Query psy8321
Match_columns 124
No_of_seqs 105 out of 523
Neff 6.4
Searched_HMMs 29240
Date Sat Aug 17 00:43:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5s_A FAD-linked sulfhydryl o 100.0 1.6E-54 5.6E-59 308.3 14.3 120 4-123 7-126 (126)
2 2hj3_A Sulfhydryl oxidase ERV1 100.0 1.2E-52 4.1E-57 298.4 11.6 116 9-124 2-118 (125)
3 1jr8_A ERV2 protein, mitochond 100.0 2.3E-49 7.8E-54 278.7 10.3 110 12-121 3-112 (117)
4 4e0h_A Mitochondrial FAD-linke 100.0 2.2E-47 7.7E-52 264.0 12.6 105 15-119 2-106 (106)
5 4e0i_A Mitochondrial FAD-linke 100.0 5.3E-47 1.8E-51 285.5 13.6 113 7-119 77-189 (189)
6 3gwl_A P14, FAD-linked sulfhyd 100.0 7.5E-44 2.6E-48 246.7 11.8 99 18-116 5-103 (106)
7 3gwn_A Probable FAD-linked sul 100.0 1.1E-43 3.7E-48 248.6 9.4 102 14-115 3-110 (114)
8 3td7_A FAD-linked sulfhydryl o 100.0 2.9E-32 9.8E-37 215.2 10.1 104 16-119 39-151 (295)
9 3t58_A Sulfhydryl oxidase 1; o 99.9 7.5E-27 2.6E-31 196.8 2.7 95 19-113 374-479 (519)
10 3llk_A Sulfhydryl oxidase 1; d 99.9 1.1E-24 3.9E-29 170.7 6.9 94 18-114 116-223 (261)
11 3qcp_A QSOX from trypanosoma b 99.9 7.5E-24 2.6E-28 177.3 3.3 86 19-115 299-390 (470)
12 3p0k_A Sulfhydryl oxidase; 4-h 64.9 3.6 0.00012 31.8 2.4 48 22-69 108-165 (266)
13 2lvu_A Zinc finger and BTB dom 55.6 3.4 0.00012 18.6 0.0 13 57-69 2-14 (26)
14 2lvt_A Zinc finger and BTB dom 47.1 5.7 0.0002 18.1 0.0 13 58-70 3-15 (29)
15 3vow_A Probable DNA DC->DU-edi 39.6 17 0.00059 26.7 2.4 18 58-75 95-112 (190)
16 2lvr_A Zinc finger and BTB dom 44.6 6.6 0.00023 17.8 0.0 13 57-69 3-15 (30)
17 3v4k_A DNA DC->DU-editing enzy 37.7 16 0.00056 27.1 2.1 18 58-75 109-126 (203)
18 2kfq_A FP1; protein, de novo p 26.5 8.1 0.00028 18.4 -0.9 14 58-71 3-16 (32)
19 1no1_A G39P, replisome organiz 21.4 1.8E+02 0.0062 19.7 5.0 52 26-78 8-62 (126)
No 1
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=100.00 E-value=1.6e-54 Score=308.35 Aligned_cols=120 Identities=52% Similarity=0.969 Sum_probs=116.9
Q ss_pred cccCCCCCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHH
Q psy8321 4 DRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKD 83 (124)
Q Consensus 4 ~~~~~~~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~ 83 (124)
.+++..+++||||+++|||++|++|||||++||++||.+++..++.||.+|+.+|||.+|+.||.++++++|++|+||++
T Consensus 7 ~~~~~~~~~~P~d~~elG~atW~~LHtia~~yP~~Pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~pp~l~SR~~ 86 (126)
T 3u5s_A 7 KRDTKFREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPXEEXAEDLRKRLARNHPDTRTRAA 86 (126)
T ss_dssp GGGTCCCSSSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHH
T ss_pred cccccccCCCCCCHHHcCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHCccccCCHHH
Confidence 35566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCChhcHHHhhccCCCCCCCC
Q psy8321 84 LSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123 (124)
Q Consensus 84 l~~Wl~~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~~~~~ 123 (124)
|++|||.+||.||+|||||+|||+.+.|||++||+|||||
T Consensus 87 l~~Wl~~~HN~VN~rLgKp~fd~~~~~ery~~g~~dg~~d 126 (126)
