Query psy8320
Match_columns 119
No_of_seqs 90 out of 106
Neff 3.4
Searched_HMMs 29240
Date Sat Aug 17 00:42:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3v_A FLIN4, fusion of the LI 87.9 0.091 3.1E-06 35.9 -0.2 36 75-110 34-81 (122)
2 2ecy_A TNF receptor-associated 86.7 0.32 1.1E-05 29.3 1.8 37 74-110 16-62 (66)
3 2egp_A Tripartite motif-contai 86.3 0.23 7.9E-06 30.5 1.0 36 74-109 13-64 (79)
4 2ecv_A Tripartite motif-contai 86.0 0.3 1E-05 30.0 1.5 36 74-109 20-70 (85)
5 1g25_A CDK-activating kinase a 84.9 0.18 6.1E-06 30.4 0.0 35 75-109 5-54 (65)
6 2ecw_A Tripartite motif-contai 83.5 0.34 1.2E-05 29.7 0.9 36 74-109 20-70 (85)
7 1chc_A Equine herpes virus-1 r 80.4 0.74 2.5E-05 27.5 1.6 38 74-111 6-53 (68)
8 1t1h_A Gspef-atpub14, armadill 78.5 0.32 1.1E-05 30.1 -0.5 36 74-109 9-54 (78)
9 2jne_A Hypothetical protein YF 77.8 0.45 1.5E-05 34.0 0.0 37 74-110 33-73 (101)
10 1bor_A Transcription factor PM 77.8 1.2 4.2E-05 26.3 2.0 35 75-109 8-48 (56)
11 2ysl_A Tripartite motif-contai 77.3 0.42 1.4E-05 29.0 -0.3 36 74-109 21-68 (73)
12 3ztg_A E3 ubiquitin-protein li 76.7 0.69 2.4E-05 29.4 0.6 36 74-109 14-61 (92)
13 1x3h_A Leupaxin; paxillin fami 75.8 1.6 5.3E-05 27.1 2.1 12 100-111 43-54 (80)
14 2cuq_A Four and A half LIM dom 75.5 1.6 5.4E-05 27.0 2.1 11 74-84 16-26 (80)
15 2ea5_A Cell growth regulator w 74.8 2 6.7E-05 26.9 2.4 39 73-111 15-59 (68)
16 1jm7_A BRCA1, breast cancer ty 74.3 0.76 2.6E-05 29.9 0.4 35 75-109 23-69 (112)
17 2csy_A Zinc finger protein 183 74.1 0.36 1.2E-05 30.2 -1.2 35 75-109 17-60 (81)
18 2ect_A Ring finger protein 126 72.2 1.7 5.7E-05 26.7 1.6 38 74-111 16-65 (78)
19 2xjy_A Rhombotin-2; oncoprotei 72.0 0.63 2.2E-05 31.4 -0.5 36 75-110 31-78 (131)
20 2ecg_A Baculoviral IAP repeat- 72.0 1.3 4.5E-05 27.5 1.1 38 74-111 26-69 (75)
21 2jrp_A Putative cytoplasmic pr 71.9 1.1 3.8E-05 30.5 0.8 34 75-108 4-41 (81)
22 2egq_A FHL1 protein; LIM domai 71.6 2.3 7.8E-05 26.1 2.1 23 88-110 3-27 (77)
23 2cup_A Skeletal muscle LIM-pro 71.3 1 3.4E-05 29.1 0.4 35 75-109 35-77 (101)
24 2ckl_B Ubiquitin ligase protei 71.3 0.95 3.2E-05 32.0 0.3 36 75-110 56-102 (165)
25 4ayc_A E3 ubiquitin-protein li 70.3 0.84 2.9E-05 31.6 -0.2 35 75-109 55-98 (138)
26 3l11_A E3 ubiquitin-protein li 70.1 1.3 4.6E-05 29.3 0.8 35 75-109 17-61 (115)
27 2xqn_T Testin, TESS; metal-bin 68.6 0.82 2.8E-05 30.7 -0.5 23 87-109 50-74 (126)
28 1e4u_A Transcriptional repress 68.5 1.6 5.6E-05 28.1 1.0 37 74-110 12-62 (78)
29 4ic3_A E3 ubiquitin-protein li 68.4 1.5 5.2E-05 27.4 0.8 38 74-111 25-68 (74)
30 1x6a_A LIMK-2, LIM domain kina 67.6 3.1 0.0001 25.8 2.1 37 73-110 15-53 (81)
31 2rgt_A Fusion of LIM/homeobox 67.2 1.5 5.2E-05 31.2 0.7 23 87-109 52-76 (169)
32 3fl2_A E3 ubiquitin-protein li 66.6 1.2 4.1E-05 30.0 0.0 37 74-110 53-99 (124)
33 1x63_A Skeletal muscle LIM-pro 65.7 4.1 0.00014 25.2 2.4 12 74-85 16-27 (82)
34 3gox_A Restriction endonucleas 64.2 3.5 0.00012 32.4 2.3 71 31-110 60-149 (200)
35 2ecj_A Tripartite motif-contai 64.0 1.6 5.4E-05 25.1 0.2 31 74-104 16-58 (58)
36 2ea6_A Ring finger protein 4; 63.9 0.73 2.5E-05 27.3 -1.3 36 74-109 16-67 (69)
37 1kbe_A Kinase suppressor of RA 63.8 0.92 3.2E-05 27.8 -0.9 31 65-97 6-36 (49)
38 2ehe_A Four and A half LIM dom 63.6 4.1 0.00014 25.2 2.1 23 87-109 2-26 (82)
39 2dlo_A Thyroid receptor-intera 63.3 4.4 0.00015 25.1 2.2 40 73-113 15-56 (81)
40 2jtn_A LIM domain-binding prot 62.5 1.9 6.4E-05 31.0 0.4 37 75-111 89-132 (182)
41 1iym_A EL5; ring-H2 finger, ub 62.1 3.6 0.00012 23.4 1.5 23 86-108 27-53 (55)
42 1v6g_A Actin binding LIM prote 61.0 5.3 0.00018 24.8 2.3 11 74-84 16-26 (81)
43 2xeu_A Ring finger protein 4; 60.7 1 3.6E-05 26.2 -1.0 25 86-110 28-56 (64)
44 2d8t_A Dactylidin, ring finger 60.3 1.3 4.5E-05 27.0 -0.7 37 74-110 16-61 (71)
45 3ng2_A RNF4, snurf, ring finge 59.7 1.1 3.9E-05 26.7 -1.0 37 74-110 11-63 (71)
46 1x4j_A Ring finger protein 38; 58.9 2.8 9.5E-05 25.6 0.7 38 73-110 23-72 (75)
47 2djb_A Polycomb group ring fin 58.5 2.8 9.5E-05 25.5 0.6 37 74-110 16-62 (72)
48 2ct2_A Tripartite motif protei 58.4 2.1 7.1E-05 26.5 0.0 36 74-109 16-67 (88)
49 2kiz_A E3 ubiquitin-protein li 58.1 2.5 8.4E-05 25.3 0.3 37 74-110 15-63 (69)
50 1jm7_B BARD1, BRCA1-associated 57.3 5.8 0.0002 26.4 2.1 36 74-109 23-66 (117)
51 2ep4_A Ring finger protein 24; 56.5 2.6 8.7E-05 25.6 0.2 42 74-115 16-69 (74)
52 1rut_X Flinc4, fusion protein 56.4 1.5 5E-05 31.8 -1.1 35 75-109 34-80 (188)
53 2yur_A Retinoblastoma-binding 55.4 3.8 0.00013 25.2 0.9 37 74-110 16-64 (74)
54 2ysj_A Tripartite motif-contai 55.3 3 0.0001 24.6 0.3 23 74-96 21-48 (63)
55 1rmd_A RAG1; V(D)J recombinati 53.0 2.7 9.1E-05 27.8 -0.2 37 74-110 24-70 (116)
56 4ap4_A E3 ubiquitin ligase RNF 52.2 2.4 8.2E-05 27.7 -0.5 37 74-110 8-60 (133)
57 1a7i_A QCRP2 (LIM1); LIM domai 52.0 4.5 0.00015 25.1 0.8 32 75-106 36-75 (81)
58 3hct_A TNF receptor-associated 50.6 3.3 0.00011 27.7 0.0 38 74-111 19-66 (118)
59 2yho_A E3 ubiquitin-protein li 49.7 4.6 0.00016 25.7 0.6 38 74-111 19-62 (79)
60 2c6a_A Ubiquitin-protein ligas 48.8 5.9 0.0002 24.6 1.0 21 74-95 14-34 (46)
61 2k0a_A PRE-mRNA-splicing facto 48.6 3.4 0.00012 29.8 -0.2 27 69-95 53-79 (109)
62 2a20_A Regulating synaptic mem 46.5 5 0.00017 26.4 0.4 36 73-110 9-45 (62)
63 2ecm_A Ring finger and CHY zin 46.4 6 0.00021 22.3 0.7 36 74-109 6-54 (55)
64 2ckl_A Polycomb group ring fin 46.3 3.5 0.00012 27.0 -0.4 37 74-110 16-62 (108)
65 3t6p_A Baculoviral IAP repeat- 45.1 10 0.00035 30.8 2.1 38 74-111 296-339 (345)
66 1x4l_A Skeletal muscle LIM-pro 43.3 19 0.00064 21.6 2.7 13 100-112 37-49 (72)
67 2y1n_A E3 ubiquitin-protein li 43.3 6.1 0.00021 33.2 0.5 39 73-111 332-380 (389)
68 2y43_A E3 ubiquitin-protein li 43.1 4.6 0.00016 25.9 -0.2 36 75-110 24-69 (99)
69 1z6u_A NP95-like ring finger p 42.1 4.7 0.00016 28.6 -0.3 38 74-111 79-126 (150)
70 2cr8_A MDM4 protein; ZF-ranbp 41.9 7.5 0.00026 24.9 0.7 21 74-95 12-32 (53)
71 2c2l_A CHIP, carboxy terminus 41.8 6.4 0.00022 28.8 0.4 37 73-109 208-254 (281)
72 2vje_B MDM4 protein; proto-onc 41.7 2.7 9.4E-05 25.6 -1.4 38 74-111 8-57 (63)
73 3vk6_A E3 ubiquitin-protein li 39.6 6.8 0.00023 27.7 0.2 30 87-116 21-55 (101)
74 2cu8_A Cysteine-rich protein 2 35.3 24 0.00083 21.3 2.3 12 100-111 38-49 (76)
75 1nyp_A Pinch protein; LIM doma 34.4 26 0.0009 20.5 2.3 12 100-111 33-44 (66)
76 2ecn_A Ring finger protein 141 29.5 4.3 0.00015 24.3 -2.0 38 74-111 16-61 (70)
77 2iyb_E Testin, TESS, TES; LIM 28.4 22 0.00074 21.1 1.2 12 100-111 34-45 (65)
78 1wyh_A SLIM 2, skeletal muscle 28.2 32 0.0011 20.3 1.9 12 100-111 35-46 (72)
79 1iml_A CRIP, cysteine rich int 27.4 17 0.00058 22.1 0.5 34 75-108 29-71 (76)
80 1x68_A FHL5 protein; four-and- 27.3 27 0.00094 21.2 1.5 9 75-83 37-45 (76)
81 1x4k_A Skeletal muscle LIM-pro 26.9 27 0.00092 20.7 1.4 35 74-112 6-47 (72)
