Your job contains 1 sequence.
>psy832
MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSDILFGITL
KMLGSLTIKGRVHKASLNSV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy832
(80 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0040283 - symbol:SMC1 "SMC1" species:7227 "Drosoph... 155 8.5e-10 1
ZFIN|ZDB-GENE-090506-9 - symbol:smc1a "structural mainten... 151 2.3e-09 1
ZFIN|ZDB-GENE-040426-57 - symbol:smc1al "structural maint... 151 2.3e-09 1
UNIPROTKB|O93308 - symbol:smc1a "Structural maintenance o... 147 6.0e-09 1
UNIPROTKB|Q8NDV3 - symbol:SMC1B "Structural maintenance o... 145 9.9e-09 1
UNIPROTKB|G3X7C0 - symbol:SMC1A "Structural maintenance o... 143 1.6e-08 1
UNIPROTKB|O97593 - symbol:SMC1A "Structural maintenance o... 143 1.6e-08 1
UNIPROTKB|E2QV07 - symbol:SMC1A "Structural maintenance o... 143 1.6e-08 1
UNIPROTKB|Q14683 - symbol:SMC1A "Structural maintenance o... 143 1.6e-08 1
UNIPROTKB|F1SM58 - symbol:F1SM58 "Structural maintenance ... 143 1.6e-08 1
UNIPROTKB|F2Z5A8 - symbol:LOC100523938 "Structural mainte... 143 1.6e-08 1
MGI|MGI:1344345 - symbol:Smc1a "structural maintenance of... 143 1.6e-08 1
RGD|61991 - symbol:Smc1a "structural maintenance of chrom... 143 1.6e-08 1
UNIPROTKB|Q9Z1M9 - symbol:Smc1a "Structural maintenance o... 143 1.6e-08 1
UNIPROTKB|F1N6C8 - symbol:SMC1B "Structural maintenance o... 143 1.6e-08 1
UNIPROTKB|I3LMC6 - symbol:LOC100523938 "Structural mainte... 143 1.6e-08 1
UNIPROTKB|F6V533 - symbol:SMC1B "Uncharacterized protein"... 142 1.8e-08 1
DICTYBASE|DDB_G0291752 - symbol:smc1 "structural maintena... 143 1.8e-08 1
UNIPROTKB|E2QRT5 - symbol:SMC1B "Structural maintenance o... 142 2.1e-08 1
MGI|MGI:2154049 - symbol:Smc1b "structural maintenance of... 138 5.6e-08 1
RGD|1308791 - symbol:Smc1b "structural maintenance of chr... 137 7.1e-08 1
WB|WBGene00001860 - symbol:him-1 species:6239 "Caenorhabd... 134 1.5e-07 1
UNIPROTKB|F1NX72 - symbol:SMC1B "Structural maintenance o... 132 2.4e-07 1
UNIPROTKB|F1NX73 - symbol:SMC1B "Structural maintenance o... 132 2.4e-07 1
ASPGD|ASPL0000036762 - symbol:AN2963 species:162425 "Emer... 132 2.5e-07 1
CGD|CAL0001080 - symbol:SMC1 species:5476 "Candida albica... 131 3.1e-07 1
POMBASE|SPBC29A10.04 - symbol:psm1 "mitotic cohesin compl... 126 1.0e-06 1
SGD|S000001886 - symbol:SMC1 "Subunit of the multiprotein... 122 2.8e-06 1
POMBASE|SPBC146.03c - symbol:cut3 "condensin complex subu... 108 9.4e-05 1
UNIPROTKB|P51834 - symbol:smc "Chromosome partition prote... 103 0.00028 1
TIGR_CMR|BA_3986 - symbol:BA_3986 "chromosome segregation... 103 0.00028 1
UNIPROTKB|Q81ZL2 - symbol:smc "Chromosome partition prote... 102 0.00035 1
TIGR_CMR|CBU_0540 - symbol:CBU_0540 "SMC family protein" ... 102 0.00035 1
UNIPROTKB|Q10970 - symbol:smc "Chromosome partition prote... 102 0.00037 1
TAIR|locus:2079107 - symbol:ATSMC2 "AT3G47460" species:37... 99 0.00074 1
TIGR_CMR|CHY_1443 - symbol:CHY_1443 "chromosome segregati... 99 0.00075 1
UNIPROTKB|Q71YL3 - symbol:smC "Chromosome partition prote... 99 0.00075 1
POMBASE|SPBP4H10.06c - symbol:cut14 "condensin complex su... 98 0.00095 1
>FB|FBgn0040283 [details] [associations]
symbol:SMC1 "SMC1" species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0008278 "cohesin
complex" evidence=ISS;IDA;NAS] [GO:0007062 "sister chromatid
cohesion" evidence=ISS;NAS] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010629 "negative regulation of gene expression"
evidence=IGI] [GO:0005694 "chromosome" evidence=IDA] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0016319 "mushroom body
development" evidence=IMP] [GO:0016322 "neuron remodeling"
evidence=IMP] [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0006281 GO:GO:0016322 GO:GO:0048813 GO:GO:0006310
GO:GO:0016319 GO:GO:0010629 GO:GO:0030261 GO:GO:0005700
GO:GO:0035327 GO:GO:0008278 GO:GO:0007062 SUPFAM:SSF75553
HSSP:Q9X0R4 EMBL:AF225909 EMBL:AJ271845 STRING:Q9N6I4
FlyBase:FBgn0040283 InParanoid:Q9N6I4 OrthoDB:EOG4QNKB0
Uniprot:Q9N6I4
Length = 1238
Score = 155 (59.6 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 2 YRYKPSPFLLLDEIDAALDNINIWKTIQYIRT-VPKMNVIAVSLKPQFYFHSDILFGIT 59
+ + P+PF +LDEIDAALDN NI K YIR + I +SLK +FY H+D L GIT
Sbjct: 1158 HSFHPAPFFVLDEIDAALDNTNIGKVASYIRDHTTNLQTIVISLKEEFYGHADALVGIT 1216
>ZFIN|ZDB-GENE-090506-9 [details] [associations]
symbol:smc1a "structural maintenance of chromosomes
1A" species:7955 "Danio rerio" [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
ZFIN:ZDB-GENE-090506-9 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 CTD:8243 KO:K06636 GeneTree:ENSGT00580000081569
EMBL:CR354431 IPI:IPI00506664 RefSeq:NP_001155103.1
UniGene:Dr.120420 Ensembl:ENSDART00000078148 GeneID:559665
KEGG:dre:559665 OMA:ERIRHAN NextBio:20883076 Uniprot:E7F0X6
Length = 1232
Score = 151 (58.2 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ +V I +SLK +FY +D L G+
Sbjct: 1144 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVQNFQAIVISLKEEFYTKADSLIGV 1203
>ZFIN|ZDB-GENE-040426-57 [details] [associations]
symbol:smc1al "structural maintenance of chromosomes
1A, like" species:7955 "Danio rerio" [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
