Query psy8321
Match_columns 124
No_of_seqs 105 out of 523
Neff 6.4
Searched_HMMs 46136
Date Sat Aug 17 00:43:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3355|consensus 100.0 3.4E-50 7.4E-55 296.9 11.1 115 10-124 63-177 (177)
2 COG5054 ERV1 Mitochondrial sul 100.0 1.3E-43 2.9E-48 261.4 10.5 110 10-119 72-181 (181)
3 PF04777 Evr1_Alr: Erv1 / Alr 100.0 4.1E-36 9E-41 203.8 9.1 94 22-115 1-95 (95)
4 KOG1731|consensus 99.7 5.1E-18 1.1E-22 144.6 7.2 81 18-101 406-491 (606)
5 PHA03005 sulfhydryl oxidase; P 99.2 4.5E-11 9.7E-16 81.0 6.7 78 16-96 2-80 (96)
6 PF04805 Pox_E10: E10-like pro 95.9 0.026 5.6E-07 36.4 5.0 48 48-95 6-54 (70)
7 PF05214 Baculo_p33: Baculovir 62.2 6.8 0.00015 31.2 2.4 48 22-69 106-163 (250)
8 KOG3354|consensus 62.0 6.2 0.00013 29.9 2.0 34 82-115 64-100 (191)
9 PF14424 Toxin-deaminase: The 56.1 4.2 9.1E-05 29.2 0.3 46 25-75 78-123 (133)
10 PF11571 Med27: Mediator compl 53.5 25 0.00055 23.2 3.7 28 40-67 35-64 (90)
11 PF12342 DUF3640: Protein of u 42.0 8.8 0.00019 20.1 0.1 11 15-25 12-22 (26)
12 PF01265 Cyto_heme_lyase: Cyto 35.9 46 0.001 26.7 3.3 41 57-100 111-153 (259)
13 KOG4167|consensus 34.6 21 0.00045 32.9 1.3 20 56-75 791-810 (907)
14 PF09412 XendoU: Endoribonucle 32.6 2.6E+02 0.0056 22.3 7.5 72 16-91 53-131 (265)
15 PF11417 Inhibitor_G39P: Loade 30.4 1.1E+02 0.0024 19.6 3.8 53 26-79 8-66 (71)
16 PF13913 zf-C2HC_2: zinc-finge 26.7 7.7 0.00017 19.8 -1.7 13 57-69 2-14 (25)
17 TIGR01609 PF_unchar_267 Plasmo 25.3 1E+02 0.0022 22.7 3.4 22 86-107 95-116 (146)
18 KOG3408|consensus 24.8 24 0.00053 25.3 0.0 14 56-70 57-70 (129)
19 TIGR02701 shell_carb_anhy carb 24.1 66 0.0014 27.7 2.4 90 24-120 78-178 (450)
20 PHA00616 hypothetical protein 23.8 46 0.001 19.5 1.1 13 58-70 2-14 (44)
21 PF05734 DUF832: Herpesvirus p 23.3 3.7E+02 0.008 21.1 7.0 62 49-110 110-180 (228)
22 PF14149 YhfH: YhfH-like prote 22.8 81 0.0018 17.9 1.9 28 46-74 3-30 (37)
23 PF02285 COX8: Cytochrome oxid 22.7 40 0.00088 19.8 0.7 11 20-30 27-37 (44)
24 COG5061 ERO1 Oxidoreductin, en 22.4 1.1E+02 0.0024 25.9 3.4 55 10-64 252-318 (425)
25 PF09779 Ima1_N: Ima1 N-termin 20.9 1.9E+02 0.0042 20.4 4.0 41 24-64 83-128 (131)
26 cd00930 Cyt_c_Oxidase_VIII Cyt 20.0 60 0.0013 19.0 1.0 11 20-30 27-37 (43)
No 1
>KOG3355|consensus
Probab=100.00 E-value=3.4e-50 Score=296.91 Aligned_cols=115 Identities=60% Similarity=1.182 Sum_probs=113.1
Q ss_pred CCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy8321 10 RPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLC 89 (124)
Q Consensus 10 ~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~ 89 (124)
...||+++++||||+|+|||||||+||+.||.+||..|+.||.+|+.+|||.+|++||+++++++||+|+||+++.+|+|
T Consensus 63 ~~~~~~~~eeLGRstWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C 142 (177)
T KOG3355|consen 63 RKGDPPDKEELGRSTWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLC 142 (177)