82 3j21_g 50S ribosomal protein L 26.3 23 0.0008 21.9 1.1 22 75-97 16-37 (51)
83 2co8_A NEDD9 interacting prote 25.9 63 0.0022 20.0 3.1 9 75-83 44-52 (82)
84 1g47_A Pinch protein; LIM doma 25.2 52 0.0018 19.6 2.5 13 100-112 41-53 (77)
85 2xzf_A Formamidopyrimidine-DNA 25.1 21 0.00071 27.8 0.8 32 64-95 233-269 (271)
86 1x61_A Thyroid receptor intera 25.0 48 0.0016 19.6 2.3 11 100-110 35-45 (72)
87 2vje_A E3 ubiquitin-protein li 24.7 6.7 0.00023 23.8 -1.7 38 74-111 9-58 (64)
88 3lrq_A E3 ubiquitin-protein li 24.6 13 0.00045 24.1 -0.4 36 74-109 23-69 (100)
89 1ee8_A MUTM (FPG) protein; bet 24.6 23 0.0008 27.6 1.0 32 64-95 226-262 (266)
90 3u6p_A Formamidopyrimidine-DNA 24.3 17 0.00058 28.5 0.1 31 64-94 236-271 (273)
91 1k82_A Formamidopyrimidine-DNA 23.3 23 0.0008 27.5 0.8 31 64-94 231-266 (268)
92 2kq9_A DNAK suppressor protein 23.2 20 0.00067 24.6 0.3 11 99-109 82-92 (112)
93 2ot8_C HnRNP M, heterogeneous 23.1 23 0.00078 20.3 0.5 8 64-71 19-26 (30)
94 1zfo_A LAsp-1; LIM domain, zin 22.8 31 0.0011 18.6 1.0 12 99-110 4-15 (31)
95 1klr_A Zinc finger Y-chromosom 22.3 25 0.00085 15.9 0.5 13 100-112 4-16 (30)
96 1k3x_A Endonuclease VIII; hydr 22.0 20 0.00069 27.8 0.1 30 65-94 226-260 (262)
97 2ecl_A Ring-box protein 2; RNF 21.9 26 0.00088 21.9 0.6 24 86-109 48-75 (81)
98 1e7l_A GP49, recombination end 21.8 27 0.00091 26.2 0.8 14 96-109 18-31 (157)
99 2lvu_A Zinc finger and BTB dom 27.3 19 0.00066 16.3 0.0 11 100-110 4-14 (26)
100 2m0e_A Zinc finger and BTB dom 21.5 31 0.0011 15.4 0.8 12 100-111 4-15 (29)
101 2d8y_A Eplin protein; LIM doma 21.4 69 0.0024 20.0 2.6 12 100-111 44-55 (91)
102 2dar_A PDZ and LIM domain prot 21.0 69 0.0023 20.0 2.6 39 72-114 24-67 (90)
103 1v87_A Deltex protein 2; ring- 20.6 32 0.0011 22.2 0.9 24 86-109 61-93 (114)
104 2lvr_A Zinc finger and BTB dom 25.7 22 0.00074 16.3 0.0 11 100-110 5-15 (30)
105 1paa_A Yeast transcription fac 20.2 28 0.00096 15.9 0.4 13 100-112 4-16 (30)
106 1zbd_B Rabphilin-3A; G protein 20.0 28 0.00097 24.8 0.6 36 73-110 55-92 (134)
107 2lvt_A Zinc finger and BTB dom 25.2 22 0.00076 16.3 0.0 12 100-111 4-15 (29)
No 1
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=87.88 E-value=0.091 Score=35.94 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=28.3
Q ss_pred cchhhhhhcc--------cCCCccCcccccc----cccccccCccccc
Q psy8320 75 SCKICRQKVH--------QVGSHYCQACAYK----KGICAMCGKKLLD 110 (119)
Q Consensus 75 ~C~iCK~~vh--------q~g~~YCq~CAYk----kGiCamCGKki~D 110 (119)
+|..|+..+. .+|..||..|-.+ +|.|+.|++.|.+
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 7788877773 3467899999875 4699999999985
No 2
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.69 E-value=0.32 Score=29.33 Aligned_cols=37 Identities=19% Similarity=0.680 Sum_probs=28.2
Q ss_pred ccchhhhhhcccC-----CCccCccccc-----ccccccccCccccc
Q psy8320 74 ESCKICRQKVHQV-----GSHYCQACAY-----KKGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vhq~-----g~~YCq~CAY-----kkGiCamCGKki~D 110 (119)
-.|.||...+..+ ||.||..|.. ....|.+|...+..
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4788887765443 8899999986 24579999998864
No 3
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=86.26 E-value=0.23 Score=30.50 Aligned_cols=36 Identities=31% Similarity=0.782 Sum_probs=27.8
Q ss_pred ccchhhhhhccc-----CCCccCcccccc-----------cccccccCcccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYK-----------KGICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYk-----------kGiCamCGKki~ 109 (119)
-.|.||...... =||.||..|... ...|.+|...+.
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 378888765543 388999999874 668999999875
No 4
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.99 E-value=0.3 Score=29.99 Aligned_cols=36 Identities=31% Similarity=0.774 Sum_probs=28.7
Q ss_pred ccchhhhhhccc-----CCCccCcccccc----------cccccccCcccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYk----------kGiCamCGKki~ 109 (119)
..|.||...+.. =||.||..|... ...|.+|...+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 478888876543 388999999865 678999999876
No 5
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.87 E-value=0.18 Score=30.40 Aligned_cols=35 Identities=31% Similarity=0.789 Sum_probs=25.4
Q ss_pred cchhhhh-hc---------ccCCCccCccccccc-----ccccccCcccc
Q psy8320 75 SCKICRQ-KV---------HQVGSHYCQACAYKK-----GICAMCGKKLL 109 (119)
Q Consensus 75 ~C~iCK~-~v---------hq~g~~YCq~CAYkk-----GiCamCGKki~ 109 (119)
.|.||.. .. ..=||.||..|..+- ..|.+|++.+.
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 6777777 22 234889999997433 57999999885
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.47 E-value=0.34 Score=29.73 Aligned_cols=36 Identities=28% Similarity=0.750 Sum_probs=28.5
Q ss_pred ccchhhhhhccc-----CCCccCcccccc----------cccccccCcccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYk----------kGiCamCGKki~ 109 (119)
-.|.||...+.. =||.||..|... ...|.+|...+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 479999876543 388999999865 668999999876
No 7
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=80.38 E-value=0.74 Score=27.54 Aligned_cols=38 Identities=24% Similarity=0.638 Sum_probs=27.8
Q ss_pred ccchhhhhhcccC------CCccCcccccc----cccccccCcccccc
Q psy8320 74 ESCKICRQKVHQV------GSHYCQACAYK----KGICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vhq~------g~~YCq~CAYk----kGiCamCGKki~Dt 111 (119)
..|.||...+..+ ||.||..|..+ ...|.+|...+...
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 4677776655432 78899999853 57899999988644
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=78.51 E-value=0.32 Score=30.06 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=26.5
Q ss_pred ccchhhhhhccc-----CCCccCcccccc-----cccccccCcccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYk-----kGiCamCGKki~ 109 (119)
-.|.||..-+.. -||.||..|... ...|.+|+..+.
T Consensus 9 ~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 367777764433 388999999642 568999999885
No 9
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=77.80 E-value=0.45 Score=34.00 Aligned_cols=37 Identities=27% Similarity=0.657 Sum_probs=30.3
Q ss_pred ccchhhhhhcccCCCcc-Ccccc---cccccccccCccccc
Q psy8320 74 ESCKICRQKVHQVGSHY-CQACA---YKKGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vhq~g~~Y-Cq~CA---YkkGiCamCGKki~D 110 (119)
..|.+|.+.+.+.|..| |..|. -+.+.|+-||..+--
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHH
Confidence 58999999987767777 88886 456899999998863
No 10
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.79 E-value=1.2 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.507 Sum_probs=25.4
Q ss_pred cchhhhhhccc-----CCCccCccccccc-ccccccCcccc
Q psy8320 75 SCKICRQKVHQ-----VGSHYCQACAYKK-GICAMCGKKLL 109 (119)
Q Consensus 75 ~C~iCK~~vhq-----~g~~YCq~CAYkk-GiCamCGKki~ 109 (119)
.|.||...... =||.||..|.... ..|.+|...+.