ZFIN:ZDB-GENE-040426-57 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000195481
HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
GeneTree:ENSGT00580000081569 EMBL:CR376802 EMBL:CT025883
EMBL:AY648730 IPI:IPI00501499 RefSeq:NP_997975.2 UniGene:Dr.76942
STRING:Q6DRM9 Ensembl:ENSDART00000081016 GeneID:403060
KEGG:dre:403060 CTD:403060 InParanoid:Q6DRM9 OMA:NIGEVAN
NextBio:20816857 Uniprot:Q6DRM9
Length = 1233
Score = 151 (58.2 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ +V I +SLK +FY +D L G+
Sbjct: 1145 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVQNFQAIVISLKEEFYTKADSLIGV 1204
>UNIPROTKB|O93308 [details] [associations]
symbol:smc1a "Structural maintenance of chromosomes protein
1A" species:8355 "Xenopus laevis" [GO:0000075 "cell cycle
checkpoint" evidence=ISS] [GO:0000776 "kinetochore" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0007126 "meiosis" evidence=ISS] [GO:0009314
"response to radiation" evidence=ISS] [GO:0030893 "meiotic cohesin
complex" evidence=ISS] [GO:0042770 "signal transduction in response
to DNA damage" evidence=ISS] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0000075 GO:GO:0007062 SUPFAM:SSF75553
GO:GO:0030893 HOVERGEN:HBG039593 EMBL:AF051784
RefSeq:NP_001165905.1 UniGene:Xl.4734 ProteinModelPortal:O93308
IntAct:O93308 GeneID:100379087 KEGG:xla:100379087 CTD:100379087
Uniprot:O93308
Length = 1232
Score = 147 (56.8 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ YKPSPF +LDEIDAALDN NI K YI+ ++ I +SLK +FY ++ L G+
Sbjct: 1144 IHSYKPSPFFVLDEIDAALDNTNIGKVANYIKEQSMSNFQAIVISLKEEFYTKAESLIGV 1203
>UNIPROTKB|Q8NDV3 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes protein
1B" species:9606 "Homo sapiens" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0030893 "meiotic cohesin complex" evidence=IDA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 Reactome:REACT_115566 GO:GO:0000775
GO:GO:0003677 GO:GO:0006281 Reactome:REACT_111183 GO:GO:0006310
GO:GO:0030261 GO:GO:0000800 GO:GO:0007062 eggNOG:COG1196
SUPFAM:SSF75553 EMBL:AL008718 EMBL:AL021391 GO:GO:0030893
HOVERGEN:HBG039593 KO:K06636 EMBL:AJ504806 EMBL:BC126208
EMBL:AK125736 IPI:IPI00479260 IPI:IPI00807400 IPI:IPI00893258
RefSeq:NP_683515.3 UniGene:Hs.334176 ProteinModelPortal:Q8NDV3
SMR:Q8NDV3 STRING:Q8NDV3 PhosphoSite:Q8NDV3 DMDM:57015410
PaxDb:Q8NDV3 PRIDE:Q8NDV3 Ensembl:ENST00000357450
Ensembl:ENST00000404354 GeneID:27127 KEGG:hsa:27127 UCSC:uc003bgc.3
UCSC:uc003bgd.3 CTD:27127 GeneCards:GC22M045739 H-InvDB:HIX0027884
HGNC:HGNC:11112 HPA:HPA001500 MIM:608685 neXtProt:NX_Q8NDV3
PharmGKB:PA35962 OMA:QLYHNEK GenomeRNAi:27127 NextBio:49836
Bgee:Q8NDV3 CleanEx:HS_SMC1B Genevestigator:Q8NDV3
GermOnline:ENSG00000077935 Uniprot:Q8NDV3
Length = 1235
Score = 145 (56.1 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDE+DAALDN NI K YI+ T + +I +SLK +FY +D L GI
Sbjct: 1140 VHSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQTQDQFQMIVISLKEEFYSRADALIGI 1199
>UNIPROTKB|G3X7C0 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes
protein" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042770 "signal transduction in response to DNA
damage" evidence=IEA] [GO:0036033 "mediator complex binding"
evidence=IEA] [GO:0032876 "negative regulation of DNA
endoreduplication" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0009314 "response to radiation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0000776 GO:GO:0006281 GO:GO:0003682 GO:GO:0042770
GO:GO:0006310 GO:GO:0030261 GO:GO:0009314 GO:GO:0032876
GO:GO:0000075 GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
OMA:NALVCET GeneTree:ENSGT00580000081569 EMBL:DAAA02073280
EMBL:DAAA02073281 Ensembl:ENSBTAT00000023619 Uniprot:G3X7C0
Length = 1232
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1143 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1202
>UNIPROTKB|O97593 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes protein
1A" species:9913 "Bos taurus" [GO:0030893 "meiotic cohesin complex"
evidence=ISS] [GO:0007126 "meiosis" evidence=ISS] [GO:0009314
"response to radiation" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000776 "kinetochore" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=ISS] [GO:0042770 "signal transduction in
response to DNA damage" evidence=ISS] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0036033 "mediator
complex binding" evidence=IEA] [GO:0032876 "negative regulation of
DNA endoreduplication" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0007126 GO:GO:0005737 GO:GO:0000776 GO:GO:0051301
GO:GO:0007067 GO:GO:0006281 GO:GO:0003682 GO:GO:0042770
GO:GO:0006310 GO:GO:0030261 GO:GO:0009314 GO:GO:0032876
GO:GO:0000075 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
GO:GO:0030893 EMBL:AF072712 IPI:IPI00687474 PIR:S71602
RefSeq:NP_777039.1 UniGene:Bt.109789 ProteinModelPortal:O97593
STRING:O97593 PRIDE:O97593 GeneID:282370 KEGG:bta:282370 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 InParanoid:O97593 KO:K06636
OrthoDB:EOG4HX507 NextBio:20806162 Uniprot:O97593
Length = 1233