T ss_pred hcCCCchHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCChhcHHHhhccCCCCCCCCC
Q psy8321 90 WVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCDF 124 (124)
Q Consensus 90 ~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~~~~~~ 124 (124)
.+||.||++||||.|||+.++|||++||+||+||-
T Consensus 143 ~vHN~VNekLgKp~fdC~~v~erw~~g~~~~~~d~ 177 (177)
T KOG3355|consen 143 HVHNKVNEKLGKPKFDCRTVDERWRDGWKDGSCDR 177 (177)
T ss_pred HHHHHHHHHcCCCCCchhHHHHHHhchhhhcCCCC
Confidence 99999999999999999999999999999999983
No 2
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=261.42 Aligned_cols=110 Identities=45% Similarity=0.854 Sum_probs=107.4
Q ss_pred CCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy8321 10 RPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLC 89 (124)
Q Consensus 10 ~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~ 89 (124)
+...|++++++|||+|+|||||||+||..||.+||..++.||.+|+.+|||.+|++||++++..+||+|+||+++..|+|
T Consensus 72 ~k~d~~~~~elGRssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~C 151 (181)
T COG5054 72 TKHDNPDVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWAC 151 (181)
T ss_pred cccCchHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCChhcHHHhhccCCCC
Q psy8321 90 WVHNTVNRKLGKPIFDCALVDERWKDGWED 119 (124)
Q Consensus 90 ~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~ 119 (124)
++||.||+|||||.|||+.+.|||.+||++
T Consensus 152 evHN~VNekL~Kp~~dC~~~~e~~~~G~~~ 181 (181)
T COG5054 152 EVHNKVNEKLGKPKFDCDTWNERYDCGCDT 181 (181)
T ss_pred HHHHHHHHHhCCCCcccchhHHHhhccCCC
Confidence 999999999999999999999999999975
No 3
>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....
Probab=100.00 E-value=4.1e-36 Score=203.85 Aligned_cols=94 Identities=44% Similarity=0.929 Sum_probs=90.3
Q ss_pred hhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhhhCC
Q psy8321 22 YQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGK 101 (124)
Q Consensus 22 ~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~rLgK 101 (124)
+|+|+|||++|++||+.|+..+++.+..|+.+|..+|||.+|+.||.++++++|++|+||+++++|||++||.||+||||
T Consensus 1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k 80 (95)
T PF04777_consen 1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK 80 (95)
T ss_dssp HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhcHHHhhcc
Q psy8321 102 PIF-DCALVDERWKD 115 (124)
Q Consensus 102 p~~-~c~~~~~rw~~ 115 (124)
|++ ++..+.++|.+
T Consensus 81 ~~~~~~~~~~~~~~~ 95 (95)
T PF04777_consen 81 PIFCDDPKFKEQWPT 95 (95)
T ss_dssp STTTSGTTHHHHHT-
T ss_pred CCCCCcHHHHhHcCC
Confidence 996 88899999964
No 4
>KOG1731|consensus
Probab=99.73 E-value=5.1e-18 Score=144.61 Aligned_cols=81 Identities=21% Similarity=0.427 Sum_probs=65.7
Q ss_pred cccchhhhHHHHHHhhcCCCCCCHHHH----HHHHHHHHHhhhhcCChhHHHHHHHHHhhCC-CCCCCHHHHHHHHHHHH