T Consensus 8 ~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred CceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 57777664433 3889999998753 47999998865
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.32 E-value=0.42 Score=28.97 Aligned_cols=36 Identities=22% Similarity=0.664 Sum_probs=27.4
Q ss_pred ccchhhhhhccc-----CCCccCccccccc-------ccccccCcccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYKK-------GICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYkk-------GiCamCGKki~ 109 (119)
..|.||...+.. =||.||..|...- ..|.+|...+.
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 489999875543 3889999998543 37999999875
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=76.73 E-value=0.69 Score=29.37 Aligned_cols=36 Identities=25% Similarity=0.717 Sum_probs=26.9
Q ss_pred ccchhhhhhccc----C--CCccCccccccc------ccccccCcccc
Q psy8320 74 ESCKICRQKVHQ----V--GSHYCQACAYKK------GICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vhq----~--g~~YCq~CAYkk------GiCamCGKki~ 109 (119)
-.|.||...+.. + ||.||..|...- ..|.+|...+.
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 378888775443 2 899999997432 38999999874
No 13
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.76 E-value=1.6 Score=27.05 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=5.8
Q ss_pred cccccCcccccc
Q psy8320 100 ICAMCGKKLLDV 111 (119)
Q Consensus 100 iCamCGKki~Dt 111 (119)
.|+.|++.+.+.
T Consensus 43 ~C~~C~~~L~~~ 54 (80)
T 1x3h_A 43 VCGDCFTSFSTG 54 (80)
T ss_dssp BCSSSCCBSCSS
T ss_pred ChhhCCCCCCCC
Confidence 355555555443
No 14
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.55 E-value=1.6 Score=27.04 Aligned_cols=11 Identities=18% Similarity=0.679 Sum_probs=5.9
Q ss_pred ccchhhhhhcc
Q psy8320 74 ESCKICRQKVH 84 (119)
Q Consensus 74 ~~C~iCK~~vh 84 (119)
.+|..|...|.
T Consensus 16 ~~C~~C~~~I~ 26 (80)
T 2cuq_A 16 PRCARCSKTLT 26 (80)
T ss_dssp CCCTTTCCCCC
T ss_pred CcCCCCCCEec
Confidence 35555555553
No 15
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.76 E-value=2 Score=26.85 Aligned_cols=39 Identities=18% Similarity=0.534 Sum_probs=30.3
Q ss_pred Cccchhhhhhccc-----CCCc-cCcccccccccccccCcccccc
Q psy8320 73 FESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 111 (119)
Q Consensus 73 ~~~C~iCK~~vhq-----~g~~-YCq~CAYkkGiCamCGKki~Dt 111 (119)
...|.||-..... =||. +|..|+-....|.+|-..|.++
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQES 59 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCE
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhce
Confidence 4578888664332 3566 8999999999999999999764
No 16
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.27 E-value=0.76 Score=29.92 Aligned_cols=35 Identities=23% Similarity=0.789 Sum_probs=26.4
Q ss_pred cchhhhhhcccC-----CCccCcccccc---c----ccccccCcccc
Q psy8320 75 SCKICRQKVHQV-----GSHYCQACAYK---K----GICAMCGKKLL 109 (119)
Q Consensus 75 ~C~iCK~~vhq~-----g~~YCq~CAYk---k----GiCamCGKki~ 109 (119)
.|.||...+..+ ||.||..|... . ..|.+|...+.
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 788887755443 88999999743 1 27999999876
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.06 E-value=0.36 Score=30.21 Aligned_cols=35 Identities=29% Similarity=0.728 Sum_probs=27.2
Q ss_pred cchhhhhhcccC-----CCccCcccccc----cccccccCcccc
Q psy8320 75 SCKICRQKVHQV-----GSHYCQACAYK----KGICAMCGKKLL 109 (119)
Q Consensus 75 ~C~iCK~~vhq~-----g~~YCq~CAYk----kGiCamCGKki~ 109 (119)
.|.||...+..+ ||.||..|... ...|.+|...+.
T Consensus 17 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 17 RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp BCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 788887765443 88999999843 457999999875
No 18
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=72.18 E-value=1.7 Score=26.71 Aligned_cols=38 Identities=18% Similarity=0.600 Sum_probs=28.1
Q ss_pred ccchhhhhhcc--------cCCCccCccccc----ccccccccCcccccc
Q psy8320 74 ESCKICRQKVH--------QVGSHYCQACAY----KKGICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vh--------q~g~~YCq~CAY----kkGiCamCGKki~Dt 111 (119)
..|.||...+. .=||.||..|.. ....|.+|...+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 47888865443 237889999986 467899999988743
No 19
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=71.99 E-value=0.63 Score=31.42 Aligned_cols=36 Identities=28% Similarity=0.794 Sum_probs=24.3
Q ss_pred cchhhhhhcc--------cCCCccCccccccc----ccccccCccccc
Q psy8320 75 SCKICRQKVH--------QVGSHYCQACAYKK----GICAMCGKKLLD 110 (119)
Q Consensus 75 ~C~iCK~~vh--------q~g~~YCq~CAYkk----GiCamCGKki~D 110 (119)
+|..|+..+. .+|..||..|-.+. ++|+.|++.|..
T Consensus 31 ~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 31 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp BCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred ccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 6777776663 13567888887642 378888888863
No 20
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.97 E-value=1.3 Score=27.55 Aligned_cols=38 Identities=29% Similarity=0.583 Sum_probs=29.7
Q ss_pred ccchhhhhhccc-----CCCc-cCcccccccccccccCcccccc
Q psy8320 74 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~-YCq~CAYkkGiCamCGKki~Dt 111 (119)
..|.||...... =||. +|..|+-+...|.+|...|.++
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCc
Confidence 378888654432 3666 9999999999999999998764
No 21
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=71.90 E-value=1.1 Score=30.53 Aligned_cols=34 Identities=26% Similarity=0.923 Sum_probs=16.7
Q ss_pred cchhhhhhcccCCCcc-Ccccc--c-ccccccccCccc
Q psy8320 75 SCKICRQKVHQVGSHY-CQACA--Y-KKGICAMCGKKL 108 (119)
Q Consensus 75 ~C~iCK~~vhq~g~~Y-Cq~CA--Y-kkGiCamCGKki 108 (119)
.|..|.+.+.+.+..| |..|. | +.+.|.-||.++
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCccccCCCceECccccccCCCcccCcchhhHH
Confidence 4555555554444443 55554 2 223555555554
No 22
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=71.59 E-value=2.3 Score=26.08 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=13.4
Q ss_pred CccCccccccc--ccccccCccccc
Q psy8320 88 SHYCQACAYKK--GICAMCGKKLLD 110 (119)
Q Consensus 88 ~~YCq~CAYkk--GiCamCGKki~D 110 (119)
..||..|-++. .+|+.||+.|.+
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~ 27 (77)
T 2egq_A 3 SGSSGDCYKNFVAKKCAGCKNPITG 27 (77)
T ss_dssp SSCCTTCCCSCCCCCCSSSCCCCCC
T ss_pred CeEchhHhchhhCccCcccCCcccC
Confidence 35666665442 456666666664
No 23
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=71.34 E-value=1 Score=29.08 Aligned_cols=35 Identities=20% Similarity=0.573 Sum_probs=26.3
Q ss_pred cchhhhhhcc------cCCCccCccccccc--ccccccCcccc
Q psy8320 75 SCKICRQKVH------QVGSHYCQACAYKK--GICAMCGKKLL 109 (119)
Q Consensus 75 ~C~iCK~~vh------q~g~~YCq~CAYkk--GiCamCGKki~ 109 (119)
+|..|+..+. .+|..||..|..+. ..|+.|++.|.
T Consensus 35 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 6777776653 23667899997654 59999999998
No 24
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=71.31 E-value=0.95 Score=31.96 Aligned_cols=36 Identities=28% Similarity=0.741 Sum_probs=27.8
Q ss_pred cchhhhhhcc------cCCCccCcccccc-----cccccccCccccc
Q psy8320 75 SCKICRQKVH------QVGSHYCQACAYK-----KGICAMCGKKLLD 110 (119)
Q Consensus 75 ~C~iCK~~vh------q~g~~YCq~CAYk-----kGiCamCGKki~D 110 (119)
.|.||...+. .=||.||..|..+ ...|.+|+..+..
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 7999976443 3489999999854 5689999999854
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=70.31 E-value=0.84 Score=31.58 Aligned_cols=35 Identities=26% Similarity=0.700 Sum_probs=26.8
Q ss_pred cchhhhhhcc-----cCCCccCcccccc----cccccccCcccc
Q psy8320 75 SCKICRQKVH-----QVGSHYCQACAYK----KGICAMCGKKLL 109 (119)
Q Consensus 75 ~C~iCK~~vh-----q~g~~YCq~CAYk----kGiCamCGKki~ 109 (119)
.|.||..... .=||.||..|... ...|++|.+.|.
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 6888876543 2389999999753 578999998875
No 26
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=70.06 E-value=1.3 Score=29.27 Aligned_cols=35 Identities=20% Similarity=0.666 Sum_probs=25.9
Q ss_pred cchhhhhhccc-----CCCccCcccccc-----cccccccCcccc
Q psy8320 75 SCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLL 109 (119)
Q Consensus 75 ~C~iCK~~vhq-----~g~~YCq~CAYk-----kGiCamCGKki~ 109 (119)
.|.||...+.. =||.||..|..+ ...|.+|...+.
