 30.9 16 0.00056 25.1 1.0 35 5-44 269-306 (416)
337 1q57_A DNA primase/helicase; d 30.9 79 0.0027 21.7 4.5 41 5-45 353-403 (503)
338 1uiy_A Enoyl-COA hydratase; ly 30.7 86 0.0029 19.6 4.3 37 9-45 11-52 (253)
339 1h2e_A Phosphatase, YHFR; hydr 30.7 51 0.0017 19.7 3.2 22 25-46 127-152 (207)
340 3gow_A PAAG, probable enoyl-CO 30.6 76 0.0026 19.9 4.1 37 9-45 12-53 (254)
341 4fzw_C 1,2-epoxyphenylacetyl-C 30.5 87 0.003 19.9 4.4 41 9-49 27-72 (274)
342 3t8b_A 1,4-dihydroxy-2-naphtho 30.3 82 0.0028 20.9 4.3 38 8-45 68-110 (334)
343 1dci_A Dienoyl-COA isomerase; 30.2 77 0.0026 20.0 4.1 37 9-45 16-57 (275)
344 3b6e_A Interferon-induced heli 30.1 25 0.00085 20.6 1.6 25 5-29 161-185 (216)
345 4a8j_C Elongator complex prote 29.9 81 0.0028 20.8 4.1 42 5-46 148-196 (280)
346 3qxz_A Enoyl-COA hydratase/iso 29.8 92 0.0032 19.7 4.4 38 8-45 18-60 (265)
347 4dgf_A Sulfate transporter sul 29.7 76 0.0026 17.6 4.8 44 5-48 50-96 (135)
348 3io5_A Recombination and repai 29.7 72 0.0025 21.5 4.0 42 5-46 110-172 (333)
349 3i47_A Enoyl COA hydratase/iso 29.5 87 0.003 19.9 4.3 37 9-45 16-57 (268)
350 1rif_A DAR protein, DNA helica 29.4 40 0.0014 21.1 2.6 34 6-43 225-259 (282)
351 3trr_A Probable enoyl-COA hydr 29.4 82 0.0028 19.8 4.1 37 9-45 19-60 (256)
352 4f47_A Enoyl-COA hydratase ECH 29.2 93 0.0032 19.8 4.3 41 9-49 32-77 (278)
353 3hin_A Putative 3-hydroxybutyr 29.1 75 0.0026 20.3 3.9 37 9-45 28-67 (275)
354 3t3w_A Enoyl-COA hydratase; ss 29.0 82 0.0028 20.1 4.1 41 9-49 32-77 (279)
355 3qmj_A Enoyl-COA hydratase, EC 28.9 85 0.0029 19.7 4.1 37 9-45 18-59 (256)
356 3qxi_A Enoyl-COA hydratase ECH 28.8 84 0.0029 19.9 4.1 41 9-49 27-72 (265)
357 2j48_A Two-component sensor ki 28.7 62 0.0021 16.2 4.7 37 6-45 45-84 (119)
358 1mj3_A Enoyl-COA hydratase, mi 28.5 91 0.0031 19.6 4.2 38 8-45 18-60 (260)
359 1nzy_A Dehalogenase, 4-chlorob 28.4 91 0.0031 19.7 4.2 37 9-45 15-56 (269)
360 3h81_A Enoyl-COA hydratase ECH 28.4 86 0.0029 20.1 4.1 37 9-45 37-78 (278)
361 3pea_A Enoyl-COA hydratase/iso 28.3 1E+02 0.0034 19.4 4.4 37 9-45 18-58 (261)
362 2kx2_A MTH1821, putative uncha 28.3 44 0.0015 18.4 2.3 29 17-45 28-59 (96)
363 3pvs_A Replication-associated 28.2 55 0.0019 22.5 3.3 38 5-44 105-142 (447)
364 3snk_A Response regulator CHEY 28.2 37 0.0012 18.2 2.0 38 5-45 58-96 (135)
365 3sll_A Probable enoyl-COA hydr 28.1 98 0.0034 19.9 4.3 41 9-49 36-81 (290)
366 3pe8_A Enoyl-COA hydratase; em 28.0 84 0.0029 19.8 4.0 37 9-45 21-62 (256)
367 1pjh_A Enoyl-COA isomerase; EC 28.0 88 0.003 19.9 4.1 37 9-45 21-62 (280)
368 3r9t_A ECHA1_1; ssgcid, seattl 28.0 94 0.0032 19.7 4.2 37 9-45 21-62 (267)
369 1xp2_A EAD500, PLY500, L-alany 27.8 70 0.0024 19.7 3.4 27 17-43 31-59 (179)
370 3hrx_A Probable enoyl-COA hydr 27.8 91 0.0031 19.4 4.1 38 9-46 12-54 (254)
371 2j5i_A P-hydroxycinnamoyl COA 27.7 95 0.0032 19.7 4.2 37 9-45 21-62 (276)
372 4fzw_A 2,3-dehydroadipyl-COA h 27.7 1E+02 0.0036 19.3 4.4 38 8-45 16-58 (258)
373 3oc7_A Enoyl-COA hydratase; se 27.6 92 0.0032 19.6 4.1 38 8-45 22-64 (267)
374 2ej5_A Enoyl-COA hydratase sub 27.5 98 0.0034 19.4 4.2 37 9-45 15-56 (257)
375 3n53_A Response regulator rece 27.2 77 0.0026 16.9 3.9 37 6-45 46-85 (140)
376 3r9q_A Enoyl-COA hydratase/iso 27.2 94 0.0032 19.6 4.1 37 9-45 23-64 (262)
377 3bh0_A DNAB-like replicative h 27.1 1.3E+02 0.0044 19.4 5.1 10 7-16 152-161 (315)
378 1ofh_A ATP-dependent HSL prote 27.1 86 0.003 19.4 3.9 14 6-19 116-129 (310)
379 1jjt_A IMP-1 metallo beta-lact 27.1 50 0.0017 19.9 2.7 28 17-44 49-77 (228)
380 3qre_A Enoyl-COA hydratase, EC 27.0 1E+02 0.0036 19.9 4.3 42 8-49 41-87 (298)
381 4fak_A Ribosomal RNA large sub 26.9 1.1E+02 0.0037 18.4 4.7 54 6-59 74-132 (163)
382 3htu_A Vacuolar protein-sortin 26.9 78 0.0027 16.8 3.7 28 13-40 41-68 (79)
383 3g64_A Putative enoyl-COA hydr 26.6 87 0.003 19.9 3.9 37 9-45 29-70 (279)
384 3myb_A Enoyl-COA hydratase; ss 26.6 96 0.0033 19.9 4.1 37 9-45 38-79 (286)
385 1zgz_A Torcad operon transcrip 26.4 74 0.0025 16.4 5.9 38 5-45 45-82 (122)
386 2vo9_A EAD500, L-alanyl-D-glut 26.4 76 0.0026 19.2 3.4 29 16-44 30-60 (179)
387 3llo_A Prestin; STAS domain, c 26.4 89 0.0031 17.3 5.6 43 6-48 63-108 (143)
388 1vma_A Cell division protein F 26.3 97 0.0033 20.1 4.1 13 5-17 185-197 (306)
389 4eml_A Naphthoate synthase; 1, 26.3 99 0.0034 19.7 4.1 36 9-44 22-62 (275)
390 2uzf_A Naphthoate synthase; ly 26.2 1.1E+02 0.0039 19.3 4.3 37 9-45 25-66 (273)
391 2q35_A CURF; crotonase, lyase; 26.2 1E+02 0.0034 19.2 4.1 37 9-45 15-56 (243)
392 3nbx_X ATPase RAVA; AAA+ ATPas 26.2 72 0.0025 22.4 3.6 27 6-33 109-135 (500)
393 4b4t_M 26S protease regulatory 26.2 62 0.0021 22.4 3.2 44 5-48 273-332 (434)
394 4di1_A Enoyl-COA hydratase ECH 26.1 1.1E+02 0.0039 19.5 4.4 37 9-45 36-76 (277)
395 3dzd_A Transcriptional regulat 25.9 1.5E+02 0.005 19.6 5.7 39 6-45 222-272 (368)
396 3fdu_A Putative enoyl-COA hydr 25.9 1.1E+02 0.0037 19.4 4.2 37 9-45 17-58 (266)
397 3nhm_A Response regulator; pro 25.9 79 0.0027 16.5 5.2 38 5-45 46-86 (133)
398 2o0j_A Terminase, DNA packagin 25.6 1.6E+02 0.0054 20.0 5.4 40 5-44 272-313 (385)
399 1p6q_A CHEY2; chemotaxis, sign 25.6 79 0.0027 16.4 4.3 38 5-45 50-90 (129)
400 1k68_A Phytochrome response re 25.5 80 0.0027 16.5 4.6 38 5-45 54-94 (140)
401 1mb3_A Cell division response 25.4 77 0.0026 16.3 4.6 36 6-44 45-83 (124)
402 1wz8_A Enoyl-COA hydratase; ly 25.4 1E+02 0.0035 19.4 4.0 37 9-45 23-63 (264)
403 3r0j_A Possible two component 25.4 1.2E+02 0.004 18.3 5.7 38 5-45 66-104 (250)
404 3kqf_A Enoyl-COA hydratase/iso 25.2 1.1E+02 0.0037 19.3 4.1 37 9-45 21-62 (265)
405 2a6p_A Possible phosphoglycera 25.2 63 0.0022 19.4 2.9 23 25-47 129-155 (208)
406 2jba_A Phosphate regulon trans 25.1 80 0.0027 16.3 4.4 38 5-45 45-85 (127)
407 3lao_A Enoyl-COA hydratase/iso 25.1 1.1E+02 0.0037 19.2 4.1 37 9-45 24-65 (258)
408 2v6i_A RNA helicase; membrane, 25.0 1.6E+02 0.0055 19.8 5.8 39 4-44 91-132 (431)
409 2qvg_A Two component response 25.0 86 0.0029 16.6 5.7 38 5-45 58-98 (143)
410 3zxn_A RSBS, anti-sigma-factor 24.9 95 0.0033 17.1 4.9 44 6-49 42-88 (123)
411 1k66_A Phytochrome response re 24.8 86 0.003 16.6 4.5 38 5-45 61-101 (149)
412 2kln_A Probable sulphate-trans 24.7 44 0.0015 18.4 2.0 20 14-33 20-39 (130)
413 3k7i_B IHH, HHG-2, indian hedg 24.6 14 0.00049 23.0 -0.2 30 3-32 68-97 (187)
414 1zp6_A Hypothetical protein AT 24.6 16 0.00055 21.2 0.0 37 19-55 132-169 (191)
415 3njd_A Enoyl-COA hydratase; ss 24.5 92 0.0032 20.5 3.8 41 9-49 47-92 (333)
416 2hqs_H Peptidoglycan-associate 24.5 96 0.0033 17.0 3.7 40 5-44 3-45 (118)
417 4hdt_A 3-hydroxyisobutyryl-COA 24.5 1.1E+02 0.0036 20.4 4.1 37 8-44 20-61 (353)
418 3t89_A 1,4-dihydroxy-2-naphtho 24.3 1.1E+02 0.0038 19.6 4.1 38 9-46 40-82 (289)
419 3rqi_A Response regulator prot 24.0 60 0.002 18.6 2.5 38 5-45 50-88 (184)
420 3mca_B Protein DOM34, elongati 23.9 1E+02 0.0036 20.9 4.0 38 8-45 310-349 (390)
421 4e5v_A Putative THUA-like prot 23.9 1.5E+02 0.0052 19.1 6.0 39 3-43 55-93 (281)
422 3isa_A Putative enoyl-COA hydr 23.6 1.1E+02 0.0039 19.1 4.0 37 9-45 19-59 (254)
423 3e1s_A Exodeoxyribonuclease V, 23.6 52 0.0018 23.5 2.5 35 6-44 279-314 (574)
424 2r44_A Uncharacterized protein 23.6 90 0.0031 19.8 3.5 25 8-33 111-135 (331)
425 4hl2_A Beta-lactamase NDM-1; s 23.6 79 0.0027 19.1 3.1 28 17-44 64-93 (243)
426 3gl9_A Response regulator; bet 23.6 89 0.003 16.3 5.2 38 5-45 45-85 (122)
427 3kcn_A Adenylate cyclase homol 23.6 97 0.0033 16.8 5.4 36 7-45 49-85 (151)
428 3he2_A Enoyl-COA hydratase ECH 23.4 1.5E+02 0.0051 18.8 4.6 37 9-45 33-73 (264)
429 2qen_A Walker-type ATPase; unk 23.3 82 0.0028 19.7 3.3 41 6-46 128-174 (350)
430 2a9o_A Response regulator; ess 23.2 85 0.0029 15.9 4.5 37 6-45 45-81 (120)
431 2vhj_A Ntpase P4, P4; non- hyd 22.8 81 0.0028 21.2 3.2 36 9-44 185-234 (331)
432 3lke_A Enoyl-COA hydratase; ny 22.8 1.3E+02 0.0045 18.9 4.1 37 9-45 16-57 (263)
433 3i5x_A ATP-dependent RNA helic 22.8 81 0.0028 21.7 3.4 41 4-44 224-272 (563)
434 1ujc_A Phosphohistidine phosph 22.8 65 0.0022 18.5 2.5 23 25-47 86-111 (161)
435 2qzj_A Two-component response 22.7 98 0.0034 16.5 4.1 38 5-45 47-84 (136)
436 3bpt_A 3-hydroxyisobutyryl-COA 22.4 1.2E+02 0.0042 20.1 4.1 37 9-45 18-59 (363)
437 2iut_A DNA translocase FTSK; n 22.3 93 0.0032 22.5 3.6 39 9-47 346-389 (574)
438 3ju1_A Enoyl-COA hydratase/iso 22.3 1.3E+02 0.0044 20.5 4.2 37 9-45 54-95 (407)
439 1z9d_A Uridylate kinase, UK, U 22.3 1.3E+02 0.0045 18.7 4.0 31 13-43 21-53 (252)
440 3p5m_A Enoyl-COA hydratase/iso 22.2 93 0.0032 19.5 3.3 37 9-45 18-59 (255)
441 2qby_B CDC6 homolog 3, cell di 22.2 18 0.00062 23.4 -0.1 38 9-46 136-174 (384)
442 1lv7_A FTSH; alpha/beta domain 22.2 1.4E+02 0.0048 18.1 4.9 42 6-47 104-161 (257)
443 2jjq_A Uncharacterized RNA met 22.1 1.9E+02 0.0066 19.6 5.5 40 6-49 353-392 (425)
444 3oiz_A Antisigma-factor antago 21.9 99 0.0034 16.2 3.6 44 5-48 42-88 (99)
445 3sqw_A ATP-dependent RNA helic 21.9 35 0.0012 23.9 1.3 41 4-44 173-221 (579)
446 3hjg_A Putative alpha-ribazole 21.8 82 0.0028 18.9 2.9 23 24-46 126-151 (213)
447 2r25_B Osmosensing histidine p 21.8 1E+02 0.0035 16.3 5.3 38 5-45 51-90 (133)
448 2fhx_A SPM-1; metallo-beta-lac 21.8 89 0.0031 18.7 3.1 33 9-44 42-76 (246)
449 4a7w_A Uridylate kinase; trans 21.7 1.2E+02 0.0041 18.9 3.8 29 17-45 25-55 (240)
450 3r7a_A Phosphoglycerate mutase 21.7 60 0.0021 19.7 2.3 11 36-46 174-184 (237)
451 3h0u_A Putative enoyl-COA hydr 21.7 1.7E+02 0.0057 18.8 4.8 36 9-44 20-59 (289)
452 3moy_A Probable enoyl-COA hydr 21.7 1.4E+02 0.0047 18.8 4.1 38 8-45 21-63 (263)
453 1to0_A Hypothetical UPF0247 pr 21.7 1.4E+02 0.0048 17.9 5.0 51 9-59 73-128 (167)
454 3swx_A Probable enoyl-COA hydr 21.6 1.5E+02 0.005 18.6 4.2 37 9-45 21-62 (265)
455 3t6k_A Response regulator rece 21.5 1E+02 0.0036 16.4 5.5 38 5-45 47-87 (136)
456 2xmo_A LMO2642 protein; phosph 21.3 1.3E+02 0.0043 20.1 4.0 30 17-46 214-245 (443)
457 1mqo_A Beta-lactamase II; alph 21.2 72 0.0025 19.0 2.6 28 17-44 57-86 (227)
458 1yks_A Genome polyprotein [con 21.2 1.8E+02 0.0061 19.6 4.8 39 4-44 97-138 (440)
459 1hzd_A AUH, AU-binding protein 21.0 89 0.003 19.8 3.1 37 8-44 23-64 (272)
460 3ek6_A Uridylate kinase; UMPK 21.0 1.3E+02 0.0043 18.8 3.8 29 16-44 26-56 (243)
461 3f6p_A Transcriptional regulat 20.9 1E+02 0.0034 16.0 5.2 37 5-44 45-81 (120)
462 2a1f_A Uridylate kinase; PYRH, 20.9 1.4E+02 0.0049 18.4 4.0 31 13-43 22-54 (247)
463 3hp0_A Putative polyketide bio 20.9 1.1E+02 0.0039 19.3 3.6 37 9-45 19-59 (267)
464 3hdv_A Response regulator; PSI 20.6 1.1E+02 0.0036 16.1 4.8 37 6-45 52-90 (136)
465 3pvh_A UPF0603 protein AT1G547 20.2 88 0.003 18.2 2.7 36 8-44 15-53 (153)
466 2qni_A AGR_C_517P, uncharacter 20.1 42 0.0015 20.5 1.3 23 25-47 139-166 (219)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.71 E-value=9e-18 Score=108.81 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=54.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++.++++.++++ + +.|+|++||+++....||+++.+.+|+
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~ 222 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCE
Confidence 5789999999999999999999999999988 3 899999999998777899999999886
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.69 E-value=4.1e-17 Score=105.00 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=54.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+....||+++.+.+|+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~ 216 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGK 216 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999988 6899999999988777799999998875
No 3
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.69 E-value=2.5e-17 Score=107.42 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=58.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.|+|++||+++.+..||+++.+.+|+ +..+...+
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 229 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKE 229 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 5789999999999999999999999999998 8899999999998877799999999886 44444433
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.68 E-value=5.2e-17 Score=111.43 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=61.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+.+|++|||||||++||+.++..+++.|+++ .+.|+|+|||+++.+. .||+++.+.+|+ +..+...+++.
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 5799999999999999999999999999988 4899999999998875 699999999988 66666665554
No 5
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.68 E-value=2.1e-17 Score=111.02 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=60.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+++|++|||||||++||+.++..+.+.|+++ ++.|+|+|||+++.+..||+++.+.+|+ +..++..+++
T Consensus 206 ~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 206 LKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 4689999999999999999999999999998 8899999999999888899999999987 5555554443
No 6
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.68 E-value=3.1e-16 Score=95.84 Aligned_cols=57 Identities=26% Similarity=0.244 Sum_probs=52.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+|++++|||||++||+..+..+.+.++++ .+.++|++||+......||+++.+.++
T Consensus 80 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~ 138 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE 138 (148)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEE
T ss_pred CCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcC
Confidence 689999999999999999999999999998 578999999998766789999999765
No 7
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.67 E-value=5.5e-17 Score=107.08 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=57.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|++|||||||++||+.++..+++.|+++ + +.++|++||+.+.+..||+++.+.+|+ +..+...
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~ 241 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 5799999999999999999999999999988 4 899999999998877799999999886 4444433
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.67 E-value=1.1e-17 Score=110.24 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=58.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeeec
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+|++|||||||++||+.++.++++.|+++ .+.++|++||+.+.+. .||+++.+.+|+ +..+...++++
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 89999999999999999999999999988 3579999999998765 799999999987 55555555443
No 9
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.67 E-value=3.7e-17 Score=108.30 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=59.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++|||||||++||+.++..+++.++++ .+.|+|++||+++.+. .||+++.+.+|+ +..+...+++
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5799999999999999999999999999987 3899999999988765 699999999987 5555555443
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.67 E-value=5.6e-17 Score=106.83 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=59.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+.+|+ +..+...++.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 5789999999999999999999999999988 6899999999988765 699999999887 4444444443
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.67 E-value=4.2e-17 Score=107.15 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=58.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. .||+++.+.+|+ +..+...++.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 4789999999999999999999999999988 6899999999988765 699999999887 4444444443
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.66 E-value=6.8e-17 Score=104.89 Aligned_cols=65 Identities=11% Similarity=0.068 Sum_probs=56.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++..+.+.|+++ .+.++|++||+.+.+ ..||+++.+.+|+ ...+..
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 5799999999999999999999999999988 689999999998765 5799999998886 433333
No 13
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.66 E-value=4e-16 Score=97.49 Aligned_cols=66 Identities=29% Similarity=0.576 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~~ 73 (80)
+++||++||||||++||+.+...+.++++++ ++.++|++||+...+..||+++++... .+.+++++
T Consensus 84 ~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~----~g~s~~~~ 150 (173)
T 3kta_B 84 FKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR----DGVSKVVS 150 (173)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE----TTEEEEEE
T ss_pred cCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec----CCEEEEEE
Confidence 5678999999999999999999999999988 778999999998888899999999876 45565553
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.66 E-value=5.7e-17 Score=106.12 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=57.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+.+|+ +..+...
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 238 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHH
Confidence 4789999999999999999999999999988 689999999998876 4799999999886 4434433
No 15
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.66 E-value=1e-16 Score=105.54 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=55.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-c-CceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-H-SDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~-~d~~~~i~~~~-~~~~~ 67 (80)
+.+|+++||||||++||+.++..+++.|+++ ++.++|++||+.+.+. . ||+++.+.+|+ ...+.
T Consensus 180 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 180 VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 4689999999999999999999999999998 5899999999988775 3 89999998886 44333
No 16
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.66 E-value=4.5e-17 Score=106.90 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=57.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.|+|++||+++.+..||+++.+.+|+ ...+...
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 4689999999999999999999999999988 7899999999988877799999998886 4444433
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.65 E-value=1.5e-16 Score=104.40 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=57.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+++.+. .||+++.+.+|+ ...+...
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHH
Confidence 5789999999999999999999999999988 6899999999988775 599999999887 4434333
No 18
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.65 E-value=9.2e-17 Score=105.66 Aligned_cols=65 Identities=18% Similarity=0.090 Sum_probs=56.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+++.+. .||+++.+.+|+ ...+..
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 5799999999999999999999999999988 6899999999988765 699999998876 433333
No 19
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.64 E-value=8e-17 Score=104.82 Aligned_cols=68 Identities=18% Similarity=0.059 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+.++..+++.++++ + +.++|++||+.+.+ ..||+++.+.+|+ ...+...++
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 5789999999999999999999999999987 3 89999999998865 5799999999887 444444443
No 20
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.64 E-value=3.3e-17 Score=106.45 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=58.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.|+|++||+.+.+..||+++.+.+|+ ...+...+
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNE 223 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 3689999999999999999999999999988 8899999999998777799999999887 44444443
No 21
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.63 E-value=1e-16 Score=103.93 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=55.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHH---cC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIR---TV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~---~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+++.+. ++ ++.|+|++||+.+....||+++.+.+|+ ...+...
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQ 213 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHH
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 36899999999999999999999999995 45 6889999999988777899999998886 4434433
No 22
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.63 E-value=1.6e-16 Score=102.48 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=56.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHH-HHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQY-IRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~-l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+.+|+++||||||++||+.++..+.+. ++++ ++.++|++||+.+....||+++.+.+|+ ...+...+
T Consensus 146 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 215 (229)
T 2pze_A 146 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 215 (229)
T ss_dssp HSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 478999999999999999999999997 4566 7889999999988777799999998886 44444433
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.63 E-value=2.2e-16 Score=102.96 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=53.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-c-CceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-H-SDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~-~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+. . ||+++.+.+|+
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~ 221 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGR 221 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTE
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCE
Confidence 3689999999999999999999999999987 5899999999988776 4 59999998886
No 24
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.63 E-value=2.4e-16 Score=112.85 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=61.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+++|+++||||||++||+.++.++.+.++++ +++|+|+|||+.+....||+++.+++|+ +..|+..+++
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4799999999999999999999999999988 8999999999999888999999999987 5555554443
No 25
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.63 E-value=3.6e-16 Score=111.58 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=60.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+++|++++|||||++||+.++..+.+.++++ +++|+|++||+++....||+++.+.+|+ ...|+..++.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 5799999999999999999999999999998 8899999999999888899999999987 5555544443
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.62 E-value=7.8e-16 Score=100.74 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=53.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
+.+|+++||||||++||+.++..+.+.|+++ + +.++|++||+.+.+ ..||+++.+.+|+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 4789999999999999999999999999988 4 89999999998876 5799999998774
No 27
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.62 E-value=3e-16 Score=112.42 Aligned_cols=70 Identities=10% Similarity=0.066 Sum_probs=62.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|+++||||||++||+.++..+.+.++++ +++|+|+|||+.+....||+++.+.+|+ +..|+..+++.
T Consensus 507 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 507 LANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 4799999999999999999999999999998 8999999999999888899999999998 66666655443
No 28
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.61 E-value=2.7e-16 Score=112.26 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=61.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|++++|||||++||+.++..+.+.++++ ++.|+|+|||+++....||+++.+.+|+ ...|+..++..
T Consensus 493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 493 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 4689999999999999999999999999988 8899999999999888899999999988 56566555443
No 29
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.61 E-value=5.3e-16 Score=110.98 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=60.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|+++||||||++||+.++..+.+.++++ +++|+|++||+++....||+++.+.+|+ ...|+..+++.
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 4689999999999999999999999999998 8899999999999888899999999987 55555555443
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.61 E-value=2.5e-16 Score=104.45 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=56.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceE--EEEEeChhhH-hcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNV--IAVSLKPQFY-FHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~i--i~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+++.|+++ ++.++ |++||+.+.+ ..||+++.+.+|+ +..+...
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 4789999999999999999999999999988 47899 9999998876 5799999998886 4434333
No 31
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.60 E-value=3.4e-16 Score=111.75 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=59.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+++|++++|||||++||+.++.++.+.++++ +++|+|++||+++....||+++.+.+|+ ...|+..++
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 4689999999999999999999999999998 8999999999999888899999999987 444544443
No 32
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.60 E-value=7.4e-16 Score=105.47 Aligned_cols=69 Identities=16% Similarity=0.016 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGRV 72 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~~ 72 (80)
+.+|++|||||||++||+..+.++.+.+.++ .+.|+|+|||+.+.+ ..||+++.+.+|+ ...+...++.
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 5789999999999999999999999877765 589999999998765 5799999999987 5555544433
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.60 E-value=3e-16 Score=102.64 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=50.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH-hcCceEEEEeeec
Q psy832 9 FLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY-FHSDILFGITLKM 62 (80)
Q Consensus 9 illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~-~~~d~~~~i~~~~ 62 (80)
++||||||++||+.++..+.+.|+++ ++.++|++||+.+.+ ..||+++.+.+|+
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 210 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 210 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999988 688999999998887 5799999998886
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.59 E-value=9e-16 Score=101.08 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=54.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhH-hcCc-eEEEEeeec-cCCcce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFY-FHSD-ILFGITLKM-LGSLTI 68 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~-~~~d-~~~~i~~~~-~~~~~~ 68 (80)
+.+|+++||||||++||+.++.++.+.|+++.+ ++|++||+.+.+ ..|| +++.+.+|+ ...+..
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~ 210 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISV 210 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEH
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCH
Confidence 478999999999999999999999999998833 999999998876 5799 999998876 443333
No 35
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.59 E-value=3.9e-15 Score=101.49 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
.+|+++||||||++||+.....+++.++++ .+.++|+|||+++....||+++.+.+|+
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~ 361 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGV 361 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 689999999999999999999999999998 6899999999998877899999998875
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.59 E-value=1.6e-15 Score=103.36 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++|||||||++||+..+.++.+.|+++ .+.|+|++||+.+.+ ..||+++.+.+|+ ...+...++
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 5799999999999999999999999999987 489999999998765 5799999999887 444444443
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.58 E-value=1.2e-15 Score=101.70 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=55.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHH-HcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCccee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYI-RTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIK 69 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l-~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~ 69 (80)
+.+|+++||||||++||+.++..+++.+ +++ ++.++|++||+.+....||+++.+.+|+ ...+...