Q psy8321 18 DLLGYQTWGLLHTMAAYYPDHPTPHQQ----RDMYNFFTLLAQFYPCATCARDFANLLRVRP-PVTTSRKDLSQWLCWVH 92 (124)
Q Consensus 18 ~~lG~a~W~llHtlAa~~p~~pt~~~~----~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p-~~v~sr~~l~~Wl~~~H 92 (124)
..+-+|+|+|||++|++....+...+- ..+..|++ .||.|.+|+.||.+|..+.. ..|.++++.++|||++|
T Consensus 406 RGftCgLWTLFH~lTV~Aa~~~~~~~~~~~l~~l~~~vk---~FFgC~dC~~HF~~Ma~~~~~~~V~~ped~vLWLW~aH 482 (606)
T KOG1731|consen 406 RGFTCGLWTLFHALTVEAAKQEVHFAFTPILDVLHGFVK---NFFGCTDCREHFQKMATRRKLHRVRRPEDVVLWLWSAH 482 (606)
T ss_pred CCcchHHHHHHHHhhhhhcccccccchhccchhhHHHHH---HccCchHHHHHHHHHHHhhcccccCChhhhhhHHHHHh
Confidence 456679999999999997665544332 23333665 57999999999999998754 78999999999999999
Q ss_pred HHHHhhhCC
Q psy8321 93 NTVNRKLGK 101 (124)
Q Consensus 93 N~VN~rLgK 101 (124)
|+||+||.+
T Consensus 483 N~VN~RLaG 491 (606)
T KOG1731|consen 483 NEVNARLAG 491 (606)
T ss_pred hHHHHHhcc
Confidence 999999964
No 5
>PHA03005 sulfhydryl oxidase; Provisional
Probab=99.21 E-value=4.5e-11 Score=80.96 Aligned_cols=78 Identities=9% Similarity=0.212 Sum_probs=62.0
Q ss_pred CccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHH-HHHHH
Q psy8321 16 DKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLC-WVHNT 94 (124)
Q Consensus 16 ~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~ 94 (124)
+|..||||.|+++|.++.+|+.+++ .+..+..+.++...+||..|+.|..+.+.++...-++.-..+.++. .++|.
T Consensus 2 dPk~WGra~W~vIFivi~k~~~~~~---iE~cK~~lytI~~tLPC~~Cr~HA~~ai~knnimSs~diNyi~~FfI~l~Nn 78 (96)
T PHA03005 2 NPKYWGRAIWTVIFIVISKAKLDGN---IEACKRKLYTICSTLPCPACRRHAKEAIEKNNIMSSNDLNYIYFFFISLFNN 78 (96)
T ss_pred CcchhhhhHHHHHHHHHHhccCCCc---HHHHHHHHHHhhhcCCCHHHHHHHHHHHhhcCccccCCccchhHHHHHHHHH
Confidence 6789999999999999999998874 4566677788889999999999999999988765454445555544 77775
Q ss_pred HH
Q psy8321 95 VN 96 (124)
Q Consensus 95 VN 96 (124)
.-
T Consensus 79 la 80 (96)
T PHA03005 79 LA 80 (96)
T ss_pred hc
Confidence 43
No 6
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=95.90 E-value=0.026 Score=36.36 Aligned_cols=48 Identities=8% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHH-HHHHHH
Q psy8321 48 YNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLC-WVHNTV 95 (124)
Q Consensus 48 ~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~V 95 (124)
+.=+..+...+||..||.|..+.+.++...-++--..+.++. .++|..
T Consensus 6 Kr~ly~I~~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNnl 54 (70)
T PF04805_consen 6 KRKLYTICSTLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNNL 54 (70)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHHh
Confidence 334455567899999999999999988765444444454444 777653
No 7
>PF05214 Baculo_p33: Baculovirus P33; InterPro: IPR007879 This family consists of a series of baculoviral 33 kDa early protein homologues.; PDB: 3QZY_B 3P0K_A.