T Consensus 17 ~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp BCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 68888754433 378899999754 448999999875
No 27
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=68.61 E-value=0.82 Score=30.73 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=13.1
Q ss_pred CCccCccccccc--ccccccCcccc
Q psy8320 87 GSHYCQACAYKK--GICAMCGKKLL 109 (119)
Q Consensus 87 g~~YCq~CAYkk--GiCamCGKki~ 109 (119)
|..||..|-.+. ..|+.||+.|.
T Consensus 50 g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CEEechHHhCcCcCccCcccCCcCC
Confidence 445666665442 35666666665
No 28
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=68.54 E-value=1.6 Score=28.13 Aligned_cols=37 Identities=24% Similarity=0.741 Sum_probs=28.5
Q ss_pred ccchhhhhhccc---------CCCccCcccccc-----cccccccCccccc
Q psy8320 74 ESCKICRQKVHQ---------VGSHYCQACAYK-----KGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vhq---------~g~~YCq~CAYk-----kGiCamCGKki~D 110 (119)
..|.||-..+.. =||.+|+.|... .+.|..|-+.+.+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 478899887743 489999999644 4689999998764
No 29
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=68.38 E-value=1.5 Score=27.35 Aligned_cols=38 Identities=29% Similarity=0.583 Sum_probs=30.8
Q ss_pred ccchhhhhhccc-----CCCc-cCcccccccccccccCcccccc
Q psy8320 74 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~-YCq~CAYkkGiCamCGKki~Dt 111 (119)
..|.||...... =||. +|..|+..-..|.+|-..|.++
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK 68 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCc
Confidence 479999875543 3777 9999999999999999998754
No 30
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.62 E-value=3.1 Score=25.81 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=17.9
Q ss_pred CccchhhhhhcccCCCccCccccccc--ccccccCccccc
Q psy8320 73 FESCKICRQKVHQVGSHYCQACAYKK--GICAMCGKKLLD 110 (119)
Q Consensus 73 ~~~C~iCK~~vhq~g~~YCq~CAYkk--GiCamCGKki~D 110 (119)
..+|..|.+.|.. ...--..=.|.. -.|+.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTG-PFMVAGEFKYHPECFACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCS-CCBCCTTCCBCTTSCBCTTTCCBCCT
T ss_pred CCcCccCCCCcCc-eEEEECCceeccccCCccCCCCccCC
Confidence 3467777777762 211111111111 157777777754
No 31
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=67.16 E-value=1.5 Score=31.16 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=11.7
Q ss_pred CCccCccccccc--ccccccCcccc
Q psy8320 87 GSHYCQACAYKK--GICAMCGKKLL 109 (119)
Q Consensus 87 g~~YCq~CAYkk--GiCamCGKki~ 109 (119)
|..||..|-++. -.|+.|++.|.
T Consensus 52 g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 52 ESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp SCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred CeeeecccccccccccccccccccC
Confidence 445555554432 35555555554
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=66.58 E-value=1.2 Score=29.97 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=27.6
Q ss_pred ccchhhhhhcc-----cCCCccCccccc-----ccccccccCccccc
Q psy8320 74 ESCKICRQKVH-----QVGSHYCQACAY-----KKGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vh-----q~g~~YCq~CAY-----kkGiCamCGKki~D 110 (119)
-.|.||...+. .=||.||..|.. ....|.+|...+..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 37999976543 338889999984 23489999998864
No 33
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.66 E-value=4.1 Score=25.18 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=7.9
Q ss_pred ccchhhhhhccc
Q psy8320 74 ESCKICRQKVHQ 85 (119)
Q Consensus 74 ~~C~iCK~~vhq 85 (119)
.+|..|.+.|..
T Consensus 16 ~~C~~C~~~I~~ 27 (82)
T 1x63_A 16 PKCKGCFKAIVA 27 (82)
T ss_dssp CBCSSSCCBCCS
T ss_pred CcCccCCccccc
Confidence 467777776664
No 34
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=64.15 E-value=3.5 Score=32.39 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=43.1
Q ss_pred cccCCCCCCCCCCccccCCCeec----ccccchhh-hhhccCCCc--ccCccchhhhhhcccCCCccCccc-------cc
Q psy8320 31 KVITPDNWKSGSRNTIESGGRRI----GENKALTA-SKARFNPYT--QKFESCKICRQKVHQVGSHYCQAC-------AY 96 (119)
Q Consensus 31 klatPD~~k~Gs~~~~~~g~rki----~eNKlLs~-~k~r~~Py~--~~~~~C~iCK~~vhq~g~~YCq~C-------AY 96 (119)
.|-+-|.||.|-+. |.++ ++=|-++. .+++-+|=+ .+.+.|+.|...+ ..|=-+- +-
T Consensus 60 ~~~~~~~~~~~~~~-----G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l----r~YGIT~eey~~L~e~ 130 (200)
T 3gox_A 60 ELEAIDIYRTGKGY-----DKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI----DGVKLSSTEKKKMDEI 130 (200)
T ss_dssp GEEECCGGGSSTTS-----SEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH----HCSCCCHHHHHHHHTT
T ss_pred hcceeeeeeccccC-----CCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc----CCcCCCHHHHHHHHHH
Confidence 47889999987532 4444 56666654 234444433 2567899998765 1222211 12
Q ss_pred cc-----ccccccCccccc
Q psy8320 97 KK-----GICAMCGKKLLD 110 (119)
Q Consensus 97 kk-----GiCamCGKki~D 110 (119)
+. |.|++||+....
T Consensus 131 Qg~~~~~G~C~ICg~~~~~ 149 (200)
T 3gox_A 131 APPKGSVFTCPICEKRSIV 149 (200)
T ss_dssp CCCTTCEEECTTTCCEEEB
T ss_pred cccCCCCCcCcCCCCCCCc
Confidence 34 799999998763
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.03 E-value=1.6 Score=25.06 Aligned_cols=31 Identities=29% Similarity=0.917 Sum_probs=21.0
Q ss_pred ccchhhhhhcccC-----CCccCcccccc-------ccccccc
Q psy8320 74 ESCKICRQKVHQV-----GSHYCQACAYK-------KGICAMC 104 (119)
Q Consensus 74 ~~C~iCK~~vhq~-----g~~YCq~CAYk-------kGiCamC 104 (119)
..|.||...+..+ ||.||..|..+ ...|.+|
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4788887765544 78889888643 2456665
No 36
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.89 E-value=0.73 Score=27.29 Aligned_cols=36 Identities=31% Similarity=0.764 Sum_probs=26.6
Q ss_pred ccchhhhhhcc------------cCCCccCcccccc----cccccccCcccc
Q psy8320 74 ESCKICRQKVH------------QVGSHYCQACAYK----KGICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vh------------q~g~~YCq~CAYk----kGiCamCGKki~ 109 (119)
..|.||...+. .=||.||..|..+ ...|.+|...+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 47888876433 3478899999853 568999998764
No 37
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=63.78 E-value=0.92 Score=27.81 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=21.6
Q ss_pred ccCCCcccCccchhhhhhcccCCCccCcccccc
Q psy8320 65 RFNPYTQKFESCKICRQKVHQVGSHYCQACAYK 97 (119)
Q Consensus 65 r~~Py~~~~~~C~iCK~~vhq~g~~YCq~CAYk 97 (119)
||.++......|..|+..|.| | -.|..|.|.
T Consensus 6 rF~~~t~~~t~C~~C~k~i~~-G-~kC~~Ck~~ 36 (49)
T 1kbe_A 6 RFSTKSWLSQVCNVCQKSMIF-G-VKCKHCRLK 36 (49)
T ss_dssp CEEEECCSSCCCSSSCCSSCC-E-EEETTTTEE
T ss_pred ccCccCCCCcCccccCceeEC-c-CCCCCCCCc
Confidence 444443334689999999987 5 678888775
No 38
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.56 E-value=4.1 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=10.9
Q ss_pred CCccCccccccc--ccccccCcccc
Q psy8320 87 GSHYCQACAYKK--GICAMCGKKLL 109 (119)
Q Consensus 87 g~~YCq~CAYkk--GiCamCGKki~ 109 (119)
|..||..|-++. .+|+-|++.|.
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC
T ss_pred CceechhHhCcccCCcCccCCCccc
Confidence 344555554332 34555555554
No 39
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.30 E-value=4.4 Score=25.14 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=19.0
Q ss_pred CccchhhhhhcccCCCccCccccccc--ccccccCcccccccc
Q psy8320 73 FESCKICRQKVHQVGSHYCQACAYKK--GICAMCGKKLLDVKN 113 (119)
Q Consensus 73 ~~~C~iCK~~vhq~g~~YCq~CAYkk--GiCamCGKki~Dt~~ 113 (119)
..+|..|.+.|... .--=..-.|.. -.|+.|++.|.+...
T Consensus 15 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f 56 (81)
T 2dlo_A 15 LEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPF 56 (81)
T ss_dssp CCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCTTSCE
T ss_pred CCccccCCCeecce-eEEECCccccHHhcCcccCCCccCCCee
Confidence 45777777777631 10000011111 156777777665433
No 40
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=62.54 E-value=1.9 Score=31.04 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=27.9
Q ss_pred cchhhhhhcc-----cCCCccCccccccc--ccccccCcccccc
Q psy8320 75 SCKICRQKVH-----QVGSHYCQACAYKK--GICAMCGKKLLDV 111 (119)
Q Consensus 75 ~C~iCK~~vh-----q~g~~YCq~CAYkk--GiCamCGKki~Dt 111 (119)
+|..|+..+. .+|..||..|.++. -.|+.|++.|...