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~ 243 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFS 243 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHH
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHH
Confidence 4789999999999999999999999974 556 7889999999998877799999998886 4434433
No 38
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.58 E-value=1.4e-15 Score=104.05 Aligned_cols=68 Identities=15% Similarity=-0.034 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++|||||||++||+..+.++.+.|+++ .+.|+|++||+.+.+ ..||+++.+.+|+ ...++..++
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 5799999999999999999999999999987 389999999998765 5799999999887 444444443
No 39
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.58 E-value=1.2e-15 Score=104.28 Aligned_cols=68 Identities=18% Similarity=0.035 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++|||||||++||+..+.++.+.|+++ + +.|+|++||+.+.+ ..||+++.+.+|+ ...+...++
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 5799999999999999999999999999987 3 89999999998765 5699999999887 444444443
No 40
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.58 E-value=6.2e-16 Score=106.73 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++|||||||++||+..+.++.+.|+++ .+.|+|++||+.+.+..||+++.+.+|+ ...++..++
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 4789999999999999999999999999988 7899999999988877899999999987 454554443
No 41
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.57 E-value=9.4e-16 Score=117.45 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=63.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|++||||||||+||+++.+.+.+.|++. +++|+|+|+|+.+....||+|+.+.+|+ ++.|+..+++.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5799999999999999999999999999999 9999999999999999999999999998 66666665554
No 42
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.57 E-value=8.3e-16 Score=105.93 Aligned_cols=68 Identities=15% Similarity=-0.058 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++|||||||++||+..+.++.+.|+++ .+.|+|+|||+.+.+ ..||+++.+.+|+ ...++..++
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 3689999999999999999999999999988 389999999998765 5799999999987 444444443
No 43
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.57 E-value=1.2e-15 Score=104.04 Aligned_cols=68 Identities=19% Similarity=0.070 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+..+.++.+.|+++ .+.|+|++||+.+.+ ..||+++.+.+|+ ...+...++
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 5799999999999999999999999999987 389999999998765 5799999999887 444444443
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.57 E-value=1.6e-15 Score=104.10 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=57.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++|||||||++||+..+.++.+.|+++ .+.|+|++||+.+.+ ..||+++.+.+|+ ...++..++
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 4789999999999999999999999999987 389999999998765 5799999999887 444444443
No 45
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.57 E-value=1.8e-14 Score=97.06 Aligned_cols=58 Identities=26% Similarity=0.228 Sum_probs=53.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++||||||++||+..+..+.+.|+++ .+.++|++||+.+....||+++.+...
T Consensus 270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~~~ 329 (339)
T 3qkt_A 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE 329 (339)
T ss_dssp TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEEec
Confidence 3589999999999999999999999999987 578999999998877889999999876
No 46
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.57 E-value=1.5e-15 Score=103.95 Aligned_cols=68 Identities=19% Similarity=0.060 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|+++||||||++||+..+.++.+.|+++ .+.|+|++||+.+.+ ..||+++.+.+|+ ...+...++
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 5799999999999999999999999999988 389999999998765 5799999999887 444444443
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.56 E-value=2.2e-15 Score=103.47 Aligned_cols=68 Identities=18% Similarity=0.006 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C-CceEEEEEeChhhH-hcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--P-KMNVIAVSLKPQFY-FHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~-~~~ii~ish~~~~~-~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+.+|++|||||||++||+..+.++.+.|+++ + +.|+|++||+.+.+ ..||+++.+.+|+ ...++..++
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 5789999999999999999999999999987 3 89999999998765 5799999999887 444444443
No 48
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.55 E-value=2.8e-15 Score=108.35 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEE------eeec-cCCcceeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGI------TLKM-LGSLTIKGR 71 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i------~~~~-~~~~~~~~~ 71 (80)
+|++|||||||++||+.++.++++.++++ .+.|+|+|||+++.+..||+++.+ ..|+ +..++..++
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHH
Confidence 46799999999999999999999999988 689999999999988889999999 5666 455544443
No 49
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.54 E-value=1.1e-14 Score=99.48 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=52.7
Q ss_pred CCC--CEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPS--PFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~--~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+| ++|||||||++||+..+..+.+.|+++ ++.|+|+|||+++++..||+++.+.++
T Consensus 312 ~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 312 LGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 371 (415)
T ss_dssp HCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred hCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEe
Confidence 466 999999999999999999999999998 889999999999888889999999554
No 50
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.53 E-value=3.7e-15 Score=107.74 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=50.1
Q ss_pred CCCC--EEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEE
Q psy832 5 KPSP--FLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGI 58 (80)
Q Consensus 5 ~~~~--illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i 58 (80)
.+|+ +|||||||++||+..+.++++.|+++ .+.|+|+|||+++.+..||+++.+
T Consensus 219 ~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l 276 (670)
T 3ux8_A 219 SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI 276 (670)
T ss_dssp TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEE
T ss_pred hCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEe
Confidence 4666 99999999999999999999999998 789999999999988789999999
No 51
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.52 E-value=4e-14 Score=97.74 Aligned_cols=68 Identities=38% Similarity=0.637 Sum_probs=59.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEeeeccCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITLKMLGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~~~~~~~~~~~~~~ 73 (80)
+++||++|||||+++||+.++..+.+.++++ .+.|+|++||+...+..||+++++++. ...++|.+++
T Consensus 353 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~~--~~~~~s~~~~ 422 (430)
T 1w1w_A 353 YQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQ--QQENSSKIIT 422 (430)
T ss_dssp SSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEEE--TTTTEEEEEE
T ss_pred CCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEEe--CCCCeeEEEE
Confidence 3689999999999999999999999999987 478999999998888889999999886 3356777765
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.1e-14 Score=105.02 Aligned_cols=71 Identities=17% Similarity=0.050 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEee--ec-cCCcceeeeecC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITL--KM-LGSLTIKGRVHK 74 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~--~~-~~~~~~~~~~~~ 74 (80)
+.+|++|||||||++||+.++..+++.|+++ .+.|+|+|||+.+.+. .||+++.+.. |+ ...+++.++++.
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 5789999999999999999999999999987 4899999999988775 6999999986 33 455666655543
No 53
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.51 E-value=8.8e-14 Score=93.08 Aligned_cols=57 Identities=30% Similarity=0.528 Sum_probs=50.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
+++|+++||||||++||+.....+.+.++++ ++.++|++||+......||++.++..
T Consensus 239 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~ 296 (322)
T 1e69_A 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (322)
T ss_dssp TSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEE
Confidence 4689999999999999999999999999988 78899999999887788999854443
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.51 E-value=6.4e-15 Score=112.68 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=61.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGRVH 73 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~~~ 73 (80)
+++|++|||||||++||+.++..+.+.+++. +++|+|+|||+.+....||+++.+.+|+ .+.|+..+++.
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 4689999999999999999999999999888 8999999999999888899999999998 55555554443
No 55
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.50 E-value=1.5e-14 Score=108.09 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=50.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
+|++|||||||+|||+.....+++.|+++ ++.|+|+|||+++.+..||+++.+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLg 881 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLG 881 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEec
Confidence 56899999999999999999999999988 7899999999999888899999994
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.50 E-value=4e-14 Score=100.84 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=53.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+++|++|||||||++||+.++..+++.|+++ .+.++|+|||+.+.+. .||+++.++.+
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4789999999999999999999999999987 5899999999998875 69999999875
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.50 E-value=4.1e-14 Score=100.67 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=52.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++|||||||++||+..+.++.+.|+++ .+.++|+|||+.+.+. .||+++.+..+
T Consensus 174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 4789999999999999999999999999988 6899999999988765 69999998764
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.49 E-value=1e-14 Score=111.76 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=60.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKG 70 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~ 70 (80)
+++|+++|||||||+||++++..+.+.|.++ +++|+|+|||+...+..||+++.+.+|+ ++.|+-.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHH
Confidence 6899999999999999999999999999998 9999999999999999999999999988 55555443
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.48 E-value=1.4e-14 Score=110.77 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=60.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeeec-cCCcceeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLTIKGR 71 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~~~~~ 71 (80)
+++|+++|||||||+||+++...+.+.++.. +++|+|+|||+.+.+..||+++.+.+|+ +..|+..++
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l 611 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHH
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 4689999999999999999999999999888 8999999999999988899999999988 555554443
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.48 E-value=4.2e-14 Score=100.59 Aligned_cols=58 Identities=22% Similarity=0.155 Sum_probs=52.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++|||||||++||+.++..+++.|+++ .+.++|+|||+.+.+. .||+++.+..+
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~ 478 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGE 478 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4789999999999999999999999999987 3889999999988775 69999999863
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.48 E-value=7.9e-14 Score=99.32 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=53.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++|||||||++||+..+.++.+.|+++ ++.++|+|||+.+.+. .||+++.++.+
T Consensus 154 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 4789999999999999999999999999998 8899999999988765 69999988765
No 62
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=2.6e-13 Score=92.34 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=52.2
Q ss_pred CC-CCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KP-SPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~-~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+ |+++||||||++||+..+..+.+.++++ .+.++|++||+++....||+++.+.+.
T Consensus 303 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~k~ 361 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKD 361 (371)
T ss_dssp SSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEEES
T ss_pred cCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEEec
Confidence 46 9999999999999999999999999988 667999999998877789999999876
No 63
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.47 E-value=7.1e-14 Score=100.74 Aligned_cols=57 Identities=23% Similarity=0.147 Sum_probs=52.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~~ 60 (80)
+++|++|||||||++||+.++..+.+.|+++ .+.++|++||+.+.+. .||+++.+..
T Consensus 487 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 4789999999999999999999999999987 4899999999988775 6999999975
No 64
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.47 E-value=7.7e-14 Score=100.55 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=52.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++|||||||++||+.++.++.+.|+++ .+.++|+|||+.+.+. .||+++.++.+
T Consensus 244 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 4789999999999999999999999999998 6899999999988765 69999998754
No 65
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.3e-13 Score=99.45 Aligned_cols=58 Identities=24% Similarity=0.197 Sum_probs=52.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~~i~~~ 61 (80)
+.+|++|||||||++||+..+..+.+.++++ .+.++|+|||+.+.+. .||+++.++.+
T Consensus 237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4689999999999999999999999999998 6889999999988775 69999999764
No 66
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.46 E-value=9.8e-15 Score=93.67 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=47.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHh-cCceEE
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYF-HSDILF 56 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~-~~d~~~ 56 (80)
+.+|+++||||||++||+.++..+.+.++++ ++.++|++||+.+.+. .||+++
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 5799999999999999999999999999988 5789999999988765 577776
No 67
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.44 E-value=1e-13 Score=97.78 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCC--CEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 5 KPS--PFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~--~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.+| ++|||||||+|||+.....+.+.|+++ ++.|+|+|||+++.+..||+++.+.++
T Consensus 414 ~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 414 LGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp HCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred hCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 466 999999999999999999999999998 789999999999988889999999876
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.44 E-value=8.2e-14 Score=103.44 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=50.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
+|++|||||||+|||+....++.+.|+++ .+.++|+|||+++.+..||+++.+.
T Consensus 751 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 751 GGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 47999999999999999999999999988 7899999999999888899999995
No 69
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.43 E-value=8.7e-14 Score=104.03 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=49.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEee
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
|.+|||||||++||+....++++.|+++ .|.|+|+|||+++.+..||+++.+.+
T Consensus 485 ~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgp 540 (916)
T 3pih_A 485 GVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGP 540 (916)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEES
T ss_pred CcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcC
Confidence 3499999999999999999999999998 68999999999998888999999943
No 70
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.42 E-value=1.1e-13 Score=103.76 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
+|++|||||||+|||+.....+++.|+++ .+.++|+|||+++.+..||+++.+.
T Consensus 866 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~ 921 (972)
T 2r6f_A 866 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLG 921 (972)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEc
Confidence 46999999999999999999999999988 7899999999998887899999994
No 71
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.40 E-value=1.7e-13 Score=102.99 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
+|++|||||||+|||+....++++.|+++ .+.++|+|||+++.+..||+++.+.
T Consensus 884 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~ 939 (993)
T 2ygr_A 884 GRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLG 939 (993)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 46999999999999999999999999988 7899999999999887899999995
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.38 E-value=4.2e-13 Score=100.92 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEe
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGIT 59 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~ 59 (80)
|.+|||||||++||+....++.+.|+++ .|.|+|+|+|+.+.+..||+++.+.
T Consensus 542 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lg 596 (993)
T 2ygr_A 542 GVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIG 596 (993)
T ss_dssp SCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEEC
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEec
Confidence 6899999999999999999999999998 7899999999999888899999995
No 73
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.37 E-value=1.4e-12 Score=97.87 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=50.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEee
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
|.+|||||||++||+....++++.|+++ .|.|+|+|+|+.+.+..||+++.+.+
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp 580 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGP 580 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECS
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCC
Confidence 5899999999999999999999999998 68999999999998888999999953
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.36 E-value=1.4e-12 Score=98.09 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=53.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.++.++.++|++ .+.++|++||+.+.+. .||+++.+.+|+
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 478999999999999999999999999988 7889999999988875 699999998876
No 75
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.33 E-value=1.8e-12 Score=97.53 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=52.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~-~~d~~~~i~~~~ 62 (80)
+.+|++|||||||++||+.+...+.+.|+++ +.++|+|||+.+.+. .||+++.+.+|+
T Consensus 917 ~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-g~tVIiISHD~e~v~~l~DrVivL~~G~ 975 (986)
T 2iw3_A 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIIITHSAEFTKNLTEEVWAVKDGR 975 (986)
T ss_dssp TTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-SSEEEEECSCHHHHTTTCCEEECCBTTB
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 5789999999999999999999999999876 459999999998875 699999998886
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.33 E-value=1.2e-12 Score=97.34 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=49.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEee
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
.+|||||||++||+....++.+.++.+ .+.|+|+|+|+.+.+..||+++.+.+
T Consensus 401 ~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgp 455 (842)
T 2vf7_A 401 VVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGP 455 (842)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECS
T ss_pred eEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCC
Confidence 599999999999999999999999988 68999999999998888999999954
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.17 E-value=2.7e-12 Score=78.96 Aligned_cols=52 Identities=4% Similarity=-0.079 Sum_probs=43.8
Q ss_pred cCCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHcC--CCceEEEEEeChhhHhcCceE
Q psy832 4 YKPSPFLLLDEIDAALDNI----------------NIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDIL 55 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~----------------~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~ 55 (80)
..+|++++|||||++||+. ....+.+.++++ +|.++|++||+++.+..++++
T Consensus 99 ~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 99 HCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp TCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4689999999999999999 558888888776 689999999999887665554
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.13 E-value=5.7e-11 Score=81.18 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=49.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
.+||++||||||++||+..+..+++.+.++. .++|++||. +. .+|+++.+..|+ ...+.
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~~th~-~~--~~~~i~~l~~G~i~~~g~ 350 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTEL-AP--GAALTLRAQAGRFTPVAD 350 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEEESSC-CT--TCSEEEEEETTEEEECCC
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC-cEEEEEEec-cc--cCCEEEEEECCEEEecCC
Confidence 6899999999999999999999999998764 688888884 33 899999998886 34333
No 79
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.94 E-value=7.7e-10 Score=83.07 Aligned_cols=59 Identities=3% Similarity=-0.016 Sum_probs=49.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHcC---CCceEEEEEeChhhHhcCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKT-IQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i-~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
+.+|+++|||||++|+|+.....+ ...++.+ .+.++|++||+.+....||++..+.++.
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~ 801 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEE
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeE
Confidence 578999999999999999988887 4455554 3899999999988888899887777764
No 80
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.93 E-value=6.5e-10 Score=70.50 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=45.6
Q ss_pred CCCCEEEEeCCCCCCC-----HHHHHHHHHHHHcC--CCceEEEEEeChhhH----------hcC-ceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALD-----NINIWKTIQYIRTV--PKMNVIAVSLKPQFY----------FHS-DILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-----~~~~~~i~~~l~~~--~~~~ii~ish~~~~~----------~~~-d~~~~i~~~ 61 (80)
.+|+++++|||++++| +..+..+.++++.+ .+.|+|++||+.... ..| |+++.+...
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~~ 208 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDLQ 208 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEeee
Confidence 5899999999999997 66666688888877 689999999986654 466 999999764
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.89 E-value=1e-09 Score=69.89 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=34.1
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHh
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYF 50 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~ 50 (80)
.+.+|+++||||||++ ++..+.+.|+++ ++.++| +||+.+.+.
T Consensus 119 L~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 119 RTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp CCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred HhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 3578999999999999 888889999888 788999 999987653
No 82
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.82 E-value=6.5e-09 Score=64.96 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=46.1
Q ss_pred CCC--EEEEeCCCCCC--CHHHHHHHHHHHHcC---CCceEEEEEeCh--------h-hHhcCceEEEEeee
Q psy832 6 PSP--FLLLDEIDAAL--DNINIWKTIQYIRTV---PKMNVIAVSLKP--------Q-FYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~--illlDEp~~~L--D~~~~~~i~~~l~~~---~~~~ii~ish~~--------~-~~~~~d~~~~i~~~ 61 (80)
+|+ ++++|||++.+ |+....++++.|+++ .+.++|++||.. . ....||+++.++..
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 688 99999999888 998889999988887 589999999987 2 34469999999876
No 83
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.79 E-value=5e-09 Score=78.63 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=41.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHH-HHHHcC---CCceEEEEEeChhhHhcCc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTI-QYIRTV---PKMNVIAVSLKPQFYFHSD 53 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~-~~l~~~---~~~~ii~ish~~~~~~~~d 53 (80)
+.+|+++|||||++|+|+.....+. ..++.+ .+.++|++||+.+....++
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHh
Confidence 5689999999999999999998887 566655 4899999999987765544
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.77 E-value=1.4e-08 Score=66.64 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=43.5
Q ss_pred cCCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHcC---CCceEEEEEeCh--h--------------------h-Hh
Q psy832 4 YKPSPFLLLDEIDA---A---LDN-INIWKTIQYIRTV---PKMNVIAVSLKP--Q--------------------F-YF 50 (80)
Q Consensus 4 ~~~~~illlDEp~~---~---LD~-~~~~~i~~~l~~~---~~~~ii~ish~~--~--------------------~-~~ 50 (80)
..+|+++|+|||++ + +|. ....++.+.|+++ .+.++|++||+. + . ..
T Consensus 145 ~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~ 224 (296)
T 1cr0_A 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQ 224 (296)
T ss_dssp TTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHH
T ss_pred hcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHh
Confidence 46899999999999 4 455 6667888888887 389999999984 3 3 34
Q ss_pred cCceEEEEeeec
Q psy832 51 HSDILFGITLKM 62 (80)
Q Consensus 51 ~~d~~~~i~~~~ 62 (80)
.||+++.+++++
T Consensus 225 ~aD~vi~L~~~~ 236 (296)
T 1cr0_A 225 LSDTIIALERNQ 236 (296)
T ss_dssp HCSEEEEEEEC-
T ss_pred hCcEEEEEecCc
Confidence 699999998874
No 85
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.76 E-value=7.7e-09 Score=64.24 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=40.3
Q ss_pred cCCCCEEEEeC--CCCCCCHHHHHHHHHHHHcCCCceEEEEEe---ChhhHh-cCce
Q psy832 4 YKPSPFLLLDE--IDAALDNINIWKTIQYIRTVPKMNVIAVSL---KPQFYF-HSDI 54 (80)
Q Consensus 4 ~~~~~illlDE--p~~~LD~~~~~~i~~~l~~~~~~~ii~ish---~~~~~~-~~d~ 54 (80)
+.+|++++||| ||+++|+...+.+.+.+++ .+.++|+++| +..... .+++
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-CCCeEEEEEccCCCchHHHHHHhc
Confidence 57899999999 9999999999999998876 4667888886 555543 4665
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.65 E-value=2e-10 Score=72.24 Aligned_cols=55 Identities=9% Similarity=-0.058 Sum_probs=45.9
Q ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHHHHHcC---CCceEEEEEeChhhHh-cCceEEEEe
Q psy832 5 KPSPFLLLDEIDAAL----DNINIWKTIQYIRTV---PKMNVIAVSLKPQFYF-HSDILFGIT 59 (80)
Q Consensus 5 ~~~~illlDEp~~~L----D~~~~~~i~~~l~~~---~~~~ii~ish~~~~~~-~~d~~~~i~ 59 (80)
.+|++++||||++++ |+..+.++.+.++++ .+.++|++||+++.+. .||+++.+.
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 478999999999998 778999999988887 4789999999988764 699988764
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.61 E-value=1.3e-07 Score=66.83 Aligned_cols=57 Identities=7% Similarity=0.047 Sum_probs=48.9
Q ss_pred CCCCEEEEeCCCCC-----CCHHHHHHHHHHHHcC--CCceEEEEEeChhhH---------hc-CceEEEEeee
Q psy832 5 KPSPFLLLDEIDAA-----LDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY---------FH-SDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~-----LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~---------~~-~d~~~~i~~~ 61 (80)
.+|+++++||||+. +|+..+..+.++++.+ .+.|+|++||+.+.+ .. ||+++.+..+
T Consensus 137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 36899999999984 5899999999999988 689999999997753 34 9999999885
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.61 E-value=2.3e-08 Score=70.61 Aligned_cols=58 Identities=9% Similarity=-0.098 Sum_probs=49.9
Q ss_pred cCCCCEEEEeCCCCCCCHH-----HHHHHHHHHHcC--CCceEEEEEeCh----------hhHh-cCceEEEEeeec
Q psy832 4 YKPSPFLLLDEIDAALDNI-----NIWKTIQYIRTV--PKMNVIAVSLKP----------QFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~-----~~~~i~~~l~~~--~~~~ii~ish~~----------~~~~-~~d~~~~i~~~~ 62 (80)
..+|+++|+| ||++||.. .+..+.++++.+ .+.++|++||+. ..+. .||+++.++.+.
T Consensus 369 ~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 369 DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 3689999999 99999999 899998888877 789999999987 5444 699999888763
No 89
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.60 E-value=1.3e-08 Score=75.40 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=44.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHcC---CCceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKT-IQYIRTV---PKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i-~~~l~~~---~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
+.+|+++|||||++|+|+.....+ ...++.+ .+.++|++||+.+....||++..+..+
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANV 745 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEE
Confidence 578999999999999998776665 4566665 388999999998877677765444443
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.58 E-value=7.6e-08 Score=72.92 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=44.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHH-HHHHHHHHcC--C-CceEEEEEeChhhHh-cCceEEEE
Q psy832 4 YKPSPFLLLDEIDAALDNINI-WKTIQYIRTV--P-KMNVIAVSLKPQFYF-HSDILFGI 58 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~-~~i~~~l~~~--~-~~~ii~ish~~~~~~-~~d~~~~i 58 (80)
+.+|+++|||||++|+|+... ..++..++.+ . +.++|++||+.+... .+|++..+
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR 925 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee
Confidence 578999999999999999884 4466777776 4 889999999988875 47776544
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.56 E-value=4.1e-08 Score=61.44 Aligned_cols=58 Identities=9% Similarity=0.160 Sum_probs=41.8
Q ss_pred cCCCCEEEEeCCCCCCCHHH------------HHHHHHHHHcC---CCceEEEEEe----ChhhHh-cCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNIN------------IWKTIQYIRTV---PKMNVIAVSL----KPQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~------------~~~i~~~l~~~---~~~~ii~ish----~~~~~~-~~d~~~~i~~~ 61 (80)
..+|+++++|||++++|+.. ..++++.|.++ .+.++|++|| +...+. .||+++.++++
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 45899999999999998841 23566666665 4899999999 444454 59999999886
No 92
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.4e-08 Score=71.19 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=47.2
Q ss_pred cCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHcCCCceEEEEEeChh------hH-hcCce-----EEEEe-eeccCC
Q psy832 4 YKPSPF----LLLDE-IDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQ------FY-FHSDI-----LFGIT-LKMLGS 65 (80)
Q Consensus 4 ~~~~~i----lllDE-p~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~------~~-~~~d~-----~~~i~-~~~~~~ 65 (80)
+.+|++ +|||| ||++||+. ...+.+.+++. +.++|+|+|+.. .. ..||+ ++.+. +|++..
T Consensus 253 ~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~-~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv~ 330 (460)
T 2npi_A 253 HLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL-NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSA 330 (460)
T ss_dssp HHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT-TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCCC
T ss_pred ccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh-CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEEE
Confidence 357889 99999 99999999 66666666654 567999999866 33 46999 99998 665333
Q ss_pred cc
Q psy832 66 LT 67 (80)
Q Consensus 66 ~~ 67 (80)
+.
T Consensus 331 g~ 332 (460)
T 2npi_A 331 VD 332 (460)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 93
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.42 E-value=5.3e-07 Score=56.02 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCCHHH--------HHHHHHHHHcC---CCceEEEEEeChh--------------hHhcCceEEEEee
Q psy832 6 PSPFLLLDEIDAALDNIN--------IWKTIQYIRTV---PKMNVIAVSLKPQ--------------FYFHSDILFGITL 60 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~--------~~~i~~~l~~~---~~~~ii~ish~~~--------------~~~~~d~~~~i~~ 60 (80)
+|+++++|||++.+|+.. ..++++.|+++ .+.++|+++|... ....||.++.++.
T Consensus 105 ~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 599999999999998732 24455556665 3889999999643 2346999999987
Q ss_pred e
Q psy832 61 K 61 (80)
Q Consensus 61 ~ 61 (80)
.
T Consensus 185 ~ 185 (220)
T 2cvh_A 185 L 185 (220)
T ss_dssp C
T ss_pred e
Confidence 6
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.31 E-value=3.1e-07 Score=67.91 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=39.9
Q ss_pred cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHcCCCceEEEEEeChhhHhcC
Q psy832 4 YKPSPFLLLDEI---DAALDNINI-WKTIQYIRTVPKMNVIAVSLKPQFYFHS 52 (80)
Q Consensus 4 ~~~~~illlDEp---~~~LD~~~~-~~i~~~l~~~~~~~ii~ish~~~~~~~~ 52 (80)
+.+|+++||||| |+++|+... ..+.+.+.+ .+.++|++||+.+....+
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALG 704 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTCC
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhh
Confidence 578999999999 999998875 467777766 688999999998776544
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.29 E-value=1.3e-06 Score=53.28 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=37.6
Q ss_pred cCCCCEEEEeCCCC-CCCHHHHHHHHHHHHcC--CCceEEEEEeCh
Q psy832 4 YKPSPFLLLDEIDA-ALDNINIWKTIQYIRTV--PKMNVIAVSLKP 46 (80)
Q Consensus 4 ~~~~~illlDEp~~-~LD~~~~~~i~~~l~~~--~~~~ii~ish~~ 46 (80)
+.+|+++++|||++ ++|+.....+.+++... .+.++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 35799999999996 89999999999988877 788999999964
No 96
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=2e-06 Score=57.04 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=38.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
..+|+++++|||++ ||+..+..+.+.+.+. .+.++|++||++.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 34788999999999 9999999999999998 8899999999854
No 97
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.20 E-value=1.6e-07 Score=63.30 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=40.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C-CceEEEEEeChhhHhcCceEEEEeee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P-KMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~-~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.++|+++++|||++. ++.+.++.+ . +.++++++|+.+....+|+++.+..|
T Consensus 238 ~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g 290 (330)
T 2pt7_A 238 RMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSS 290 (330)
T ss_dssp TSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHT
T ss_pred hhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcC
Confidence 468999999999982 345566666 4 45799999998877789999888766
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.16 E-value=9.8e-07 Score=57.42 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=34.6
Q ss_pred cCCCCEEEEeCCCC--CCCHHHH---HHHHHHHHcC---CCceEEEEEeChhh
Q psy832 4 YKPSPFLLLDEIDA--ALDNINI---WKTIQYIRTV---PKMNVIAVSLKPQF 48 (80)
Q Consensus 4 ~~~~~illlDEp~~--~LD~~~~---~~i~~~l~~~---~~~~ii~ish~~~~ 48 (80)
+.+|+++|+|||++ ++|.... .++++.|+.+ .+.++|+++|....
T Consensus 131 ~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 131 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred cCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 35799999999999 8987443 7777777776 48999999997543
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.15 E-value=6.5e-07 Score=58.53 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=37.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEE
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGI 58 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i 58 (80)
.+|+++++|||+ |+++...+++... .+.++++++|+.+....+|+++.+
T Consensus 97 ~~p~illlDEp~---D~~~~~~~l~~~~--~g~~vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 97 EDPDVIFVGEMR---DLETVETALRAAE--TGHLVFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp HCCSEEEESCCC---SHHHHHHHHHHHH--TTCEEEEEECCSSHHHHHHHHHHT
T ss_pred hCCCEEEeCCCC---CHHHHHHHHHHHc--cCCEEEEEeCcchHHHHHHHHhhh
Confidence 589999999999 9888766554322 688999999997766667766544
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.08 E-value=9.6e-07 Score=60.17 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=40.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEee
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
.++|+++++|||+ |.+....+.+... .|.++++++|+.+....+||++.+..