Probab=62.22 E-value=6.8 Score=31.19 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=30.1
Q ss_pred hhhhHHHHHHhhcCC------CCCC----HHHHHHHHHHHHHhhhhcCChhHHHHHHH
Q psy8321 22 YQTWGLLHTMAAYYP------DHPT----PHQQRDMYNFFTLLAQFYPCATCARDFAN 69 (124)
Q Consensus 22 ~a~W~llHtlAa~~p------~~pt----~~~~~~~~~fi~~f~~~~PC~~C~~hf~~ 69 (124)
+-.|=.+|.||--.. ++-+ ..+-+.++..+.++-..+-|+-||+|+..
T Consensus 106 ~tIWD~IH~l~li~DdmV~nR~~~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 163 (250)
T PF05214_consen 106 TTIWDSIHFLCLIIDDMVDNRHKLSYDFVSNQLKNMKWLFYNIFFKLFCPMCRDHYLT 163 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHT---SSS-HHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhHhheeCChHHhHHHee
Confidence 357999999985422 1112 12346777777777677889999999875
No 8
>KOG3354|consensus
Probab=62.02 E-value=6.2 Score=29.94 Aligned_cols=34 Identities=18% Similarity=0.517 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCC---CCChhcHHHhhcc
Q psy8321 82 KDLSQWLCWVHNTVNRKLGKP---IFDCALVDERWKD 115 (124)
Q Consensus 82 ~~l~~Wl~~~HN~VN~rLgKp---~~~c~~~~~rw~~ 115 (124)
++-.-||+++|+...++|.+- +..|+.+.++||+
T Consensus 64 ~DR~pWL~~i~~~~~~~l~~~q~vVlACSaLKk~YRd 100 (191)
T KOG3354|consen 64 DDRWPWLKKIAVELRKALASGQGVVLACSALKKKYRD 100 (191)
T ss_pred ccccHHHHHHHHHHHHHhhcCCeEEEEhHHHHHHHHH
Confidence 455789999999999998764 5899999999997
No 9
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=56.12 E-value=4.2 Score=29.15 Aligned_cols=46 Identities=22% Similarity=0.535 Sum_probs=31.5
Q ss_pred hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCC
Q psy8321 25 WGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRP 75 (124)
Q Consensus 25 W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p 75 (124)
=.+|..+|.++..++.... .=|..|.+.-||..|..=+.++.+++|
T Consensus 78 ~KiL~~ia~~l~~~~~~~~-----G~i~l~te~~pC~SC~~vi~qF~~~~p 123 (133)
T PF14424_consen 78 YKILEDIAKKLGDNPDPSG-----GTIDLFTELPPCESCSNVIEQFKKDFP 123 (133)
T ss_pred HHHHHHHHHHhccccccCC-----ceEEEEecCCcChhHHHHHHHHHHHCC
Confidence 3556666666555444321 224556678999999999999999998
No 10
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=53.48 E-value=25 Score=23.25 Aligned_cols=28 Identities=14% Similarity=0.536 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHhhhh--cCChhHHHHH
Q psy8321 40 TPHQQRDMYNFFTLLAQF--YPCATCARDF 67 (124)
Q Consensus 40 t~~~~~~~~~fi~~f~~~--~PC~~C~~hf 67 (124)
.+.....+..||.++..+ =||..|+++.
T Consensus 35 ~~~~l~~ll~~l~sY~~lfs~pC~~C~klL 64 (90)
T PF11571_consen 35 PEWDLRSLLDWLSSYRNLFSTPCKKCGKLL 64 (90)
T ss_pred CccHHHHHHHHHHHHhhhccchhhHHHhHh
Confidence 334566677777777654 5999999998
No 11
>PF12342 DUF3640: Protein of unknown function (DUF3640) ; InterPro: IPR022101 This entry defines the N-terminal domain of the polyprotein of GB virus C; its function is not known.