T Consensus 89 ~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 89 KCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPT 132 (182)
T ss_dssp SCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSS
T ss_pred ccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCC
Confidence 7888887764 24678899987765 5899999988743
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=62.08 E-value=3.6 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.599 Sum_probs=17.5
Q ss_pred CCCccCcccccc----cccccccCccc
Q psy8320 86 VGSHYCQACAYK----KGICAMCGKKL 108 (119)
Q Consensus 86 ~g~~YCq~CAYk----kGiCamCGKki 108 (119)
=||.||..|..+ ...|.+|...+
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 367788888753 67899998765
No 42
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.97 E-value=5.3 Score=24.75 Aligned_cols=11 Identities=27% Similarity=0.612 Sum_probs=6.4
Q ss_pred ccchhhhhhcc
Q psy8320 74 ESCKICRQKVH 84 (119)
Q Consensus 74 ~~C~iCK~~vh 84 (119)
.+|..|...|.
T Consensus 16 ~~C~~C~~~I~ 26 (81)
T 1v6g_A 16 TRCFSCDQFIE 26 (81)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCccccCEec
Confidence 35666666555
No 43
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=60.72 E-value=1 Score=26.20 Aligned_cols=25 Identities=28% Similarity=0.773 Sum_probs=19.7
Q ss_pred CCCccCccccc----ccccccccCccccc
Q psy8320 86 VGSHYCQACAY----KKGICAMCGKKLLD 110 (119)
Q Consensus 86 ~g~~YCq~CAY----kkGiCamCGKki~D 110 (119)
=||.||..|.. ....|.+|...+..
T Consensus 28 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 28 CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 37889999975 35689999988763
No 44
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.25 E-value=1.3 Score=26.96 Aligned_cols=37 Identities=24% Similarity=0.661 Sum_probs=27.3
Q ss_pred ccchhhhhhccc-----CCCccCcccccc----cccccccCccccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYK----KGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYk----kGiCamCGKki~D 110 (119)
..|.||...+.. =||.||..|..+ ...|.+|...|..
T Consensus 16 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 378888765443 378899999753 3689999998763
No 45
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=59.70 E-value=1.1 Score=26.74 Aligned_cols=37 Identities=30% Similarity=0.749 Sum_probs=27.3
Q ss_pred ccchhhhhhcc------------cCCCccCccccc----ccccccccCccccc
Q psy8320 74 ESCKICRQKVH------------QVGSHYCQACAY----KKGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vh------------q~g~~YCq~CAY----kkGiCamCGKki~D 110 (119)
..|.||...+. .=||.||..|.. ....|.+|...+..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 47888876432 237889999984 45699999988763
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.94 E-value=2.8 Score=25.64 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=28.5
Q ss_pred CccchhhhhhcccC--------CCccCccccc----ccccccccCccccc
Q psy8320 73 FESCKICRQKVHQV--------GSHYCQACAY----KKGICAMCGKKLLD 110 (119)
Q Consensus 73 ~~~C~iCK~~vhq~--------g~~YCq~CAY----kkGiCamCGKki~D 110 (119)
...|.||-..+..+ ||.||..|.. ....|.+|-..+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45899998765543 7788999975 35689999887754
No 47
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.50 E-value=2.8 Score=25.52 Aligned_cols=37 Identities=19% Similarity=0.606 Sum_probs=27.7
Q ss_pred ccchhhhhhcc------cCCCccCcccccc----cccccccCccccc
Q psy8320 74 ESCKICRQKVH------QVGSHYCQACAYK----KGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vh------q~g~~YCq~CAYk----kGiCamCGKki~D 110 (119)
..|.||...+. .=||.||..|... ...|.+|...+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 47888876543 4478899999743 5689999998864
No 48
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.42 E-value=2.1 Score=26.51 Aligned_cols=36 Identities=28% Similarity=0.644 Sum_probs=26.9
Q ss_pred ccchhhhhhccc---------CCCccCccccccc-------ccccccCcccc
Q psy8320 74 ESCKICRQKVHQ---------VGSHYCQACAYKK-------GICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vhq---------~g~~YCq~CAYkk-------GiCamCGKki~ 109 (119)
..|.||...... =||.||..|..+- ..|.+|.+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 478888765543 3788999997532 68999999764
No 49
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=58.12 E-value=2.5 Score=25.30 Aligned_cols=37 Identities=22% Similarity=0.537 Sum_probs=26.3
Q ss_pred ccchhhhhhcc--------cCCCccCccccc----ccccccccCccccc
Q psy8320 74 ESCKICRQKVH--------QVGSHYCQACAY----KKGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vh--------q~g~~YCq~CAY----kkGiCamCGKki~D 110 (119)
..|.||...+. .=||.||..|.. ....|.+|...|..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 47888855442 227788999986 35789999988753
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.30 E-value=5.8 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.474 Sum_probs=26.7
Q ss_pred ccchhhhhhcc------cCCCccCccccccc--ccccccCcccc
Q psy8320 74 ESCKICRQKVH------QVGSHYCQACAYKK--GICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vh------q~g~~YCq~CAYkk--GiCamCGKki~ 109 (119)
-.|.||...+. .=||.||..|...- ..|.+|...+.
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 36777765331 34889999998655 68999999874
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.53 E-value=2.6 Score=25.57 Aligned_cols=42 Identities=19% Similarity=0.646 Sum_probs=30.3
Q ss_pred ccchhhhhhcc--------cCCCccCcccccc----cccccccCcccccccccc
Q psy8320 74 ESCKICRQKVH--------QVGSHYCQACAYK----KGICAMCGKKLLDVKNYK 115 (119)
Q Consensus 74 ~~C~iCK~~vh--------q~g~~YCq~CAYk----kGiCamCGKki~Dt~~yk 115 (119)
..|.||-..+. .=||.||..|..+ ...|.+|...+.++....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 47888876643 2367788888753 568999999998776543
No 52
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=56.44 E-value=1.5 Score=31.84 Aligned_cols=35 Identities=23% Similarity=0.697 Sum_probs=21.6
Q ss_pred cchhhhhhcc--------cCCCccCccccccc----ccccccCcccc
Q psy8320 75 SCKICRQKVH--------QVGSHYCQACAYKK----GICAMCGKKLL 109 (119)
Q Consensus 75 ~C~iCK~~vh--------q~g~~YCq~CAYkk----GiCamCGKki~ 109 (119)
+|..|+..+. .+|..||..|..+. ++|+.|++.|.
T Consensus 34 ~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 6666665543 23566777776542 25777777775
No 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=55.38 E-value=3.8 Score=25.19 Aligned_cols=37 Identities=24% Similarity=0.702 Sum_probs=26.0
Q ss_pred ccchhhhhhccc----C--CCccCccccccc------ccccccCccccc
Q psy8320 74 ESCKICRQKVHQ----V--GSHYCQACAYKK------GICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vhq----~--g~~YCq~CAYkk------GiCamCGKki~D 110 (119)
-.|.||...+.. + ||.||..|...- ..|.+|...+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 368888764432 2 899999997332 489999997653
No 54
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.28 E-value=3 Score=24.57 Aligned_cols=23 Identities=26% Similarity=0.768 Sum_probs=17.9
Q ss_pred ccchhhhhhcccC-----CCccCccccc
Q psy8320 74 ESCKICRQKVHQV-----GSHYCQACAY 96 (119)
Q Consensus 74 ~~C~iCK~~vhq~-----g~~YCq~CAY 96 (119)
..|.||...+..+ ||.||..|..
T Consensus 21 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~ 48 (63)
T 2ysj_A 21 VICPICLDILQKPVTIDCGHNFCLKCIT 48 (63)
T ss_dssp CBCTTTCSBCSSCEECTTSSEECHHHHH
T ss_pred CCCCcCCchhCCeEEeCCCCcchHHHHH
Confidence 4899998766554 8899999974
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=53.00 E-value=2.7 Score=27.82 Aligned_cols=37 Identities=22% Similarity=0.662 Sum_probs=27.9
Q ss_pred ccchhhhhhccc-----CCCccCcccccc-----cccccccCccccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYk-----kGiCamCGKki~D 110 (119)
-.|.||...+.. =||.||..|... ...|++|...+..
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 378888765443 389999999752 5689999998764
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=52.23 E-value=2.4 Score=27.74 Aligned_cols=37 Identities=30% Similarity=0.777 Sum_probs=27.6
Q ss_pred ccchhhhhhcccC------------CCccCccccc----ccccccccCccccc
Q psy8320 74 ESCKICRQKVHQV------------GSHYCQACAY----KKGICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vhq~------------g~~YCq~CAY----kkGiCamCGKki~D 110 (119)
..|.||...+..+ ||.||..|.. .+..|.+|.+.+..
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4788887654332 8899999984 45689999998863
No 57
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=52.02 E-value=4.5 Score=25.08 Aligned_cols=32 Identities=28% Similarity=0.600 Sum_probs=13.5
Q ss_pred cchhhhhhccc------CCCccCccccccc--ccccccCc
Q psy8320 75 SCKICRQKVHQ------VGSHYCQACAYKK--GICAMCGK 106 (119)
Q Consensus 75 ~C~iCK~~vhq------~g~~YCq~CAYkk--GiCamCGK 106 (119)
+|..|+..+.. ++.-||..|-.+. -.|+.||.
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~ 75 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECSHHHHHHCC--------
T ss_pred ccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCC
Confidence 56667665533 2445677665443 35666654
No 58
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=50.64 E-value=3.3 Score=27.68 Aligned_cols=38 Identities=29% Similarity=0.697 Sum_probs=28.2
Q ss_pred ccchhhhhhccc-----CCCccCcccccc----c-ccccccCcccccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYK----K-GICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYk----k-GiCamCGKki~Dt 111 (119)
-.|.||...+.. =||.||..|..+ . ..|.+|...+...