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~~~--~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTAAE--TGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHHHH--TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHHHh--cCCEEEEEEccChHHHHHHHHhhhcC
Confidence 4799999999999 6666555444433 58899999999888777888877644
No 101
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.97 E-value=8.7e-06 Score=51.12 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=37.6
Q ss_pred CCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHcC---CCceEEEEEeChhh-------------------Hh
Q psy832 5 KPSPFLLLDEIDAALDNI-------N-----IWKTIQYIRTV---PKMNVIAVSLKPQF-------------------YF 50 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~-------~-----~~~i~~~l~~~---~~~~ii~ish~~~~-------------------~~ 50 (80)
.+|+++++|||++.+|+. . ..+++..|+.+ .+.++|+++|.... +.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 468999999999999875 2 33455555554 48999999994321 11
Q ss_pred -cCceEEEEeee
Q psy832 51 -HSDILFGITLK 61 (80)
Q Consensus 51 -~~d~~~~i~~~ 61 (80)
.||.++.++++
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 58999999875
No 102
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.93 E-value=7.9e-06 Score=49.15 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=32.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCce-EEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMN-VIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~-ii~ish~ 45 (80)
.+|+++++|||++ ++...+..+++++... ++.+ +|++||.
T Consensus 82 ~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred hCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4689999999998 6666688888988877 5677 7888874
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.86 E-value=8e-06 Score=55.25 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=33.2
Q ss_pred CCCCEEEEeCCCCCCCHHH------------HHHHHHHHHcC---CCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALDNIN------------IWKTIQYIRTV---PKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~------------~~~i~~~l~~~---~~~~ii~ish~~ 46 (80)
.+|+++|+||||+++|+.. ..+++..|+.+ .+.++|+++|..
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~ 286 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 286 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 5899999999999999852 35555666665 489999999964
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.83 E-value=3e-05 Score=55.89 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCCCEEEEeCC------CCCCCHHHHHHHHHHHHcC----CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEI------DAALDNINIWKTIQYIRTV----PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp------~~~LD~~~~~~i~~~l~~~----~~~~ii~ish~~~ 47 (80)
..|+++++||| |++||+....++.++++++ .+..+++++|+.+
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 46899999999 9999999999999999885 3678889999754
No 105
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.65 E-value=6.6e-07 Score=62.14 Aligned_cols=52 Identities=15% Similarity=-0.001 Sum_probs=38.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C----------CceEEEEEeChhh---HhcCceEE
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-P----------KMNVIAVSLKPQF---YFHSDILF 56 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~----------~~~ii~ish~~~~---~~~~d~~~ 56 (80)
.+|++++|||||++||+..+.++.+.++++ . ..+++++||.... -..+|++.
T Consensus 183 tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 378899999999999999999988877664 1 2457778886543 33466653
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=5.9e-05 Score=47.06 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=31.3
Q ss_pred cCCCCEEEEeC--CCCCCCHHHHHHHHHHHHcCCCceEE----EEEeCh
Q psy832 4 YKPSPFLLLDE--IDAALDNINIWKTIQYIRTVPKMNVI----AVSLKP 46 (80)
Q Consensus 4 ~~~~~illlDE--p~~~LD~~~~~~i~~~l~~~~~~~ii----~ish~~ 46 (80)
..+|+++|+|| |+..+|+...+.+.+++.. ..++| .+||+.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~--~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST--PGTIILGTIPVPKGK 149 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC--SSCCEEEECCCCCSS
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC--CCcEEEEEeecCCCC
Confidence 57899999999 8888999988888877775 33344 345875
No 107
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.53 E-value=0.00012 Score=50.57 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCCCHHHH------------HHHHHHHHcC---CCceEEEEEeCh-------------------hhHh
Q psy832 5 KPSPFLLLDEIDAALDNINI------------WKTIQYIRTV---PKMNVIAVSLKP-------------------QFYF 50 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~------------~~i~~~l~~~---~~~~ii~ish~~-------------------~~~~ 50 (80)
.+|+++++|||++.++.... .++++.|+.+ .+.++|+++|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 36899999999999986543 5566777776 489999999971 1123
Q ss_pred -cCceEEEEeee
Q psy832 51 -HSDILFGITLK 61 (80)
Q Consensus 51 -~~d~~~~i~~~ 61 (80)
.+|.++.++++
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 48999988876
No 108
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00016 Score=48.05 Aligned_cols=55 Identities=11% Similarity=-0.032 Sum_probs=38.2
Q ss_pred cCCCC--EEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC---------hhhHh-cCceEEEEeeec
Q psy832 4 YKPSP--FLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK---------PQFYF-HSDILFGITLKM 62 (80)
Q Consensus 4 ~~~~~--illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~---------~~~~~-~~d~~~~i~~~~ 62 (80)
..+|+ +++|| ||+++|+..+. +.+.+..+.++|++||. .+... ....+..+..|+
T Consensus 217 ~~~P~e~lLvLD-ptsglD~~~~~---~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge 283 (302)
T 3b9q_A 217 SGAPNEILLVLD-GNTGLNMLPQA---REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 283 (302)
T ss_dssp TTCCSEEEEEEE-GGGGGGGHHHH---HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred ccCCCeeEEEEe-CCCCcCHHHHH---HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCC
Confidence 36799 99999 99999998653 22222247899999993 22332 366788787773
No 109
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.00045 Score=43.17 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHHHcC---CCceEEEEEeChhh---------HhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAAL--DNINIWKTIQYIRTV---PKMNVIAVSLKPQF---------YFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~L--D~~~~~~i~~~l~~~---~~~~ii~ish~~~~---------~~~~d~~~~i~~~ 61 (80)
+|+++++|++++.+ |+....+.+..+.+. .+.++++++|.... ...||.++.++..
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 58899999999988 554444444444444 68899999995432 3568999988764
No 110
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00045 Score=47.16 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=38.0
Q ss_pred cCCCC--EEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC---------hhhHh-cCceEEEEeee
Q psy832 4 YKPSP--FLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK---------PQFYF-HSDILFGITLK 61 (80)
Q Consensus 4 ~~~~~--illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~---------~~~~~-~~d~~~~i~~~ 61 (80)
..+|+ +|+|| ||+++|+.++.+ .+.+..+.++|++||. .+... .+..+..+..|
T Consensus 274 ~~~P~e~lLvLD-pttglD~~~~~~---~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~G 339 (359)
T 2og2_A 274 SGAPNEILLVLD-GNTGLNMLPQAR---EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 339 (359)
T ss_dssp TTCCSEEEEEEE-GGGGGGGHHHHH---HHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred hcCCCceEEEEc-CCCCCCHHHHHH---HHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCC
Confidence 36799 99999 999999987642 2222247899999993 22332 36678877776
No 111
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.87 E-value=0.00058 Score=46.50 Aligned_cols=46 Identities=7% Similarity=-0.001 Sum_probs=32.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceE
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDIL 55 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~ 55 (80)
.+|+++++|||+ |++....+++... .+.+++.++|..+....++++
T Consensus 208 ~~pd~illdE~~---d~e~~~~~l~~~~--~g~~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 208 EDPDVIFVGEMR---DLETVETALRAAE--TGHLVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHHHT--TTCEEEECCCCCSHHHHHHHH
T ss_pred hCcCEEEECCCC---CHHHHHHHHHHHh--cCCEEEEEECcchHHHHHHHH
Confidence 589999999999 7766544433321 577899999986654455554
No 112
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.68 E-value=0.00019 Score=45.68 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=28.0
Q ss_pred cCCCCEEEEe----CCCCCCCHHHHHHHHHHHHcC
Q psy832 4 YKPSPFLLLD----EIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 4 ~~~~~illlD----Ep~~~LD~~~~~~i~~~l~~~ 34 (80)
+.+|++++|| |||+++|+.+...+.+.++++
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 6799999999 999999999998888888765
No 113
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.48 E-value=0.00015 Score=50.59 Aligned_cols=46 Identities=11% Similarity=-0.117 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHcC-C-----Cc-----eEEEEEeChhhHhcCceEEEEeeec
Q psy832 16 DAALDNINIWKTIQYIRTV-P-----KM-----NVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 16 ~~~LD~~~~~~i~~~l~~~-~-----~~-----~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
|+|||+.....+.++++++ + +. +++++||+.+ ...||+++.+.+|.
T Consensus 276 t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~ 332 (438)
T 2dpy_A 276 TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGH 332 (438)
T ss_dssp SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEE
T ss_pred cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcE
Confidence 9999999999999999988 5 43 8999999987 45567766666554
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.38 E-value=0.0046 Score=39.15 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=32.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYF 50 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~ 50 (80)
..++++||| ||+....++.+.+. .+.+++++||+.+.+.
T Consensus 106 ~~G~illLD-----LD~~~~~~i~~~l~--~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 106 ATGVDVFLD-----IDWQGAQQIRQKMP--HARSIFILPPSKIELD 144 (219)
T ss_dssp TTTCEEEEE-----CCHHHHHHHHHHCT--TCEEEEEECSSHHHHH
T ss_pred hcCCeEEEE-----ECHHHHHHHHHHcc--CCEEEEEECCCHHHHH
Confidence 457899999 99999999988765 5889999999977653
No 115
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.37 E-value=0.00011 Score=49.76 Aligned_cols=46 Identities=11% Similarity=-0.062 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHcC-C---Cc-----eEEEEEeChhhHhcCceEEEEeeec
Q psy832 16 DAALDNINIWKTIQYIRTV-P---KM-----NVIAVSLKPQFYFHSDILFGITLKM 62 (80)
Q Consensus 16 ~~~LD~~~~~~i~~~l~~~-~---~~-----~ii~ish~~~~~~~~d~~~~i~~~~ 62 (80)
|+|+|+.....+.+++++. + |. +++++||+++ ...||+++.+.+|+
T Consensus 189 t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~ 243 (347)
T 2obl_A 189 RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGH 243 (347)
T ss_dssp BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEE
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcE
Confidence 8999999999999999988 4 55 8999999987 55689888887776
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.31 E-value=0.0074 Score=39.81 Aligned_cols=37 Identities=5% Similarity=0.055 Sum_probs=26.0
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHHHHcCCCceEEEEEeCh
Q psy832 9 FLLLDEIDAA-LDNINIWKTIQYIRTVPKMNVIAVSLKP 46 (80)
Q Consensus 9 illlDEp~~~-LD~~~~~~i~~~l~~~~~~~ii~ish~~ 46 (80)
++++||||++ ||+... ++++.+....+.++|+++||.
T Consensus 130 ll~ldePt~~~Ld~~~~-~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV-AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp EEEEECSSSSSCCHHHH-HHHHHHTTTSCEEEEECCGGG
T ss_pred eeeeecCcccCCCHHHH-HHHHHHHhcCCEEEEEEeCCC
Confidence 9999999985 999874 333333221367888888985
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.25 E-value=0.00061 Score=45.89 Aligned_cols=52 Identities=10% Similarity=-0.034 Sum_probs=35.8
Q ss_pred CCCCEEEEeC---CC------CCCCHHHHHHHHHHHHcC-C--CceEEEEEeChhhHhcCceEE
Q psy832 5 KPSPFLLLDE---ID------AALDNINIWKTIQYIRTV-P--KMNVIAVSLKPQFYFHSDILF 56 (80)
Q Consensus 5 ~~~~illlDE---p~------~~LD~~~~~~i~~~l~~~-~--~~~ii~ish~~~~~~~~d~~~ 56 (80)
.+|++++||| |+ .++|+..+..+.+.++++ + +.++++++|.......++++.
T Consensus 276 ~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~ 339 (365)
T 1lw7_A 276 YPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKA 339 (365)
T ss_dssp SCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 4689999999 65 589999999999999776 3 889999998643334444443
No 118
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.09 E-value=2.9e-05 Score=48.12 Aligned_cols=40 Identities=10% Similarity=-0.013 Sum_probs=31.6
Q ss_pred CCCEEEEeCCCCC-------CCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAA-------LDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~-------LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
+|+++++|||+++ ||+....++.+.+++. ++.+++.++|+
T Consensus 111 ~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 111 EGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp ESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3455556899999 8999888888888764 57888888886
No 119
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.99 E-value=0.018 Score=39.84 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=42.6
Q ss_pred CCCCEEEEeCCCCCCCH--------HHHHHHHHHHHcC---CCceEEEEEe---------C--hh---------hHhcCc
Q psy832 5 KPSPFLLLDEIDAALDN--------INIWKTIQYIRTV---PKMNVIAVSL---------K--PQ---------FYFHSD 53 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~--------~~~~~i~~~l~~~---~~~~ii~ish---------~--~~---------~~~~~d 53 (80)
.+|+++++|+++..... ....++.+.|+.+ .+.++|+++| + +. ....||
T Consensus 312 ~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD 391 (454)
T 2r6a_A 312 SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDAD 391 (454)
T ss_dssp TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCS
T ss_pred cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCC
Confidence 47999999999998743 3345666677766 4889999999 2 22 233599
Q ss_pred eEEEEeeec
Q psy832 54 ILFGITLKM 62 (80)
Q Consensus 54 ~~~~i~~~~ 62 (80)
.++.++++.
T Consensus 392 ~vi~l~r~~ 400 (454)
T 2r6a_A 392 IVAFLYRDD 400 (454)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeccc
Confidence 999998864
No 120
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.94 E-value=0.0061 Score=38.49 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=44.2
Q ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHHHHcC-CCceEEEEEeC--hhhHhcCceEEEEeeec
Q psy832 5 KPSPFLLLDEIDAA--LDNINIWKTIQYIRTV-PKMNVIAVSLK--PQFYFHSDILFGITLKM 62 (80)
Q Consensus 5 ~~~~illlDEp~~~--LD~~~~~~i~~~l~~~-~~~~ii~ish~--~~~~~~~d~~~~i~~~~ 62 (80)
...+++||||...+ ++.-....+++.+.+. .+..+|++++. ..+...||.+-.+..-+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 45689999999764 3444455688888887 78888888886 34567899999888765
No 121
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.92 E-value=0.01 Score=38.69 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~ 47 (80)
.+.++++|||+++||+... ++++.+++ ..++|++.|..+
T Consensus 113 l~~lllldep~~gL~~lD~-~~l~~L~~--~~~vI~Vi~K~D 151 (270)
T 3sop_A 113 HCCLYFISPTGHSLRPLDL-EFMKHLSK--VVNIIPVIAKAD 151 (270)
T ss_dssp CEEEEEECCCSSSCCHHHH-HHHHHHHT--TSEEEEEETTGG
T ss_pred eeeeEEEecCCCcCCHHHH-HHHHHHHh--cCcEEEEEeccc
Confidence 3458999999999999873 33444443 378888888654
No 122
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.91 E-value=0.027 Score=37.97 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=36.8
Q ss_pred CCCCEEEEeCCCCCCC----------H---HHHHHHHHHHHcC------CCceEEEEEeChh----------------hH
Q psy832 5 KPSPFLLLDEIDAALD----------N---INIWKTIQYIRTV------PKMNVIAVSLKPQ----------------FY 49 (80)
Q Consensus 5 ~~~~illlDEp~~~LD----------~---~~~~~i~~~l~~~------~~~~ii~ish~~~----------------~~ 49 (80)
.+|+++++|++++.+. . ...+.+.+.++++ .+.++|+++|... .+
T Consensus 138 ~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l 217 (349)
T 2zr9_A 138 GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKAL 217 (349)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHH
T ss_pred CCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHh
Confidence 3589999999999983 2 1112233333332 4889999999421 12
Q ss_pred -hcCceEEEEeeec
Q psy832 50 -FHSDILFGITLKM 62 (80)
Q Consensus 50 -~~~d~~~~i~~~~ 62 (80)
..||.++.+++..
T Consensus 218 ~~~ad~~l~lrr~~ 231 (349)
T 2zr9_A 218 KFYASVRLDVRRIE 231 (349)
T ss_dssp HHHCSEEEEEEEEE
T ss_pred hhccceEEEEEEee
Confidence 3588888887753
No 123
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.88 E-value=0.00014 Score=48.75 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=34.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeeec-cCCcc
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLKM-LGSLT 67 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~~-~~~~~ 67 (80)
+++|++|| |++||+.+...+.. +||+...+..||++ .+.+|+ +..+.
T Consensus 213 l~~p~iLl----Ts~LD~~~~~~i~~------------ltH~~~~~~~aD~i-vl~~G~iv~~g~ 260 (305)
T 2v9p_A 213 IKAPPLLV----TSNIDVQAEDRYLY------------LHSRVQTFRFEQPC-TDESGEQPFNIT 260 (305)
T ss_dssp ECCCCEEE----EESSCSTTCGGGGG------------GTTTEEEEECCCCC-CCC---CCCCCC
T ss_pred hCCCCEEE----ECCCCHHHHHHHHH------------HhCCHHHHHhCCEE-EEeCCEEEEeCC
Confidence 57899999 99999998877641 27888877889999 888887 44443
No 124
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.85 E-value=0.00018 Score=45.32 Aligned_cols=52 Identities=10% Similarity=-0.018 Sum_probs=37.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---------CCceEEEEEeChhhH-hcCceEE
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---------PKMNVIAVSLKPQFY-FHSDILF 56 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---------~~~~ii~ish~~~~~-~~~d~~~ 56 (80)
.+|++++||||++++|..+...+.+.+... .....|+++|+.+.. ..+++++
T Consensus 144 ~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 144 KPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp ECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred eCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 478899999999999998888888777654 235677888875543 3455543
No 125
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.84 E-value=0.014 Score=40.48 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=27.6
Q ss_pred cCCCC---EEEEeCCC-CCCCHHHHHHHHHHHHcCCCceEEEEEeChh
Q psy832 4 YKPSP---FLLLDEID-AALDNINIWKTIQYIRTVPKMNVIAVSLKPQ 47 (80)
Q Consensus 4 ~~~~~---illlDEp~-~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~ 47 (80)
+.+|+ ++++|||| ++||+... .+++.+. .+..+|+|.|..+
T Consensus 134 ~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~--~~v~iIlVinK~D 178 (418)
T 2qag_C 134 MPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH--EKVNIIPLIAKAD 178 (418)
T ss_dssp CCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT--TTSEEEEEEESTT
T ss_pred ccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh--ccCcEEEEEEccc
Confidence 46788 99999999 69998874 3333333 4678888887544
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.55 E-value=0.015 Score=40.21 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=33.8
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHcC--CCceEEEEEeCh
Q psy832 6 PSPFLLLDEIDAALDN-INIWKTIQYIRTV--PKMNVIAVSLKP 46 (80)
Q Consensus 6 ~~~illlDEp~~~LD~-~~~~~i~~~l~~~--~~~~ii~ish~~ 46 (80)
++++|++||+....+. ..+..++..+... .+.++|++||++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 7899999999987764 6777888888776 678899999873
No 127
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.23 E-value=0.002 Score=39.30 Aligned_cols=30 Identities=17% Similarity=-0.136 Sum_probs=26.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~ 34 (80)
++|+.+++|||+|++|+.+..++++.+.++
T Consensus 167 ~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 167 LAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp GGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 356677899999999999999999988876
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.18 E-value=0.022 Score=37.60 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C----CceEEEEEeChhh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-P----KMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~----~~~ii~ish~~~~ 48 (80)
..|.++++||+... |......+.+.+.+. . +..+|++||++..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 35779999999987 888888888777654 3 6788999998743
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.08 E-value=0.062 Score=32.49 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=33.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
.+.++++||... +++.....+.+.+.+. .+..+|++|++..
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 567999999877 7888888888888877 6788888888654
No 130
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.78 E-value=0.05 Score=38.51 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=43.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhHhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~~~~d~~~~i~~~ 61 (80)
.-.+++|||+ +-+|.+..+..+++++++ +.|+|+++=. ......|.++.+.+.
T Consensus 414 ~~rlvvlDEA-~kmD~~~~~~~~~l~~~l-glQliiatP~-~i~p~v~~~~~~~r~ 466 (483)
T 3euj_A 414 PCRLLFLDQA-ARLDAMSINTLFELCERL-DMQLLIAAPE-NISPERGTTYKLVRK 466 (483)
T ss_dssp CCCEEEESSG-GGSCHHHHHHHHHHHHHT-TCEEEEEESS-SCCCSSSEEEECCEE
T ss_pred ceeEEEEecc-ccCCHHHHHHHHHHHHHc-CCEEEEECcc-hhhhccCceEEEEEe
Confidence 3468999999 999999999999999974 6788888876 444568888887664
No 131
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.37 E-value=0.061 Score=33.95 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=26.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeCh
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKP 46 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~ 46 (80)
+.+|+++|+|||+...+.. +.++.+.+++++||+.
T Consensus 131 ~~~~~~lilDg~~~~~~~~--------l~~~~~~~i~v~th~~ 165 (245)
T 2jeo_A 131 VYPADVVLFEGILVFYSQE--------IRDMFHLRLFVDTDSD 165 (245)
T ss_dssp ECCCSEEEEECTTTTTSHH--------HHTTCSEEEEEECCHH
T ss_pred ecCCCEEEEeCccccccHH--------HHHhcCeEEEEECCHH
Confidence 3578999999999888753 2333467999999963
No 132
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.86 E-value=0.14 Score=33.66 Aligned_cols=40 Identities=10% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEI-DAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp-~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+++++|+|+| +.++|.....++.+..+.. ...+++++..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~ 220 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 220 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence 47899999999 9999998888887777655 4545555543
No 133
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.18 E-value=0.082 Score=35.09 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=25.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhh
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQF 48 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~ 48 (80)
+.+|+++|+|||++.+|+.. ..+.+.-+ ..|+++|+.+.
T Consensus 192 ~~~p~ilIlDep~~~~d~~~-----~~l~~~~D-~~I~V~a~~~~ 230 (312)
T 3aez_A 192 VRHPDILILEGLNVLQTGPT-----LMVSDLFD-FSLYVDARIED 230 (312)
T ss_dssp ECSCSEEEEECTTTTCCCSS-----CCGGGGCS-EEEEEEECHHH
T ss_pred ccCCCEEEECCccccCCcch-----HHHHHhcC-cEEEEECCHHH
Confidence 46899999999999997521 01222223 45777776544
No 134
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.12 E-value=0.14 Score=36.06 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=27.3
Q ss_pred CCCCEEEEeCCCC----------CCCHHHHHHHHHHHHcC------CCceEEEEEeChhh
Q psy832 5 KPSPFLLLDEIDA----------ALDNINIWKTIQYIRTV------PKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlDEp~~----------~LD~~~~~~i~~~l~~~------~~~~ii~ish~~~~ 48 (80)
..|.++++||+.+ +.|......+.+++..+ .+..+|.+||+++.
T Consensus 107 ~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence 4688999999965 44554444444444432 35678888998654
No 135
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.01 E-value=0.099 Score=38.72 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=32.5
Q ss_pred cCCCCEEEEeCCCC-CCCHHHHHHHHHHHHcC-CCceEEEE--EeChhhH
Q psy832 4 YKPSPFLLLDEIDA-ALDNINIWKTIQYIRTV-PKMNVIAV--SLKPQFY 49 (80)
Q Consensus 4 ~~~~~illlDEp~~-~LD~~~~~~i~~~l~~~-~~~~ii~i--sh~~~~~ 49 (80)
+.+++++|+|||+. ++|......+++.+... .+.++|+. ||+.+.+
T Consensus 206 l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l 255 (773)
T 2xau_A 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKF 255 (773)
T ss_dssp CTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHH
T ss_pred ccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHH
Confidence 56889999999997 99988776666666554 44455544 6775543
No 136
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.95 E-value=0.32 Score=31.57 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=32.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
++.++++|| ...+++.....+.+.+.+. .+..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 456999999 5678888889999999887 6667888887643
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.63 E-value=0.11 Score=33.91 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 6 PSPFLLLDEIDAALD---NINIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 6 ~~~illlDEp~~~LD---~~~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
.|.++++||+....+ ......+.+.+... .+..+|++||+...
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 378999999998763 44555555666543 46788999997653
No 138
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.55 E-value=0.26 Score=32.09 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCCCEEEEeCCCCCC-CHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAAL-DNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~L-D~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
.+++++++||+..-- +...+..+...+... .+..+|++++.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 458999999997743 336777888888776 56778887764
No 139
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.25 E-value=0.43 Score=32.04 Aligned_cols=44 Identities=16% Similarity=0.056 Sum_probs=35.6
Q ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 5 KPSPFLLLDEIDAALD---NINIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlDEp~~~LD---~~~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
..|.++++||...-++ +.....+.+.+++. .+..++++||.+.-
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 3578999999999995 66777777788877 58899999998643
No 140
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.15 E-value=0.43 Score=29.72 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=27.9
Q ss_pred cCCCCEEEEeCCCC-CCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDA-ALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~-~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+++-+++|+||+.. ++|.......++.+... .+.++++.|=
T Consensus 174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SA 216 (235)
T 3llm_A 174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSA 216 (235)
T ss_dssp CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 56779999999987 58777665444444444 5566666653
No 141
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=90.12 E-value=0.17 Score=36.07 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCC-EEEEeCCCCCCCHHHHHHHHHHHH---cC---CCceEEEEEeChh
Q psy832 6 PSP-FLLLDEIDAALDNINIWKTIQYIR---TV---PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~-illlDEp~~~LD~~~~~~i~~~l~---~~---~~~~ii~ish~~~ 47 (80)
.|. ++++||+.+.++.. ..++.+.+. +. .|.++|++||++.
T Consensus 296 lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 455 79999999988732 233333333 33 3889999999976
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.61 E-value=0.87 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
++.++++||... ++......+.+.+.+. .+..+|++|++..
T Consensus 119 ~~~vliiDe~~~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGGG-SCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcch-hcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 467999999754 6888888898998877 6778888887644
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.33 E-value=1 Score=26.71 Aligned_cols=42 Identities=19% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
.++.++++||... +++.....+...+... .+..+|++|....
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 4678999999765 6777788888888877 6777888887643
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.96 E-value=0.0043 Score=38.31 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=32.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceEEEE
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGI 58 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~~~i 58 (80)
.+|++++|||+++++|.++.+.+.+.|... .+ +.++|. . ..+|+++..
T Consensus 123 ~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~~--~-~~~D~iivn 171 (198)
T 1lvg_A 123 QPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSKE--P-GLFDLVIIN 171 (198)
T ss_dssp ECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGGS--T-TTCSEEEEC
T ss_pred eCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhhc--c-CCceEEEEC
Confidence 567788889999999998888888877665 32 122341 1 456776644
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.65 E-value=2.1 Score=27.21 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=30.5
Q ss_pred CCCEEEEeCCCCCC--------CHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAAL--------DNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~L--------D~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+.++++||...-. +......+.+.+.+. .+..+|+++..
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 46799999998543 677778888888776 67778888864
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.50 E-value=1.1 Score=25.81 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=32.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
+..++++||.. .|++..+..+.+.+... .+..+|++|..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 45689999997 57899999999999776 67788888875
No 147
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.00 E-value=0.23 Score=32.62 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCCEEEEeCCCCCCCHH
Q psy832 6 PSPFLLLDEIDAALDNI 22 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~ 22 (80)
+|+++|+||+++++|+.
T Consensus 152 ~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 152 PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SCSEEEEEESSTTCCCC
T ss_pred CCCEEEEeCccccCCcc
Confidence 78999999999999985
No 148
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.83 E-value=0.19 Score=35.02 Aligned_cols=41 Identities=7% Similarity=0.039 Sum_probs=34.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc-C--CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT-V--PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~-~--~~~~ii~ish~ 45 (80)
.+++++++|+|+..|.+.....+.+.+++ + .|.+++.+|.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 47899999999999999999999988886 5 68889988864
No 149
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.65 E-value=0.92 Score=29.87 Aligned_cols=42 Identities=5% Similarity=0.090 Sum_probs=33.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
.+.+++|+||+.. |.....+.+.+.+++- .+..+|++|++++
T Consensus 107 ~~~kvviIdead~-l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchhh-cCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 3568999999875 6777788888888776 6778888998764
No 150
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.26 E-value=0.78 Score=30.55 Aligned_cols=42 Identities=5% Similarity=0.029 Sum_probs=33.7
Q ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHHcC-CCceEEEEE--eCh
Q psy832 5 KPSPFLLLD-EIDAALDNINIWKTIQYIRTV-PKMNVIAVS--LKP 46 (80)
Q Consensus 5 ~~~~illlD-Ep~~~LD~~~~~~i~~~l~~~-~~~~ii~is--h~~ 46 (80)
.++-++++| ++.+++|......++..+... .+..+|++. ||.