Probab=42.03 E-value=8.8 Score=20.13 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=9.1
Q ss_pred CCccccchhhh
Q psy8321 15 LDKDLLGYQTW 25 (124)
Q Consensus 15 ~~~~~lG~a~W 25 (124)
.++.+|||+.|
T Consensus 12 vdkdqwG~gv~ 22 (26)
T PF12342_consen 12 VDKDQWGPGVH 22 (26)
T ss_pred hcccccCCCcC
Confidence 57889999876
No 12
>PF01265 Cyto_heme_lyase: Cytochrome c/c1 heme lyase; InterPro: IPR000511 Cytochrome c haem-lyase (CCHL) (4.4.1.17 from EC) and cytochrome Cc1 haem-lyase (CC1HL) [] are mitochondrial enzymes that catalyse the covalent attachment of a haem group on two cysteine residues of cytochrome c and c1. These two enzymes are functionally and evolutionary related. There are two conserved regions, the first is located in the central section and the second in the C-terminal section. Both patterns contain conserved histidine, tryptophan and acidic residues which could be important for the interaction of the enzymes with the apoproteins and/or the haem group.; GO: 0004408 holocytochrome-c synthase activity, 0005739 mitochondrion
Probab=35.89 E-value=46 Score=26.66 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=25.3
Q ss_pred hcCChhHHHHHHHHH-hhCC-CCCCCHHHHHHHHHHHHHHHHhhhC
Q psy8321 57 FYPCATCARDFANLL-RVRP-PVTTSRKDLSQWLCWVHNTVNRKLG 100 (124)
Q Consensus 57 ~~PC~~C~~hf~~~~-~~~p-~~v~sr~~l~~Wl~~~HN~VN~rLg 100 (124)
.||=+. -|.+.+ .++- +.-....+-+.=+..+||.||++.=
T Consensus 111 ~YPS~q---qFynAm~RKg~~p~~d~~~~dm~~vV~IHN~vNE~aW 153 (259)
T PF01265_consen 111 VYPSPQ---QFYNAMKRKGWNPSDDIPEEDMETVVPIHNAVNERAW 153 (259)
T ss_pred ecCCHH---HHHHHHHccccCcCCCCCHHHHHHHHHHhhhhhHHHH
Confidence 466543 444444 4432 2234457777888899999999853
No 13
>KOG4167|consensus
Probab=34.57 E-value=21 Score=32.85 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=16.2
Q ss_pred hhcCChhHHHHHHHHHhhCC
Q psy8321 56 QFYPCATCARDFANLLRVRP 75 (124)
Q Consensus 56 ~~~PC~~C~~hf~~~~~~~p 75 (124)
-+|||.+|.+.|.++-..|.
T Consensus 791 giFpCreC~kvF~KiKSrNA 810 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNA 810 (907)
T ss_pred ceeehHHHHHHHHHHhhhhH
Confidence 37999999999999755543
No 14
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=32.61 E-value=2.6e+02 Score=22.33 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=47.1
Q ss_pred Cccccc-hhhhHHHHHHhhcC------CCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy8321 16 DKDLLG-YQTWGLLHTMAAYY------PDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWL 88 (124)
Q Consensus 16 ~~~~lG-~a~W~llHtlAa~~------p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl 88 (124)
+.+.+. ..+...|=.+-.+| +|.-|++++++...||..+... ..=+...+++.+-.....+..++..+|
T Consensus 53 ~~~~~~~~pTy~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T----~vmk~~~~fL~~k~~~~~~~~~Fk~~L 128 (265)
T PF09412_consen 53 NESLLKSKPTYAAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMET----KVMKLAHQFLVSKGLAPSDEAEFKKQL 128 (265)
T ss_dssp -HHHHTTTSTHHHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTS----HHHHHHHHHHHHTTSS-SSHHHHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 556676 67777776666665 4556888999999999988654 333445566665555668888888887
Q ss_pred HHH
Q psy8321 89 CWV 91 (124)
Q Consensus 89 ~~~ 91 (124)
.++
T Consensus 129 ~~i 131 (265)
T PF09412_consen 129 KNI 131 (265)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 15
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=30.39 E-value=1.1e+02 Score=19.55 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=32.4
Q ss_pred HHHHHHhhcCC---CC-CCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhh--CCCCCC
Q psy8321 26 GLLHTMAAYYP---DH-PTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRV--RPPVTT 79 (124)
Q Consensus 26 ~llHtlAa~~p---~~-pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~--~p~~v~ 79 (124)
.+|=++++.|| .+ ...+.+..+..|...| .-+|-+.=...+.++++. +||.+.