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 478888765443 388899999854 2 3899999988753
No 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=49.68 E-value=4.6 Score=25.72 Aligned_cols=38 Identities=24% Similarity=0.663 Sum_probs=29.6
Q ss_pred ccchhhhhhccc-----CCCc-cCcccccccccccccCcccccc
Q psy8320 74 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~-YCq~CAYkkGiCamCGKki~Dt 111 (119)
..|.||...... =||. +|..|+..-..|.+|-..|..+
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCe
Confidence 478888664432 3666 8999999888999999998754
No 60
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=48.80 E-value=5.9 Score=24.63 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=16.5
Q ss_pred ccchhhhhhcccCCCccCcccc
Q psy8320 74 ESCKICRQKVHQVGSHYCQACA 95 (119)
Q Consensus 74 ~~C~iCK~~vhq~g~~YCq~CA 95 (119)
=+|..|+ +...|-.-||+.|-
T Consensus 14 WkC~~C~-~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 14 WKCTSCN-EMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTC-CEECSSCSSCTTTC
T ss_pred Eeccccc-ccCCCccchhhHHH
Confidence 3799999 55666789999984
No 61
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=48.57 E-value=3.4 Score=29.81 Aligned_cols=27 Identities=26% Similarity=0.731 Sum_probs=20.5
Q ss_pred CcccCccchhhhhhcccCCCccCcccc
Q psy8320 69 YTQKFESCKICRQKVHQVGSHYCQACA 95 (119)
Q Consensus 69 y~~~~~~C~iCK~~vhq~g~~YCq~CA 95 (119)
|+.+..+|.||........+.||..|-
T Consensus 53 ~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 53 FGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp TSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred CCCcCCceEEcCCCCCcccceehHhhh
Confidence 444567999999665555689999986
No 62
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=46.50 E-value=5 Score=26.39 Aligned_cols=36 Identities=33% Similarity=0.745 Sum_probs=26.6
Q ss_pred Cccchhhhh-hcccCCCccCcccccccccccccCccccc
Q psy8320 73 FESCKICRQ-KVHQVGSHYCQACAYKKGICAMCGKKLLD 110 (119)
Q Consensus 73 ~~~C~iCK~-~vhq~g~~YCq~CAYkkGiCamCGKki~D 110 (119)
...|.||.. +.....+|-|..|--+ .||.||-.+.-
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r--~CaRCGg~v~l 45 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTK--FCARCGGRVSL 45 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCE--ECTTSEEEEES
T ss_pred cchhhhhccceeccCCCccccccCCe--eecccCCEeee
Confidence 358999954 6666667888877544 89999988763
No 63
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=46.38 E-value=6 Score=22.31 Aligned_cols=36 Identities=22% Similarity=0.577 Sum_probs=24.1
Q ss_pred ccchhhhhhccc---------CCCccCcccccc----cccccccCcccc
Q psy8320 74 ESCKICRQKVHQ---------VGSHYCQACAYK----KGICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vhq---------~g~~YCq~CAYk----kGiCamCGKki~ 109 (119)
..|.||...+.. =||.||..|..+ ...|.+|...|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357777655422 367888888753 367999987763
No 64
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=46.35 E-value=3.5 Score=26.96 Aligned_cols=37 Identities=16% Similarity=0.575 Sum_probs=27.1
Q ss_pred ccchhhhhhcc------cCCCccCccccccc----ccccccCccccc
Q psy8320 74 ESCKICRQKVH------QVGSHYCQACAYKK----GICAMCGKKLLD 110 (119)
Q Consensus 74 ~~C~iCK~~vh------q~g~~YCq~CAYkk----GiCamCGKki~D 110 (119)
-.|.||...+. .=||.||..|...- ..|.+|+..+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 36888866432 44889999997543 789999998874
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=45.13 E-value=10 Score=30.81 Aligned_cols=38 Identities=29% Similarity=0.660 Sum_probs=31.4
Q ss_pred ccchhhhhhcc-----cCCCc-cCcccccccccccccCcccccc
Q psy8320 74 ESCKICRQKVH-----QVGSH-YCQACAYKKGICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vh-----q~g~~-YCq~CAYkkGiCamCGKki~Dt 111 (119)
..|.||-.... .=||. +|..|+..-..|.+|...|..+
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGT 339 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEE
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCe
Confidence 48999987543 34788 9999999999999999998754
No 66
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.30 E-value=19 Score=21.57 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=7.0
Q ss_pred cccccCccccccc
Q psy8320 100 ICAMCGKKLLDVK 112 (119)
Q Consensus 100 iCamCGKki~Dt~ 112 (119)
.|+.|++.|.+..
T Consensus 37 ~C~~C~~~L~~~~ 49 (72)
T 1x4l_A 37 NCKKCSLSLVGRG 49 (72)
T ss_dssp BCSSSCCBCTTSC
T ss_pred EeccCCCcCCCCc
Confidence 4556666555443
No 67
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=43.25 E-value=6.1 Score=33.17 Aligned_cols=39 Identities=26% Similarity=0.687 Sum_probs=30.3
Q ss_pred Cccchhhhhhccc-----CCCccCccccc-----ccccccccCcccccc
Q psy8320 73 FESCKICRQKVHQ-----VGSHYCQACAY-----KKGICAMCGKKLLDV 111 (119)
Q Consensus 73 ~~~C~iCK~~vhq-----~g~~YCq~CAY-----kkGiCamCGKki~Dt 111 (119)
...|.||-..... =||.+|..|.. ....|++|...+...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3589999775433 38899999986 468999999988753
No 68
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=43.05 E-value=4.6 Score=25.92 Aligned_cols=36 Identities=31% Similarity=0.744 Sum_probs=26.4
Q ss_pred cchhhhhhcc------cCCCccCcccccc----cccccccCccccc
Q psy8320 75 SCKICRQKVH------QVGSHYCQACAYK----KGICAMCGKKLLD 110 (119)
Q Consensus 75 ~C~iCK~~vh------q~g~~YCq~CAYk----kGiCamCGKki~D 110 (119)
.|.||...+. .=||.||..|... ...|.+|...+..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 24 RCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 7888876432 3488899999743 4689999998763
No 69
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=42.08 E-value=4.7 Score=28.58 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=28.2
Q ss_pred ccchhhhhhccc-----CCCccCccccccc-----ccccccCcccccc
Q psy8320 74 ESCKICRQKVHQ-----VGSHYCQACAYKK-----GICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vhq-----~g~~YCq~CAYkk-----GiCamCGKki~Dt 111 (119)
-.|.||...+.. =||.||..|...- ..|.+|...+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 479999875543 3888999997432 3799999988743
No 70
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=41.95 E-value=7.5 Score=24.85 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=16.3
Q ss_pred ccchhhhhhcccCCCccCcccc
Q psy8320 74 ESCKICRQKVHQVGSHYCQACA 95 (119)
Q Consensus 74 ~~C~iCK~~vhq~g~~YCq~CA 95 (119)
-+|..|+ +...|-.-||+.|-
T Consensus 12 WkC~~C~-k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECK-KFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSC-CEECSSCCBCTTTC
T ss_pred eeccccc-ccCCCccchhHHHH
Confidence 3899999 55556789999994
No 71
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=41.81 E-value=6.4 Score=28.79 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=27.1
Q ss_pred Cccchhhhhhcc-----cCCCccCcccccc----cc-cccccCcccc
Q psy8320 73 FESCKICRQKVH-----QVGSHYCQACAYK----KG-ICAMCGKKLL 109 (119)
Q Consensus 73 ~~~C~iCK~~vh-----q~g~~YCq~CAYk----kG-iCamCGKki~ 109 (119)
.-.|.||..-.. .-||.||..|-.. .+ .|++|+..+.
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 458999976443 3499999999642 23 3999999885
No 72
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=41.71 E-value=2.7 Score=25.57 Aligned_cols=38 Identities=26% Similarity=0.725 Sum_probs=26.5
Q ss_pred ccchhhhhhcc-------cCCCc-cCcccccccc----cccccCcccccc
Q psy8320 74 ESCKICRQKVH-------QVGSH-YCQACAYKKG----ICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vh-------q~g~~-YCq~CAYkkG----iCamCGKki~Dt 111 (119)
..|.||-.... .=||- +|..|+-+-- .|.+|-.+|.++
T Consensus 8 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp SBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 47888866321 22444 7999986544 899999998754
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=39.65 E-value=6.8 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.561 Sum_probs=24.0
Q ss_pred CCccCcccccc-----cccccccCccccccccccc
Q psy8320 87 GSHYCQACAYK-----KGICAMCGKKLLDVKNYKQ 116 (119)
Q Consensus 87 g~~YCq~CAYk-----kGiCamCGKki~Dt~~ykq 116 (119)
.|-+|..||+. ...|.||..+|.++.....
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG
T ss_pred cccHHHHHHHHHHhccCCCCcCcCCeeeeeEEecc
Confidence 57899999954 3699999999998876544
No 74
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.27 E-value=24 Score=21.34 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=7.2
Q ss_pred cccccCcccccc
Q psy8320 100 ICAMCGKKLLDV 111 (119)
Q Consensus 100 iCamCGKki~Dt 111 (119)
.|+.|++.|.+.