T 3u5s_A 87 FTQWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGSXD 126 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTTCCTTSTTC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHccCCCCCCCC
Confidence 9999999999999999999999999999999999999998
No 2
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-52 Score=298.43 Aligned_cols=116 Identities=46% Similarity=0.894 Sum_probs=100.5
Q ss_pred CCCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy8321 9 MRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWL 88 (124)
Q Consensus 9 ~~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl 88 (124)
++.+||+|+++||+|+|+||||||++||++|+.+++++++.||.+|+.||||.+|+.||.++++++|++|+||+++++||
T Consensus 2 ~~~~~p~~~~~lG~slW~llHtlaa~yp~~pt~~~~~~~~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWL 81 (125)
T 2hj3_A 2 SHMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWL 81 (125)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred CCCCCCCCccccCcchhHHHHHHHhhCcCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCChhcHHHhhccCCCC-CCCCC
Q psy8321 89 CWVHNTVNRKLGKPIFDCALVDERWKDGWED-GSCDF 124 (124)
Q Consensus 89 ~~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~-~~~~~ 124 (124)
|++||.||+|||||+|||++|+|||++||+| ||||+
T Consensus 82 w~~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~c~~ 118 (125)
T 2hj3_A 82 CHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCDL 118 (125)
T ss_dssp HHHHHHHHHHTTCCCCCTTSHHHHCC-----------
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhccCCCCCCCcCC
Confidence 9999999999999999999999999999999 99985
No 3
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=100.00 E-value=2.3e-49 Score=278.69 Aligned_cols=110 Identities=35% Similarity=0.709 Sum_probs=104.3
Q ss_pred CCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy8321 12 DCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWV 91 (124)
Q Consensus 12 ~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~ 91 (124)
.||+|+++||||+|+||||||++||++|+.++++.++.|+.+|+.||||.+|+.||.++++++|++|+||+++++|||++
T Consensus 3 ~~~~~~~~lG~s~W~llHtlaa~~p~~pt~~~~~~l~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~ 82 (117)
T 1jr8_A 3 GDDKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHI 82 (117)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHH
T ss_pred CCCcchhhccccHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCChhcHHHhhccCCCCCC
Q psy8321 92 HNTVNRKLGKPIFDCALVDERWKDGWEDGS 121 (124)
Q Consensus 92 HN~VN~rLgKp~~~c~~~~~rw~~~~~~~~ 121 (124)
||.||+|||||+|||+.++||||+||+||.
T Consensus 83 HN~VN~rL~kp~f~c~~~~er~~~g~~~~~ 112 (117)
T 1jr8_A 83 HNKVNEYLKKDIYDCATILEDYDCGCSDSD 112 (117)
T ss_dssp HHHHHHHTTCCCCCCTTHHHHTCCCC----
T ss_pred HHHHHHHhCCCCcCHHHHHHHHhcCCCCcc
Confidence 999999999999999999999999998874
No 4
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-47 Score=264.00 Aligned_cols=105 Identities=45% Similarity=1.025 Sum_probs=102.7
Q ss_pred CCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q psy8321 15 LDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNT 94 (124)
Q Consensus 15 ~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~ 94 (124)
+|+++|||++|++|||||++||++|+.+++..++.||.+|+.+|||++||.||.++++++|+.++||++|++|||.+||.