T Consensus 8 ~ll~~I~~aYP~~~~~f~~~~~k~~v~~W~~~L-~d~~ye~v~~al~~~i~~~kfPPsia 66 (71)
T PF11417_consen 8 KLLKLIKAAYPQWAGNFKPTDSKETVDLWYDML-KDYDYEIVMKALKKHIATNKFPPSIA 66 (71)
T ss_dssp HHHHHHHHHST---TT---STHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHH-SS---GG
T ss_pred HHHHHHHHHCCcchhccchhhHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCcCHH
Confidence 46778888999 22 2223356677777766 557788888888888875 556553
No 16
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=26.70 E-value=7.7 Score=19.77 Aligned_cols=13 Identities=38% Similarity=1.094 Sum_probs=10.4
Q ss_pred hcCChhHHHHHHH
Q psy8321 57 FYPCATCARDFAN 69 (124)
Q Consensus 57 ~~PC~~C~~hf~~ 69 (124)
+.||..|++.|..
T Consensus 2 l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 2 LVPCPICGRKFNP 14 (25)
T ss_pred CCcCCCCCCEECH
Confidence 5789999988864
No 17
>TIGR01609 PF_unchar_267 Plasmodium falciparum uncharacterized protein TIGR01609. This model represents a family of at least four proteins in Plasmodium falciparum. An interesting feature is five perfectly conserved Trp residues.
Probab=25.34 E-value=1e+02 Score=22.65 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhCCCCCChh
Q psy8321 86 QWLCWVHNTVNRKLGKPIFDCA 107 (124)
Q Consensus 86 ~Wl~~~HN~VN~rLgKp~~~c~ 107 (124)
.+|-.+|+.+|+.|.-|.++..
T Consensus 95 KYLe~Vh~~IN~~Lnd~~~sl~ 116 (146)
T TIGR01609 95 KYLRRVHGHINSDLNDPSLTLV 116 (146)
T ss_pred HHHHHHHHHHHHHhcCCCCCHH
Confidence 5678999999999999988875
No 18
>KOG3408|consensus
Probab=24.84 E-value=24 Score=25.30 Aligned_cols=14 Identities=57% Similarity=1.215 Sum_probs=11.1
Q ss_pred hhcCChhHHHHHHHH
Q psy8321 56 QFYPCATCARDFANL 70 (124)
Q Consensus 56 ~~~PC~~C~~hf~~~ 70 (124)
+|| |-+|+++|..-
T Consensus 57 qfy-Ci~CaRyFi~~ 70 (129)
T KOG3408|consen 57 QFY-CIECARYFIDA 70 (129)
T ss_pred eee-hhhhhhhhcch
Confidence 455 99999999864
No 19
>TIGR02701 shell_carb_anhy carboxysome shell carbonic anhydrase. This model describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and for other carboxysome shell proteins.
Probab=24.08 E-value=66 Score=27.68 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=59.5
Q ss_pred hhHHHHHH---hhcC-CCCCCHHH-HHHHHHHHHHhh----hhcCChhHHH-HHHHHHhhCCC-CCCCHHHHHHHHHHHH
Q psy8321 24 TWGLLHTM---AAYY-PDHPTPHQ-QRDMYNFFTLLA----QFYPCATCAR-DFANLLRVRPP-VTTSRKDLSQWLCWVH 92 (124)
Q Consensus 24 ~W~llHtl---Aa~~-p~~pt~~~-~~~~~~fi~~f~----~~~PC~~C~~-hf~~~~~~~p~-~v~sr~~l~~Wl~~~H 92 (124)
.|.+|.++ +.++ .+.|.... .+.+..|+..-. ..-||.+-|- |...|+.+.|. .|..|++-..-|..+.