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1144 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203
>UNIPROTKB|E2QV07 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 CTD:8243 KO:K06636 OMA:NALVCET
GeneTree:ENSGT00580000081569 EMBL:AAEX03026385 RefSeq:XP_538049.3
Ensembl:ENSCAFT00000025795 GeneID:480928 KEGG:cfa:480928
Uniprot:E2QV07
Length = 1233
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1144 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203
>UNIPROTKB|Q14683 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes protein
1A" species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0036033 "mediator complex binding" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IPI] [GO:0042770
"signal transduction in response to DNA damage" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0000075 "cell cycle
checkpoint" evidence=IDA] [GO:0009314 "response to radiation"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008280 "cohesin core heterodimer" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=TAS] [GO:0003777 "microtubule motor activity"
evidence=NAS] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=TAS] [GO:0000776 "kinetochore" evidence=IDA] [GO:0007126
"meiosis" evidence=ISS] [GO:0000070 "mitotic sister chromatid
segregation" evidence=TAS] [GO:0030893 "meiotic cohesin complex"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=TAS] [GO:0000087 "M phase of mitotic cell cycle"
evidence=TAS] [GO:0000236 "mitotic prometaphase" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007091 "metaphase/anaphase transition of mitotic
cell cycle" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=IMP] [GO:0007062
"sister chromatid cohesion" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0007126 GO:GO:0005737
Reactome:REACT_115566 GO:GO:0005654 Reactome:REACT_21300
GO:GO:0000776 GO:GO:0051301 GO:GO:0007052 GO:GO:0006281
Reactome:REACT_1675 GO:GO:0003682 GO:GO:0042770
Reactome:REACT_111183 GO:GO:0006310 GO:GO:0000794 GO:GO:0030261
GO:GO:0009314 GO:GO:0003777 GO:GO:0032876 GO:GO:0007091
GO:GO:0000398 GO:GO:0000075 GO:GO:0000236 GO:GO:0000777
GO:GO:0007064 eggNOG:COG1196 SUPFAM:SSF75553 EMBL:Z97054
Orphanet:199 EMBL:AL161779 GO:GO:0030893 GO:GO:0008280 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:S78271 EMBL:D80000 EMBL:BC112127 IPI:IPI00291939 PIR:I54383
RefSeq:NP_006297.2 UniGene:Hs.211602 ProteinModelPortal:Q14683
SMR:Q14683 DIP:DIP-30911N IntAct:Q14683 MINT:MINT-233274
STRING:Q14683 PhosphoSite:Q14683 DMDM:29336622 PaxDb:Q14683
PeptideAtlas:Q14683 PRIDE:Q14683 Ensembl:ENST00000322213
GeneID:8243 KEGG:hsa:8243 UCSC:uc004dsg.3 GeneCards:GC0XM053417
HGNC:HGNC:11111 HPA:CAB025404 HPA:HPA005499 MIM:300040 MIM:300590
neXtProt:NX_Q14683 PharmGKB:PA35961 InParanoid:Q14683 OMA:NALVCET
PhylomeDB:Q14683 ChiTaRS:SMC1A GenomeRNAi:8243 NextBio:31006
ArrayExpress:Q14683 Bgee:Q14683 CleanEx:HS_SMC1A
Genevestigator:Q14683 GermOnline:ENSG00000072501 Uniprot:Q14683
Length = 1233
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1144 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203
>UNIPROTKB|F1SM58 [details] [associations]
symbol:F1SM58 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030893 "meiotic cohesin complex" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR024704 PIRSF:PIRSF005719 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005634 GO:GO:0006281 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 GeneTree:ENSGT00580000081569
EMBL:CU856016 EMBL:CU633534 Ensembl:ENSSSCT00000000014
Uniprot:F1SM58
Length = 1233
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDE+DAALDN NI K YI+ T + +I +SLK +FY +D L GI
Sbjct: 1138 VHSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQTQEQFQMIIISLKEEFYSKADALIGI 1197
>UNIPROTKB|F2Z5A8 [details] [associations]
symbol:LOC100523938 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 KO:K06636 GeneTree:ENSGT00580000081569
EMBL:CU695116 EMBL:CU914655 EMBL:GACC01000120 RefSeq:XP_003135172.3
Ensembl:ENSSSCT00000013478 GeneID:100523938 KEGG:ssc:100523938
Uniprot:F2Z5A8
Length = 1233
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1144 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203
>MGI|MGI:1344345 [details] [associations]
symbol:Smc1a "structural maintenance of chromosomes 1A"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=ISO]
[GO:0007067 "mitosis" evidence=IEA] [GO:0007126 "meiosis"
evidence=ISO;IPI] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0030893
"meiotic cohesin complex" evidence=ISO;IDA] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=ISO] [GO:0036033
"mediator complex binding" evidence=IDA] [GO:0042770 "signal
transduction in response to DNA damage" evidence=ISO] [GO:0046982
"protein heterodimerization activity" evidence=ISO] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
MGI:MGI:1344345 GO:GO:0005524 GO:GO:0007126 GO:GO:0005737
GO:GO:0005654 GO:GO:0000776 GO:GO:0051301 GO:GO:0007067
GO:GO:0006281 GO:GO:0003682 GO:GO:0042770 Reactome:REACT_118161
Reactome:REACT_120463 Reactome:REACT_75800 GO:GO:0006310
GO:GO:0030261 GO:GO:0009314 GO:GO:0032876 GO:GO:0019827