T Consensus 38 ~C~~C~~~L~~~ 49 (76)
T 2cu8_A 38 KCERCSKTLTPG 49 (76)
T ss_dssp BCSSSCCBCCTT
T ss_pred CCCCCCCccCCC
Confidence 466666666544
No 75
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=34.44 E-value=26 Score=20.52 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=7.5
Q ss_pred cccccCcccccc
Q psy8320 100 ICAMCGKKLLDV 111 (119)
Q Consensus 100 iCamCGKki~Dt 111 (119)
.|+.|++.+.+.
T Consensus 33 ~C~~C~~~L~~~ 44 (66)
T 1nyp_A 33 VCAKCEKPFLGH 44 (66)
T ss_dssp BCTTTCCBCSSS
T ss_pred EECCCCCCCCCC
Confidence 466677766553
No 76
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.48 E-value=4.3 Score=24.27 Aligned_cols=38 Identities=24% Similarity=0.652 Sum_probs=27.7
Q ss_pred ccchhhhhhc----ccCCCccCccccc----ccccccccCcccccc
Q psy8320 74 ESCKICRQKV----HQVGSHYCQACAY----KKGICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~v----hq~g~~YCq~CAY----kkGiCamCGKki~Dt 111 (119)
..|.||.... ..=||.||..|.. ....|.+|...+...
T Consensus 16 ~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4788887653 2347889999986 457899999887743
No 77
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=28.45 E-value=22 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=6.3
Q ss_pred cccccCcccccc
Q psy8320 100 ICAMCGKKLLDV 111 (119)
Q Consensus 100 iCamCGKki~Dt 111 (119)
.|+.|++.|.+.
T Consensus 34 ~C~~C~~~L~~~ 45 (65)
T 2iyb_E 34 LCSCCSKCLIGQ 45 (65)
T ss_dssp BCTTTCCBCTTS
T ss_pred ECCCCCCcCCCC
Confidence 455566555443
No 78
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.22 E-value=32 Score=20.33 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=6.6
Q ss_pred cccccCcccccc
Q psy8320 100 ICAMCGKKLLDV 111 (119)
Q Consensus 100 iCamCGKki~Dt 111 (119)
.|+.|++.|.+.
T Consensus 35 ~C~~C~~~L~~~ 46 (72)
T 1wyh_A 35 LCSGCEQPLGSR 46 (72)
T ss_dssp BCTTTCCBTTTS
T ss_pred eECCCCCcCCCC
Confidence 455666655543
No 79
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.44 E-value=17 Score=22.09 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=24.0
Q ss_pred cchhhhhhccc------CCCccCc-cccccc--ccccccCccc
Q psy8320 75 SCKICRQKVHQ------VGSHYCQ-ACAYKK--GICAMCGKKL 108 (119)
Q Consensus 75 ~C~iCK~~vhq------~g~~YCq-~CAYkk--GiCamCGKki 108 (119)
+|..|+..+.. +|.-||. .|-.+. -.|+.||..+
T Consensus 29 ~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 29 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 67777776543 3567999 687653 5899999654
No 80
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.28 E-value=27 Score=21.16 Aligned_cols=9 Identities=22% Similarity=0.774 Sum_probs=5.1
Q ss_pred cchhhhhhc
Q psy8320 75 SCKICRQKV 83 (119)
Q Consensus 75 ~C~iCK~~v 83 (119)
+|..|...+
T Consensus 37 ~C~~C~~~L 45 (76)
T 1x68_A 37 NCGKCSVSL 45 (76)
T ss_dssp BCTTTCCBC
T ss_pred ChhhCCCcC
Confidence 556665554
No 81
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.94 E-value=27 Score=20.70 Aligned_cols=35 Identities=23% Similarity=0.658 Sum_probs=18.1
Q ss_pred ccchhhhhhcccC-------CCccCcccccccccccccCccccccc
Q psy8320 74 ESCKICRQKVHQV-------GSHYCQACAYKKGICAMCGKKLLDVK 112 (119)
Q Consensus 74 ~~C~iCK~~vhq~-------g~~YCq~CAYkkGiCamCGKki~Dt~ 112 (119)
.+|..|...|... |..|=..|- .|+.|++.|.+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF----~C~~C~~~L~~~~ 47 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCF----ICHRCQQPIGTKS 47 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTT----CCSSSCCCCCSSS
T ss_pred CCCccCCCcccCCceEEEECcCeecccCC----cccccCCccCCCc
Confidence 4677777666531 112222221 5677777766553
No 82
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.32 E-value=23 Score=21.94 Aligned_cols=22 Identities=32% Similarity=0.791 Sum_probs=19.1
Q ss_pred cchhhhhhcccCCCccCcccccc
Q psy8320 75 SCKICRQKVHQVGSHYCQACAYK 97 (119)
Q Consensus 75 ~C~iCK~~vhq~g~~YCq~CAYk 97 (119)
.|..|...++. |+.+|..|-|+
T Consensus 16 iCpkC~a~~~~-gaw~CrKCG~~ 37 (51)
T 3j21_g 16 VCLRCGATNPW-GAKKCRKCGYK 37 (51)
T ss_dssp ECTTTCCEECT-TCSSCSSSSSC
T ss_pred cCCCCCCcCCC-CceecCCCCCc
Confidence 89999999887 89999988776
No 83
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=63 Score=19.99 Aligned_cols=9 Identities=22% Similarity=0.922 Sum_probs=4.8
Q ss_pred cchhhhhhc
Q psy8320 75 SCKICRQKV 83 (119)
Q Consensus 75 ~C~iCK~~v 83 (119)
+|..|+..+
T Consensus 44 ~C~~C~~~L 52 (82)
T 2co8_A 44 RCHTCEATL 52 (82)
T ss_dssp BCSSSCCBC
T ss_pred EEcCCCCCc
Confidence 555555544
No 84
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.25 E-value=52 Score=19.63 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=8.1
Q ss_pred cccccCccccccc
Q psy8320 100 ICAMCGKKLLDVK 112 (119)
Q Consensus 100 iCamCGKki~Dt~ 112 (119)
.|+.|++.+.+..
T Consensus 41 ~C~~C~~~L~~~~ 53 (77)
T 1g47_A 41 VCAQCFQQFPEGL 53 (77)
T ss_dssp CCTTTCCCCGGGC
T ss_pred eECCCCCCCCCCC
Confidence 4666777766543
No 85
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=25.12 E-value=21 Score=27.84 Aligned_cols=32 Identities=25% Similarity=0.747 Sum_probs=23.2
Q ss_pred hccCCCcccCccchhhhhhcc-----cCCCccCcccc
Q psy8320 64 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQACA 95 (119)
Q Consensus 64 ~r~~Py~~~~~~C~iCK~~vh-----q~g~~YCq~CA 95 (119)
.++.-|+.....|..|.+.|. +-+.+||..|-
T Consensus 233 ~~~~VygR~G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 233 NELQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred ceEEEccCCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 466788776788999988764 23567888873
No 86
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.96 E-value=48 Score=19.60 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=6.1
Q ss_pred cccccCccccc
Q psy8320 100 ICAMCGKKLLD 110 (119)
Q Consensus 100 iCamCGKki~D 110 (119)
.|+.|++.|.+
T Consensus 35 ~C~~C~~~L~~ 45 (72)
T 1x61_A 35 VCSTCRAQLRG 45 (72)
T ss_dssp BCSSSCCBCTT
T ss_pred cccccCCcCCc
Confidence 45566666543
No 87
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=24.66 E-value=6.7 Score=23.83 Aligned_cols=38 Identities=29% Similarity=0.701 Sum_probs=24.2
Q ss_pred ccchhhhhhcc-------cCCCc-cCccccccc----ccccccCcccccc
Q psy8320 74 ESCKICRQKVH-------QVGSH-YCQACAYKK----GICAMCGKKLLDV 111 (119)
Q Consensus 74 ~~C~iCK~~vh-------q~g~~-YCq~CAYkk----GiCamCGKki~Dt 111 (119)
..|.||-.... .=||- +|..|+-+- ..|.+|-..|.++
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 46777754322 22444 588888543 3599999998754
No 88
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=24.61 E-value=13 Score=24.07 Aligned_cols=36 Identities=25% Similarity=0.647 Sum_probs=26.2
Q ss_pred ccchhhhhhcc------cCCCccCcccccc-----cccccccCcccc
Q psy8320 74 ESCKICRQKVH------QVGSHYCQACAYK-----KGICAMCGKKLL 109 (119)
Q Consensus 74 ~~C~iCK~~vh------q~g~~YCq~CAYk-----kGiCamCGKki~ 109 (119)
-.|.||...+. .=||.||..|... ...|.+|...+.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 37888876432 2378899999753 258999999874
No 89
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.59 E-value=23 Score=27.56 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=23.7
Q ss_pred hccCCCcccCccchhhhhhcc-----cCCCccCcccc
Q psy8320 64 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQACA 95 (119)
Q Consensus 64 ~r~~Py~~~~~~C~iCK~~vh-----q~g~~YCq~CA 95 (119)
..+.-|+.....|..|.+.|. +-..+||..|-
T Consensus 226 ~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 226 TRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred ceEEEcccCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 566788877789999988764 23567888884
No 90
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=24.29 E-value=17 Score=28.47 Aligned_cols=31 Identities=29% Similarity=0.792 Sum_probs=21.9
Q ss_pred hccCCCcccCccchhhhhhccc-----CCCccCccc
Q psy8320 64 ARFNPYTQKFESCKICRQKVHQ-----VGSHYCQAC 94 (119)
Q Consensus 64 ~r~~Py~~~~~~C~iCK~~vhq-----~g~~YCq~C 94 (119)
..+.-|+.....|..|.+.|.. -..+||..|
T Consensus 236 ~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~C 271 (273)
T 3u6p_A 236 HHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRC 271 (273)
T ss_dssp -CCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred ceEEEeCCCcCCCCCCCCeEEEEEECCCCeEECCCC
Confidence 4566777667799999887642 346788887
No 91
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.33 E-value=23 Score=27.53 Aligned_cols=31 Identities=29% Similarity=0.799 Sum_probs=22.7
Q ss_pred hccCCCcccCccchhhhhhcc-----cCCCccCccc
Q psy8320 64 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQAC 94 (119)
Q Consensus 64 ~r~~Py~~~~~~C~iCK~~vh-----q~g~~YCq~C 94 (119)
..+.-|+.....|..|.+.|. +-..+||..|
T Consensus 231 ~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~C 266 (268)
T 1k82_A 231 QELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQC 266 (268)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred ceEEEcccCCCCCCCCCCEeeEEEECCCceEECCCC
Confidence 466778776788999988764 2356788887
No 92
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=23.15 E-value=20 Score=24.63 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=9.2
Q ss_pred ccccccCcccc
Q psy8320 99 GICAMCGKKLL 109 (119)
Q Consensus 99 GiCamCGKki~ 109 (119)
|+|..||..|-
T Consensus 82 g~C~~Cg~~I~ 92 (112)
T 2kq9_A 82 GTCVKCGKRIS 92 (112)
T ss_dssp SEETTTTEECC
T ss_pred CeeCCCCCccc
Confidence 68999998874
No 93
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=23.14 E-value=23 Score=20.26 Aligned_cols=8 Identities=50% Similarity=1.207 Sum_probs=7.0
Q ss_pred hccCCCcc
Q psy8320 64 ARFNPYTQ 71 (119)
Q Consensus 64 ~r~~Py~~ 71 (119)
+||.||++
T Consensus 19 nrfepY~N 26 (30)
T 2ot8_C 19 NRFEPYAN 26 (30)
T ss_pred cccccccC
Confidence 79999986
No 94
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.83 E-value=31 Score=18.57 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=9.6
Q ss_pred ccccccCccccc
Q psy8320 99 GICAMCGKKLLD 110 (119)
Q Consensus 99 GiCamCGKki~D 110 (119)
..|+.|||.+-.