T Consensus 78 a~cvf~~~~~~s~~f~~~dpl~g~~~~~~~~fl~~CGfH~vdIsPCaDGRL~~~i~yvLRlP~~~Vr~rrs~AGAmFDve 157 (450)
T TIGR02701 78 GYCVFQSFTAMSEQFSRKDPLEGQRSAEAISFLLDCGFHAVDISPCADGRLKGLLPYILRLPLDAVRYRKAYAGAMFDVE 157 (450)
T ss_pred HHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHhcCcceeccccCCCccccccchhheecCchhhcchhhccceeechh
Confidence 45555544 4444 33454422 234556665433 3568888874 47778888885 5777999999999999
Q ss_pred HHHHhhhCCCCCChhcHHHhhccCCCCC
Q psy8321 93 NTVNRKLGKPIFDCALVDERWKDGWEDG 120 (124)
Q Consensus 93 N~VN~rLgKp~~~c~~~~~rw~~~~~~~ 120 (124)
|.||.+.. ...+|||.|.+..
T Consensus 158 ~~V~~W~~-------~E~~R~Reg~Pn~ 178 (450)
T TIGR02701 158 ADVARWIK-------TELRRYREGVPNS 178 (450)
T ss_pred hhhhhhhH-------HHHHHhhcCCCCC
Confidence 99999863 3457888877644
No 20
>PHA00616 hypothetical protein
Probab=23.79 E-value=46 Score=19.52 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=10.9
Q ss_pred cCChhHHHHHHHH
Q psy8321 58 YPCATCARDFANL 70 (124)
Q Consensus 58 ~PC~~C~~hf~~~ 70 (124)
|.|..|+.-|.+.
T Consensus 2 YqC~~CG~~F~~~ 14 (44)
T PHA00616 2 YQCLRCGGIFRKK 14 (44)
T ss_pred CccchhhHHHhhH
Confidence 6799999998764
No 21
>PF05734 DUF832: Herpesvirus protein of unknown function (DUF832); InterPro: IPR008550 This entry contains BRRF2 from Epstein-Barr virus. This protein family is restricted to the gammaherpesvirus's; it's function is not known. The protein is phosphorylated and is associated with the viral tegument [].
Probab=23.31 E-value=3.7e+02 Score=21.09 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=38.5
Q ss_pred HHHHHhhhhcCChhHHHHHHHHHhh----CCCCCCCHHHH---HHHHHHHHHHH--HhhhCCCCCChhcHH
Q psy8321 49 NFFTLLAQFYPCATCARDFANLLRV----RPPVTTSRKDL---SQWLCWVHNTV--NRKLGKPIFDCALVD 110 (124)
Q Consensus 49 ~fi~~f~~~~PC~~C~~hf~~~~~~----~p~~v~sr~~l---~~Wl~~~HN~V--N~rLgKp~~~c~~~~ 110 (124)
.+...+-.-..|.+|-.--....+. -||.+....+. ..||..+||.+ ......+.++-..+.