GO:GO:0000075 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
EMBL:AL672180 GO:GO:0036033 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AF047600 EMBL:BC131667 EMBL:AK007334 EMBL:AK013648
EMBL:AK017948 EMBL:AK088183 IPI:IPI00123870 RefSeq:NP_062684.2
UniGene:Mm.482095 PDB:2WD5 PDBsum:2WD5 ProteinModelPortal:Q9CU62
SMR:Q9CU62 DIP:DIP-57021N IntAct:Q9CU62 STRING:Q9CU62
PhosphoSite:Q9CU62 PaxDb:Q9CU62 PRIDE:Q9CU62
Ensembl:ENSMUST00000045312 GeneID:24061 KEGG:mmu:24061
GeneTree:ENSGT00580000081569 InParanoid:A2AFQ5
EvolutionaryTrace:Q9CU62 NextBio:304025 Bgee:Q9CU62
CleanEx:MM_SMC1A Genevestigator:Q9CU62
GermOnline:ENSMUSG00000041133 Uniprot:Q9CU62
Length = 1233
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1144 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203
>RGD|61991 [details] [associations]
symbol:Smc1a "structural maintenance of chromosomes 1A"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=ISO;ISS] [GO:0000776 "kinetochore"
evidence=ISO;ISS] [GO:0003682 "chromatin binding" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA;ISO]
[GO:0007067 "mitosis" evidence=IEA] [GO:0007126 "meiosis"
evidence=ISO;IDA] [GO:0009314 "response to radiation"
evidence=ISO;ISS] [GO:0019827 "stem cell maintenance" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0030893
"meiotic cohesin complex" evidence=ISO;ISS] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=ISO] [GO:0036033
"mediator complex binding" evidence=ISO] [GO:0042770 "signal
transduction in response to DNA damage" evidence=ISO;ISS]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051301 "cell division" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
RGD:61991 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126 GO:GO:0005737
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0032876 GO:GO:0000075 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AJ005113 IPI:IPI00209018 RefSeq:NP_113871.1 UniGene:Rn.11763
ProteinModelPortal:Q9Z1M9 STRING:Q9Z1M9 PhosphoSite:Q9Z1M9
PRIDE:Q9Z1M9 GeneID:63996 KEGG:rno:63996 NextBio:612558
ArrayExpress:Q9Z1M9 Genevestigator:Q9Z1M9 Uniprot:Q9Z1M9
Length = 1233
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1144 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203
>UNIPROTKB|Q9Z1M9 [details] [associations]
symbol:Smc1a "Structural maintenance of chromosomes protein
1A" species:10116 "Rattus norvegicus" [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
RGD:61991 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126 GO:GO:0005737
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0032876 GO:GO:0000075 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AJ005113 IPI:IPI00209018 RefSeq:NP_113871.1 UniGene:Rn.11763
ProteinModelPortal:Q9Z1M9 STRING:Q9Z1M9 PhosphoSite:Q9Z1M9
PRIDE:Q9Z1M9 GeneID:63996 KEGG:rno:63996 NextBio:612558
ArrayExpress:Q9Z1M9 Genevestigator:Q9Z1M9 Uniprot:Q9Z1M9
Length = 1233
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1144 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1203
>UNIPROTKB|F1N6C8 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9913 "Bos taurus" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
GeneTree:ENSGT00580000081569 OMA:QLYHNEK EMBL:DAAA02014929
EMBL:DAAA02014930 IPI:IPI00697785 ProteinModelPortal:F1N6C8
PRIDE:F1N6C8 Ensembl:ENSBTAT00000014005 Uniprot:F1N6C8
Length = 1235
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDE+DAALDN NI K YI+ T + +I +SLK +FY +D L GI
Sbjct: 1146 VHSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQTQEQFQMIIISLKEEFYSKADALIGI 1205
>UNIPROTKB|I3LMC6 [details] [associations]
symbol:LOC100523938 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 OMA:NALVCET GeneTree:ENSGT00580000081569
EMBL:CU695116 EMBL:CU914655 Ensembl:ENSSSCT00000028659
Uniprot:I3LMC6
Length = 1235
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++ YKP+PF +LDEIDAALDN NI K YI+ N I +SLK +FY ++ L G+
Sbjct: 1146 IHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGV 1205
>UNIPROTKB|F6V533 [details] [associations]
symbol:SMC1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 GeneTree:ENSGT00580000081569 EMBL:AAEX03007228
EMBL:AAEX03007229 EMBL:AAEX03007230 Ensembl:ENSCAFT00000001296
Uniprot:F6V533
Length = 1079
Score = 142 (55.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDE+DAALDN NI K YI+ T + +I +SLK +FY +D L G+
Sbjct: 979 VHSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQTQEQFQMIIISLKEEFYSKADALIGV 1038
>DICTYBASE|DDB_G0291752 [details] [associations]
symbol:smc1 "structural maintenance of chromosome
protein" species:44689 "Dictyostelium discoideum" [GO:0051276
"chromosome organization" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=ISS] [GO:0042770
"signal transduction in response to DNA damage" evidence=ISS]
[GO:0008280 "cohesin core heterodimer" evidence=ISS] [GO:0007064
"mitotic sister chromatid cohesion" evidence=ISS] [GO:0007052
"mitotic spindle organization" evidence=ISS] [GO:0003777
"microtubule motor activity" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0000075 "cell cycle checkpoint"
