RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy832
         (80 letters)



>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 427

 Score = 58.2 bits (139), Expect = 3e-12
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 1   MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMN--VIAVSLKPQFYFHSDILFGI 58
           +  Y+PSPF +LDE+DAALD  N+ +   YIR     +   I +SLK   +  SD L G+
Sbjct: 349 INSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408

Query: 59  T 59
            
Sbjct: 409 Y 409


>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
           2336]}
          Length = 308

 Score = 39.6 bits (91), Expect = 8e-06
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 1   MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTV-PKMNVIAVSLKPQFYFHSDILFGIT 59
           +   KPSPF +LDE+D+ LD+ N  +  + ++        I ++        +D+L G+T
Sbjct: 236 LMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVT 295


>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 369

 Score = 36.0 bits (81), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 1   MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK--MNVIAVSLKPQFYFHSDILFGI 58
           +Y       L+LDE    LD     K I  +    K    VI VS   +    +D +  I
Sbjct: 297 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 356

Query: 59  TLK 61
           +L+
Sbjct: 357 SLE 359


>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 292

 Score = 27.4 bits (59), Expect = 0.14
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 1   MYRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK--MNVIAVSLKPQFYFHSDILFGI 58
           +Y       L+LDE    LD     K I  +    K    VI VS   +    +D +  I
Sbjct: 220 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 279

Query: 59  TLK 61
           +L+
Sbjct: 280 SLE 282


>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
           MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 253

 Score = 24.8 bits (54), Expect = 1.2
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 4   YKPSPFLLLDEIDAALDNINIWKTIQYIRTVPK-MNVIAVSLKPQFYFHSD 53
            + SP L+LDE  +ALD  +       +  + K    + ++ +      +D
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQAD 218


>d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 297

 Score = 24.6 bits (53), Expect = 1.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 19 LDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHSD 53
          L N   W        +P+ ++  +SL+ QFY H  
Sbjct: 33 LYNQRKWDRQLSEAQIPRNDLNHISLRKQFYTHRR 67


>d2oqma1 a.213.1.3 (A:1-171) Hypothetical protein Sden0562
           {Shewanella denitrificans [TaxId: 192073]}
          Length = 171

 Score = 23.7 bits (51), Expect = 2.5
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 46  PQFYFHSDILFGITLKMLG 64
           P  YFH    +GI L+  G
Sbjct: 137 PNLYFHITTAYGI-LRHNG 154


>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
          yoelii [TaxId: 5861]}
          Length = 357

 Score = 23.3 bits (49), Expect = 4.2
 Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 9  FLLLDEI-DAALDNINIWKTIQYIRTVPK 36
          FL  +++ +  L+ ++  +  +  R +PK
Sbjct: 4  FLKKEDVQNIDLNGMSKKERYEIWRRIPK 32


>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase
          FabZ {Malaria parasite (Plasmodium falciparum) [TaxId:
          5833]}
          Length = 146

 Score = 22.7 bits (48), Expect = 5.4
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 7/51 (13%)

Query: 2  YRYKPSPFLLLDEIDAALDNINIWKTIQYIRTVPKMNVIAVSLKPQFYFHS 52
          +RY   PFLL+D++      +   KTI  ++ V           PQ     
Sbjct: 15 HRY---PFLLVDKV----IYMQPNKTIIGLKQVSTNEPFFNGHFPQKQIMP 58


>d2in5a1 b.177.1.1 (A:3-200) Hypothetical lipoprotein YmcC
           {Escherichia coli [TaxId: 562]}
          Length = 198

 Score = 22.6 bits (48), Expect = 8.3
 Identities = 4/24 (16%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 24  IWKTIQYIRTVPKMNVIAVS-LKP 46
           + ++ Q +     +  + ++ LKP
Sbjct: 174 VRQSRQMLG--AGVIPVEMTFLKP 195


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0367    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 296,180
Number of extensions: 10991
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 14
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.9 bits)