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 455688999 999999999988888877766 577888888 553
No 151
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.98 E-value=1.6 Score=27.55 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=36.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC-----------hhhHhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK-----------PQFYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~-----------~~~~~~~d~~~~i~~~ 61 (80)
+++++++||.-- ++....+.+ ..+.. .+.++|++.|+ ..+...||++..++.-
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~i 152 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAI 152 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEE
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeeccee
Confidence 578999999974 665533332 33332 58899999992 3345579999987654
No 152
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.78 E-value=0.85 Score=27.62 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=28.4
Q ss_pred cCCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC--CCce-EEEEEeC
Q psy832 4 YKPSPFLLLDEIDAALD-NINIWKTIQYIRTV--PKMN-VIAVSLK 45 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD-~~~~~~i~~~l~~~--~~~~-ii~ish~ 45 (80)
+.++.++++||....-. ......+...+... .+.. +|++|+.
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 45689999999876533 33366777777766 3444 7777773
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.38 E-value=0.053 Score=32.61 Aligned_cols=49 Identities=8% Similarity=-0.114 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHcC--CCceEEEEEeC-hhhH-hcCceEEEEeeec-cCCcce
Q psy832 17 AALDNINIWKTIQYIRTV--PKMNVIAVSLK-PQFY-FHSDILFGITLKM-LGSLTI 68 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~--~~~~ii~ish~-~~~~-~~~d~~~~i~~~~-~~~~~~ 68 (80)
.++|+..... .+.+..+ .+.++|.+||. ++.. ..|++++ ..|+ ...++.
T Consensus 126 ~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~ 179 (189)
T 2bdt_A 126 EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAG 179 (189)
T ss_dssp ---CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---
T ss_pred ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecC
Confidence 3788888777 7777777 46788888998 6555 4689987 6666 444433
No 154
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=84.92 E-value=0.15 Score=33.69 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=22.0
Q ss_pred CCCC--EEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChh
Q psy832 5 KPSP--FLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~--illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~ 47 (80)
.+|+ ++.|| |+++. .+.+.++.+ .+.++|++||+..
T Consensus 219 ~~P~~~lLvLD-a~t~~------~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 219 EEPKEVWLVLD-AVTGQ------NGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp TCCSEEEEEEE-TTBCT------HHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCCCeEEEEEc-HHHHH------HHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4677 56666 44444 334444443 3789999999743
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.85 E-value=2 Score=27.27 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCCCEEEEeCCCCCCCH----------HHHHHHHHHHHcC-C-----CceEEEEEeChhh-----HhcCceEEEE
Q psy832 5 KPSPFLLLDEIDAALDN----------INIWKTIQYIRTV-P-----KMNVIAVSLKPQF-----YFHSDILFGI 58 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~----------~~~~~i~~~l~~~-~-----~~~ii~ish~~~~-----~~~~d~~~~i 58 (80)
..|.++++||+.+.++. .....++..+... . +..+|.+|++++. ...++..+.+
T Consensus 112 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 112 MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYV 186 (297)
T ss_dssp TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEEC
T ss_pred cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEe
Confidence 46789999999887653 2333455555544 1 2456677776432 2345555544
No 156
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.05 E-value=0.8 Score=27.44 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=30.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++++||....++......+...+... .+.++++.|=
T Consensus 144 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 185 (206)
T 1vec_A 144 VDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred cccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 3566899999999888766666666666666 5777777764
No 157
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=84.02 E-value=3.9 Score=26.33 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=39.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC-----------hhhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK-----------PQFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~-----------~~~~~~~d~~~~i~~~ 61 (80)
.+.+++++||.--..+ ..++.+.+.. .+..+|+..++ ..++..||.+..++.-
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~VtelkaI 152 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAV 152 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCEE
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeeeeE
Confidence 4568999999988864 5555555554 67889999888 3445689999887654
No 158
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.92 E-value=1.2 Score=28.85 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
+++++++||...--.......+.+++.+. .+..+|++|....
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999997543266777777888776 6778888888654
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=83.85 E-value=2.8 Score=26.65 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=32.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
.++.++++||... ++......+.+.+.+. .+..+|+++....
T Consensus 109 ~~~~vliiDe~~~-l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADA-LTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEeCCCc-CCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 4578999999764 5677788888888877 6777788776543
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.47 E-value=0.8 Score=30.03 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=28.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC----CCceEEEE--EeChhhH-hcCce
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV----PKMNVIAV--SLKPQFY-FHSDI 54 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~----~~~~ii~i--sh~~~~~-~~~d~ 54 (80)
+.+++++|+| |+++|+.....+.++.+-. ....++++ +|..+.+ ..+++
T Consensus 180 ~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~ 235 (296)
T 2px0_A 180 FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKR 235 (296)
T ss_dssp GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTT
T ss_pred hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHH
Confidence 3678999999 8899987665544433322 22234555 7774433 33443
No 161
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.25 E-value=3.7 Score=23.44 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
+..++++||.. .+++..+..+.+.+.+. .+..+|++|..
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 45789999987 46888888888888765 45677887774
No 162
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=83.18 E-value=1.7 Score=28.57 Aligned_cols=41 Identities=0% Similarity=0.068 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
+.+++|+||+.. +....++.+.+.+++- .+..+|++|+++.
T Consensus 82 ~~kvviIdead~-lt~~a~naLLk~LEep~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 82 TRKYVIVHDCER-MTQQAANAFLKALEEPPEYAVIVLNTRRWH 123 (305)
T ss_dssp SSEEEEETTGGG-BCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CceEEEeccHHH-hCHHHHHHHHHHHhCCCCCeEEEEEECChH
Confidence 457999999975 5777788899999887 7888888888764
No 163
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.47 E-value=0.49 Score=28.49 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=23.6
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHH-HHHHcC--CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAA-LDNINIWKTI-QYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~-LD~~~~~~i~-~~l~~~--~~~~ii~ish~ 45 (80)
.+++++++||+... ++...+.+++ .++... .+..+|++|+.
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 35689999999442 3332233343 355443 56677888774
No 164
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=82.37 E-value=2.7 Score=27.47 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+.+++++||+...+.....+.+.+++++. .+..+|+++..
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 456899999998878878888888999877 67666666654
No 165
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=81.92 E-value=1.6 Score=26.42 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=29.4
Q ss_pred cCCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALD-NINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD-~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+-.++++||....++ ......+...++.. .+.++++.|=
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 198 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 198 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEe
Confidence 35668999999998886 45556666666666 6777777663
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.70 E-value=0.71 Score=29.21 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=29.3
Q ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHHHcC------CCceEEEEEeChhh
Q psy832 5 KPSPFLLLDEIDAAL----------DNINIWKTIQYIRTV------PKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlDEp~~~L----------D~~~~~~i~~~l~~~------~~~~ii~ish~~~~ 48 (80)
..|.++++||...-. +......+..++..+ .+..+|.+|+.+..
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 109 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 356799999997642 566667777776653 34567777775543
No 167
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=81.01 E-value=0.81 Score=27.34 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT 33 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~ 33 (80)
++|+++++| +|++|..+..++++.+.+
T Consensus 162 ~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 162 EKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp HHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 357788999 999999999999987754
No 168
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=80.71 E-value=3.9 Score=24.66 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChh-----------hHhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQ-----------FYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~-----------~~~~~d~~~~i~~~ 61 (80)
+.+++++||.-- +++.....+..... .+..+++..++.+ ++..||.+..+..-
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~--~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~i 139 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD--RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAV 139 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH--TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBC
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH--CCCCEEEEeeccccccCCccchHHHHHHhhheEEeeee
Confidence 567999999865 55543333322222 4788888888433 44569999877554
No 169
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.66 E-value=6.9 Score=28.58 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=29.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC------------CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV------------PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~------------~~~~ii~ish 44 (80)
++..+++|||... +.+.....+.+.+.+- .+..+|++|+
T Consensus 578 ~~~~vl~lDEi~~-~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 578 KPYSVVLLDAIEK-AHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CSSSEEEEECGGG-SCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 3567999999964 6888888999888862 3457777776
No 170
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.55 E-value=2.6 Score=26.75 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
++.++++||... +.......+.+.+.+. .+..+|++|.+..
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 378999999765 5666777788888877 6778888887643
No 171
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.33 E-value=0.6 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=29.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++|+||....++......+...+... .+.++++.|=
T Consensus 142 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 183 (207)
T 2gxq_A 142 LSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSA 183 (207)
T ss_dssp CTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECS
T ss_pred hhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEE
Confidence 3566899999999776665566666667666 6777777664
No 172
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.23 E-value=4.7 Score=25.94 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCC-------------CCCHHHHHHHHHHHHcC---CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDA-------------ALDNINIWKTIQYIRTV---PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~-------------~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~ 47 (80)
.|.++++||..+ +........++..+... .+..+|.+|++++
T Consensus 108 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 578999999864 23334456677777765 4667888888764
No 173
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.24 E-value=0.6 Score=28.98 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=29.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++|+||....++......+...++.. .+.++++.|=
T Consensus 171 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SA 212 (237)
T 3bor_A 171 PKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSA 212 (237)
T ss_dssp STTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred cccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 3456899999999776655566677777777 6777777764
No 174
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=77.39 E-value=0.68 Score=28.36 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=30.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+-.++++||...-++......+...++.. .+.++++.|=
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 206 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 206 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEES
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEe
Confidence 4566899999998777665666677777777 6777777664
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.59 E-value=1.6 Score=27.73 Aligned_cols=42 Identities=19% Similarity=0.107 Sum_probs=29.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
.++.++++||... ++......+.+.+.+. .+..+|+++....
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETGGG-SCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred CCceEEEEeCCCc-CCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 4578999999765 5666666666666555 5667777777644
No 176
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.49 E-value=5.7 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=24.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~ 34 (80)
++.++++||+.. |++.....+.+.|.+.
T Consensus 201 ~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 201 HKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp TTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred CCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 567999999998 8999999999999843
No 177
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=75.60 E-value=0.56 Score=30.81 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=23.5
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHH-HHHcC--CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDA-ALDNINIWKTIQ-YIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~-~LD~~~~~~i~~-~l~~~--~~~~ii~ish~ 45 (80)
.++++|++||... .++...+..++. ++... .+..+|++|+.
T Consensus 213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp HTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 4678999999943 344333333443 55543 45678888874
No 178
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.51 E-value=1.2 Score=29.92 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=32.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhHhcCceEEEEee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGITL 60 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~~~~d~~~~i~~ 60 (80)
..|+.+++||+..+ ++.++++.+ ...+++.++|..+....++|+..+..
T Consensus 251 ~~pd~~l~~e~r~~-------~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 251 MKPTRILLAELRGG-------EAYDFINVAASGHGGSITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp SCCSEEEESCCCST-------HHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCchHH-------HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 47889999999862 344556555 34567888998665555566554433
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.49 E-value=5.3 Score=26.00 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=31.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~~ 47 (80)
+.+++++||+.. +....+..+.+.+.+. ....+|+++....
T Consensus 110 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 110 GFKLIILDEADA-MTNAAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp SCEEEEETTGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 478999999874 5677788888888887 6777888887543
No 180
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.14 E-value=1 Score=27.39 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=29.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++++||....++......+...+... .+.++++.|=
T Consensus 153 ~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSA 194 (224)
T 1qde_A 153 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSA 194 (224)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEES
T ss_pred hhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEe
Confidence 3456899999998766655566666677666 6777777664
No 181
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=74.64 E-value=1.7 Score=28.90 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=28.0
Q ss_pred CCCCEEEEeCCCCCCCHH------------HHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNI------------NIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~------------~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+++++++|+.++..... ...+++..|+.+ .+.++|+++|-
T Consensus 218 ~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 218 GIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp SSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 568899999999876432 123444445554 47899999884
No 182
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=74.28 E-value=2.2 Score=27.96 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=27.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeCh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKP 46 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~ 46 (80)
.+++++++.|.-. |.. .++.+.++++ .+.+++++||+.
T Consensus 151 ~ad~ill~k~dl~-de~--~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 151 YADRILLTKTDVA-GEA--EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp TCSEEEEECTTTC-SCT--HHHHHHHHHHCSSSCEEECCSSC
T ss_pred hCCEEEEECcccC-CHH--HHHHHHHHHhCCCCeEEEecccC
Confidence 4567777666544 432 6777788777 789999999963
No 183
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=73.87 E-value=11 Score=23.86 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=22.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~ 34 (80)
..++++||.. .+++.....+++.+.+.
T Consensus 120 ~~vl~lDEi~-~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 120 YSVILFDAIE-KAHPDVFNILLQMLDDG 146 (311)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHHS
T ss_pred CeEEEEeChh-hcCHHHHHHHHHHHhcC
Confidence 4699999995 57899999999988764
No 184
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=73.20 E-value=0.84 Score=28.35 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=30.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+-.++++||...-+|......+...++.+ .+.++++.|=
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SA 215 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 215 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEES
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 4566899999998777655566666677766 6777777664
No 185
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.04 E-value=1.2 Score=27.42 Aligned_cols=40 Identities=25% Similarity=0.157 Sum_probs=29.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+-.++++||....++......+...++.+ .+.++++.|=
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 456799999999777665566676777777 6777776663
No 186
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=73.00 E-value=0.84 Score=27.81 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=28.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+-.++++||....++......+...++.+ .+.++++.|=
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 189 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSA 189 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEES
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEec
Confidence 456789999998776655556666667766 6777777663
No 187
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=72.88 E-value=2.4 Score=27.94 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=31.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++|+||....++......+...++.. .+.++++.|=
T Consensus 177 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 218 (410)
T 2j0s_A 177 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISA 218 (410)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEES
T ss_pred HhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEc
Confidence 3456899999999888877777777777666 6777777774
No 188
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=71.93 E-value=2 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~ 34 (80)
+.|++.++| +|++|+.+..++++.+.+.
T Consensus 138 ~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 138 EKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 346788899 9999999999999877654
No 189
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.85 E-value=7.2 Score=27.15 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=28.5
Q ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHHHcC------CCceEEEEEeChhhH
Q psy832 5 KPSPFLLLDEIDAAL----------DNINIWKTIQYIRTV------PKMNVIAVSLKPQFY 49 (80)
Q Consensus 5 ~~~~illlDEp~~~L----------D~~~~~~i~~~l~~~------~~~~ii~ish~~~~~ 49 (80)
..|.++++||..+-. |......+..+|.++ .+.-+|..|.+++.+
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 468899999998754 333344444555544 345688888876543
No 190
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=70.69 E-value=6.3 Score=26.48 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=25.9
Q ss_pred CCCCEEEEeCCCCCCCHH------------HH-HHHHHHHHcC------CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNI------------NI-WKTIQYIRTV------PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~------------~~-~~i~~~l~~~------~~~~ii~ish~ 45 (80)
.+++++|+|.+++-.... .+ +.+.+.++.+ .+.++|+++|-
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~ 199 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 199 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 468999999999877421 11 2233333332 57899999883
No 191
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=70.63 E-value=1.4 Score=27.66 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=29.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+-.++|+||....++......+...++.. .+.++++.|=
T Consensus 184 l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SA 225 (249)
T 3ber_A 184 LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 225 (249)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEES
T ss_pred ccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEec
Confidence 3456789999998766665566666677766 6677776664
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.73 E-value=5 Score=27.76 Aligned_cols=55 Identities=11% Similarity=0.202 Sum_probs=33.9
Q ss_pred CCCCEEEEeCCCCCCC----------HHHHHHHHHHHHcC------CCceEEEEEeChhh-----Hh--cCceEEEEe
Q psy832 5 KPSPFLLLDEIDAALD----------NINIWKTIQYIRTV------PKMNVIAVSLKPQF-----YF--HSDILFGIT 59 (80)
Q Consensus 5 ~~~~illlDEp~~~LD----------~~~~~~i~~~l~~~------~~~~ii~ish~~~~-----~~--~~d~~~~i~ 59 (80)
..|.++++||..+-.. ......+..+|.++ .+.-+|..|.+++. .+ ..|+.+.+.
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~ 317 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP 317 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcC
Confidence 4578999999997652 23344444555544 35567888876543 33 467777664
No 193
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=69.23 E-value=12 Score=23.22 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC------------CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV------------PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~------------~~~~ii~ish~ 45 (80)
+..++++||.. .+....+..+.+.+.+. .+..+|++|+.
T Consensus 100 ~~~~l~lDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 100 DGGTLFLDELA-TAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TTSEEEEESGG-GSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcEEEEechH-hcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 45799999987 46778888888888752 35678888875
No 194
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=67.93 E-value=1.5 Score=26.93 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=27.5
Q ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNI-NIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~-~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+-.++|+||....++.. ....+...++.+ .+.++++.|=
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSA 206 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSA 206 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEES
T ss_pred ccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEe
Confidence 345789999999877654 455555666666 5667776663
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=67.79 E-value=1.8 Score=28.36 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNI--------N----IWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~--------~----~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+++++++|+.++..... . ..+++..|+.+ .+.++|+++|-
T Consensus 202 ~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 202 PSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 568999999999876421 1 23344444444 48899999883
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=67.32 E-value=17 Score=24.50 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=34.8
Q ss_pred CCCCEEEEeCCCCCCC-H---------------HHHHHHHHHHHcC---CCceEEEEEeCh----------------hhH
Q psy832 5 KPSPFLLLDEIDAALD-N---------------INIWKTIQYIRTV---PKMNVIAVSLKP----------------QFY 49 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-~---------------~~~~~i~~~l~~~---~~~~ii~ish~~----------------~~~ 49 (80)
..++++++|+.++-.. . ....+++..|..+ .+.++|++.|-. ..+
T Consensus 138 ~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l 217 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLAL 217 (356)
T ss_dssp SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHH
T ss_pred cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchh
Confidence 4688999999877664 1 1122233334444 578999998851 113
Q ss_pred h-cCceEEEEee
Q psy832 50 F-HSDILFGITL 60 (80)
Q Consensus 50 ~-~~d~~~~i~~ 60 (80)
. .++.++.+.+
T Consensus 218 ~h~~~~rl~l~k 229 (356)
T 3hr8_A 218 KFYATMRMEVRR 229 (356)
T ss_dssp HHHCSEEEEEEE
T ss_pred hhhCcEEEEEEe
Confidence 3 5787887776
No 197
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.12 E-value=7.1 Score=25.49 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=29.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+-.++|+||....++......+...+... .+.++++.|=
T Consensus 161 ~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 202 (400)
T 1s2m_A 161 LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSA 202 (400)
T ss_dssp CTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEES
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEe
Confidence 3456899999999988877666665555555 5667776664
No 198
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.95 E-value=6 Score=25.46 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=23.9
Q ss_pred CCCCEEEEeCCCCCCCH------------HHHHHHHHHHH-----------c--C-CCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALDN------------INIWKTIQYIR-----------T--V-PKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~------------~~~~~i~~~l~-----------~--~-~~~~ii~ish~~ 46 (80)
..|.++++||..+.... .....+++.+. . . .+..+|++|.++
T Consensus 98 ~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~ 165 (293)
T 3t15_A 98 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF 165 (293)
T ss_dssp SSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC
T ss_pred CCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc
Confidence 46889999999765431 12255566653 1 1 356778888764
No 199
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=66.20 E-value=8.4 Score=23.65 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=8.8
Q ss_pred CCCEEEEeCCCCCC
Q psy832 6 PSPFLLLDEIDAAL 19 (80)
Q Consensus 6 ~~~illlDEp~~~L 19 (80)
.|.++++||...-.
T Consensus 98 ~~~vl~iDeid~l~ 111 (262)
T 2qz4_A 98 APCIVYIDEIDAVG 111 (262)
T ss_dssp CSEEEEEECC----
T ss_pred CCeEEEEeCcchhh
Confidence 47899999998753
No 200
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.05 E-value=1.6 Score=28.35 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=28.6
Q ss_pred cCCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALD-NINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD-~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+-.++|+||...-+| ......+...++.+ .+.++++.|=
T Consensus 233 l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SA 275 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSA 275 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEES
T ss_pred hhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEec
Confidence 34568999999998776 44555555555555 6777777764
No 201
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=65.88 E-value=17 Score=24.82 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred CCCCEEEEeCCCCCCCH----------HHHHHHHHHHHcC---CCceEEEEEeC-----------hh---------hHhc
Q psy832 5 KPSPFLLLDEIDAALDN----------INIWKTIQYIRTV---PKMNVIAVSLK-----------PQ---------FYFH 51 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~----------~~~~~i~~~l~~~---~~~~ii~ish~-----------~~---------~~~~ 51 (80)
.+++++++|....-... ....++.+.|+.+ .+.++|+++|- +. ....
T Consensus 309 ~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~ 388 (444)
T 2q6t_A 309 NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQD 388 (444)
T ss_dssp SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGG
T ss_pred cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHh
Confidence 36899999999876543 1124555666666 48899999982 11 1235
Q ss_pred CceEEEEeeec
Q psy832 52 SDILFGITLKM 62 (80)
Q Consensus 52 ~d~~~~i~~~~ 62 (80)
||.++.+++..
T Consensus 389 aD~vi~L~r~~ 399 (444)
T 2q6t_A 389 ADLVMFIYRDE 399 (444)
T ss_dssp CSEEEEEEEGG
T ss_pred CCEEEEEeccc
Confidence 89999998763
No 202
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=65.57 E-value=20 Score=21.79 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=34.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC-----------hhhHhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK-----------PQFYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~-----------~~~~~~~d~~~~i~~~ 61 (80)
+.+++++||.-- ++++.... ++.+.. .+..+|+..++ ..++..||.+..+..-
T Consensus 81 ~~dvViIDEaqf-l~~~~v~~-l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~i 144 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEIVEI-VNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQAI 144 (191)
T ss_dssp TCSEEEECSGGG-SCTHHHHH-HHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCEE
T ss_pred cCCEEEEECCCC-CCHHHHHH-HHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeeeeE
Confidence 368999999655 66554332 222222 57888988874 3445689999877543
No 203
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=65.52 E-value=4.7 Score=27.26 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=30.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
+.+-.++++||....+|......+...+... .+.++++.|=
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SA 244 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSA 244 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEES
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEec
Confidence 4566899999999999887777777777664 4566666663
No 204
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=65.34 E-value=0.71 Score=30.85 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=20.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
+++++++|.++. ..+.+.++.+ .+.+.|++||.
T Consensus 243 de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 243 NLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp SEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECG
T ss_pred CCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 456677775443 2333333333 47889999994
No 205
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=65.08 E-value=4.6 Score=28.31 Aligned_cols=42 Identities=17% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCCEEEEeCCCC----------CCCHHHHHHHHHHHHcC---CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDA----------ALDNINIWKTIQYIRTV---PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~----------~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~ 47 (80)
.|.++++||..+ .+......+++..+... .+..+|.+|++++
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 467999999842 23345566677777765 3556666777653
No 206
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.97 E-value=2.6 Score=25.96 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=28.1
Q ss_pred cCCCCEEEEeCCCCCCC---HHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALD---NINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD---~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
+.+-.++|+||...-++ ......+...+... .+.++++.|=
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SA 218 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSA 218 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEES
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEec
Confidence 45667899999998776 34566666777665 4566666663
No 207
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=64.60 E-value=18 Score=23.33 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=31.2
Q ss_pred CCCCEEEEeCCCCCCC----------HHHHHHHHHHHHcC----CCceEEEEEeChhh-----HhcCceEEEE
Q psy832 5 KPSPFLLLDEIDAALD----------NINIWKTIQYIRTV----PKMNVIAVSLKPQF-----YFHSDILFGI 58 (80)
Q Consensus 5 ~~~~illlDEp~~~LD----------~~~~~~i~~~l~~~----~~~~ii~ish~~~~-----~~~~d~~~~i 58 (80)
..|.++++||..+-.. ......++..+... .+..+|.+|..+.. ....++.+.+
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~ 181 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 181 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEEC
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEe
Confidence 3578999999986543 23345555555543 34455666765433 2345555544
No 208
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=63.47 E-value=1.7 Score=27.42 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=28.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+++-.++|+||...-+|......+...++.. ...++++.|=
T Consensus 199 ~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SA 240 (262)
T 3ly5_A 199 YKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 240 (262)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECS
T ss_pred cccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEe
Confidence 4566899999998777655566666666666 6667776653
No 209
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=63.44 E-value=16 Score=24.07 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCCCEEEEeCCCCCCCH----------HHHHHHHHHHHcC----CCceEEEEEeChh-----hHhcCceEEEE
Q psy832 5 KPSPFLLLDEIDAALDN----------INIWKTIQYIRTV----PKMNVIAVSLKPQ-----FYFHSDILFGI 58 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~----------~~~~~i~~~l~~~----~~~~ii~ish~~~-----~~~~~d~~~~i 58 (80)
..|.++++||..+-... .....++..+... .+..+|.+|..++ +...+++.+.+
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 214 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 214 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEEC
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEe
Confidence 36789999999865432 2244455555543 3455666777553 23346666554
No 210
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=63.30 E-value=12 Score=24.22 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=24.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEe
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSL 44 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish 44 (80)
|.++++||... |++.....+.+.+.+.....+++.+.
T Consensus 190 ~~vl~IDEi~~-l~~~~~~~L~~~le~~~~~~~ii~t~ 226 (368)
T 3uk6_A 190 PGVLFIDEVHM-LDIESFSFLNRALESDMAPVLIMATN 226 (368)
T ss_dssp BCEEEEESGGG-SBHHHHHHHHHHTTCTTCCEEEEEES
T ss_pred CceEEEhhccc-cChHHHHHHHHHhhCcCCCeeeeecc
Confidence 67999999974 67777777776665542234454554
No 211
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=62.58 E-value=10 Score=24.53 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=29.3
Q ss_pred cCCCCEEEEeCCCCCCCH-HHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDN-INIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~-~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++|+||....++. .....+...+... .+.++++.|=
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 192 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 192 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEe
Confidence 356688999999988874 5555555566655 6777777774
No 212
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=62.27 E-value=17 Score=19.73 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=25.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|- ..+ .....+++.+++. .+..+|++|..
T Consensus 47 ~~~dlvi~d~-~~~---~~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 47 EKIDLVFVDV-FEG---EESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp SCCSEEEEEC-TTT---HHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred cCCCEEEEeC-CCC---CcHHHHHHHHHHHCCCCCEEEEECC
Confidence 4689999997 433 3445666777766 66777777754
No 213
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=62.23 E-value=3.6 Score=26.33 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=30.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++|+||.....+......+...+... .+..+++.|=
T Consensus 145 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 186 (367)
T 1hv8_A 145 LKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSA 186 (367)
T ss_dssp TTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECS
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEee
Confidence 3456899999998877766666777777766 6777777764
No 214
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.64 E-value=21 Score=22.54 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=23.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~ 34 (80)
+.++.++++||.. .++......+...+.+.
T Consensus 88 ~~~~~~l~lDEi~-~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 88 LEEGDILFIDEIH-RLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CCTTCEEEETTTT-SCCHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEECCc-ccccchHHHHHHHHHhh
Confidence 4578899999986 56777788888887753
No 215
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=59.60 E-value=22 Score=25.80 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=28.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~ 48 (80)
.+..++++| |+.++++.+...+ +.+.. .+..+|++.|+.+.
T Consensus 98 ad~~ilVvD-~~~g~~~qt~~~~-~~~~~-~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 98 ADAALVAVS-AEAGVQVGTERAW-TVAER-LGLPRMVVVTKLDK 138 (665)
T ss_dssp CSEEEEEEE-TTTCSCHHHHHHH-HHHHH-TTCCEEEEEECGGG
T ss_pred cCcEEEEEc-CCcccchhHHHHH-HHHHH-ccCCEEEEecCCch
Confidence 456788899 9999998877443 33332 46778888887654
No 216
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=59.49 E-value=2.6 Score=26.01 Aligned_cols=42 Identities=14% Similarity=0.371 Sum_probs=27.2
Q ss_pred CCEEEEeCCCCCCCHH----HHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 7 SPFLLLDEIDAALDNI----NIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 7 ~~illlDEp~~~LD~~----~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
..++++||.-.-+.+. ...+++..+... .+.++|++|+.+..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~ 135 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKL 135 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGG
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHH
Confidence 7899999987654221 112344444444 67899999997544
No 217
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=59.41 E-value=12 Score=24.55 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=29.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++|+||.....+......+...+... ....++..|=
T Consensus 123 ~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp TTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred hhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 3566899999999888765666666666655 5556666663
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=59.07 E-value=33 Score=22.09 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=29.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC------------CCceEEEEEeC
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV------------PKMNVIAVSLK 45 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~------------~~~~ii~ish~ 45 (80)
..++++||... +....+..+++.+.+. .+..+|.+|+.