evidence=ISS] [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 dictyBase:DDB_G0291752 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0007052
GO:GO:0006281 GO:GO:0003682 EMBL:AAFI02000182 GO:GO:0042770
GO:GO:0006310 GO:GO:0046982 GO:GO:0030261 GO:GO:0003777
GO:GO:0000075 GO:GO:0007064 eggNOG:COG1196 SUPFAM:SSF75553
GO:GO:0008280 KO:K06636 OMA:NALVCET RefSeq:XP_629977.1
ProteinModelPortal:Q54E85 STRING:Q54E85 EnsemblProtists:DDB0219931
GeneID:8628307 KEGG:ddi:DDB_G0291752 InParanoid:Q54E85
Uniprot:Q54E85
Length = 1373
Score = 143 (55.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 5 KPSPFLLLDEIDAALDNINIWKTIQYIR-TVPK-MNVIAVSLKPQFYFHSDILFGI 58
K +PF++LDEIDAA D++N+ K ++Y+R K + + +SLK QF+ HSD+L G+
Sbjct: 1264 KSTPFMILDEIDAAFDSVNVLKLVRYVRHKASKDLQFLVISLKEQFFVHSDLLVGV 1319
>UNIPROTKB|E2QRT5 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 KO:K06636
GeneTree:ENSGT00580000081569 CTD:27127 OMA:QLYHNEK
EMBL:AAEX03007228 EMBL:AAEX03007229 EMBL:AAEX03007230
RefSeq:XP_538328.2 Ensembl:ENSCAFT00000001296
Ensembl:ENSCAFT00000049571 GeneID:481207 KEGG:cfa:481207
NextBio:20856062 Uniprot:E2QRT5
Length = 1235
Score = 142 (55.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDE+DAALDN NI K YI+ T + +I +SLK +FY +D L G+
Sbjct: 1140 VHSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQTQEQFQMIIISLKEEFYSKADALIGV 1199
>MGI|MGI:2154049 [details] [associations]
symbol:Smc1b "structural maintenance of chromosomes 1B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IDA] [GO:0000795 "synaptonemal complex" evidence=IDA]
[GO:0000800 "lateral element" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IDA] [GO:0007126 "meiosis"
evidence=IPI] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=ISO;IDA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 MGI:MGI:2154049 GO:GO:0005524
GO:GO:0007126 GO:GO:0005654 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0034991
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636
GeneTree:ENSGT00580000081569 CTD:27127 OMA:QLYHNEK EMBL:AF303827
IPI:IPI00120490 RefSeq:NP_536718.1 UniGene:Mm.182737
ProteinModelPortal:Q920F6 SMR:Q920F6 STRING:Q920F6
PhosphoSite:Q920F6 PaxDb:Q920F6 PRIDE:Q920F6
Ensembl:ENSMUST00000023068 GeneID:140557 KEGG:mmu:140557
InParanoid:Q920F6 OrthoDB:EOG4RNB7M NextBio:369861 Bgee:Q920F6
CleanEx:MM_SMC1B Genevestigator:Q920F6
GermOnline:ENSMUSG00000022432 Uniprot:Q920F6
Length = 1248
Score = 138 (53.6 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDE+DAALDN NI K YI+ + + +I +SLK +FY +D L G+
Sbjct: 1139 VHSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQSQEQFQMIIISLKEEFYSKADALIGV 1198
>RGD|1308791 [details] [associations]
symbol:Smc1b "structural maintenance of chromosomes 1B"
species:10116 "Rattus norvegicus" [GO:0000775 "chromosome,
centromeric region" evidence=IEA;ISO] [GO:0000795 "synaptonemal
complex" evidence=ISO] [GO:0000800 "lateral element"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA;ISO]
[GO:0007126 "meiosis" evidence=IEA;ISO] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0030893 "meiotic cohesin complex"
evidence=ISO] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA;ISO] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 RGD:1308791 GO:GO:0005524 GO:GO:0007126 GO:GO:0000775
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0000800 EMBL:CH473950 GO:GO:0007062 SUPFAM:SSF75553
GO:GO:0030893 KO:K06636 GeneTree:ENSGT00580000081569 CTD:27127
OMA:QLYHNEK OrthoDB:EOG4RNB7M IPI:IPI00372956 RefSeq:NP_001123970.1
UniGene:Rn.56972 Ensembl:ENSRNOT00000044883 GeneID:300121
KEGG:rno:300121 NextBio:646377 Uniprot:D3ZE73
Length = 1247
Score = 137 (53.3 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIR--TVPKMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDE+DAALDN NI K YI+ + + +I +SLK +FY +D L G+
Sbjct: 1139 VHSFRPAPFFVLDEVDAALDNTNIGKVSGYIKEQSQEQFQMIIISLKEEFYSRADALIGV 1198
>WB|WBGene00001860 [details] [associations]
symbol:him-1 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0010165 "response to X-ray" evidence=IMP]
[GO:0009411 "response to UV" evidence=IMP] [GO:0008278 "cohesin
complex" evidence=ISS;IPI] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0009411 GO:GO:0002119 GO:GO:0003677
GO:GO:0006281 GO:GO:0040011 GO:GO:0000790 GO:GO:0006310
GO:GO:0040035 GO:GO:0030261 GO:GO:0010165 GO:GO:0007064
GO:GO:0008278 eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000195481
KO:K06636 OMA:NALVCET GeneTree:ENSGT00580000081569 EMBL:FO081198
RefSeq:NP_001040658.2 UniGene:Cel.5375 ProteinModelPortal:O01789
SMR:O01789 STRING:O01789 PaxDb:O01789 EnsemblMetazoa:F28B3.7a.1
EnsemblMetazoa:F28B3.7a.2 GeneID:172116 KEGG:cel:CELE_F28B3.7
UCSC:F28B3.7a.1 CTD:172116 WormBase:F28B3.7a InParanoid:O01789
NextBio:874073 ArrayExpress:O01789 Uniprot:O01789
Length = 1262
Score = 134 (52.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 29/55 (52%), Positives = 36/55 (65%)
Query: 6 PSPFLLLDEIDAALDNINIWKTIQYIRTVPK--MNVIAVSLKPQFYFHSDILFGI 58
P+PF +LDEIDAALDN NI K YI + M +I +SLK +FY +D L GI
Sbjct: 1169 PAPFFVLDEIDAALDNTNIGKVASYICESAREHMQIIVISLKEEFYNKADSLIGI 1223
>UNIPROTKB|F1NX72 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 GeneTree:ENSGT00580000081569 EMBL:AADN02006734