T Consensus 2 ~d~e~lGp~~W~~lHtia~~yP~~pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~ 81 (106)
T 4e0h_A 2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNK 81 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCChhcHHHhhccCCCC
Q psy8321 95 VNRKLGKPIFDCALVDERWKDGWED 119 (124)
Q Consensus 95 VN~rLgKp~~~c~~~~~rw~~~~~~ 119 (124)
||+|||||+|||+.+.+||++||+|
T Consensus 82 VN~rLgKp~f~~~~~~~ry~~g~~d 106 (106)
T 4e0h_A 82 VNKKLRKPKFDCNFWEKRWKDGWDE 106 (106)
T ss_dssp HHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999987
No 5
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-47 Score=285.54 Aligned_cols=113 Identities=42% Similarity=0.918 Sum_probs=109.4
Q ss_pred CCCCCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHH
Q psy8321 7 AVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQ 86 (124)
Q Consensus 7 ~~~~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~ 86 (124)
+..+.+||||+++|||++|++|||||++||++|+.++++.++.||.+|+.+|||.+|+.||.++++++|+.++||++|++
T Consensus 77 ~~~~~~~P~d~~elGp~~W~~LHTiA~~YP~~Pt~~~k~~~~~Fi~~l~~~lPC~~C~~hf~~~lk~~pp~l~SR~~l~~ 156 (189)
T 4e0i_A 77 RTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRENAPQVESREELGR 156 (189)
T ss_dssp SSCBCCCCCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHH
T ss_pred cCCcCCCCCChhhcCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHCccccCCHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCChhcHHHhhccCCCC
Q psy8321 87 WLCWVHNTVNRKLGKPIFDCALVDERWKDGWED 119 (124)
Q Consensus 87 Wl~~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~ 119 (124)
|||.+||.||+|||||+|+|+.+.|||++||+|
T Consensus 157 Wl~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d 189 (189)
T 4e0i_A 157 WMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 189 (189)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999987
No 6
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=100.00 E-value=7.5e-44 Score=246.69 Aligned_cols=99 Identities=21% Similarity=0.426 Sum_probs=96.2
Q ss_pred cccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHh
Q psy8321 18 DLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNR 97 (124)
Q Consensus 18 ~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~ 97 (124)
.+|||++|++|||||++||++||.++++.++.||+.|..+|||.+|+.||+++++++|+++.+++++++|||++||.||+
T Consensus 5 ~~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~yPC~~Ca~hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~ 84 (106)
T 3gwl_A 5 LHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNN 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHhHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChhcHHHhhccC
Q psy8321 98 KLGKPIFDCALVDERWKDG 116 (124)
Q Consensus 98 rLgKp~~~c~~~~~rw~~~ 116 (124)
|||||+|||+++.|||+-.
T Consensus 85 rLgKp~fdc~~~~e~y~~~ 103 (106)
T 3gwl_A 85 RLNKKIISWSEYKNIYEQS 103 (106)
T ss_dssp HTTCCCCCHHHHHHHHTTT
T ss_pred hhCCCCCCHHHHHHHHHHH
Confidence 9999999999999999864
No 7
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.1e-43 Score=248.61 Aligned_cols=102 Identities=25% Similarity=0.509 Sum_probs=98.8
Q ss_pred CCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCC----CC-CCCHHHHHHHH
Q psy8321 14 PLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRP----PV-TTSRKDLSQWL 88 (124)
Q Consensus 14 p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p----~~-v~sr~~l~~Wl 88 (124)
++++++|||++|++|||||++||++||++++++++.||.+|+.+|||.+|++||+++++++| ++ |+||+++++||
T Consensus 3 g~~p~~~Grs~W~llHt~aa~~p~~pt~~~~~~~~~fi~~~~~~yPC~~Ca~hf~~~~~~~p~~~~~~~v~sr~~~~~Wl 82 (114)
T 3gwn_A 3 GLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWF 82 (114)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHTTSGGGCCCGGGGSSHHHHHHHH
T ss_pred CCchhhhcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCccccCCHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999 88 99999999999
Q ss_pred HHHHHHHHhhhCCCC-CChhcHHHhhcc
Q psy8321 89 CWVHNTVNRKLGKPI-FDCALVDERWKD 115 (124)
Q Consensus 89 ~~~HN~VN~rLgKp~-~~c~~~~~rw~~ 115 (124)
|++||.||+|||||+ ++|++|.|||+.
T Consensus 83 c~~HN~VN~rLgKp~~~~~~~v~ery~~ 110 (114)
T 3gwn_A 83 YDVHNAVNNKLEVDYGLSYEDVVNKYES 110 (114)
T ss_dssp HHHHHHHHHHTTCCCCCCHHHHHHHHHT
T ss_pred HHHHhHHHHHhCCCCcCCHHHHHHHHHH
Confidence 999999999999996 789999999986
No 8
>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}
Probab=99.97 E-value=2.9e-32 Score=215.21 Aligned_cols=104 Identities=26% Similarity=0.502 Sum_probs=93.1
Q ss_pred CccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCC-----CCCCCHHHHHHHHHH
Q psy8321 16 DKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRP-----PVTTSRKDLSQWLCW 90 (124)
Q Consensus 16 ~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p-----~~v~sr~~l~~Wl~~ 90 (124)
....|||++|++|||||++||++|+.++++.++.||.+|+.+|||++|+.||.++++++| +.++||++|+.|+|.