T Consensus 97 ~g~L~LDEi~~-l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 97 GGTLFLDEIGD-ISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TSEEEEESCTT-CCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCEEEEecccc-CCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 46899999875 6778888888888764 13678888885
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.76 E-value=11 Score=26.48 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=28.6
Q ss_pred CCCCEEEEeCCCCCCC----------HHHHHHHHHHHHcC------CCceEEEEEeChhhH
Q psy832 5 KPSPFLLLDEIDAALD----------NINIWKTIQYIRTV------PKMNVIAVSLKPQFY 49 (80)
Q Consensus 5 ~~~~illlDEp~~~LD----------~~~~~~i~~~l~~~------~~~~ii~ish~~~~~ 49 (80)
..|.++++||..+-.. ......+..+|.++ .+.-+|..|.+++.+
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 3578999999987552 23344455555544 345678888876553
No 220
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=58.14 E-value=32 Score=21.61 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=35.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC-----------hhhHhcCceEEEEeee
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK-----------PQFYFHSDILFGITLK 61 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~-----------~~~~~~~d~~~~i~~~ 61 (80)
+.+++++||.-- ++++.. ++++.+.. .+..+|+..++ +.++..||.+..++.-
T Consensus 101 ~~dvViIDEaQF-~~~~~V-~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ai 164 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV-EVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAV 164 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH-HHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCCB
T ss_pred CCCEEEEECccc-CCHHHH-HHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeeeeE
Confidence 368999999976 776554 22333222 58889998883 2345689999887654
No 221
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=57.86 E-value=21 Score=19.50 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~ 46 (80)
..|+++|+|-...+.|. ..+++.+++. .+..+|++|-..
T Consensus 48 ~~~dlvllD~~lp~~~g---~~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDG---IELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHHCTTCEEEEECCST
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCCCcEEEEeCCC
Confidence 36899999987766664 3455666655 667778777643
No 222
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=57.52 E-value=19 Score=23.84 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=25.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH--cC--CCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIR--TV--PKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~--~~--~~~~ii~ish~~ 46 (80)
..+.+++|||...-.+ +..+..+++ .. ....+|.|+...
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCc
Confidence 3567999999998773 344444543 12 356778888764
No 223
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=57.35 E-value=21 Score=19.30 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=26.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc--C-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT--V-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~--~-~~~~ii~ish~ 45 (80)
.+|+++|+|--.. +......+++.+++ . .+..+|++|-.
T Consensus 49 ~~~dlvi~D~~l~--~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 49 DSITLIIMDIAFP--VEKEGLEVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp CCCSEEEECSCSS--SHHHHHHHHHHHHHSGGGTTCCEEEEESC
T ss_pred CCCcEEEEeCCCC--CCCcHHHHHHHHHhCcccCCCCEEEEeCC
Confidence 5689999995433 04556677788887 4 67777777754
No 224
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=57.21 E-value=22 Score=19.58 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=27.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~ 46 (80)
..|+++|+|-...+.|. ..+++.+++. ....+|++|...
T Consensus 50 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 50 TSVQLVISDMRMPEMGG---EVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp SCCSEEEEESSCSSSCH---HHHHHHHHHHCTTSEEEEEECGG
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHHhCCCCcEEEEecCC
Confidence 36899999987777664 3455666665 667788877643
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=56.62 E-value=21 Score=24.72 Aligned_cols=39 Identities=5% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCCCEEEEeCCC-CC--CCHHHHHHHHHHHHcC-CCceEEEEE
Q psy832 5 KPSPFLLLDEID-AA--LDNINIWKTIQYIRTV-PKMNVIAVS 43 (80)
Q Consensus 5 ~~~~illlDEp~-~~--LD~~~~~~i~~~l~~~-~~~~ii~is 43 (80)
.+++++|+|+|. .+ .|+....++....+.. ...++++++
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlD 220 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVID 220 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEe
Confidence 478999999997 45 7888888877766655 444444444
No 226
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=55.68 E-value=19 Score=21.52 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=24.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 9 FLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 9 illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
.+|.| ++..+.....+.+.+++. .....|++||
T Consensus 34 ~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH 68 (227)
T 3iog_A 34 VTVVG---ATWTPDTARELHKLIKRVSRKPVLEVINTN 68 (227)
T ss_dssp EEEES---CCSSHHHHHHHHHHHHTTCCSCEEEEECSS
T ss_pred EEEEE---CCCChHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 45555 456677788888889886 5667899999
No 227
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=55.51 E-value=8.6 Score=21.87 Aligned_cols=43 Identities=7% Similarity=0.197 Sum_probs=23.0
Q ss_pred CCCCEEEEeCCCCCCCHHH---HHHHHHHHHcC---CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEIDAALDNIN---IWKTIQYIRTV---PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~---~~~i~~~l~~~---~~~~ii~ish~~~ 47 (80)
..+.++++||......... ...+.+.+... .+..+|++|....
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 3456999999977553211 11122233332 4567777777543
No 228
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.49 E-value=27 Score=19.89 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=26.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+.+++++.+|...+.....+.+.+++... .. +++++.|
T Consensus 74 F~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~-~~lvi~~ 114 (140)
T 1jql_B 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDD-LLLIVRG 114 (140)
T ss_dssp TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSS-CCEEEEC
T ss_pred CCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCC-EEEEEEe
Confidence 3456788888887767666677777777766 44 4444444
No 229
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=55.10 E-value=3.2 Score=27.22 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=29.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+-.++|+||....++......+...+..+ .+.++++.|=
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 222 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSA 222 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECS
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 446799999999866655566777777777 6777777774
No 230
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=54.82 E-value=16 Score=25.00 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEE
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVS 43 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~is 43 (80)
|+++++||... |+.+....+.+.+.+. .. .+|+.|
T Consensus 296 ~~VliIDEa~~-l~~~a~~aLlk~lEe~~~~-~~il~t 331 (456)
T 2c9o_A 296 PGVLFVDEVHM-LDIECFTYLHRALESSIAP-IVIFAS 331 (456)
T ss_dssp ECEEEEESGGG-CBHHHHHHHHHHTTSTTCC-EEEEEE
T ss_pred ceEEEEechhh-cCHHHHHHHHHHhhccCCC-EEEEec
Confidence 47999999985 6888888888777766 44 555566
No 231
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=54.73 E-value=14 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=24.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
..+|.| ++.++.....+.+.+++. .....|++||
T Consensus 36 ~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH 71 (233)
T 3q6v_A 36 GITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTN 71 (233)
T ss_dssp CEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSS
T ss_pred eEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 345555 566677777888888776 5677899998
No 232
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=54.42 E-value=5.2 Score=25.88 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=25.6
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHcC------CCceEEEEEeCh
Q psy832 6 PSPFLLLDEIDAALDNI-NIWKTIQYIRTV------PKMNVIAVSLKP 46 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~-~~~~i~~~l~~~------~~~~ii~ish~~ 46 (80)
.+.++++||.....+.. ....+..+++.. .+..+|++|++.
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 46699999998764332 445555555533 145788888865
No 233
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=54.07 E-value=4.3 Score=25.09 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=28.3
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---C--CceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---P--KMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~--~~~ii~ish 44 (80)
+.+-.++|+||...-+|......+...+... . +.++++.|=
T Consensus 172 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SA 217 (253)
T 1wrb_A 172 LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSA 217 (253)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEES
T ss_pred hhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEE
Confidence 3455799999999877665566666777743 2 566777664
No 234
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=53.98 E-value=22 Score=18.52 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.|+++++|--..+.|. ..+++.+++. .+..+|++|..
T Consensus 47 ~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 47 KPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp CCSEEEEECSCGGGCH---HHHHHHHHHHCTTCCEEEEECT
T ss_pred CCCEEEEeCCCCCCcH---HHHHHHHHhhCCCCeEEEEeCC
Confidence 5899999976655553 3455666655 56677777764
No 235
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=53.84 E-value=23 Score=18.72 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=26.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. ..+++.+++. .+..+|++|..
T Consensus 46 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 46 VRNGVLVTDLRMPDMSG---VELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp CCSEEEEEECCSTTSCH---HHHHHHHHHTTCCCCEEEEECT
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhcCCCCCEEEEECC
Confidence 46889999976666664 3456666766 66677777764
No 236
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=53.21 E-value=28 Score=23.24 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=6.6
Q ss_pred CCCEEEEeCCCC
Q psy832 6 PSPFLLLDEIDA 17 (80)
Q Consensus 6 ~~~illlDEp~~ 17 (80)
++++++.|+|..
T Consensus 127 ~~~l~I~d~~~~ 138 (338)
T 4a1f_A 127 QKKLFFYDKSYV 138 (338)
T ss_dssp HSCEEEECCTTC
T ss_pred cCCeEEeCCCCC
Confidence 345666666543
No 237
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.92 E-value=11 Score=23.95 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.0
Q ss_pred cCCCCEEEEeCCCCC
Q psy832 4 YKPSPFLLLDEIDAA 18 (80)
Q Consensus 4 ~~~~~illlDEp~~~ 18 (80)
+.+.++++|||++..
T Consensus 101 l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 101 LTDTKVAMLDDATTT 115 (212)
T ss_dssp GTTCSSEEEEEECHH
T ss_pred cCCCCEEEEECCCch
Confidence 457889999999854
No 238
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=52.79 E-value=37 Score=22.84 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHcC------CCceEEEEEeChh-----------------h
Q psy832 5 KPSPFLLLDEIDAALD-N------------INIWKTIQYIRTV------PKMNVIAVSLKPQ-----------------F 48 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-~------------~~~~~i~~~l~~~------~~~~ii~ish~~~-----------------~ 48 (80)
.+++++|+|..++-.- . ...+.+.+.++.+ .+.++|+++|-.. +
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al 230 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRAL 230 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHH
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchh
Confidence 4689999999987652 1 1112233333332 5788999888321 0
Q ss_pred HhcCceEEEEeee
Q psy832 49 YFHSDILFGITLK 61 (80)
Q Consensus 49 ~~~~d~~~~i~~~ 61 (80)
...++.++.+++.
T Consensus 231 ~~~a~~rl~L~r~ 243 (366)
T 1xp8_A 231 KFYASVRLDVRKI 243 (366)
T ss_dssp HHHCSEEEEEEEE
T ss_pred hheeeEEEEEEec
Confidence 1247777777765
No 239
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=52.16 E-value=20 Score=19.34 Aligned_cols=38 Identities=3% Similarity=-0.057 Sum_probs=25.8
Q ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAA--LDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~--LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++|+|--..+ . ....+++.+++. .+..+|++|..
T Consensus 49 ~~~dlvi~D~~l~~~~~---~g~~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKD---SGIELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp TTEEEEEEETTGGGBTT---HHHHHHHHHHHTTCCCCEEEEESS
T ss_pred cCCCEEEEeCcCCCCCc---cHHHHHHHHHhCCCCCCEEEEEcC
Confidence 45789999965443 3 345566777776 66777777764
No 240
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=52.01 E-value=28 Score=19.14 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=26.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.|. ..+++.+++. ....+|++|..
T Consensus 50 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 50 TTPDIVVMDLTLPGPGG---IEATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp TCCSEEEECSCCSSSCH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHHhCCCCeEEEEECC
Confidence 35899999987766653 3456666665 56677777754
No 241
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=51.79 E-value=26 Score=18.65 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++|+|-...+.|. ..+++.+++. .+..+|++|..
T Consensus 45 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNG---IQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTTCCSEEEEEECC
T ss_pred cCCCEEEEecCCCCCCh---HHHHHHHHhcCCCCeEEEEeCC
Confidence 36899999987777663 3456666766 66777877764
No 242
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=50.98 E-value=26 Score=18.57 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++|+|-...+.| ...+++.+++. .+..+|++|-.
T Consensus 50 ~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 50 FTPDLMICDIAMPRMN---GLKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp CCCSEEEECCC--------CHHHHHHHHHTTCCCCEEEEECC
T ss_pred CCCCEEEEecCCCCCC---HHHHHHHHHhcCCCCCEEEEEcC
Confidence 4689999996554433 34556666766 56667777753
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.93 E-value=28 Score=25.88 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCCEEEEeCCCCCCC----------HHHHHHHHHHHHcC---CCceEEEEEeChhh
Q psy832 6 PSPFLLLDEIDAALD----------NINIWKTIQYIRTV---PKMNVIAVSLKPQF 48 (80)
Q Consensus 6 ~~~illlDEp~~~LD----------~~~~~~i~~~l~~~---~~~~ii~ish~~~~ 48 (80)
.|.++++||+.+.+. ......+...+... .+..+|.+|++++.
T Consensus 297 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 577999999976653 23344555555555 35677778887544
No 244
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=50.91 E-value=18 Score=23.88 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=10.3
Q ss_pred CCCCEEEEeCCCC
Q psy832 5 KPSPFLLLDEIDA 17 (80)
Q Consensus 5 ~~~~illlDEp~~ 17 (80)
..|.++++||..+
T Consensus 175 ~~~~vl~iDEid~ 187 (357)
T 3d8b_A 175 QQPAVIFIDEIDS 187 (357)
T ss_dssp TCSEEEEEETHHH
T ss_pred cCCeEEEEeCchh
Confidence 4578999999954
No 245
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=50.72 E-value=20 Score=23.33 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=29.3
Q ss_pred CCCCEEEEeCCCCCCC------H----HHHHHHHHHHHcC----CCceEEEEEeChh-----hHhcCceEEEE
Q psy832 5 KPSPFLLLDEIDAALD------N----INIWKTIQYIRTV----PKMNVIAVSLKPQ-----FYFHSDILFGI 58 (80)
Q Consensus 5 ~~~~illlDEp~~~LD------~----~~~~~i~~~l~~~----~~~~ii~ish~~~-----~~~~~d~~~~i 58 (80)
..|.++++||..+-.. . .....++..+... .+..+|..|..+. +....++.+.+
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
Confidence 4578999999976421 1 2223344444433 2345666676543 23456666554
No 246
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=50.57 E-value=28 Score=18.68 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
+|+++|+|--..+.|. .++++.+++. .+..+|++|..
T Consensus 49 ~~dlvilD~~lp~~~g---~~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 49 NPNVVILDIEMPGMTG---LEVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp CCSEEEECSSCSSSCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred CCCEEEEecCCCCCCH---HHHHHHHHHHCCCCcEEEEecC
Confidence 5899999976666653 3556666666 66778888764
No 247
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=50.41 E-value=43 Score=24.62 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=23.7
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~ 34 (80)
.++-.++|+||. -.+|......+..+++..
T Consensus 316 l~~l~~lVlDEA-H~l~~~~~~~l~~Il~~l 345 (666)
T 3o8b_A 316 GGAYDIIICDEC-HSTDSTTILGIGTVLDQA 345 (666)
T ss_dssp TTSCSEEEETTT-TCCSHHHHHHHHHHHHHT
T ss_pred cCcccEEEEccc-hhcCccHHHHHHHHHHhh
Confidence 356789999999 889988877776666666
No 248
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=50.25 E-value=4.6 Score=26.24 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+-.++|+||....++......+...+... .+.++++.|=
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 201 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSA 201 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEE
Confidence 456899999998765555555666666666 6677777764
No 249
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=49.84 E-value=31 Score=19.00 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=26.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.+. ..+++.+++. .+..+|++|..
T Consensus 46 ~~~dliild~~l~~~~g---~~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDG---LALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp TCCSEEEEESCCSSSCH---HHHHHHHHHHCTTSCEEEEECG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCCCCEEEEECC
Confidence 46899999987766653 3455666655 56777777764
No 250
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=49.71 E-value=27 Score=18.31 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=25.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.|+++++|--..+.|. ..+++.+++. .+..+|++|..
T Consensus 47 ~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 47 RPDLVLLDMKIPGMDG---IEILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEecCCCCCCH---HHHHHHHHHhCCCCCEEEEEcc
Confidence 5899999987766664 3455566655 56777777764
No 251
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=49.38 E-value=31 Score=18.91 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=26.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++|+|--..+.|. ..+++.+++. ....+|++|-.
T Consensus 60 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 60 HLPDVALLDYRMPGMDG---AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCeEEEEEcc
Confidence 36899999987766653 4556666766 66677777764
No 252
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=49.06 E-value=21 Score=22.24 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=10.0
Q ss_pred CCCCEEEEeCCCC
Q psy832 5 KPSPFLLLDEIDA 17 (80)
Q Consensus 5 ~~~~illlDEp~~ 17 (80)
.++.++++||...
T Consensus 123 ~~~~vl~iDEid~ 135 (272)
T 1d2n_A 123 SQLSCVVVDDIER 135 (272)
T ss_dssp SSEEEEEECCHHH
T ss_pred cCCcEEEEEChhh
Confidence 3578999999754
No 253
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=49.04 E-value=27 Score=18.04 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=25.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++++|--..+.|. ..+.+.+++. .+..+|++|..
T Consensus 44 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 44 GNYDLVILDIEMPGISG---LEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHccCCCCeEEEEECC
Confidence 36899999987766664 3455666665 56667777654
No 254
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=47.71 E-value=6.6 Score=25.10 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAA-LDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~-LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
..|+++|+||+-.. .+.......++-+... .+.-++.++|
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 46899999998742 3322222222222223 6778888887
No 255
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=47.45 E-value=42 Score=24.12 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=27.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
+.+-.++|+||.... |......+..+++.. .+.++++.|=
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SA 316 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTA 316 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECS
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEEC
Confidence 567789999999986 776655554444443 4667777664
No 256
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=47.21 E-value=9.2 Score=25.76 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~ 47 (80)
+.|-++++||..+-.... .+.+.++.. .|..++++++.+.
T Consensus 278 ~~~~~~~lDE~~~l~~~~---~l~~~~~~~R~~g~~~~~~~Qs~~ 319 (437)
T 1e9r_A 278 KRRLWLFIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTS 319 (437)
T ss_dssp TCCEEEEESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHH
T ss_pred CccEEEEEEcccccccch---hHHHHHHHHhccCCEEEEEecCHH
Confidence 345689999999876422 344556665 6889999999753
No 257
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=47.18 E-value=18 Score=22.72 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 17 AALDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
++.++...+++++.+++. ....-|++||
T Consensus 91 tg~~~~~~~~l~~~i~~~~~~~I~~Ii~TH 120 (270)
T 4eyb_A 91 TAWTDDQTAQILNWIKQEINLPVALAVVTH 120 (270)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 456788888888888765 4567789999
No 258
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=47.05 E-value=32 Score=18.32 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=25.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.|+++++|--..+.|. ..+++.+++. ....+|++|..
T Consensus 47 ~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 47 KPDLIVLDVMLPKLDG---IEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp CCSEEEEESSCSSSCH---HHHHHHHHHTTCCCCEEEEECT
T ss_pred CCCEEEEecCCCCCCH---HHHHHHHHcCCCCCCEEEEECC
Confidence 5899999987776664 3456667766 56667777653
No 259
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=46.75 E-value=8 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=27.8
Q ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALD-NINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+-.++|+||....++ ......+...++.. .+.++++.|=
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 275 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSA 275 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEES
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeC
Confidence 4668999999987766 34555555555555 6778777774
No 260
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=46.68 E-value=11 Score=24.31 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=26.5
Q ss_pred cCCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALD-NINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD-~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+-.++|+||....++ ......+....+.. .+.++++.|=
T Consensus 143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 185 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 185 (395)
T ss_dssp CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEe
Confidence 45678999999986655 23344444445545 6677777774
No 261
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=46.64 E-value=35 Score=18.69 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=26.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--....|. ..+++.+++. .+..+|++|..
T Consensus 65 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 65 ESVDIAILDVEMPVKTG---LEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp SCCSEEEECSSCSSSCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCeEEEEeCC
Confidence 46899999977666553 4556667766 67777877764
No 262
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=46.60 E-value=32 Score=18.16 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=25.1
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAA-LDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~-LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.|+++|+|--... .+. ..+++.+++. .+..+|++|..
T Consensus 50 ~~dlvi~d~~l~~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDG---WQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp CCCEEEEESCCSSSSCH---HHHHHHHHHHCTTCCEEEEESS
T ss_pred CCCEEEEeeeCCCCCCH---HHHHHHHHhcCCCCCEEEEeCC
Confidence 6899999976664 553 3455666655 56677777764
No 263
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=46.53 E-value=33 Score=18.32 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=23.8
Q ss_pred CCCCEEEEeCCCC-----CCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDA-----ALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~-----~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--.. +.+. ..+++.+++. .+..+|++|..
T Consensus 46 ~~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~~~~~~ii~ls~~ 89 (140)
T 2qr3_A 46 ENPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQYRDLPVVLFTAY 89 (140)
T ss_dssp SCEEEEEEETTTTC-----CCH---HHHHHHHHHHCTTCCEEEEEEG
T ss_pred CCCCEEEEeCCcCCCCCCCccH---HHHHHHHHhhCcCCCEEEEECC
Confidence 3588999997655 4443 3455556655 56667777754
No 264
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=46.14 E-value=36 Score=18.65 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=26.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc--C-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT--V-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~--~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.|. .++++.+++ . .+..+|++|..
T Consensus 58 ~~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 58 GRAQLVLLDLNLPDMTG---IDILKLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp TCBEEEEECSBCSSSBH---HHHHHHHHHSTTTTTSCEEEEESC
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHhcccccCCCEEEEecC
Confidence 56899999977666653 455666776 3 56667777754
No 265
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=45.92 E-value=35 Score=18.47 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHc--C-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRT--V-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~--~-~~~~ii~ish~ 45 (80)
.|+++|+|--..+.+. ..+++.+++ . .+..+|++|..
T Consensus 52 ~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 52 HPHLIITEANMPKISG---MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp CCSEEEEESCCSSSCH---HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHcCcccCCCCEEEEeCC
Confidence 5899999987766653 456677776 4 56777777764
No 266
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=45.91 E-value=35 Score=18.49 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=26.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+ .....+++.+++. .+..+|++|-.
T Consensus 66 ~~~dlvi~D~~l~~---~~g~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 66 DAFDILMIDGAALD---TAELAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp TTCSEEEEECTTCC---HHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCCEEEEeCCCCC---ccHHHHHHHHHHhCCCCcEEEEeCC
Confidence 57899999976544 3445566666666 66778877764
No 267
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=45.80 E-value=34 Score=18.28 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=26.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++|+|--..+.+. ..+++.+++. ....+|++|-.
T Consensus 50 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGG---LEMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HCCSEEEECSSCSSSCH---HHHHHHHHHTTCCCEEEECCCC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCcEEEEecC
Confidence 36899999977666553 4556667766 66777777764
No 268
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=45.66 E-value=35 Score=18.38 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=26.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.|. ..+++.+++. .+..+|++|-.
T Consensus 48 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSG---MDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp TTCCEEEEESCCSSSCH---HHHHHHHHHHCTTCEEEEEECT
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCeEEEEECC
Confidence 47899999987766654 3455556655 66777777764
No 269
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=45.54 E-value=11 Score=24.43 Aligned_cols=57 Identities=9% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHcC---CCceEEEEEeC---hh-------------hH-hcC
Q psy832 5 KPSPFLLLDEIDAALDN--------IN----IWKTIQYIRTV---PKMNVIAVSLK---PQ-------------FY-FHS 52 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~--------~~----~~~i~~~l~~~---~~~~ii~ish~---~~-------------~~-~~~ 52 (80)
.+++++++|..++-... .. ..+++..|+.+ .+.++|+++|- .+ .+ ..+
T Consensus 203 ~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~ 282 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAA 282 (322)
T ss_dssp CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHC
T ss_pred cCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcC
Confidence 46789999998865421 11 23444445444 57888888772 11 12 247
Q ss_pred ceEEEEeee
Q psy832 53 DILFGITLK 61 (80)
Q Consensus 53 d~~~~i~~~ 61 (80)
|.++.+++.
T Consensus 283 d~~i~l~~~ 291 (322)
T 2i1q_A 283 TFRFFVRKG 291 (322)
T ss_dssp SEEEEEEEC
T ss_pred cEEEEEEec
Confidence 888888765
No 270
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=45.47 E-value=20 Score=24.49 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCCCEEEEeCCCCCCC------HHHHHHHH-HHHHcC-------CCceEEEEEeChhh-----HhcCceEEEE
Q psy832 5 KPSPFLLLDEIDAALD------NINIWKTI-QYIRTV-------PKMNVIAVSLKPQF-----YFHSDILFGI 58 (80)
Q Consensus 5 ~~~~illlDEp~~~LD------~~~~~~i~-~~l~~~-------~~~~ii~ish~~~~-----~~~~d~~~~i 58 (80)
..|.++++||..+-.. .....++. .++..+ .+..+|.+|+.+.. ...+++++.+
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 298 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 298 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEEC
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEe
Confidence 3578999999986532 11122222 333333 24567777776533 3346665554
No 271
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=45.10 E-value=0.6 Score=32.80 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=24.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhh
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQF 48 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~ 48 (80)
+++|+ ||++++||. ...+. .++ -+.++.++||.+..
T Consensus 34 dvlLm-p~~s~~~p~-~v~l~---~eLt~~~~~~iP~vsa~md~ 72 (514)
T 1jcn_A 34 DFLIL-PGFIDFIAD-EVDLT---SALTRKITLKTPLISSPMDT 72 (514)
T ss_dssp GEEEC-CCCCCSCGG-GCBCC---EESSSSCEESSCEEECCCTT
T ss_pred cEEec-cCccCCCcc-eeEEE---eeccCCeeEeceEEEEehhh
Confidence 89999 999999993 32221 223 24567888997544
No 272
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=44.86 E-value=9.3 Score=24.90 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALD-NINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+-.++|+||....++ ......+...++.. .+.++++.|=
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 208 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSA 208 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEES
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEe
Confidence 4567999999987665 33444444455555 6777777774
No 273
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.31 E-value=82 Score=22.84 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=21.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHc
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRT 33 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~ 33 (80)
+..++++||... +.+.....+.+.+.+
T Consensus 557 ~~~vl~lDEi~~-~~~~~~~~Ll~~le~ 583 (758)
T 1r6b_X 557 PHAVLLLDEIEK-AHPDVFNILLQVMDN 583 (758)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCccc-cCHHHHHHHHHHhcC
Confidence 457999999975 578888888888875
No 274
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=44.21 E-value=31 Score=22.87 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=10.5
Q ss_pred CCCEEEEeCCCCC
Q psy832 6 PSPFLLLDEIDAA 18 (80)
Q Consensus 6 ~~~illlDEp~~~ 18 (80)
.|.+|++||..+-
T Consensus 207 ~~~il~iDEid~l 219 (389)
T 3vfd_A 207 QPSIIFIDQVDSL 219 (389)
T ss_dssp SSEEEEEETGGGG
T ss_pred CCeEEEEECchhh
Confidence 5679999999754
No 275
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=44.12 E-value=39 Score=18.54 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=26.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++|+|--..+.|. ..+++.+++. .+..+|++|-.
T Consensus 57 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 57 REVDLVISAAHLPQMDG---PTLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHHCTTSEEEEECCC
T ss_pred CCCCEEEEeCCCCcCcH---HHHHHHHHhHCCCCeEEEEECC
Confidence 46899999987766654 3455556655 66777777764
No 276
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=44.10 E-value=37 Score=18.20 Aligned_cols=38 Identities=8% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEE-eC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVS-LK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~is-h~ 45 (80)
..|+++|+|--..+.+. .++++.+++. .+..+|++| ..
T Consensus 59 ~~~dlvilD~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSI---FSLLDIVKEQTKQPSVLILTTGR 98 (138)
T ss_dssp GSCSEEEEETTCTTSCH---HHHHHHHTTSSSCCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCCCCEEEEECCC
Confidence 46899999987766653 3566667766 677888887 53
No 277
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=43.94 E-value=37 Score=18.14 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=25.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. .++++.+++. .+..+|++|-.