IPI:IPI00577909 Ensembl:ENSGALT00000023006 Uniprot:F1NX72
Length = 1234
Score = 132 (51.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVP--KMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDEIDAALDN NI K +IR + ++ +SLK +FY +D L G+
Sbjct: 1139 VHSFRPAPFFILDEIDAALDNTNIDKVSIFIREQAHKQFQMVVISLKEEFYSKADALIGV 1198
>UNIPROTKB|F1NX73 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
GeneTree:ENSGT00580000081569 OMA:QLYHNEK EMBL:AADN02006734
IPI:IPI00572844 Ensembl:ENSGALT00000023005 Uniprot:F1NX73
Length = 1238
Score = 132 (51.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVP--KMNVIAVSLKPQFYFHSDILFGI 58
++ ++P+PF +LDEIDAALDN NI K +IR + ++ +SLK +FY +D L G+
Sbjct: 1143 VHSFRPAPFFILDEIDAALDNTNIDKVSIFIREQAHKQFQMVVISLKEEFYSKADALIGV 1202
>ASPGD|ASPL0000036762 [details] [associations]
symbol:AN2963 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008278 "cohesin
complex" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
HOGENOM:HOG000195481 KO:K06636 OMA:NALVCET OrthoDB:EOG42VCQD
RefSeq:XP_660567.1 ProteinModelPortal:Q5B917 SMR:Q5B917
STRING:Q5B917 EnsemblFungi:CADANIAT00010118 GeneID:2874104
KEGG:ani:AN2963.2 Uniprot:Q5B917
Length = 1261
Score = 132 (51.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYI--RTVPKMNVIAVSLKPQFYFHSDILFGI 58
++ Y+PSPF +LDE+DAALDN N+ + YI P M I +SLK + +S+ L GI
Sbjct: 1182 IHSYQPSPFFVLDEVDAALDNTNVARIANYIYDHAAPGMQFIVISLKNGLFQNSEALVGI 1241
>CGD|CAL0001080 [details] [associations]
symbol:SMC1 species:5476 "Candida albicans" [GO:0034990
"nuclear mitotic cohesin complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0003680 "AT DNA
binding" evidence=IEA] [GO:0000217 "DNA secondary structure
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 CGD:CAL0001080
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
EMBL:AACQ01000091 EMBL:AACQ01000090 eggNOG:COG1196 SUPFAM:SSF75553
KO:K06636 RefSeq:XP_715092.1 RefSeq:XP_715143.1
ProteinModelPortal:Q5A021 SMR:Q5A021 STRING:Q5A021 GeneID:3643221
GeneID:3643229 KEGG:cal:CaO19.11845 KEGG:cal:CaO19.4367
Uniprot:Q5A021
Length = 1240
Score = 131 (51.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGI 58
++ Y+PSPF +LDEIDAALDN N+ + YI+ P I +SLK + SD L GI
Sbjct: 1148 IHSYQPSPFFVLDEIDAALDNANVARIGNYIKKYAGPNFQFIVISLKNSLFEKSDALVGI 1207
>POMBASE|SPBC29A10.04 [details] [associations]
symbol:psm1 "mitotic cohesin complex subunit Psm1"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0005694 "chromosome"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0007064 "mitotic sister
chromatid cohesion" evidence=IMP] [GO:0008278 "cohesin complex"
evidence=IDA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0030892 "mitotic cohesin complex" evidence=NAS] [GO:0046982
"protein heterodimerization activity" evidence=IPI]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
PomBase:SPBC29A10.04 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR
GO:GO:0006310 GO:GO:0030261 GO:GO:0007064 eggNOG:COG1196
SUPFAM:SSF75553 GO:GO:0030892 HOGENOM:HOG000195481 PIR:T40059
RefSeq:NP_596049.2 IntAct:O94383 STRING:O94383 PRIDE:O94383
GeneID:2540557 OrthoDB:EOG42VCQD NextBio:20801683 Uniprot:O94383
Length = 1228
Score = 126 (49.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK--MNVIAVSLKPQFYFHSDILFGI 58
++ Y+PSPF +LDEIDAALD N+ K YIR + +SLK Q + S+ L GI
Sbjct: 1148 IHSYQPSPFFVLDEIDAALDQTNVTKIANYIRQHASSGFQFVVISLKNQLFSKSEALVGI 1207
>SGD|S000001886 [details] [associations]
symbol:SMC1 "Subunit of the multiprotein cohesin complex"
species:4932 "Saccharomyces cerevisiae" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0034990 "nuclear mitotic cohesin complex"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0000217 "DNA secondary structure binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0003680 "AT DNA
binding" evidence=IDA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0030261 "chromosome condensation"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 SGD:S000001886
Pfam:PF02463 GO:GO:0005524 GO:GO:0051301 EMBL:D50617 EMBL:BK006940
GO:GO:0016887 GO:GO:0006310 GO:GO:0003690 GO:GO:0006302
GO:GO:0030261 GO:GO:0003680 GO:GO:0007064 eggNOG:COG1196
SUPFAM:SSF75553 PDB:1W1W PDBsum:1W1W GO:GO:0034990
HOGENOM:HOG000195481 KO:K06636 OMA:NALVCET
GeneTree:ENSGT00580000081569 OrthoDB:EOG42VCQD EMBL:L00602
PIR:A49464 RefSeq:NP_116647.1 ProteinModelPortal:P32908 SMR:P32908
DIP:DIP-2982N IntAct:P32908 MINT:MINT-434606 STRING:P32908
PaxDb:P32908 PeptideAtlas:P32908 EnsemblFungi:YFL008W GeneID:850540
KEGG:sce:YFL008W CYGD:YFL008w EvolutionaryTrace:P32908
NextBio:966301 Genevestigator:P32908 GermOnline:YFL008W
GO:GO:0000217 Uniprot:P32908
Length = 1225
Score = 122 (48.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRTV--PKMNVIAVSLKPQFYFHSDILFGI 58
Y+PSPF +LDE+DAALD N+ + YIR P + I +SLK + SD L G+
Sbjct: 1148 YQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 1204
>POMBASE|SPBC146.03c [details] [associations]
symbol:cut3 "condensin complex subunit Cut3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000796 "condensin
complex" evidence=IDA] [GO:0000939 "condensed chromosome inner