T Consensus 39 ~TkVWGPstW~fLHTIAa~YPenPT~~dKk~y~~FI~nL~~vLPC~~Cr~HF~k~Lkk~Pv~~~~p~L~SRdsLskWL~~ 118 (295)
T 3td7_A 39 ITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFYD 118 (295)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHTTSGGGCCCTTGGGSHHHHHHHHHH
T ss_pred ccCcCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999887 348999999999999
Q ss_pred HHHHHHhhhCCCC-CChhcHH---HhhccCCCC
Q psy8321 91 VHNTVNRKLGKPI-FDCALVD---ERWKDGWED 119 (124)
Q Consensus 91 ~HN~VN~rLgKp~-~~c~~~~---~rw~~~~~~ 119 (124)
+||.||++||||. ++.+.+. |.|+.+|.+
T Consensus 119 iHN~VNkrLGKP~~lSYedv~kkYE~yrakC~k 151 (295)
T 3td7_A 119 VHNAVNNKLEVDYGLSYEDVVNKYESFRAKCGK 151 (295)
T ss_dssp HHHHHHHHHTCCCCCCHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhccCCCC
Confidence 9999999999995 6665554 555667654
No 9
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=99.92 E-value=7.5e-27 Score=196.78 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=80.4
Q ss_pred ccchhhhHHHHHHhhcCCCCCCH------HHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q psy8321 19 LLGYQTWGLLHTMAAYYPDHPTP------HQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVH 92 (124)
Q Consensus 19 ~lG~a~W~llHtlAa~~p~~pt~------~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~H 92 (124)
..=+|+|+||||||++||++|+. .++..+..|...+..||||.+|+.||.+++++++++|+||+++++|||++|
T Consensus 374 g~~C~lW~l~Htltv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ff~C~~Ca~hF~~~~~~~~~~v~s~~~~~~Wlw~~H 453 (519)
T 3t58_A 374 GFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQVRSPSNAILWLWTSH 453 (519)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTSTTSCCCSCHHHHHHHHHHHHHCSBHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHccCccCCccccccccchHHHHHHHHHHHHHCCCchHHHHHHHHHHhhCCCcCCCHHHHHHHHHHhh
Confidence 45569999999999999998765 455667777777778899999999999999999999999999999999999
Q ss_pred HHHHhhh-----CCCCCChhcHHHhh
Q psy8321 93 NTVNRKL-----GKPIFDCALVDERW 113 (124)
Q Consensus 93 N~VN~rL-----gKp~~~c~~~~~rw 113 (124)
|.||+|| ++|.|++..+.-+-
T Consensus 454 N~VN~rL~~~~~~dp~f~k~q~P~~~ 479 (519)
T 3t58_A 454 NRVNARLSGALSEDPHFPKVQWPPRE 479 (519)
T ss_dssp HHHHHHHTTCTTCCTTSCCCSSSCTT
T ss_pred CHHHhhcCCCCCCCCCCCccCCCCch
Confidence 9999999 56777766554333
No 10
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=99.90 E-value=1.1e-24 Score=170.66 Aligned_cols=94 Identities=20% Similarity=0.323 Sum_probs=75.6
Q ss_pred cccchhhhHHHHHHhhcCCCCCCH---------HHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy8321 18 DLLGYQTWGLLHTMAAYYPDHPTP---------HQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWL 88 (124)
Q Consensus 18 ~~lG~a~W~llHtlAa~~p~~pt~---------~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl 88 (124)
...=+|+|+|||+||++++++|+. +..++|+.||+. ||||.+|++||+++++++|++|+|++++++||
T Consensus 116 RGy~CgLW~LFH~LTV~a~~~~~~~~~~~~~~~~vl~ai~~fv~~---FypC~~Ca~hF~~~~~~~~~~v~sr~~~~lWL 192 (261)
T 3llk_A 116 RGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHY---FFGCRDCASHFEQMAAASMHRVGSPNAAVLWL 192 (261)
T ss_dssp SSHHHHHHHHHHHHHHHHHCC---------CGGGHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHGGGCCSHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHhhhhcccccccccccCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 345569999999999998877632 234677777775 59999999999999999999999999999999
Q ss_pred HHHHHHHHhhhC-----CCCCChhcHHHhhc
Q psy8321 89 CWVHNTVNRKLG-----KPIFDCALVDERWK 114 (124)
Q Consensus 89 ~~~HN~VN~rLg-----Kp~~~c~~~~~rw~ 114 (124)
|++||.||+||+ .|.|++..+.-+-.