T Consensus 110 rL~llle~~CGC~~C~~~~~~L~~~~~~~rpPkl~PHt~~c~a~~~L~~l~n~avl~~~~~vs~~~l~~L~ 180 (228)
T PF05734_consen 110 RLALLLEDSCGCPECMRTVKGLTKIKGLFRPPKLNPHTKHCYAENFLTSLYNQAVLCNSVSVSEFDLRDLV 180 (228)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhhcccCCCCCCCcHhHhHHHHHHHHHHHHHHhcCCCCcchhhHHHHc
Confidence 4444445689999998776654432 35555443333 46899999887 444556667666543
No 22
>PF14149 YhfH: YhfH-like protein
Probab=22.77 E-value=81 Score=17.88 Aligned_cols=28 Identities=18% Similarity=0.508 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhhcCChhHHHHHHHHHhhC
Q psy8321 46 DMYNFFTLLAQFYPCATCARDFANLLRVR 74 (124)
Q Consensus 46 ~~~~fi~~f~~~~PC~~C~~hf~~~~~~~ 74 (124)
.+..|+++++.- -|.+|+++..+....+
T Consensus 3 ~~~eFfrnLp~K-~C~~CG~~i~EQ~E~Y 30 (37)
T PF14149_consen 3 NIVEFFRNLPPK-KCTECGKEIEEQAECY 30 (37)
T ss_pred cHHHHHHhCCCc-ccHHHHHHHHHHHHHH
Confidence 356788887642 2999999988876654
No 23
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=22.73 E-value=40 Score=19.82 Aligned_cols=11 Identities=45% Similarity=0.718 Sum_probs=9.7
Q ss_pred cchhhhHHHHH
Q psy8321 20 LGYQTWGLLHT 30 (124)
Q Consensus 20 lG~a~W~llHt 30 (124)
|+++.|.|-|.
T Consensus 27 L~PagWVLshL 37 (44)
T PF02285_consen 27 LGPAGWVLSHL 37 (44)
T ss_dssp HHHHHHHHHTH
T ss_pred HhhHHHHHHHH
Confidence 78999999985
No 24
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.43 E-value=1.1e+02 Score=25.94 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=39.9
Q ss_pred CCCCCCCccccchhhhHHHHHHhhc---------CCCCCCHHHHHHHHHHHHHhhhhc---CChhHH
Q psy8321 10 RPDCPLDKDLLGYQTWGLLHTMAAY---------YPDHPTPHQQRDMYNFFTLLAQFY---PCATCA 64 (124)
Q Consensus 10 ~~~~p~~~~~lG~a~W~llHtlAa~---------~p~~pt~~~~~~~~~fi~~f~~~~---PC~~C~ 64 (124)
-..||.++.++..++=.++|.+-++ +...++-.-|...++-++.++... .|+.||
T Consensus 252 ftFC~~~~~e~~~k~~~lis~i~~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcVgCekCr 318 (425)
T COG5061 252 FTFCPTDKDELSGKLSSLISAIRAQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCVGCEKCR 318 (425)
T ss_pred cccCCccHHHHHhHHHHHHHHHHhccccccceecccCccchhhhHHHHHHHHhHHHHHHhcCchhhh
Confidence 3689999999999988888877663 344556566777887788776554 455555
No 25
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=20.93 E-value=1.9e+02 Score=20.36 Aligned_cols=41 Identities=22% Similarity=0.510 Sum_probs=26.8
Q ss_pred hhHHHHHHhhcCCCCCC--HH-HHHHHHHHHHHhhhhcC--ChhHH
Q psy8321 24 TWGLLHTMAAYYPDHPT--PH-QQRDMYNFFTLLAQFYP--CATCA 64 (124)
Q Consensus 24 ~W~llHtlAa~~p~~pt--~~-~~~~~~~fi~~f~~~~P--C~~C~ 64 (124)
+=.+++.||.+.|+... .. --+.+..|-+.+-.-|| |..|.
T Consensus 83 Q~L~~~~LA~f~P~~e~p~y~~~~~e~~~Yr~~LE~rYP~lC~~C~ 128 (131)
T PF09779_consen 83 QHLKINQLASFLPDPEDPEYANYEEELPEYRRSLEQRYPQLCSSCE 128 (131)
T ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHhhHhhhhhh
Confidence 45678899998886433 22 23677788888877775 44443
No 26
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=20.00 E-value=60 Score=19.00 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=9.6
Q ss_pred cchhhhHHHHH
Q psy8321 20 LGYQTWGLLHT 30 (124)
Q Consensus 20 lG~a~W~llHt 30 (124)
|+++.|.|-|.
T Consensus 27 L~p~gWVLshL 37 (43)
T cd00930 27 LLPAGWVLSHL 37 (43)
T ss_pred HhhHHHHHHHH
Confidence 78999999885
Done!