kinetochore" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0034613
"cellular protein localization" evidence=IMP] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 PomBase:SPBC146.03c Pfam:PF02463 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0034613 GO:GO:0051301
EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0006310
GO:GO:0007076 GO:GO:0000939 GO:GO:0000796 GO:GO:0007062 KO:K06675
SUPFAM:SSF75553 OMA:IAIEFLT HOGENOM:HOG000184777 EMBL:D30788
EMBL:AB027959 PIR:S51622 RefSeq:NP_595392.1
ProteinModelPortal:P41004 DIP:DIP-35048N IntAct:P41004
STRING:P41004 EnsemblFungi:SPBC146.03c.1 GeneID:2539817
KEGG:spo:SPBC146.03c OrthoDB:EOG4WM82V NextBio:20800966
Uniprot:P41004
Length = 1324
Score = 108 (43.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK-MNVIAVSLKPQFYFHSDILFGI- 58
++ YKP+P ++DEIDAALD N+ YI+ K I +SL+ + S L GI
Sbjct: 1246 LHNYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIVISLRSNMFELSSRLVGIY 1305
Query: 59 -TLKMLGSLTIKGR 71
T M S+TI +
Sbjct: 1306 KTANMTKSVTINNK 1319
>UNIPROTKB|P51834 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR024704 HAMAP:MF_01894
InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
EMBL:D64116 EMBL:D49781 PIR:G69708 RefSeq:NP_389476.2
ProteinModelPortal:P51834 SMR:P51834 IntAct:P51834
EnsemblBacteria:EBBACT00000001044 GeneID:938085 KEGG:bsu:BSU15940
PATRIC:18974993 GenoList:BSU15940 HOGENOM:HOG000036392 KO:K03529
ProtClustDB:CLSK2765274 BioCyc:BSUB:BSU15940-MONOMER
TIGRFAMs:TIGR02168 Uniprot:P51834
Length = 1186
Score = 103 (41.3 bits), Expect = 0.00028, P = 0.00028
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK-MNVIAVSLKPQFYFHSDILFGITLK 61
+ +P PF +LDE++AALD N+++ QY++ I ++ + +D+L+G+T++
Sbjct: 1107 KVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVITHRKGTMEEADVLYGVTMQ 1166
Query: 62 MLG 64
G
Sbjct: 1167 ESG 1169
>TIGR_CMR|BA_3986 [details] [associations]
symbol:BA_3986 "chromosome segregation SMC protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006310 GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553
OMA:CQNGKIP HOGENOM:HOG000036392 KO:K03529 TIGRFAMs:TIGR02168
HSSP:Q9X0R4 RefSeq:NP_846228.1 RefSeq:YP_020625.1
RefSeq:YP_029950.1 ProteinModelPortal:Q81WI9 IntAct:Q81WI9
DNASU:1086762 EnsemblBacteria:EBBACT00000012710
EnsemblBacteria:EBBACT00000015269 EnsemblBacteria:EBBACT00000024406
GeneID:1086762 GeneID:2817444 GeneID:2848221 KEGG:ban:BA_3986
KEGG:bar:GBAA_3986 KEGG:bat:BAS3699 ProtClustDB:CLSK873325
BioCyc:BANT260799:GJAJ-3757-MONOMER
BioCyc:BANT261594:GJ7F-3874-MONOMER Uniprot:Q81WI9
Length = 1189
Score = 103 (41.3 bits), Expect = 0.00028, P = 0.00028
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTVP-KMNVIAVSLKPQFYFHSDILFGITLK 61
+ +P PF +LDE++AALD N+ + QY++ + I ++ + SD+L+G+T++
Sbjct: 1108 KVRPVPFCVLDEVEAALDEANVARFAQYLKKFSDETQFIVITHRKGTMEESDVLYGVTMQ 1167
Query: 62 MLG 64
G
Sbjct: 1168 ESG 1170
>UNIPROTKB|Q81ZL2 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR024704 HAMAP:MF_01894
InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
KO:K03529 TIGRFAMs:TIGR02168 EMBL:AJ543641 RefSeq:NP_819572.1
HSSP:Q9X0R4 ProteinModelPortal:Q81ZL2 PRIDE:Q81ZL2 GeneID:1208425
KEGG:cbu:CBU_0540 PATRIC:17929777 HOGENOM:HOG000036391 OMA:WARISKL
ProtClustDB:CLSK914134 BioCyc:CBUR227377:GJ7S-543-MONOMER
Uniprot:Q81ZL2
Length = 1169
Score = 102 (41.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK-MNVIAVSLKPQFYFHSDILFGIT 59
+++ P+PF +LDE+DA LD+IN+ + Q ++ + K + + +S +D L G+T
Sbjct: 1087 LFQLNPAPFCILDEVDAPLDDINVGRFCQLVKEMSKEVQFLVISHNKVTIEMADYLMGVT 1146
Query: 60 LKMLG 64
++ G
Sbjct: 1147 MQEPG 1151
>TIGR_CMR|CBU_0540 [details] [associations]
symbol:CBU_0540 "SMC family protein" species:227377
"Coxiella burnetii RSA 493" [GO:0000910 "cytokinesis" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR024704
HAMAP:MF_01894 InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
KO:K03529 TIGRFAMs:TIGR02168 EMBL:AJ543641 RefSeq:NP_819572.1
HSSP:Q9X0R4 ProteinModelPortal:Q81ZL2 PRIDE:Q81ZL2 GeneID:1208425
KEGG:cbu:CBU_0540 PATRIC:17929777 HOGENOM:HOG000036391 OMA:WARISKL
ProtClustDB:CLSK914134 BioCyc:CBUR227377:GJ7S-543-MONOMER
Uniprot:Q81ZL2
Length = 1169
Score = 102 (41.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK-MNVIAVSLKPQFYFHSDILFGIT 59
+++ P+PF +LDE+DA LD+IN+ + Q ++ + K + + +S +D L G+T
Sbjct: 1087 LFQLNPAPFCILDEVDAPLDDINVGRFCQLVKEMSKEVQFLVISHNKVTIEMADYLMGVT 1146
Query: 60 LKMLG 64
++ G
Sbjct: 1147 MQEPG 1151
>UNIPROTKB|Q10970 [details] [associations]
symbol:smc "Chromosome partition protein Smc" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 EMBL:BX842581 GO:GO:0030261
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 KO:K03529
TIGRFAMs:TIGR02168 EMBL:AJ414609 PIR:B70748 RefSeq:NP_217438.2
RefSeq:NP_337503.1 RefSeq:YP_006516375.1 ProteinModelPortal:Q10970
SMR:Q10970 PhosSite:P12071629 PRIDE:Q10970
EnsemblBacteria:EBMYCT00000000305 EnsemblBacteria:EBMYCT00000069167
GeneID:13317715 GeneID:887179 GeneID:925284 KEGG:mtc:MT2990
KEGG:mtu:Rv2922c KEGG:mtv:RVBD_2922c PATRIC:18128344
TubercuList:Rv2922c HOGENOM:HOG000036389 OMA:GDITKFI
ProtClustDB:CLSK881165 Uniprot:Q10970
Length = 1205