T Consensus 4 ~~C~~C~k~Vy~ 15 (31)
T 1zfo_A 4 PNCARCGKIVYP 15 (31)
T ss_dssp CBCSSSCSBCCG
T ss_pred CcCCccCCEEec
Confidence 479999998854
No 95
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.28 E-value=25 Score=15.91 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=8.1
Q ss_pred cccccCccccccc
Q psy8320 100 ICAMCGKKLLDVK 112 (119)
Q Consensus 100 iCamCGKki~Dt~ 112 (119)
.|..||+....-+
T Consensus 4 ~C~~C~k~f~~~~ 16 (30)
T 1klr_A 4 QCQYCEFRSADSS 16 (30)
T ss_dssp CCSSSSCCCSCSH
T ss_pred cCCCCCCccCCHH
Confidence 4777777665433
No 96
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=22.02 E-value=20 Score=27.77 Aligned_cols=30 Identities=23% Similarity=0.641 Sum_probs=20.8
Q ss_pred ccCCCcccCccchhhhhhcc-----cCCCccCccc
Q psy8320 65 RFNPYTQKFESCKICRQKVH-----QVGSHYCQAC 94 (119)
Q Consensus 65 r~~Py~~~~~~C~iCK~~vh-----q~g~~YCq~C 94 (119)
.+.-|+.....|..|.+.|. +-+.+||..|
T Consensus 226 ~l~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~C 260 (262)
T 1k3x_A 226 RFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 260 (262)
T ss_dssp CCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred eEEEcCCCcCCCCCCCCEeEEEEECCCCeEECCCC
Confidence 44577766778999987663 2345788887
No 97
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.89 E-value=26 Score=21.89 Aligned_cols=24 Identities=13% Similarity=0.589 Sum_probs=17.8
Q ss_pred CCCccCccccc----ccccccccCcccc
Q psy8320 86 VGSHYCQACAY----KKGICAMCGKKLL 109 (119)
Q Consensus 86 ~g~~YCq~CAY----kkGiCamCGKki~ 109 (119)
=||.|+..|.. ....|.+|-..+.
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 36778888864 4578999988764
No 98
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=21.77 E-value=27 Score=26.24 Aligned_cols=14 Identities=29% Similarity=0.781 Sum_probs=11.1
Q ss_pred cccccccccCcccc
Q psy8320 96 YKKGICAMCGKKLL 109 (119)
Q Consensus 96 YkkGiCamCGKki~ 109 (119)
.+.|.|++||..+.
T Consensus 18 ~Q~g~C~IC~~~l~ 31 (157)
T 1e7l_A 18 AQNGKCLICQRELN 31 (157)
T ss_dssp HTTTBCTTTCCBCC
T ss_pred HhCCcCcccCCccc
Confidence 45689999999864
No 99
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.29 E-value=19 Score=16.27 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=6.5
Q ss_pred cccccCccccc
Q psy8320 100 ICAMCGKKLLD 110 (119)
Q Consensus 100 iCamCGKki~D 110 (119)
.|..||+....
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 46667765544
No 100
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.54 E-value=31 Score=15.38 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=7.4
Q ss_pred cccccCcccccc
Q psy8320 100 ICAMCGKKLLDV 111 (119)
Q Consensus 100 iCamCGKki~Dt 111 (119)
.|..||+.....
T Consensus 4 ~C~~C~~~f~~~ 15 (29)
T 2m0e_A 4 KCPHCDKKFNQV 15 (29)
T ss_dssp CCSSCCCCCCTT
T ss_pred cCCCCCcccCCH
Confidence 467777765543
No 101
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.36 E-value=69 Score=20.02 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=6.0
Q ss_pred cccccCcccccc
Q psy8320 100 ICAMCGKKLLDV 111 (119)
Q Consensus 100 iCamCGKki~Dt 111 (119)
.|+.|++.|.+.
T Consensus 44 ~C~~C~~~L~~~ 55 (91)
T 2d8y_A 44 RCSYCNNKLSLG 55 (91)
T ss_dssp BCTTTCCBCCTT
T ss_pred eeCCCCCCCCCC
Confidence 355555555443
No 102
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.00 E-value=69 Score=19.99 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=23.3
Q ss_pred cCccchhhhhhccc-----CCCccCcccccccccccccCccccccccc
Q psy8320 72 KFESCKICRQKVHQ-----VGSHYCQACAYKKGICAMCGKKLLDVKNY 114 (119)
Q Consensus 72 ~~~~C~iCK~~vhq-----~g~~YCq~CAYkkGiCamCGKki~Dt~~y 114 (119)
....|..|...|.. .|..|=..|- .|+.|++.|.+...+
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF----~C~~C~~~L~~~~f~ 67 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEF----NCAHCKNTMAYIGFV 67 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTC----BCSSSCCBCSSSCBE
T ss_pred CCCCCccCCCEecceEEEECCccccccCC----ccCCCCCCCCCCEeE
Confidence 35689899887742 1222222222 678899888865543
No 103
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=20.58 E-value=32 Score=22.23 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=17.9
Q ss_pred CCCccCccccc---------ccccccccCcccc
Q psy8320 86 VGSHYCQACAY---------KKGICAMCGKKLL 109 (119)
Q Consensus 86 ~g~~YCq~CAY---------kkGiCamCGKki~ 109 (119)
=||.||..|.. ....|.+|-..+.
T Consensus 61 C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 61 CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 36789999953 2568999987664
No 104
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=25.68 E-value=22 Score=16.30 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=6.5
Q ss_pred cccccCccccc
Q psy8320 100 ICAMCGKKLLD 110 (119)
Q Consensus 100 iCamCGKki~D 110 (119)
.|..||+....
T Consensus 5 ~C~~C~k~f~~ 15 (30)
T 2lvr_A 5 VCIHCQRQFAD 15 (30)
Confidence 46666666544
No 105
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.20 E-value=28 Score=15.94 Aligned_cols=13 Identities=15% Similarity=0.695 Sum_probs=7.7
Q ss_pred cccccCccccccc
Q psy8320 100 ICAMCGKKLLDVK 112 (119)
Q Consensus 100 iCamCGKki~Dt~ 112 (119)
.|..||+.....+
T Consensus 4 ~C~~C~k~f~~~~ 16 (30)
T 1paa_A 4 ACGLCNRAFTRRD 16 (30)
T ss_dssp BCTTTCCBCSSSH
T ss_pred CCcccCcccCChH
Confidence 4667777655433
No 106
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.03 E-value=28 Score=24.84 Aligned_cols=36 Identities=22% Similarity=0.719 Sum_probs=26.9
Q ss_pred Cccchhhhhhcc--cCCCccCcccccccccccccCccccc
Q psy8320 73 FESCKICRQKVH--QVGSHYCQACAYKKGICAMCGKKLLD 110 (119)
Q Consensus 73 ~~~C~iCK~~vh--q~g~~YCq~CAYkkGiCamCGKki~D 110 (119)
...|.+|-+... -+-++-|..|-+. +|+-||..+.+
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~--VC~~C~~~~~~ 92 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKN--VCTKCGVETSN 92 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCE--EETTSEEECCC
T ss_pred CccccccCCCcccccCCCCCCCCCCcc--cccccCCccCC
Confidence 468999998772 2235889888765 99999987754
No 107
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.24 E-value=22 Score=16.34 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=7.0
Q ss_pred cccccCcccccc
Q psy8320 100 ICAMCGKKLLDV 111 (119)
Q Consensus 100 iCamCGKki~Dt 111 (119)
.|..||+....-
T Consensus 4 ~C~~C~k~f~~~ 15 (29)
T 2lvt_A 4 QCVMCGKAFTQA 15 (29)
Confidence 466677665443
Done!