T Consensus 46 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 46 EFFNLALFXIKLPDMEG---TELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp SCCSEEEECSBCSSSBH---HHHHHHHHHHCTTSEEEEEESC
T ss_pred CCCCEEEEecCCCCCch---HHHHHHHHhhCCCCcEEEEecc
Confidence 36899999976666653 3455566655 56677777754
No 278
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=43.87 E-value=33 Score=24.52 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+++|+||.. -+|..... .+++.. .+.++|++.-
T Consensus 262 ~~d~lIIDEAs-ml~~~~~~---~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 262 HLDVLVVDEAS-MIDLPMMS---RLIDALPDHARVIFLGD 297 (608)
T ss_dssp SCSEEEECSGG-GCBHHHHH---HHHHTCCTTCEEEEEEC
T ss_pred CCCEEEEechh-hCCHHHHH---HHHHhCCCCCEEEEEcc
Confidence 45799999999 88855433 345555 6778888764
No 279
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=43.55 E-value=31 Score=20.84 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=18.8
Q ss_pred HHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 24 IWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 24 ~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
...+.+.+++. ...++++|+|++.+
T Consensus 98 ~~~~l~~i~~~~~~~~~vllvGHnP~l 124 (186)
T 4hbz_A 98 VDEILAEVAAVPADASTVLVVGHAPTI 124 (186)
T ss_dssp HHHHHHHHHTSCTTCSEEEEEECTTHH
T ss_pred hHHHHHHHHhccCCCCeeeecccCCCH
Confidence 34566778877 56789999999765
No 280
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=43.07 E-value=39 Score=18.17 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=24.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. ..+++.+++. .+..+|++|-.
T Consensus 43 ~~~dlvl~D~~lp~~~g---~~~~~~l~~~~~~~~ii~~s~~ 81 (139)
T 2jk1_A 43 EWVQVIICDQRMPGRTG---VDFLTEVRERWPETVRIIITGY 81 (139)
T ss_dssp SCEEEEEEESCCSSSCH---HHHHHHHHHHCTTSEEEEEESC
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCcEEEEeCC
Confidence 35889999987777664 3455556655 55666666653
No 281
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=42.49 E-value=64 Score=20.53 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=23.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~ 34 (80)
..++.++++||... +.+.....+.+.+.+.
T Consensus 104 ~~~~~vl~lDEi~~-l~~~~~~~Ll~~l~~~ 133 (338)
T 3pfi_A 104 LSEGDILFIDEIHR-LSPAIEEVLYPAMEDY 133 (338)
T ss_dssp CCTTCEEEEETGGG-CCHHHHHHHHHHHHTS
T ss_pred ccCCCEEEEechhh-cCHHHHHHHHHHHHhc
Confidence 35688999999885 5677888888877763
No 282
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=41.86 E-value=40 Score=18.03 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc--C-CCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT--V-PKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~--~-~~~~ii~ish~~ 46 (80)
.+|+++|+|--..+.|. ..+++.+++ . .+..+|++|-..
T Consensus 49 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 49 RPYAAMTVDLNLPDQDG---VSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCcccCCCCEEEEecCC
Confidence 46899999987776663 456667776 3 677888888653
No 283
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=41.51 E-value=37 Score=17.54 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=25.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. .++.+.+++. ....+|++|..
T Consensus 43 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 43 HIPDIAIVDLGLPDEDG---LSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHHTTCCSCEEEEESC
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCEEEEecC
Confidence 36899999976666654 3456666665 56677777754
No 284
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.33 E-value=24 Score=24.90 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCCCEEEEeCCCCCCC----------HHHHHHHHHHHHcC------CCceEEEEEeChhh-----Hh--cCceEEEEe
Q psy832 5 KPSPFLLLDEIDAALD----------NINIWKTIQYIRTV------PKMNVIAVSLKPQF-----YF--HSDILFGIT 59 (80)
Q Consensus 5 ~~~~illlDEp~~~LD----------~~~~~~i~~~l~~~------~~~~ii~ish~~~~-----~~--~~d~~~~i~ 59 (80)
..|-++++||..+-.. ......+..+|.++ .+.-+|..|.+++. .+ ..|+.+.+.
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~ 378 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS 378 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeC
Confidence 4578999999997652 22333444455543 24456777776443 33 467776553
No 285
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=41.24 E-value=45 Score=18.45 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.|+++|+|--..+.|. ..+++.+++. .+..+|++|-.
T Consensus 83 ~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDG---ITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp GCCEEEECSSCSSSCH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCEEEEeccCCCccH---HHHHHHHHhhCCCCcEEEEecc
Confidence 5789999977766664 3455666665 56667777753
No 286
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=40.81 E-value=60 Score=20.05 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=35.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeCh-----------hhHhcCceEEEEeee
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKP-----------QFYFHSDILFGITLK 61 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~-----------~~~~~~d~~~~i~~~ 61 (80)
++.++++.||.-=- .+ ..++++.+.+ .+.+||+..++. .++..||++..++--
T Consensus 90 ~~~DvIlIDEaQFf--k~-~ve~~~~L~~-~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl~ai 153 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF--PD-IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAV 153 (195)
T ss_dssp HTCSEEEESSGGGC--TT-HHHHHHHHHH-TTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEECCEE
T ss_pred cCCCEEEEEchhhh--HH-HHHHHHHHHH-CCCeEEEEecccccccccchhHHHHHHhcCeEEEeeeE
Confidence 45689999998765 22 4444443332 678999998863 234579999877544
No 287
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=40.55 E-value=20 Score=24.75 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=26.9
Q ss_pred cCCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALD-NINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD-~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+-.++|+||.....+ ......+...++.. .+.++|+.|=
T Consensus 257 ~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 257 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp CTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred ccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 45678999999998776 33444444455555 6777777774
No 288
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.36 E-value=33 Score=25.47 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHc
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRT 33 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~ 33 (80)
+..+++|||+. .+++.....+++.+.+
T Consensus 660 ~~~vl~lDEi~-~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 660 PYSVILFDEIE-KAHPDVFNILLQILDD 686 (854)
T ss_dssp SSEEEEESSGG-GSCHHHHHHHHHHHTT
T ss_pred CCeEEEEeccc-ccCHHHHHHHHHHhcc
Confidence 45699999996 4788888888888875
No 289
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=40.18 E-value=41 Score=17.69 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=26.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeCh
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKP 46 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~ 46 (80)
|+++|+|-...+. ...++++.+++. ....+|++|...
T Consensus 47 ~dlvi~D~~l~~~---~g~~~~~~l~~~~~~~~ii~~s~~~ 84 (135)
T 3eqz_A 47 QDIIILDLMMPDM---DGIEVIRHLAEHKSPASLILISGYD 84 (135)
T ss_dssp TEEEEEECCTTTT---HHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred CCEEEEeCCCCCC---CHHHHHHHHHhCCCCCCEEEEEecc
Confidence 8999999765544 345566777777 677788887654
No 290
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=40.12 E-value=50 Score=25.61 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=30.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+-.++|+||...-+|......+...+..+ .+.++|+-|=
T Consensus 290 ~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSA 329 (1108)
T 3l9o_A 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSA 329 (1108)
T ss_dssp HEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEEC
T ss_pred cCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcC
Confidence 34689999999999988777777777777 6777777663
No 291
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=40.01 E-value=45 Score=18.00 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=25.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.|+++|+|--..+.|. ..+++.+++. ....+|++|..
T Consensus 48 ~~dlvllD~~l~~~~g---~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 48 KPQLIILDLKLPDMSG---EDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp CCSEEEECSBCSSSBH---HHHHHHHHHTTCCCEEEEEESS
T ss_pred CCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCEEEEEec
Confidence 5899999976666653 3456667766 66677877764
No 292
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=39.79 E-value=57 Score=19.14 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=26.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. ..+++.+++. .+..+|++|..
T Consensus 45 ~~~dlvllD~~l~~~~g---~~~~~~lr~~~~~~~ii~ls~~ 83 (225)
T 1kgs_A 45 EPFDVVILDIMLPVHDG---WEILKSMRESGVNTPVLMLTAL 83 (225)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHTTCCCCEEEEESS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCEEEEeCC
Confidence 46899999987666653 3556667766 66777777764
No 293
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=39.67 E-value=0.8 Score=31.47 Aligned_cols=55 Identities=7% Similarity=-0.064 Sum_probs=40.8
Q ss_pred CCC--CEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH-hcCceEE-EEeee
Q psy832 5 KPS--PFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY-FHSDILF-GITLK 61 (80)
Q Consensus 5 ~~~--~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-~~~d~~~-~i~~~ 61 (80)
.+| ++.++|||+..+|+....+.+..++.. .+.+++ +|..... ..|+++. .+..|
T Consensus 138 ~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 138 VDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccC
Confidence 367 889999999999999999988888765 345543 8875543 4577776 45555
No 294
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=39.24 E-value=46 Score=17.93 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=26.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc--C-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT--V-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~--~-~~~~ii~ish~ 45 (80)
.+|+++|+|--..+.| ...+++.+++ . .+..+|++|-.
T Consensus 50 ~~~dlii~D~~l~~~~---g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 50 AKYDLIILDIGLPIAN---GFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp CCCSEEEECTTCGGGC---HHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhcccccCCCEEEEeCC
Confidence 4689999997655544 4456777777 3 56777877753
No 295
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=38.37 E-value=60 Score=18.98 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=26.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
+|+++|+|--..+.|. -.+++.+++. ....+|++|-.
T Consensus 51 ~~dlvllD~~lp~~~g---~~~~~~lr~~~~~~~ii~ls~~ 88 (215)
T 1a04_A 51 DPDLILLDLNMPGMNG---LETLDKLREKSLSGRIVVFSVS 88 (215)
T ss_dssp CCSEEEEETTSTTSCH---HHHHHHHHHSCCCSEEEEEECC
T ss_pred CCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCcEEEEECC
Confidence 5899999987666664 3566667766 56677777653
No 296
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=37.89 E-value=13 Score=26.62 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=28.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
++++.-+++..+++.+|..+.. ..+.++.. ...+++++|+
T Consensus 181 l~~~~~iil~vvt~~~d~a~~~-~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 181 IQRQETISLVVVPSNVDIATTE-ALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp TTSSSCCEEEEEESSSCTTTCH-HHHHHHHHCSSCCSEEEEEEC
T ss_pred HhcCCCCceEEEeccchhccHH-HHHHHHHHhhcCCceEEEecc
Confidence 3567778889999999977443 44555544 4678888888
No 297
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=37.70 E-value=48 Score=17.70 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=26.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc--C-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT--V-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~--~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.+. ..+++.+++ . ....+|++|..
T Consensus 50 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 50 GFSGVVLLDIMMPGMDG---WDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp CCCEEEEEESCCSSSCH---HHHHHHHHHTTCCTTEEEEEEECT
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhhcccCCCCEEEEECC
Confidence 35889999977666553 356666776 4 56778888764
No 298
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.34 E-value=35 Score=23.60 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHHHcC------CCceEEEEEeChh
Q psy832 5 KPSPFLLLDEIDAAL----------DNINIWKTIQYIRTV------PKMNVIAVSLKPQ 47 (80)
Q Consensus 5 ~~~~illlDEp~~~L----------D~~~~~~i~~~l~~~------~~~~ii~ish~~~ 47 (80)
..|.++++||..+-. +......+..+|.++ .+.-+|.+|++++
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 457899999986432 334444444555543 3556778887654
No 299
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=37.25 E-value=82 Score=20.26 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=28.7
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 45 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 86 (287)
T 2vx2_A 45 NIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAE 86 (287)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEES
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 56678885 899999999999999987 34456666654
No 300
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=36.97 E-value=49 Score=17.59 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=26.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc--C-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT--V-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~--~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.+. ..+++.+++ . .+..+|++|..
T Consensus 53 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 53 VKPDVVMLDLMMVGMDG---FSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp TCCSEEEEETTCTTSCH---HHHHHHHHTSTTTTTSEEEEEESS
T ss_pred cCCCEEEEecccCCCcH---HHHHHHHHhCccccCCcEEEEeCC
Confidence 36899999987666653 456677776 3 56778887764
No 301
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=36.71 E-value=62 Score=18.73 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=26.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.|. .++++.+++. .+..+|++|-.
T Consensus 47 ~~~dlvl~D~~lp~~~g---~~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 47 EQHGCLVLDMRMPGMSG---IELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp TSCEEEEEESCCSSSCH---HHHHHHHHHTTCCCCEEEEESC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCEEEEeCC
Confidence 46889999976666654 3556667766 66777777754
No 302
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=36.61 E-value=66 Score=18.96 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=26.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.|. ..+++.+++. .+..+|++|..
T Consensus 50 ~~~dlvllD~~l~~~~g---~~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 50 NRPDAIVLDINMPVLDG---VSVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp SCCSEEEEESSCSSSCH---HHHHHHHHHTTCCCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 36899999987666654 3456667766 66777777753
No 303
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=36.53 E-value=66 Score=18.99 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=22.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHc---C-CCceEEEEEeChhh
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRT---V-PKMNVIAVSLKPQF 48 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~---~-~~~~ii~ish~~~~ 48 (80)
++-..|+.+.+-++.. +.+.+.+ . ...++++|+|.+.+
T Consensus 73 ~~~~~~~L~~~~~~~~---~~~~l~~~~~~~~~~~vllVgH~P~l 114 (172)
T 3f2i_A 73 QLEESNHLAPNGNIFN---WLDYWLKPKNFPENAQIAIVGHEPCL 114 (172)
T ss_dssp CEEECGGGSTTCCHHH---HHHHTHHHHCCCTTCEEEEEECTTHH
T ss_pred CeEECcccCCccCHHH---HHHHHHHhccCCCCCEEEEEeCChHH
Confidence 4545555444444443 3444443 3 56799999998654
No 304
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=36.45 E-value=53 Score=19.88 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=21.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC----CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV----PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~----~~~~ii~ish 44 (80)
.++.++|+..+.+.++......+..+.+.. ....++++++
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 456667777666666665544443333322 2246666666
No 305
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=36.02 E-value=30 Score=18.98 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=20.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.+ ...+++.+++. .+..+|++|-.
T Consensus 49 ~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAE---AIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp CCCSEEEECC---------CHHHHHHHHHHCTTSEEEEC---
T ss_pred CCCCEEEEeCCCCCCc---hHHHHHHHHHhCCCCeEEEEeCC
Confidence 4689999996554433 33455666665 56677777653
No 306
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=35.82 E-value=40 Score=20.55 Aligned_cols=39 Identities=5% Similarity=-0.060 Sum_probs=24.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-C-CceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV-P-KMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~-~~~ii~ish 44 (80)
+.+-++++.|+- .++....+.+.++|+.+ - ...+|++..
T Consensus 86 ~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l~~~~~~LiV~~~ 126 (175)
T 2ftc_D 86 LAQDDLHIMDSL--ELPTGDPQYLTELAHYRRWGDSVLLVDLT 126 (175)
T ss_pred ccCCCEEEEecc--cCCCCCHHHHHHHHHHCCCCCceEEEECC
Confidence 456689999985 34555567777888877 3 334444433
No 307
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=34.86 E-value=25 Score=19.87 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=22.5
Q ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHHHcC---CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDAALD----NINIWKTIQYIRTV---PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~~LD----~~~~~~i~~~l~~~---~~~~ii~ish~~~ 47 (80)
.+.++++||...... ......+.+.+... .+..+|.++....
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 567999999765431 11112233333333 4566777776544
No 308
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=34.71 E-value=94 Score=21.03 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=24.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
+.+-.++|+||.. .+|...... ...+... .+.++++.|=
T Consensus 108 l~~~~~iViDEah-~~~~~~~~~-~~~~~~~~~~~~~~~i~~SA 149 (451)
T 2jlq_A 108 VPNYNLIVMDEAH-FTDPCSVAA-RGYISTRVEMGEAAAIFMTA 149 (451)
T ss_dssp CCCCSEEEEETTT-CCSHHHHHH-HHHHHHHHHTTSCEEEEECS
T ss_pred ccCCCEEEEeCCc-cCCcchHHH-HHHHHHhhcCCCceEEEEcc
Confidence 4567899999999 456654443 2333222 4667777664
No 309
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=34.53 E-value=48 Score=19.37 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=27.1
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 10 LLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 10 lllDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
.+.|+ ..-|++..+.++-+.+.++ .+.++.+++=
T Consensus 16 ~V~D~-A~vLs~~~~~~L~~~l~~l~~~tg~qi~VvtV 52 (148)
T 2kpt_A 16 NVTDY-TGQISSSDITNIQAAIDDVKASEQKVIFVVFL 52 (148)
T ss_dssp SEEES-SSCSCHHHHHHHHHHHHHHHHHSCCEEEEEEC
T ss_pred eeeeC-CCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 45675 5578999999999999988 5788888874
No 310
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=34.25 E-value=69 Score=20.24 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=31.1
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-....+
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F 66 (265)
T 3rsi_A 21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAY 66 (265)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCS
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCc
Confidence 56788885 899999999999999887 455666666654433
No 311
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=34.18 E-value=73 Score=19.86 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=28.3
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
++-||-| -++|+.+...++.+.+.+. ....+|++|-
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg 52 (250)
T 2a7k_A 12 VITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYG 52 (250)
T ss_dssp EEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 4668888 4999999999999999887 3556666665
No 312
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.12 E-value=73 Score=22.07 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=25.3
Q ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHHHHcCCCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALD--NINIWKTIQYIRTVPKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD--~~~~~~i~~~l~~~~~~~ii~ish~~ 46 (80)
..+.++++||...--. ......+.++++. .+..+|+++.+.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 4678999999975432 2223445555544 455688888753
No 313
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=34.02 E-value=12 Score=24.30 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~ 34 (80)
.++| |||.|+|.++-.++.+...+.
T Consensus 187 g~~l--EPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 187 DFWL--EPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp TCEE--EEBSSCCTTTHHHHHHHHHHH
T ss_pred CceE--CCCCCccHhhHHHHHHHHHHc
Confidence 4444 999999999999999876654
No 314
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=33.98 E-value=61 Score=20.75 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=29.1
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 81 (276)
T 3rrv_A 40 IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGA 81 (276)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 56788886 899999999999999887 35566666643
No 315
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=33.75 E-value=75 Score=19.79 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=23.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
..+|+|=. .+-.+.....+.+.+++. .....|++||
T Consensus 42 ~~ilID~G-~~~~~~~~~~l~~~l~~~~~~i~~Ii~TH 78 (289)
T 4ad9_A 42 RRILIDTG-EPAIPEYISCLKQALTEFNTAIQEIVVTH 78 (289)
T ss_dssp SEEEECCC-STTCHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred ceEEEeCC-CCCChHHHHHHHHHHHHcCCCceEEEEcC
Confidence 45666632 222355667777788776 6678899999
No 316
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.58 E-value=58 Score=17.42 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=25.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.+. ..+++.+++. ....+|++|..
T Consensus 54 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 92 (143)
T 2qv0_A 54 NKVDAIFLDINIPSLDG---VLLAQNISQFAHKPFIVFITAW 92 (143)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHTTSTTCCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHccCCCceEEEEeCC
Confidence 46899999976666553 3556667766 55567777754
No 317
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=33.40 E-value=90 Score=19.59 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=29.0
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC-C-CceEEEEEe
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV-P-KMNVIAVSL 44 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~-~-~~~ii~ish 44 (80)
++-||-|. ++|+.+...++.+.+.+. . ...+|++|-
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~vr~vVltg 55 (261)
T 1ef8_A 16 VIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRA 55 (261)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHTCSTTCCEEEEEC
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCceEEEEEC
Confidence 56788885 999999999999999988 2 256677766
No 318
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=33.36 E-value=71 Score=18.36 Aligned_cols=36 Identities=8% Similarity=0.141 Sum_probs=25.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.|+++|+|-...+.|. . +.+.++.. ....+|++|-.
T Consensus 52 ~~dlvl~D~~mp~~~g---~-l~~~~~~~~~~~~ii~lt~~ 88 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHD---E-IAALLAAGTPRTTLVALVEY 88 (196)
T ss_dssp CCSEEEEECCSSTHHH---H-HHHHHHHSCTTCEEEEEECC
T ss_pred CCCEEEEeCCCCccch---H-HHHHHhccCCCCCEEEEEcC
Confidence 6899999977655542 2 66677766 66777777754
No 319
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=33.26 E-value=84 Score=19.81 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=28.8
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID-AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~-~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. .+..+|++|-.
T Consensus 19 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 59 (263)
T 3l3s_A 19 TLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGP 59 (263)
T ss_dssp EEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 56778876 899999999999999887 34556666654
No 320
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=33.20 E-value=13 Score=24.50 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=18.9
Q ss_pred CCCCCCCHHHHHHHHHHHHcC
Q psy832 14 EIDAALDNINIWKTIQYIRTV 34 (80)
Q Consensus 14 Ep~~~LD~~~~~~i~~~l~~~ 34 (80)
|||.|+|.++-.++.+...+.
T Consensus 214 EPTGGIdl~Nf~~I~~i~l~a 234 (275)
T 3m6y_A 214 EPTGGIDKENFETIVRIALEA 234 (275)
T ss_dssp EEBSSCCTTTHHHHHHHHHHT
T ss_pred CCCCCccHhHHHHHHHHHHHc
Confidence 999999999999999877665
No 321
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=33.15 E-value=64 Score=20.45 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=30.7
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-....+
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F 68 (274)
T 3tlf_A 23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAF 68 (274)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEE
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCc
Confidence 57788886 899999999999999887 345566666543333
No 322
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=32.87 E-value=81 Score=20.80 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=27.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhh
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQF 48 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~ 48 (80)
..+++++|=|.++++.+.. +.++ .+..++++|.++..
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~----~~l~--~~g~ivyvsc~p~t 331 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETE----KMVQ--AYPRILYISCNPET 331 (369)
T ss_dssp CEEEEEECCCTTCCCHHHH----HHHT--TSSEEEEEESCHHH
T ss_pred CCCEEEECcCccccHHHHH----HHHh--CCCEEEEEECCHHH
Confidence 4689999999999985433 3333 46688999987654
No 323
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=32.53 E-value=57 Score=17.01 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=25.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. .++.+.+++. ....+|++|..
T Consensus 48 ~~~dlvi~D~~l~~~~g---~~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 48 GGYGFVISDWNMPNMDG---LELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp CCCCEEEEESCCSSSCH---HHHHHHHHC--CCTTCCEEEEESS
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhhcccCCCcEEEEecC
Confidence 46899999987777664 3566677763 45667777754
No 324
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=32.51 E-value=60 Score=17.28 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=26.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc----C-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT----V-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~----~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.|.. .+++.+++ . ....+|++|-.
T Consensus 59 ~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGW---ELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp CCCSEEEEESSCSSSCHH---HHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred CCCCEEEEcCCCCCCCHH---HHHHHHHHhhhhccCCCeEEEEeCC
Confidence 578999999877776643 45555665 4 56677777753
No 325
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=32.43 E-value=65 Score=17.68 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=27.1
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChh
Q psy832 6 PSPFLLLD-EIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlD-Ep~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~ 47 (80)
+++.+++| .....+|......+.+..+.+ .|..++++.-.+.
T Consensus 48 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 92 (130)
T 4dgh_A 48 TPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSR 92 (130)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 45666666 556667777777777777766 5666666655543
No 326
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=32.08 E-value=66 Score=17.65 Aligned_cols=37 Identities=11% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
.+|+++|+|--..+.|. ..+++.+++. .+..+|++|-
T Consensus 50 ~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 50 TRPDLIISDVLMPEMDG---YALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp CCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCCCcCCCCEEEEEC
Confidence 46899999987777664 3455666654 4566777775
No 327
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=31.89 E-value=12 Score=23.55 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=25.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.+-.++++||.....+......+...+... ....+++.|-
T Consensus 128 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (337)
T 2z0m_A 128 SSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSA 168 (337)
T ss_dssp GGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEES
T ss_pred hhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeC
Confidence 345789999988655544455555556655 5556655453
No 328
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=31.86 E-value=40 Score=19.23 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=25.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 9 FLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
+||-|+-..+=|+..+..+.++.... .|..+.++|.+
T Consensus 58 LLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~~ 96 (124)
T 1x52_A 58 LLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSL 96 (124)
T ss_dssp EEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 56666666555777777777744444 67788888864
No 329
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=31.54 E-value=81 Score=19.76 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=28.7
Q ss_pred CEEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 8 PFLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 8 ~illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
-++-||-|. ++|+.....++.+.+.+. .+..+|++|-.
T Consensus 16 ~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 58 (258)
T 2pbp_A 16 GIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGR 58 (258)
T ss_dssp EEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC
Confidence 356688884 899999999999999887 34556666543
No 330
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=31.47 E-value=55 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHcC--CCceEEEEE
Q psy832 17 AALDNINIWKTIQYIRTV--PKMNVIAVS 43 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~--~~~~ii~is 43 (80)
.++|++....+.+.++++ .+..+++|+
T Consensus 67 ~~ld~~~i~~la~~I~~l~~~G~~vviV~ 95 (281)
T 3nwy_A 67 VGLDPDVVAQVARQIADVVRGGVQIAVVI 95 (281)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 679999999999999888 677888776
No 331
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=31.39 E-value=60 Score=16.93 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+|+++|+|--..+.|. ..+++.+++. .+..+|++|-.
T Consensus 46 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 46 RGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp SCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEEECC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEEECC
Confidence 46899999987766653 3455666654 45677777753
No 332
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=31.29 E-value=81 Score=18.43 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=26.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|--..+.|. ..+++.+++. .+..+|++|..
T Consensus 42 ~~~dlvllD~~lp~~~g---~~~~~~lr~~~~~~~ii~lt~~ 80 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSG---YEICRMIKETRPETWVILLTLL 80 (220)
T ss_dssp SCCSEEEEESBCSSSBH---HHHHHHHHHHCTTSEEEEEESC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCcEEEEEcC
Confidence 57899999977666653 3456666665 66777777753
No 333
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=31.10 E-value=80 Score=18.29 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=25.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEE
Q psy832 10 LLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVS 43 (80)
Q Consensus 10 lllDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~is 43 (80)
.+.|+ ..-|++....++-+.+.++ .+.++.+++
T Consensus 20 ~V~D~-a~~Ls~~~~~~L~~~l~~~e~~t~~qi~Vv~ 55 (157)
T 2kw7_A 20 LVTDE-AGLLSNAQEEVMNGRLRAIRSSHAVEFAVVT 55 (157)
T ss_dssp CEEEC-SSCSCHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred eEEcc-cccCCHHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 67787 4669999999999999888 456666654
No 334
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=31.05 E-value=41 Score=25.32 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCCCEEEEeCCCCCCC----------HHHHHHHHHHHHcC---CCceEEEEEeChhhH-----h--cCceEEEE
Q psy832 5 KPSPFLLLDEIDAALD----------NINIWKTIQYIRTV---PKMNVIAVSLKPQFY-----F--HSDILFGI 58 (80)
Q Consensus 5 ~~~~illlDEp~~~LD----------~~~~~~i~~~l~~~---~~~~ii~ish~~~~~-----~--~~d~~~~i 58 (80)
..|.++++||..+-.- .....+++..+... .+..+|..|.+++.+ + ..|+.+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i 369 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEEC
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEec
Confidence 4578999999987542 12233344444444 345667777765432 2 35666655
No 335
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=30.94 E-value=76 Score=20.27 Aligned_cols=40 Identities=5% Similarity=0.260 Sum_probs=30.4
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
++-||-|. ++|+.+...++.+.+.+. ... +|++|-....+
T Consensus 38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~F 82 (280)
T 2f6q_A 38 KIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYY 82 (280)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCS
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCc
Confidence 45678874 999999999999999887 456 77777654433
No 336
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=30.88 E-value=16 Score=25.09 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
..|.++++ +.+|.... ...+.+.+. .+.+++.+|-
T Consensus 269 ~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 269 RRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred cCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 57888888 89998765 333333332 4667777774
No 337
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=30.86 E-value=79 Score=21.73 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=26.4
Q ss_pred CCCCEEEEeCCCCCC------CH-HHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAAL------DN-INIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~L------D~-~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+++++++|-...-- +. ....++...|+.+ .+.++|+++|-
T Consensus 353 ~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~ 403 (503)
T 1q57_A 353 LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 403 (503)
T ss_dssp TCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcC
Confidence 368899999665421 11 2234555666665 48999999993
No 338
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=30.72 E-value=86 Score=19.55 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=28.2
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-| -++|+.+...++.+.+.+. .+..+|++|-.