Score = 102 (41.0 bits), Expect = 0.00037, P = 0.00037
Identities = 19/63 (30%), Positives = 40/63 (63%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
++R +PSPF ++DE++AALD++N+ + + + + + +I KP +D L+G+
Sbjct: 1119 IFRARPSPFYIMDEVEAALDDVNLRRLLSLFEQLREQSQIIIITHQKPTMEV-ADALYGV 1177
Query: 59 TLK 61
T++
Sbjct: 1178 TMQ 1180
>TAIR|locus:2079107 [details] [associations]
symbol:ATSMC2 "AT3G47460" species:3702 "Arabidopsis
thaliana" [GO:0005215 "transporter activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005694 "chromosome" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR024704 InterPro:IPR010935 InterPro:IPR027120
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005694 GO:GO:0051301
GO:GO:0007067 GO:GO:0006281 GO:GO:0005215 GO:GO:0006310
GO:GO:0030261 EMBL:AL096860 EMBL:AL132955 UniGene:At.35803
UniGene:At.71101 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
KO:K06674 PANTHER:PTHR18937:SF9 HSSP:P32908 HOGENOM:HOG000163792
ProtClustDB:CLSN2685173 IPI:IPI00530229 PIR:T45706
RefSeq:NP_190330.1 ProteinModelPortal:Q9SN90 SMR:Q9SN90
STRING:Q9SN90 PaxDb:Q9SN90 PRIDE:Q9SN90 EnsemblPlants:AT3G47460.1
GeneID:823900 KEGG:ath:AT3G47460 TAIR:At3g47460 InParanoid:Q9SN90
OMA:WIASERQ PhylomeDB:Q9SN90 Genevestigator:Q9SN90 Uniprot:Q9SN90
Length = 1171
Score = 99 (39.9 bits), Expect = 0.00074, P = 0.00074
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 4 YKPSPFLLLDEIDAALDNINIWKTIQYIRT-VPKMNVIAVSLKPQFYFHSDILFGITLKM 62
+KP+P +LDE+DAALD + + I++ P I VSLK + ++D+LF T +
Sbjct: 1099 FKPAPIYILDEVDAALDLSHTQNIGRMIKSHFPHSQFIVVSLKEGMFSNADVLFR-TKFV 1157
Query: 63 LGSLTIKGRVHKAS 76
G T++ V K S
Sbjct: 1158 DGVSTVQRTVTKQS 1171
>TIGR_CMR|CHY_1443 [details] [associations]
symbol:CHY_1443 "chromosome segregation protein SMC"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0030261 "chromosome condensation"
evidence=ISS] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000036392
KO:K03529 TIGRFAMs:TIGR02168 OMA:GDITKFI RefSeq:YP_360275.1
ProteinModelPortal:Q3AC59 STRING:Q3AC59 GeneID:3728135
KEGG:chy:CHY_1443 PATRIC:21276017
BioCyc:CHYD246194:GJCN-1442-MONOMER Uniprot:Q3AC59
Length = 1185
Score = 99 (39.9 bits), Expect = 0.00075, P = 0.00075
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN-VIAVS 43
++ KPSPF +LDEIDAALD N+ + Y++ + + N VI ++
Sbjct: 1107 LFNLKPSPFCVLDEIDAALDEANVQRFAAYLKKIGERNQVILIT 1150
>UNIPROTKB|Q71YL3 [details] [associations]
symbol:smC "Chromosome partition protein Smc"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR024704
HAMAP:MF_01894 InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 EMBL:AE017262
GenomeReviews:AE017262_GR GO:GO:0030261 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000036392 KO:K03529
TIGRFAMs:TIGR02168 OMA:GDITKFI RefSeq:YP_014424.1
ProteinModelPortal:Q71YL3 STRING:Q71YL3 GeneID:2797604
KEGG:lmf:LMOf2365_1831 PATRIC:20324957 ProtClustDB:CLSK2518461
Uniprot:Q71YL3
Length = 1186
Score = 99 (39.9 bits), Expect = 0.00075, P = 0.00075
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 3 RYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK-MNVIAVSLKPQFYFHSDILFGITLK 61
R +P PF +LDE++AALD N+ + +Y++ I ++ + +D+L+G+T++
Sbjct: 1107 RVRPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIVITHRKGTMEEADVLYGVTMQ 1166
Query: 62 MLG 64
G
Sbjct: 1167 ESG 1169
>POMBASE|SPBP4H10.06c [details] [associations]
symbol:cut14 "condensin complex subunit Cut14"
species:4896 "Schizosaccharomyces pombe" [GO:0000796 "condensin
complex" evidence=IDA] [GO:0000939 "condensed chromosome inner
kinetochore" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0016887 "ATPase activity" evidence=ISM] [GO:0051304 "chromosome
separation" evidence=IMP] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 PomBase:SPBP4H10.06c Pfam:PF02463 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0051301 EMBL:CU329671
GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006310
GO:GO:0007076 GO:GO:0000939 GO:GO:0000796 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 KO:K06674 PANTHER:PTHR18937:SF9
HOGENOM:HOG000163792 EMBL:D30787 PIR:S51623 RefSeq:NP_596180.1
ProteinModelPortal:P41003 IntAct:P41003 STRING:P41003
EnsemblFungi:SPBP4H10.06c.1 GeneID:2541319 KEGG:spo:SPBP4H10.06c
OMA:GTALEIC OrthoDB:EOG4P2T9B NextBio:20802429 GO:GO:0034500
Uniprot:P41003
Length = 1172
Score = 98 (39.6 bits), Expect = 0.00095, P = 0.00095
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 1 MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK-MNVIAVSLKPQFYFHSDILFGIT 59
+ +YKP+P +LDEIDAALD + + I+T K I VSLK + +++ LF +
Sbjct: 1102 LLKYKPAPMYILDEIDAALDLSHTQNIGRLIKTKFKGSQFIIVSLKEGMFTNANRLFHVR 1161
Query: 60 LKMLGSLTIKGR 71
M GS ++ R
Sbjct: 1162 F-MDGSSVVQAR 1172
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.141 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 80 80 0.00091 102 3 11 22 0.50 28
29 0.41 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 464 (49 KB)
Total size of DFA: 90 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.38u 0.11s 9.49t Elapsed: 00:00:01
Total cpu time: 9.38u 0.11s 9.49t Elapsed: 00:00:01
Start: Thu Aug 15 15:35:00 2013 End: Thu Aug 15 15:35:01 2013