RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8320
         (119 letters)



>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
           {Escherichia coli [TaxId: 562]}
          Length = 144

 Score = 29.8 bits (67), Expect = 0.045
 Identities = 7/50 (14%), Positives = 17/50 (34%)

Query: 56  NKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCG 105
             A+ A+     PY++      +  +        Y +  A+   +  + G
Sbjct: 43  QAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQG 92


>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli
          [TaxId: 562]}
          Length = 40

 Score = 23.1 bits (50), Expect = 3.3
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 65 RFNPYTQKFESCKIC-----RQKVHQVGSHYCQAC 94
          RF  + +  E C+ C     +  +     ++C  C
Sbjct: 4  RFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 38


>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg)
          {Thermus thermophilus [TaxId: 274]}
          Length = 56

 Score = 22.5 bits (48), Expect = 8.0
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)

Query: 65 RFNPYTQKFESCKICRQKVHQV-----GSHYCQAC 94
          R   Y ++   C  C + V +      G+H+C  C
Sbjct: 17 RHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTC 51


>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg)
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 46

 Score = 22.0 bits (47), Expect = 8.4
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 65 RFNPYTQKFESCKICRQKVHQV-----GSHYCQAC 94
              Y ++   CK C   + +      G+HYC  C
Sbjct: 10 HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRC 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,741
Number of extensions: 20278
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 27
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)