T Consensus 11 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 52 (253)
T 1uiy_A 11 VVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGR 52 (253)
T ss_dssp EEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 4668888 4999999999999999887 34555666543
No 339
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=30.70 E-value=51 Score=19.74 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=14.1
Q ss_pred HHHHHHHHcC----CCceEEEEEeCh
Q psy832 25 WKTIQYIRTV----PKMNVIAVSLKP 46 (80)
Q Consensus 25 ~~i~~~l~~~----~~~~ii~ish~~ 46 (80)
.++...+.++ .+.++++|||..
T Consensus 127 ~R~~~~l~~l~~~~~~~~vlvVsHg~ 152 (207)
T 1h2e_A 127 QRALEAVQSIVDRHEGETVLIVTHGV 152 (207)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEcCHH
Confidence 3444445544 357899999974
No 340
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=30.61 E-value=76 Score=19.88 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=29.0
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~ 53 (254)
T 3gow_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGA 53 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 57788885 899999999999999887 34556666654
No 341
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=30.52 E-value=87 Score=19.94 Aligned_cols=41 Identities=7% Similarity=0.126 Sum_probs=30.6
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
.+-||-|. ++|+.+...++.+.+.+. ....+|++|-....+
T Consensus 27 ~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~F 72 (274)
T 4fzw_C 27 TLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGF 72 (274)
T ss_dssp EEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCS
T ss_pred EEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCce
Confidence 56688885 799999999999999887 455566666544333
No 342
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=30.33 E-value=82 Score=20.89 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=29.9
Q ss_pred CEEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 8 PFLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 8 ~illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
-++-||-|. ++|+++...++.+.+.+. ....+|++|-.
T Consensus 68 a~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~ 110 (334)
T 3t8b_A 68 VRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGN 110 (334)
T ss_dssp EEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCC
Confidence 357788886 899999999999999887 45566666654
No 343
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=30.16 E-value=77 Score=20.05 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=29.2
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 57 (275)
T 1dci_A 16 HVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGA 57 (275)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 57789885 999999999999999887 34566666654
No 344
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=30.08 E-value=25 Score=20.60 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=12.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQ 29 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~ 29 (80)
.+-.++|+||....++......++.
T Consensus 161 ~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 161 SDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp GGCSEEEETTC-------CHHHHHH
T ss_pred hcccEEEEECchhhccCCcHHHHHH
Confidence 4568999999999887655555543
No 345
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=29.91 E-value=81 Score=20.81 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=24.9
Q ss_pred CCCCEEEEeCCC------CCCCHHHH-HHHHHHHHcCCCceEEEEEeCh
Q psy832 5 KPSPFLLLDEID------AALDNINI-WKTIQYIRTVPKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~------~~LD~~~~-~~i~~~l~~~~~~~ii~ish~~ 46 (80)
....++|+|.|. .++....- ..++--|++.-..+++.++++.
T Consensus 148 ~~~~vlIldqpdlLLa~t~~it~~~L~~~~I~~L~k~~~~lvvt~saD~ 196 (280)
T 4a8j_C 148 PTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQCKVLIIVSNSDI 196 (280)
T ss_dssp TTSEEEEEECGGGHHHHSTTCCHHHHHHHTHHHHHHTCSEEEEEEECGG
T ss_pred CCCeEEEEcChHHHHHhccCCCHHHHHHHHHHHHHHhcceEEEEeccCc
Confidence 345799999994 34665544 4444444443455666667753
No 346
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=29.77 E-value=92 Score=19.65 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=29.3
Q ss_pred CEEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 8 PFLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 8 ~illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
-++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 18 ~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 60 (265)
T 3qxz_A 18 AVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA 60 (265)
T ss_dssp EEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC
Confidence 357788886 899999999999999887 34556666654
No 347
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=29.72 E-value=76 Score=17.60 Aligned_cols=44 Identities=5% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 5 KPSPFLLLD-EIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlD-Ep~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
.+++.+++| .....+|......+....+.+ .|..++++.-++..
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 96 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRL 96 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 456778888 566778998888888888877 57777777655544
No 348
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=29.66 E-value=72 Score=21.53 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=26.8
Q ss_pred CCCCEEEEeCCCCCCC-H--------------HHHHHHHHHHHcC------CCceEEEEEeCh
Q psy832 5 KPSPFLLLDEIDAALD-N--------------INIWKTIQYIRTV------PKMNVIAVSLKP 46 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-~--------------~~~~~i~~~l~~~------~~~~ii~ish~~ 46 (80)
.+|.+++.|-.++-.- . ..++.+.+.|+.+ .+.++|++-|-.
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 3688999998887652 1 1233344444442 689999999953
No 349
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=29.53 E-value=87 Score=19.87 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=28.5
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 57 (268)
T 3i47_A 16 LLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKAN 57 (268)
T ss_dssp EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEC
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 57788885 899999999999999887 34556666543
No 350
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=29.41 E-value=40 Score=21.08 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=22.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEE
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVS 43 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~is 43 (80)
+-.++|+||.....++ .+...++.+ ....++..|
T Consensus 225 ~~~~vIiDEaH~~~~~----~~~~il~~~~~~~~~l~lS 259 (282)
T 1rif_A 225 QFGMMMNDECHLATGK----SISSIISGLNNCMFKFGLS 259 (282)
T ss_dssp GEEEEEEETGGGCCHH----HHHHHTTTCTTCCEEEEEC
T ss_pred hCCEEEEECCccCCcc----cHHHHHHHhhcCCeEEEEe
Confidence 3478999999988753 344445555 555666555
No 351
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=29.38 E-value=82 Score=19.81 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=28.8
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 60 (256)
T 3trr_A 19 LITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGA 60 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEG
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 56788875 899999999999999887 34556666653
No 352
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=29.19 E-value=93 Score=19.77 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=30.6
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-....+
T Consensus 32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F 77 (278)
T 4f47_A 32 IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYF 77 (278)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCC
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcc
Confidence 56778875 899999999999999887 455566666543333
No 353
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=29.12 E-value=75 Score=20.34 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=29.4
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 28 ~itlnrP~~~Nal~~~~~~~L~~al~~~d~~vr~vVltg~ 67 (275)
T 3hin_A 28 TIGLNRPKKRNALNDGLMAALKDCLTDIPDQIRAVVIHGI 67 (275)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHTSSCCTTCCEEEEEES
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHhCcCceEEEEECC
Confidence 56688885 899999999999999888 66666666654
No 354
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=29.02 E-value=82 Score=20.08 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=30.9
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
++-||-|. ++|+.....++.+.+.+. ....+|++|-....+
T Consensus 32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F 77 (279)
T 3t3w_A 32 TITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHF 77 (279)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCS
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCce
Confidence 56788885 899999999999999887 355666666643333
No 355
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=28.93 E-value=85 Score=19.65 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=28.8
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 59 (256)
T 3qmj_A 18 TLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGS 59 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 56788886 799999999999999887 34556666653
No 356
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=28.84 E-value=84 Score=19.87 Aligned_cols=41 Identities=2% Similarity=0.028 Sum_probs=30.5
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-....+
T Consensus 27 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F 72 (265)
T 3qxi_A 27 IITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSF 72 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCC
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCe
Confidence 56778885 899999999999999887 355666666543333
No 357
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.69 E-value=62 Score=16.24 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=24.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.|+++++|-...+.+. ..+.+.+++. .+..+|++|..
T Consensus 45 ~~dlii~d~~~~~~~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 45 QPIVILMAWPPPDQSC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp CCSEEEEECSTTCCTH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred CCCEEEEecCCCCCCH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 5899999987766654 3455666654 35667777754
No 358
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=28.51 E-value=91 Score=19.58 Aligned_cols=38 Identities=24% Similarity=0.135 Sum_probs=29.4
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 8 PFLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 8 ~illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
-.+-||-| -++|+.+...++.+.+.+. .+..+|++|-.
T Consensus 18 ~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 60 (260)
T 1mj3_A 18 GLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGG 60 (260)
T ss_dssp EEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECC
Confidence 35778888 4899999999999999887 35566666653
No 359
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=28.39 E-value=91 Score=19.66 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=29.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-| -++|+.+...++.+.+.+. ....+|++|-.
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 56 (269)
T 1nzy_A 15 EITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA 56 (269)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC
Confidence 5668888 4899999999999999887 35566666654
No 360
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=28.36 E-value=86 Score=20.07 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=28.2
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 37 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 78 (278)
T 3h81_A 37 IITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGS 78 (278)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC
Confidence 56788886 899999999999999887 34556666543
No 361
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=28.32 E-value=1e+02 Score=19.42 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=28.4
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID-AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~-~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 18 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 58 (261)
T 3pea_A 18 VATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGE 58 (261)
T ss_dssp EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 56678776 899999999999999887 34556666653
No 362
>2kx2_A MTH1821, putative uncharacterized protein; structural genomics, U function, structural genomics consortium, SGC; NMR {Methanobacterium thermoautotrophicum}
Probab=28.29 E-value=44 Score=18.41 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 17 AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++||.+..+.+.+.+..- .+...++.+|-
T Consensus 28 sgl~e~~~~kL~~~le~~~~~~ng~L~it~~f 59 (96)
T 2kx2_A 28 SGLDEELTEKLIERLDEDTERDDGDLIITVFY 59 (96)
T ss_dssp ESCCHHHHHHHHHHHCSEEEEETTEEEEECCB
T ss_pred cCCCHHHHHHHHHhccCceEEecCcEEEEEEe
Confidence 689999999999888875 56678888874
No 363
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.24 E-value=55 Score=22.51 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish 44 (80)
..+.++++||... +....+..++..+.+ ....+|..|.
T Consensus 105 ~~~~iLfIDEI~~-l~~~~q~~LL~~le~-~~v~lI~att 142 (447)
T 3pvs_A 105 GRRTILFVDEVHR-FNKSQQDAFLPHIED-GTITFIGATT 142 (447)
T ss_dssp TCCEEEEEETTTC-C------CCHHHHHT-TSCEEEEEES
T ss_pred CCCcEEEEeChhh-hCHHHHHHHHHHHhc-CceEEEecCC
Confidence 3578999999975 455556666666654 4456666664
No 364
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=28.23 E-value=37 Score=18.18 Aligned_cols=38 Identities=24% Similarity=0.123 Sum_probs=24.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++|+|--..+.| ..++++.+++. .+..+|++|-.
T Consensus 58 ~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 58 TRPGIVILDLGGGDLL---GKPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp CCCSEEEEEEETTGGG---GSTTHHHHHGGGTTCCEEEEESC
T ss_pred cCCCEEEEeCCCCCch---HHHHHHHHHhhCCCCcEEEEeCC
Confidence 4689999996544332 23456667776 56677777753
No 365
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=28.06 E-value=98 Score=19.87 Aligned_cols=41 Identities=7% Similarity=0.103 Sum_probs=30.3
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.-..+
T Consensus 36 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F 81 (290)
T 3sll_A 36 LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGF 81 (290)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCS
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCe
Confidence 56788885 899999999999999887 345566666543333
No 366
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=28.00 E-value=84 Score=19.82 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=28.6
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~ 62 (256)
T 3pe8_A 21 TLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGA 62 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEES
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 46778886 899999999999999887 44556666654
No 367
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=27.96 E-value=88 Score=19.89 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=28.7
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 62 (280)
T 1pjh_A 21 IIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS 62 (280)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECB
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 46688884 999999999999999887 35556666654
No 368
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=27.95 E-value=94 Score=19.67 Aligned_cols=37 Identities=5% Similarity=0.120 Sum_probs=28.6
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-| -++|+.+...++.+.+.+. ....+|++|-.
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 62 (267)
T 3r9t_A 21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGA 62 (267)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 4667877 5899999999999999887 34556666654
No 369
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=27.84 E-value=70 Score=19.70 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHcC--CCceEEEEE
Q psy832 17 AALDNINIWKTIQYIRTV--PKMNVIAVS 43 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~--~~~~ii~is 43 (80)
++||+.....+.++++.. .+..+.+++
T Consensus 31 ~gLdp~~a~al~~m~~aA~~~Gi~l~v~s 59 (179)
T 1xp2_A 31 GGMYKITSDKTRNVIKKMAKEGIYLCVAQ 59 (179)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 689999999999998887 577765555
No 370
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=27.82 E-value=91 Score=19.44 Aligned_cols=38 Identities=8% Similarity=-0.014 Sum_probs=29.0
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeCh
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLKP 46 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~ 46 (80)
.+-||-| -++|+.+...++.+.+.+. ....+|++|-..
T Consensus 12 ~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g 54 (254)
T 3hrx_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG 54 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 5667866 5899999999999999987 455666666543
No 371
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=27.69 E-value=95 Score=19.73 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=28.7
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 62 (276)
T 2j5i_A 21 FVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGA 62 (276)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEES
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 45678874 899999999999999887 35566777654
No 372
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=27.69 E-value=1e+02 Score=19.33 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=29.0
Q ss_pred CEEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 8 PFLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 8 ~illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
-++-||-|. ++|+.....++.+.+.+. ....+|++|-.
T Consensus 16 a~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 58 (258)
T 4fzw_A 16 LLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGN 58 (258)
T ss_dssp EEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 356788775 799999999999999887 35556666643
No 373
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=27.59 E-value=92 Score=19.61 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=29.3
Q ss_pred CEEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 8 PFLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 8 ~illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
-++-|+-|. ++++.+...++.+.+.+. ....+|++|-.
T Consensus 22 ~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 64 (267)
T 3oc7_A 22 ARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHT 64 (267)
T ss_dssp EEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred EEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 357788886 899999999999999887 34556666654
No 374
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=27.46 E-value=98 Score=19.36 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=28.4
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-| -++|+.+...++.+.+.+. ....+|++|-.
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 56 (257)
T 2ej5_A 15 WLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGA 56 (257)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC
Confidence 4667877 5999999999999999887 34556666654
No 375
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=27.20 E-value=77 Score=16.85 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=21.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
+|+++|+|-...+.| ...+++.+++. .+..+|++|-.
T Consensus 46 ~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 46 HPDLVILDMDIIGEN---SPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp CCSEEEEETTC---------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred CCCEEEEeCCCCCCc---HHHHHHHHHcCcccCCCCEEEEecC
Confidence 689999996554433 34456666665 45667776653
No 376
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=27.16 E-value=94 Score=19.63 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=29.0
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 64 (262)
T 3r9q_A 23 TVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGD 64 (262)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 56778885 899999999999999887 34566666654
No 377
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=27.14 E-value=1.3e+02 Score=19.36 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=5.4
Q ss_pred CCEEEEeCCC
Q psy832 7 SPFLLLDEID 16 (80)
Q Consensus 7 ~~illlDEp~ 16 (80)
+++++.|+|.
T Consensus 152 ~~i~i~d~~~ 161 (315)
T 3bh0_A 152 SNINIFDKAG 161 (315)
T ss_dssp SCEEEECCSC
T ss_pred CCEEEECCCC
Confidence 4555555554
No 378
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=27.13 E-value=86 Score=19.36 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.2
Q ss_pred CCCEEEEeCCCCCC
Q psy832 6 PSPFLLLDEIDAAL 19 (80)
Q Consensus 6 ~~~illlDEp~~~L 19 (80)
++.++++||....-
T Consensus 116 ~~~vl~iDEi~~l~ 129 (310)
T 1ofh_A 116 QNGIVFIDEIDKIC 129 (310)
T ss_dssp HHCEEEEECGGGGS
T ss_pred CCCEEEEEChhhcC
Confidence 46899999998654
No 379
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=27.05 E-value=50 Score=19.87 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 17 AALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
++........+.+.+++. .....|++||
T Consensus 49 ~g~~~~~~~~~~~~l~~~g~~i~~ii~TH 77 (228)
T 1jjt_A 49 TPFTAKDTEKLVTWFVERGYKIKGSISSH 77 (228)
T ss_dssp CCSSHHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred CCCChhhHHHHHHHHHHcCCCeeEEEeCC
Confidence 444455667788888876 5567799999
No 380
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=27.04 E-value=1e+02 Score=19.88 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=30.9
Q ss_pred CEEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 8 PFLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 8 ~illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
-++-|+-|. ++|+.....++.+.+.+. ....+|++|-....+
T Consensus 41 a~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F 87 (298)
T 3qre_A 41 AIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGF 87 (298)
T ss_dssp EEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCS
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCc
Confidence 357788876 799999999999999887 355566666543333
No 381
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=26.93 E-value=1.1e+02 Score=18.41 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=32.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEE----eChhhHhcCceEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVS----LKPQFYFHSDILFGIT 59 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~is----h~~~~~~~~d~~~~i~ 59 (80)
+.-+++|||--..++...-.+.++-+... ...-+++|- +..+....||..+.+.
T Consensus 74 ~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~~rA~~~lSlS 132 (163)
T 4fak_A 74 QSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFS 132 (163)
T ss_dssp TSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHHCSEEEESC
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCccCHHHHHhcCceEEEe
Confidence 34588899999999876655555444433 223344443 3456666788776553
No 382
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=26.87 E-value=78 Score=16.80 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=19.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHcCCCceEE
Q psy832 13 DEIDAALDNINIWKTIQYIRTVPKMNVI 40 (80)
Q Consensus 13 DEp~~~LD~~~~~~i~~~l~~~~~~~ii 40 (80)
.|.+.++|+.--.+.++.|.+..+++++
T Consensus 41 ~~ef~gmd~~~L~kaL~~L~k~gkA~i~ 68 (79)
T 3htu_A 41 DEEFHGLDEATLLRALQALQQEHKAEII 68 (79)
T ss_dssp TSTTTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 5788899998888877777664334444
No 383
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=26.63 E-value=87 Score=19.91 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=28.6
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 29 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 70 (279)
T 3g64_A 29 TVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGE 70 (279)
T ss_dssp EEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 56788885 899999999999999887 34556666643
No 384
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=26.61 E-value=96 Score=19.91 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=28.5
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 79 (286)
T 3myb_A 38 TLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAAS 79 (286)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 57788886 699999999999999887 34556666543
No 385
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=26.44 E-value=74 Score=16.36 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. ..+.+.+++.....+|++|..
T Consensus 45 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 45 QSVDLILLDINLPDENG---LMLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHTTCCCEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCh---HHHHHHHHhcCCCCEEEEECC
Confidence 36899999987766664 345555655444567777654
No 386
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=26.42 E-value=76 Score=19.18 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 16 DAALDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 16 ~~~LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
.++|+++..+.+.++++.. .|..+.+++=
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~sg 60 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQG 60 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3589999999999999887 6777766663
No 387
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=26.40 E-value=89 Score=17.33 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 6 PSPFLLLD-EIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 6 ~~~illlD-Ep~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
+++.+++| .....+|......+....+++ .|..+.++.-....
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 108 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQV 108 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHH
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 56788888 567788999999999988888 67777777666544
No 388
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=26.32 E-value=97 Score=20.15 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=11.4
Q ss_pred CCCCEEEEeCCCC
Q psy832 5 KPSPFLLLDEIDA 17 (80)
Q Consensus 5 ~~~~illlDEp~~ 17 (80)
.+++++|+|+|..
T Consensus 185 ~~~dvvIiDtpg~ 197 (306)
T 1vma_A 185 RNKDVVIIDTAGR 197 (306)
T ss_dssp TTCSEEEEEECCC
T ss_pred cCCCEEEEECCCc
Confidence 6789999999975
No 389
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=26.32 E-value=99 Score=19.69 Aligned_cols=36 Identities=6% Similarity=0.177 Sum_probs=28.3
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
++-|+-|. ++|+.....++.+.+.+. ....+|++|-
T Consensus 22 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 62 (275)
T 4eml_A 22 KIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTG 62 (275)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeC
Confidence 46688886 899999999999999887 3455666665
No 390
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=26.23 E-value=1.1e+02 Score=19.33 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=28.2
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-| -++|+.+...++.+.+.+. ....+|++|-.
T Consensus 25 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 66 (273)
T 2uzf_A 25 KVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGE 66 (273)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 4667877 4899999999999999887 34556666654
No 391
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=26.20 E-value=1e+02 Score=19.19 Aligned_cols=37 Identities=5% Similarity=0.024 Sum_probs=28.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-| .++|+.+...++.+.+.+. ....+|++|-.
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 56 (243)
T 2q35_A 15 QITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGY 56 (243)
T ss_dssp EEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECB
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 5677877 5899999999999999887 34556666643
No 392
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=26.17 E-value=72 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHc
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRT 33 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~ 33 (80)
.+.++++||.. .+++.....++..+.+
T Consensus 109 ~~~IL~IDEI~-r~~~~~q~~LL~~lee 135 (500)
T 3nbx_X 109 EAEIVFLDEIW-KAGPAILNTLLTAINE 135 (500)
T ss_dssp GCSEEEEESGG-GCCHHHHHHHHHHHHS
T ss_pred cceeeeHHhHh-hhcHHHHHHHHHHHHH
Confidence 46689999995 4789999999999975
No 393
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.15 E-value=62 Score=22.42 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHHHcC------CCceEEEEEeChhh
Q psy832 5 KPSPFLLLDEIDAAL----------DNINIWKTIQYIRTV------PKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlDEp~~~L----------D~~~~~~i~~~l~~~------~~~~ii~ish~~~~ 48 (80)
..|.++++||..+-. +......+..+|..+ .+.-+|..|.+++.
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 357899999987532 223333444455544 24567777876544
No 394
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=26.09 E-value=1.1e+02 Score=19.49 Aligned_cols=37 Identities=5% Similarity=0.031 Sum_probs=28.3
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID-AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~-~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 36 ~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 76 (277)
T 4di1_A 36 TLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGG 76 (277)
T ss_dssp EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 46677775 899999999999999887 35566666643
No 395
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=25.95 E-value=1.5e+02 Score=19.64 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=30.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--C----------CceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--P----------KMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~----------~~~ii~ish~ 45 (80)
+...|+|||... |++..+.++++.|.+- . +..+|..|+.
T Consensus 222 ~~gtlfldei~~-l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 222 DQGTLFLDEVGE-LDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp TTSEEEEETGGG-SCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS
T ss_pred CCCeEEecChhh-CCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC
Confidence 446899999865 8999999999999864 1 3458888884
No 396
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=25.91 E-value=1.1e+02 Score=19.37 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=28.6
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-| -++|+.+...++.+.+.+. ....+|++|-.
T Consensus 17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 58 (266)
T 3fdu_A 17 TLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGA 58 (266)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 5668888 4899999999999999887 34556666643
No 397
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=25.86 E-value=79 Score=16.53 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=25.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+|+++|+|--..+.|. ..+++.+++. .+..+|++|..
T Consensus 46 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 46 HPPDVLISDVNMDGMDG---YALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp SCCSEEEECSSCSSSCH---HHHHHHHHHSTTTTTCCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCCccCCCCEEEEeCC
Confidence 46899999977666553 4455666664 36677777764
No 398
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=25.65 E-value=1.6e+02 Score=19.96 Aligned_cols=40 Identities=5% Similarity=0.021 Sum_probs=22.3
Q ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALD-NINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD-~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
.++.++++||....=+ .+.-..+...+... ++..+++.|.
T Consensus 272 ~~~~~viiDE~a~~~~~~el~~al~~~ls~~~~~kiiiiSTP 313 (385)
T 2o0j_A 272 NSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITTTP 313 (385)
T ss_dssp SCCSEEEEESGGGSTTHHHHHHHHHHHHHSTTCCEEEEEECC
T ss_pred CCCCEEEechhhhcCCCHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence 4568999999987655 23233332333322 3455556665
No 399
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=25.60 E-value=79 Score=16.43 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. ..+++.+++. .+..+|++|..
T Consensus 50 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 50 NPHHLVISDFNMPKMDG---LGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp SCCSEEEECSSSCSSCH---HHHHHHHTTCTTSTTCEEEECCSC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcCccccCCCEEEEeCC
Confidence 36899999987766664 3456666654 45667777754
No 400
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=25.51 E-value=80 Score=16.49 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=25.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
..|+++++|--..+.+. ..+++.+++. .+..+|++|..
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~~~~~pii~ls~~ 94 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKSDPTLKRIPVVVLSTS 94 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHHSTTGGGSCEEEEESC
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHcCcccccccEEEEecC
Confidence 57899999987766654 3455566654 34567776653
No 401
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=25.42 E-value=77 Score=16.28 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
.|+++++|--..+.|. ..+++.+++. ....+|++|.
T Consensus 45 ~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 45 KPDLILMDIQLPEISG---LEVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp CCSEEEEESBCSSSBH---HHHHHHHHHSTTTTTSCEEEEC-
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHcCccccCCcEEEEEC
Confidence 5899999987766664 3455666654 3556777664
No 402
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3
Probab=25.42 E-value=1e+02 Score=19.42 Aligned_cols=37 Identities=5% Similarity=-0.086 Sum_probs=28.3
Q ss_pred EEEEeCC-CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI-DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp-~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-| -++|+.+...++.+.+.+. ....+|++|-.
T Consensus 23 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 63 (264)
T 1wz8_A 23 EITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGE 63 (264)
T ss_dssp EEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEG
T ss_pred EEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC
Confidence 4567888 6999999999999999887 34556666653
No 403
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.36 E-value=1.2e+02 Score=18.30 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
.+|+++|+|=-..+.|. .++++.+++. .+..+|++|..
T Consensus 66 ~~~dlvllD~~lp~~~g---~~~~~~lr~~~~~~~ii~lt~~ 104 (250)
T 3r0j_A 66 TRPDAVILDVXMPGMDG---FGVLRRLRADGIDAPALFLTAR 104 (250)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHHTTCCCCEEEEECS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCEEEEECC
Confidence 36899999977666663 4456667766 56677777764
No 404
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=25.24 E-value=1.1e+02 Score=19.34 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=28.8
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 62 (265)
T 3kqf_A 21 KISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGA 62 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 57788885 899999999999999887 34556666653
No 405
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=25.24 E-value=63 Score=19.40 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=14.5
Q ss_pred HHHHHHHHcC----CCceEEEEEeChh
Q psy832 25 WKTIQYIRTV----PKMNVIAVSLKPQ 47 (80)
Q Consensus 25 ~~i~~~l~~~----~~~~ii~ish~~~ 47 (80)
.++...+.++ .+.++++|||..-
T Consensus 129 ~R~~~~l~~l~~~~~~~~vlvVsHg~~ 155 (208)
T 2a6p_A 129 DRADSAVALALEHMSSRDVLFVSHGHF 155 (208)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCHHH
Confidence 3444445444 3568999999743
No 406
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=25.15 E-value=80 Score=16.31 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=25.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. .++++.+++. .+..+|++|..
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 85 (127)
T 2jba_A 45 PWPDLILLAWMLPGGSG---IQFIKHLRRESMTRDIPVVMLTAR 85 (127)
T ss_dssp SCCSEEEEESEETTEEH---HHHHHHHHTSTTTTTSCEEEEEET
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhCcccCCCCEEEEeCC
Confidence 46899999976655543 3456666654 45667777764
No 407
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=25.08 E-value=1.1e+02 Score=19.19 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=28.5
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 24 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~ 65 (258)
T 3lao_A 24 LIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAH 65 (258)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 56788885 799999999999999887 34556666643
No 408
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=25.00 E-value=1.6e+02 Score=19.77 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=24.5
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
+++-.++|+||...- ++..... ...+.+. .+.++++.|=
T Consensus 91 ~~~l~~vViDEaH~~-~~~~~~~-~~~l~~~~~~~~~~~l~~SA 132 (431)
T 2v6i_A 91 VPNYNLYIMDEAHFL-DPASVAA-RGYIETRVSMGDAGAIFMTA 132 (431)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHH-HHHHHHHHHTTSCEEEEEES
T ss_pred ccCCCEEEEeCCccC-CccHHHH-HHHHHHHhhCCCCcEEEEeC
Confidence 566789999999985 6544332 2333332 4667777664
No 409
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=24.98 E-value=86 Score=16.63 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
..|+++|+|--..+.+. ..+++.+++. .+..+|++|..
T Consensus 58 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG---IEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTTSCH---HHHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcCccccCCcEEEEeCC
Confidence 46899999977666653 3556666655 45677777764
No 410
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=24.93 E-value=95 Score=17.14 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=32.5
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhhH
Q psy832 6 PSPFLLLD-EIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFY 49 (80)
Q Consensus 6 ~~~illlD-Ep~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~~ 49 (80)
+++.+++| .-...+|......+....+.. .|..++++.=++...
T Consensus 42 ~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~p~va 88 (123)
T 3zxn_A 42 AGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAVA 88 (123)
T ss_dssp CCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCCHHHH
T ss_pred CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 56778888 677777888888888877776 566777776666654
No 411
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.82 E-value=86 Score=16.61 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=25.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
..|+++|+|--..+.|. .++++.+++. .+..+|++|..
T Consensus 61 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~t~~ 101 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG---REVLQEIKQDEVLKKIPVVIMTTS 101 (149)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHTTSTTGGGSCEEEEESC
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhCcccCCCeEEEEeCC
Confidence 57899999987766664 3556666654 34566666653
No 412
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=24.65 E-value=44 Score=18.43 Aligned_cols=20 Identities=25% Similarity=-0.034 Sum_probs=9.5
Q ss_pred CCCCCCCHHHHHHHHHHHHc
Q psy832 14 EIDAALDNINIWKTIQYIRT 33 (80)
Q Consensus 14 Ep~~~LD~~~~~~i~~~l~~ 33 (80)
.+...||..+...+.+.+.+
T Consensus 20 ~l~G~L~f~~a~~~~~~l~~ 39 (130)
T 2kln_A 20 RYDAPLCFANAEDFRRRALT 39 (130)
T ss_dssp ECCSCCBTTTHHHHHHHHHH
T ss_pred EECCceEechHHHHHHHHHH
Confidence 34444555555555444444
No 413
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=24.60 E-value=14 Score=23.00 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=20.6
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIR 32 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~ 32 (80)
...+|+|++=||..++-|.-..+++.+.|.
T Consensus 68 ~n~n~dIvF~deE~tgadR~Mt~Rc~~kL~ 97 (187)
T 3k7i_B 68 PNYNPDIIFKDEENTGADRLMTQRCKDRLN 97 (187)
T ss_dssp ECCCTTEEECCTTSSSGGGEECHHHHHHHH
T ss_pred ccCCCceEecCccCCCcchhhCHHHHHHHH
Confidence 346899999999988876655444444433
No 414
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=24.57 E-value=16 Score=21.25 Aligned_cols=37 Identities=3% Similarity=-0.201 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHcC-CCceEEEEEeChhhHhcCceE
Q psy832 19 LDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDIL 55 (80)
Q Consensus 19 LD~~~~~~i~~~l~~~-~~~~ii~ish~~~~~~~~d~~ 55 (80)
+|+.....+.+.++.+ ....+++.|++......++++
T Consensus 132 ld~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 132 SDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp CCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred CCHHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHH
Confidence 6888888888877776 322344555533333334444
No 415
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=24.50 E-value=92 Score=20.47 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=31.2
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeChhhH
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKPQFY 49 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~~~~ 49 (80)
.+-||-|. ++|+.....++.+.+... ....+|++|-....+
T Consensus 47 ~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~F 92 (333)
T 3njd_A 47 RITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGF 92 (333)
T ss_dssp EEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSS
T ss_pred EEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCce
Confidence 56788885 899999999999999887 455667776654433
No 416
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=24.49 E-value=96 Score=17.02 Aligned_cols=40 Identities=8% Similarity=-0.054 Sum_probs=28.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
.-+.-+.++--.+.|+++....+.++...+ .+..+.++.|
T Consensus 3 ~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Gh 45 (118)
T 2hqs_H 3 QQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGH 45 (118)
T ss_dssp -CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 445667788888889988877665554443 4567888888
No 417
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}
Probab=24.47 E-value=1.1e+02 Score=20.43 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=28.6
Q ss_pred CEEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 8 PFLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 8 ~illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
.++-|+-|. ++|+.....++.+.+.+. ....+|++|-
T Consensus 20 a~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg 61 (353)
T 4hdt_A 20 GLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTG 61 (353)
T ss_dssp EEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 356788875 799999999999999987 3555666664
No 418
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=24.35 E-value=1.1e+02 Score=19.65 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.7
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeCh
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLKP 46 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~~ 46 (80)
++-|+-|. ++|+.....++.+.+.+. .+..+|++|-.-
T Consensus 40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G 82 (289)
T 3t89_A 40 KITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAG 82 (289)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC
Confidence 56788886 799999999999999887 455666666643
No 419
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=24.00 E-value=60 Score=18.61 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=24.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
..|+++|+|=-..+.|. -++++.+++. .+..+|++|-.
T Consensus 50 ~~~dlvl~D~~lp~~~g---~~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 50 EKFEFITVXLHLGNDSG---LSLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp SCCSEEEECSEETTEES---HHHHHHHHHHCTTCEEEEEESS
T ss_pred CCCCEEEEeccCCCccH---HHHHHHHHhcCCCCCEEEEeCC
Confidence 46899999965555442 3455556655 66777777764
No 420
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=23.94 E-value=1e+02 Score=20.93 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=29.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
.+||.|+-+.+-|+..+..+.+++... .|..+.++|.+
T Consensus 310 tLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~ 349 (390)
T 3mca_B 310 ELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSL 349 (390)
T ss_dssp SCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred EEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 478999999888988777777666555 67778888764
No 421
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=23.89 E-value=1.5e+02 Score=19.07 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=30.7
Q ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEE
Q psy832 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVS 43 (80)
Q Consensus 3 ~~~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~is 43 (80)
.+++-+++|++....-++.+..+.+.+++++ |..++.+-
T Consensus 55 ~L~~~D~vV~~~~~~~l~~~~~~~l~~yV~~--Ggglv~~H 93 (281)
T 4e5v_A 55 DFSPYQLVVLDYNGDSWPEETNRRFLEYVQN--GGGVVIYH 93 (281)
T ss_dssp CCTTCSEEEECCCSSCCCHHHHHHHHHHHHT--TCEEEEEG
T ss_pred hhhcCCEEEEeCCCCcCCHHHHHHHHHHHHc--CCCEEEEe
Confidence 3567899999997788899998888888875 66666663
No 422
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=23.61 E-value=1.1e+02 Score=19.07 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=28.5
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
.+-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~~~vr~vVltg~ 59 (254)
T 3isa_A 19 TFTLSRPEKRNALSAELVEALIDGVDAAHREQVPLLVFAGA 59 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 56778885 999999999999999877 45555666554
No 423
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=23.59 E-value=52 Score=23.45 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=23.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEe
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSL 44 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish 44 (80)
+.+++|.||. +.+|......+ ++.. .+..+|++--
T Consensus 279 ~~dvlIIDEa-sml~~~~~~~L---l~~~~~~~~lilvGD 314 (574)
T 3e1s_A 279 PYDLLIVDEV-SMMGDALMLSL---LAAVPPGARVLLVGD 314 (574)
T ss_dssp SCSEEEECCG-GGCCHHHHHHH---HTTSCTTCEEEEEEC
T ss_pred cCCEEEEcCc-cCCCHHHHHHH---HHhCcCCCEEEEEec
Confidence 5689999997 46887644443 3434 5677777753
No 424
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=23.58 E-value=90 Score=19.82 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHc
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRT 33 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~ 33 (80)
.++++||... +++.....+.+.+.+
T Consensus 111 ~vl~iDEi~~-~~~~~~~~Ll~~l~~ 135 (331)
T 2r44_A 111 NFILADEVNR-SPAKVQSALLECMQE 135 (331)
T ss_dssp SEEEEETGGG-SCHHHHHHHHHHHHH
T ss_pred cEEEEEcccc-CCHHHHHHHHHHHhc
Confidence 6999999765 788888888888875
No 425
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=23.58 E-value=79 Score=19.07 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 17 AALDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
+|..+.....+.+.+++. .....|++||
T Consensus 64 ~G~~~~~~~~l~~~l~~~~~~~i~~vi~TH 93 (243)
T 4hl2_A 64 TAWTDDQTAQILNWIKQEINLPVALAVVTH 93 (243)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred CCCCCccHHHHHHHHHHhhCCCeeEEEECC
Confidence 455666777888888774 4567799999
No 426
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.58 E-value=89 Score=16.30 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=25.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
.+|+++++|=-..+.|. .++++.+++. .+..+|++|-.
T Consensus 45 ~~~dlvllD~~~p~~~g---~~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 45 FTPDLIVLXIMMPVMDG---FTVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp BCCSEEEECSCCSSSCH---HHHHHHHHTSTTTTTSCEEEEESC
T ss_pred cCCCEEEEeccCCCCcH---HHHHHHHHhcccccCCCEEEEecC
Confidence 46899999976666664 3456666654 35667777753
No 427
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=23.57 E-value=97 Score=16.77 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=24.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeC
Q psy832 7 SPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLK 45 (80)
Q Consensus 7 ~~illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~ 45 (80)
++++|+|--..+.|. ..+++.+++. ....+|++|-.
T Consensus 49 ~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 85 (151)
T 3kcn_A 49 FSVIMVDMRMPGMEG---TEVIQKARLISPNSVYLMLTGN 85 (151)
T ss_dssp CSEEEEESCCSSSCH---HHHHHHHHHHCSSCEEEEEECG
T ss_pred CCEEEEeCCCCCCcH---HHHHHHHHhcCCCcEEEEEECC
Confidence 499999977766653 3455556665 66777777764
No 428
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=23.43 E-value=1.5e+02 Score=18.83 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=28.1
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 33 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~ 73 (264)
T 3he2_A 33 TIELQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQ 73 (264)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHCC---CCSEEEEEES
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCceEEEEECC
Confidence 56778885 899999999999999988 34445666543
No 429
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.32 E-value=82 Score=19.74 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCCCC------HHHHHHHHHHHHcCCCceEEEEEeCh
Q psy832 6 PSPFLLLDEIDAALD------NINIWKTIQYIRTVPKMNVIAVSLKP 46 (80)
Q Consensus 6 ~~~illlDEp~~~LD------~~~~~~i~~~l~~~~~~~ii~ish~~ 46 (80)
+|-++++||....-+ +.....+...+....+..+|+++...
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~ 174 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEV 174 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcH
Confidence 377899999876543 22222222222222466777776653
No 430
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=23.18 E-value=85 Score=15.94 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=22.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~ 45 (80)
+|+++++|--..+.|.. .+.+.+++.....+|++|..
T Consensus 45 ~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 45 QPDIIILDLMLPEIDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp CCSEEEECSSCSSSCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred CCCEEEEeccCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 58999999876666643 34444543334556666643
No 431
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=22.85 E-value=81 Score=21.20 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCCHHH-----------HHHHHHHHHcC---CCceEEEEEe
Q psy832 9 FLLLDEIDAALDNIN-----------IWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 9 illlDEp~~~LD~~~-----------~~~i~~~l~~~---~~~~ii~ish 44 (80)
++++||..+--.... ..+++..|... .+.++|++++
T Consensus 185 LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 185 VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 999999887533221 22333333333 4778888876
No 432
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=22.81 E-value=1.3e+02 Score=18.90 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=27.9
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-| -++|+.+...++.+.+.+. ....+|++|-.
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 57 (263)
T 3lke_A 16 YITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSK 57 (263)
T ss_dssp EEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEES
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcC
Confidence 5667877 5899999999999999887 34455555543
No 433
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=22.79 E-value=81 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=25.6
Q ss_pred cCCCCEEEEeCCCCCCCHHHH---HHHHHHHHcC-----CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINI---WKTIQYIRTV-----PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~---~~i~~~l~~~-----~~~~ii~ish 44 (80)
+++-.++|+||...-+|.... ..+...+... .+.++++.|=
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SA 272 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSA 272 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEES
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEc
Confidence 355689999999988875433 3344444432 2566777664
No 434
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=22.77 E-value=65 Score=18.46 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=15.5
Q ss_pred HHHHHHHHcC---CCceEEEEEeChh
Q psy832 25 WKTIQYIRTV---PKMNVIAVSLKPQ 47 (80)
Q Consensus 25 ~~i~~~l~~~---~~~~ii~ish~~~ 47 (80)
.++.+.+.++ .+.++++|||..-
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~~ 111 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLPL 111 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTH
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 4555555554 3668999999754
No 435
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=22.68 E-value=98 Score=16.48 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~ 45 (80)
..|+++++|--..+.|. ..+++.+++.....+|++|..
T Consensus 47 ~~~dlvllD~~l~~~~g---~~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 47 NKYDLIFLEIILSDGDG---WTLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp CCCSEEEEESEETTEEH---HHHHHHHHTTCCCCEEEEESC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHccCCCCCEEEEEcC
Confidence 36899999976665553 345566665434556666653
No 436
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Probab=22.35 E-value=1.2e+02 Score=20.15 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=29.0
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.....++.+.+.+. ....+|++|-.
T Consensus 18 ~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~ 59 (363)
T 3bpt_A 18 VITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGA 59 (363)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEET
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 56688885 899999999999999887 35556666653
No 437
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=22.34 E-value=93 Score=22.54 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=25.7
Q ss_pred EEEEeCCCCCCC---HHHHHHHHHHHHcC--CCceEEEEEeChh
Q psy832 9 FLLLDEIDAALD---NINIWKTIQYIRTV--PKMNVIAVSLKPQ 47 (80)
Q Consensus 9 illlDEp~~~LD---~~~~~~i~~~l~~~--~~~~ii~ish~~~ 47 (80)
++++||...-+. ......+.++.+.- .|..+|++|+++.
T Consensus 346 vvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 346 VVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred EEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 899999976543 22333343444433 5899999999876
No 438
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}
Probab=22.30 E-value=1.3e+02 Score=20.54 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=29.4
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|- ++|+.....++.+.+.+. ....+|++|-.
T Consensus 54 ~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~ 95 (407)
T 3ju1_A 54 VVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGS 95 (407)
T ss_dssp EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEES
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 57788886 799999999999999887 45566666654
No 439
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=22.29 E-value=1.3e+02 Score=18.70 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=22.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHcC--CCceEEEEE
Q psy832 13 DEIDAALDNINIWKTIQYIRTV--PKMNVIAVS 43 (80)
Q Consensus 13 DEp~~~LD~~~~~~i~~~l~~~--~~~~ii~is 43 (80)
|+.+..+|++....+.+.+..+ .+..+++|+
T Consensus 21 ~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVh 53 (252)
T 1z9d_A 21 GEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVI 53 (252)
T ss_dssp CSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 3334568888999999888887 466766665
No 440
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=22.23 E-value=93 Score=19.52 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=28.5
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 59 (255)
T 3p5m_A 18 RIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA 59 (255)
T ss_dssp EEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC
Confidence 56678886 789999999999999887 34556666653
No 441
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.22 E-value=18 Score=23.43 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=22.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEEeCh
Q psy832 9 FLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKP 46 (80)
Q Consensus 9 illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~ish~~ 46 (80)
++++||............++..+... .+..+|++|++.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 99999986542211122214444444 677888888865
No 442
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=22.20 E-value=1.4e+02 Score=18.09 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=22.5
Q ss_pred CCCEEEEeCCCC-------C----CCH--HHHHHHHHHHHcC---CCceEEEEEeChh
Q psy832 6 PSPFLLLDEIDA-------A----LDN--INIWKTIQYIRTV---PKMNVIAVSLKPQ 47 (80)
Q Consensus 6 ~~~illlDEp~~-------~----LD~--~~~~~i~~~l~~~---~~~~ii~ish~~~ 47 (80)
.|.++++||..+ + .+. .....++..+... .+..+|.+|+.++
T Consensus 104 ~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 104 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 356999999722 1 111 2233444444443 3456777777654
No 443
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=22.10 E-value=1.9e+02 Score=19.63 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=27.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEeChhhH
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFY 49 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish~~~~~ 49 (80)
..+++++|-|.++++....+.+ ..++...++++|.++..+
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~~l----~~l~p~givyvsc~p~tl 392 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVKRL----NREKPGVIVYVSCNPETF 392 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHHHH----HHHCCSEEEEEESCHHHH
T ss_pred CCCEEEEcCCccchHHHHHHHH----HhcCCCcEEEEECChHHH
Confidence 4589999999999986554443 334334688888886554
No 444
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=21.95 E-value=99 Score=16.24 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=29.2
Q ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeChhh
Q psy832 5 KPSPFLLLD-EIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQF 48 (80)
Q Consensus 5 ~~~~illlD-Ep~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~~~ 48 (80)
.+|+.+++| .....+|......+....+++ .|..+.++.-++..
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 88 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNEAS 88 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHHHHH
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 355666666 456667888888888877777 66666666544443
No 445
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=21.88 E-value=35 Score=23.88 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=25.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHH---HHHHHHHHcC-----CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINI---WKTIQYIRTV-----PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~---~~i~~~l~~~-----~~~~ii~ish 44 (80)
+..-.++|+||...-+|.... ..+...+... .+.++++.|=
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SA 221 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSA 221 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEES
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEec
Confidence 345689999999988875433 3344444332 2556777664
No 446
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=21.85 E-value=82 Score=18.95 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=14.7
Q ss_pred HHHHHHHHHcC---CCceEEEEEeCh
Q psy832 24 IWKTIQYIRTV---PKMNVIAVSLKP 46 (80)
Q Consensus 24 ~~~i~~~l~~~---~~~~ii~ish~~ 46 (80)
.+++...+.++ ...++++|||..
T Consensus 126 ~~R~~~~l~~l~~~~~~~vlvVsHg~ 151 (213)
T 3hjg_A 126 SQRVSRAWSQIINDINDNLLIVTHGG 151 (213)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence 44555555554 236899999963
No 447
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=21.84 E-value=1e+02 Score=16.34 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=25.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHc-C-CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRT-V-PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~-~-~~~~ii~ish~ 45 (80)
..|+++++|=-..+.|. -++.+.+++ . ....+|++|..
T Consensus 51 ~~~dlvllD~~mp~~~G---~~~~~~lr~~~~~~~~ii~lt~~ 90 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDG---LLSTKMIRRDLGYTSPIVALTAF 90 (133)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHHHHSCCCSCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCh---HHHHHHHHhhcCCCCCEEEEECC
Confidence 46899999977666664 345566665 3 45567776653
No 448
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=21.78 E-value=89 Score=18.75 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=19.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHcC-C-CceEEEEEe
Q psy832 9 FLLLDEIDAALDNINIWKTIQYIRTV-P-KMNVIAVSL 44 (80)
Q Consensus 9 illlDEp~~~LD~~~~~~i~~~l~~~-~-~~~ii~ish 44 (80)
.+|+| +|..+.....+.+.+++. . ....|++||
T Consensus 42 ~iLiD---~G~~~~~~~~l~~~l~~~~~~~~~~vi~TH 76 (246)
T 2fhx_A 42 VVIVS---SPFENLGTQTLMDWVAKTMKPKKVVAINTH 76 (246)
T ss_dssp EEEES---CCSSHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred EEEEe---CCCCHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 55556 344555666677777664 2 222478898
No 449
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=21.74 E-value=1.2e+02 Score=18.88 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 17 AALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
.++|++..+.+.+.+..+ .+..+++|+--
T Consensus 25 ~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gG 55 (240)
T 4a7w_A 25 FGIDIHVLDHIAKEIKSLVENDIEVGIVIGG 55 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 468999999999988887 67777777543
No 450
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=21.74 E-value=60 Score=19.71 Aligned_cols=11 Identities=27% Similarity=0.081 Sum_probs=9.1
Q ss_pred CceEEEEEeCh
Q psy832 36 KMNVIAVSLKP 46 (80)
Q Consensus 36 ~~~ii~ish~~ 46 (80)
+..+++|||..
T Consensus 174 ~~~vlvVsHg~ 184 (237)
T 3r7a_A 174 GGNVLVVVHGL 184 (237)
T ss_dssp CEEEEEEECHH
T ss_pred CCeEEEEcCHH
Confidence 67899999963
No 451
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=21.72 E-value=1.7e+02 Score=18.80 Aligned_cols=36 Identities=3% Similarity=0.016 Sum_probs=27.0
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 9 FLLLDEID-AALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 9 illlDEp~-~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
++-|+-|- ++|+.....++.+.+.+. ....+|++|-
T Consensus 20 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 59 (289)
T 3h0u_A 20 SATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDS 59 (289)
T ss_dssp EEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 46677764 899999999999999987 3444555554
No 452
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=21.70 E-value=1.4e+02 Score=18.81 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=28.7
Q ss_pred CEEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 8 PFLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 8 ~illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
-++-||-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 21 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~ 63 (263)
T 3moy_A 21 GLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGS 63 (263)
T ss_dssp EEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 357788886 699999999999999887 34556666543
No 453
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=21.70 E-value=1.4e+02 Score=17.93 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=32.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHcC-CCceEEEEE----eChhhHhcCceEEEEe
Q psy832 9 FLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVS----LKPQFYFHSDILFGIT 59 (80)
Q Consensus 9 illlDEp~~~LD~~~~~~i~~~l~~~-~~~~ii~is----h~~~~~~~~d~~~~i~ 59 (80)
+++|||--..++...-.+.++-+... ...-+++|- ++.+....||..+.+.
T Consensus 73 vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~rA~~~lSlS 128 (167)
T 1to0_A 73 VIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFS 128 (167)
T ss_dssp EEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHHCSEEEESC
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHhhCcEEEcc
Confidence 78899999999877666655544433 122334443 3456666788776553
No 454
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=21.55 E-value=1.5e+02 Score=18.65 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=28.7
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 62 (265)
T 3swx_A 21 VIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGE 62 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC
Confidence 57788884 899999999999999887 34556666654
No 455
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=21.49 E-value=1e+02 Score=16.36 Aligned_cols=38 Identities=11% Similarity=0.256 Sum_probs=25.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEeC
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSLK 45 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish~ 45 (80)
..|+++|+|=-..+.|. .++++.+++. ....+|++|-.
T Consensus 47 ~~~dlvl~D~~lp~~~g---~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 47 NLPDALICDVLLPGIDG---YTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHSGGGTTCCEEEEECT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcCCCcCCccEEEEecC
Confidence 46899999987777764 3455556653 45667777754
No 456
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=21.34 E-value=1.3e+02 Score=20.06 Aligned_cols=30 Identities=10% Similarity=-0.090 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHcC--CCceEEEEEeCh
Q psy832 17 AALDNINIWKTIQYIRTV--PKMNVIAVSLKP 46 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~--~~~~ii~ish~~ 46 (80)
..++.+....+.+.+.+. .+..+|+++|.+
T Consensus 214 g~~~~~ql~wL~~~L~~~~~~~~~~Iv~~H~p 245 (443)
T 2xmo_A 214 GGLTAGTLDWIKESSALAKKNGAKLIPVLHHN 245 (443)
T ss_dssp BCCCHHHHHHHHHHHHHHHHTTCEEEEECSSB
T ss_pred CccCHHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 457777777777777766 466788888975
No 457
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=21.22 E-value=72 Score=19.04 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 17 AALDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 17 ~~LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
++.+......+.+.+++. .....|++||
T Consensus 57 ~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH 86 (227)
T 1mqo_A 57 SSWDDKLTKELIEMVEKKFQKRVTDVIITH 86 (227)
T ss_dssp CCSSHHHHHHHHHHHHHHHTSCEEEEECCC
T ss_pred CCCChHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 445555456677777664 5677899999
No 458
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=21.21 E-value=1.8e+02 Score=19.62 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=24.1
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 4 ~~~~~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
+++-.++|+||...- |...... ..++.+. .+.++++.|=
T Consensus 97 ~~~l~~vViDEah~~-~~~~~~~-~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 97 VVNWEVIIMDEAHFL-DPASIAA-RGWAAHRARANESATILMTA 138 (440)
T ss_dssp CCCCSEEEETTTTCC-SHHHHHH-HHHHHHHHHTTSCEEEEECS
T ss_pred ccCccEEEEECcccc-CcchHHH-HHHHHHHhccCCceEEEEeC
Confidence 567799999999986 6544322 2222222 4567777664
No 459
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=21.02 E-value=89 Score=19.81 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=27.6
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 8 PFLLLDEI--DAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 8 ~illlDEp--~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
-++-||-| -++|+.....++.+.+.+. ....+|++|-
T Consensus 23 ~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 64 (272)
T 1hzd_A 23 VVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRS 64 (272)
T ss_dssp EEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred EEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 35667888 4899999999999999887 3445555554
No 460
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=20.98 E-value=1.3e+02 Score=18.84 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHcC--CCceEEEEEe
Q psy832 16 DAALDNINIWKTIQYIRTV--PKMNVIAVSL 44 (80)
Q Consensus 16 ~~~LD~~~~~~i~~~l~~~--~~~~ii~ish 44 (80)
..++|++....+.+.+.++ .+..+++|+-
T Consensus 26 ~~~~~~~~i~~la~~i~~l~~~G~~vviV~g 56 (243)
T 3ek6_A 26 DYGIDPKVINRLAHEVIEAQQAGAQVALVIG 56 (243)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3479999999999988887 5777777753
No 461
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.94 E-value=1e+02 Score=15.96 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=23.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHcCCCceEEEEEe
Q psy832 5 KPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSL 44 (80)
Q Consensus 5 ~~~~illlDEp~~~LD~~~~~~i~~~l~~~~~~~ii~ish 44 (80)
.+|+++++|=-..+.| ..++++.+++..+..+|++|.
T Consensus 45 ~~~dlii~D~~~p~~~---g~~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 45 LQPDLILLDIMLPNKD---GVEVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp TCCSEEEEETTSTTTH---HHHHHHHHHTTCCSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhcCCCCEEEEEC
Confidence 4689999997666554 345566666553455666665
No 462
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=20.92 E-value=1.4e+02 Score=18.44 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=22.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHcC--CCceEEEEE
Q psy832 13 DEIDAALDNINIWKTIQYIRTV--PKMNVIAVS 43 (80)
Q Consensus 13 DEp~~~LD~~~~~~i~~~l~~~--~~~~ii~is 43 (80)
|+....+|++....+.+.+..+ .+..+++|+
T Consensus 22 ~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVh 54 (247)
T 2a1f_A 22 GEDGLGIDPAILDRMAVEIKELVEMGVEVSVVL 54 (247)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3334568888999999888877 466666665
No 463
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=20.92 E-value=1.1e+02 Score=19.32 Aligned_cols=37 Identities=8% Similarity=0.236 Sum_probs=29.1
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 9 FLLLDEID--AALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 9 illlDEp~--~~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
++-|+-|. ++|+.+...++.+.+.+. ....+|++|-.
T Consensus 19 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~ 59 (267)
T 3hp0_A 19 YITFHRPEANNTINDTLIEECLQVLNQCETSTVTVVVLEGL 59 (267)
T ss_dssp EEEECCGGGTTCBCSHHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 56788886 799999999999999887 35566666654
No 464
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.55 E-value=1.1e+02 Score=16.10 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHcC--CCceEEEEEeC
Q psy832 6 PSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLK 45 (80)
Q Consensus 6 ~~~illlDEp~~~LD~~~~~~i~~~l~~~--~~~~ii~ish~ 45 (80)
+|+++|+|--..+.|. ..+++.+++. ....+|++|-.
T Consensus 52 ~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 52 RIGLMITDLRMQPESG---LDLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp TEEEEEECSCCSSSCH---HHHHHHHHTSTTTTCEEEEEESS
T ss_pred CCcEEEEeccCCCCCH---HHHHHHHHhcCCCCCCEEEEeCC
Confidence 3789999987766653 3455666664 45677777764
No 465
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=20.21 E-value=88 Score=18.16 Aligned_cols=36 Identities=8% Similarity=0.214 Sum_probs=26.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHcC---CCceEEEEEe
Q psy832 8 PFLLLDEIDAALDNINIWKTIQYIRTV---PKMNVIAVSL 44 (80)
Q Consensus 8 ~illlDEp~~~LD~~~~~~i~~~l~~~---~~~~ii~ish 44 (80)
.-.+.|+. .-|+...+.++-+.|+++ .+.++.+++=
T Consensus 15 ~~~V~D~A-~vLs~~~~~~l~~~l~~le~~t~~qi~Vvtv 53 (153)
T 3pvh_A 15 ETYVVDDA-GVLSRVTKSDLKKLLSDLEYRKKLRLNFITV 53 (153)
T ss_dssp TTSEEETT-CCSCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CcEEEeCC-CCCCHHHHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 34566765 568999999999999988 3566655553
No 466
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=20.06 E-value=42 Score=20.55 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=14.0
Q ss_pred HHHHHHHHcC----C-CceEEEEEeChh
Q psy832 25 WKTIQYIRTV----P-KMNVIAVSLKPQ 47 (80)
Q Consensus 25 ~~i~~~l~~~----~-~~~ii~ish~~~ 47 (80)
.++...+.++ . +.++++|||..-
T Consensus 139 ~Rv~~~l~~l~~~~~~~~~vlvVsHg~~ 166 (219)
T 2qni_A 139 ARIVEAVKAVLDRHDARQPIAFVGHGGV 166 (219)
T ss_dssp HHHHHHHHHHHHTCCTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCHHH
Confidence 4444445444 2 358999999743
Done!