T Consensus 193 w~~HN~VN~rLag~~seDP~fpK~qwP~~~~ 223 (261)
T 3llk_A 193 WSSHNRVNARLAGAPSEDPQFPKVQWPPREL 223 (261)
T ss_dssp HHHHHHHHHHHTTCTTSCTTSCCCSSSCTTT
T ss_pred HHhcCHHhhhcCCCCCCCCCCCccCCCCchh
Confidence 999999999994 56777655544333
No 11
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=99.88 E-value=7.5e-24 Score=177.31 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=71.6
Q ss_pred ccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy8321 19 LLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRK 98 (124)
Q Consensus 19 ~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~r 98 (124)
..=+++|+||||||++||+ ++..+..|...+..||||.+|+.||.+++ ++|++++++|||++||.||+|
T Consensus 299 g~~CslW~l~Htlt~~~~~-----~~~~~~~~~~~~~~ffpC~~Ca~hF~~~~------~~s~~~~~lWlw~~HN~VN~r 367 (470)
T 3qcp_A 299 GFPCGMWLLLHALTVNTPA-----DRNVLEVIQNYIRYFFSCKECRDHFIQFN------FSPNEDPVLQLWRAHNNVNAR 367 (470)
T ss_dssp SHHHHHHHHHHHHHHHCCT-----TCCHHHHHHHHHHHHCSCHHHHHHHTTCC------CCSSSCHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHccCcHHHHHHHHHHh------ccCHHHHHHHHHHHhCHHHHh
Confidence 3556999999999999998 35566666666677899999999999876 789999999999999999999
Q ss_pred hCC------CCCChhcHHHhhcc
Q psy8321 99 LGK------PIFDCALVDERWKD 115 (124)
Q Consensus 99 LgK------p~~~c~~~~~rw~~ 115 (124)
|+| |.|||..+.-...|
T Consensus 368 L~~~~~~~dp~fpk~~~P~~~~C 390 (470)
T 3qcp_A 368 LANVKDGADPLVPKRQFPTLEAC 390 (470)
T ss_dssp HTTCCTTSCTTSCCCCSSCTTTC
T ss_pred cCCCCCCCCCCCCccCCCCchhC
Confidence 997 77888766544443
No 12
>3p0k_A Sulfhydryl oxidase; 4-helix bundle, 5-helix bundle, flavin adenine dinucleotide, oxidoreductase, viral protein; HET: FAD; 1.47A {Autographa californica nucleopolyhedro} PDB: 3qzy_A* 3ust_A*
Probab=64.87 E-value=3.6 Score=31.84 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=33.7
Q ss_pred hhhhHHHHHHhhcCC------CCCCH----HHHHHHHHHHHHhhhhcCChhHHHHHHH
Q psy8321 22 YQTWGLLHTMAAYYP------DHPTP----HQQRDMYNFFTLLAQFYPCATCARDFAN 69 (124)
Q Consensus 22 ~a~W~llHtlAa~~p------~~pt~----~~~~~~~~fi~~f~~~~PC~~C~~hf~~ 69 (124)
.-.|=.+|.||--.. ++-+. .+.+.++..+.++-..+-|+-||+|+..
T Consensus 108 ~TIWD~IHfL~li~DDmV~nR~k~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 165 (266)
T 3p0k_A 108 TTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMN 165 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHCCCCSSCCHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHHHHHHHhhHhheeCChHHhHHHEe
Confidence 457999999985321 22222 2346777777777677889999999875
No 13
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=55.57 E-value=3.4 Score=18.55 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.7
Q ss_pred hcCChhHHHHHHH
Q psy8321 57 FYPCATCARDFAN 69 (124)
Q Consensus 57 ~~PC~~C~~hf~~ 69 (124)
-|.|..|++.|..
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 3789999998875
No 14
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=47.06 E-value=5.7 Score=18.10 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=10.5
Q ss_pred cCChhHHHHHHHH
Q psy8321 58 YPCATCARDFANL 70 (124)
Q Consensus 58 ~PC~~C~~hf~~~ 70 (124)
|.|..|.+.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 7899999988653
No 15
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=39.62 E-value=17 Score=26.71 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=16.5
Q ss_pred cCChhHHHHHHHHHhhCC
Q psy8321 58 YPCATCARDFANLLRVRP 75 (124)
Q Consensus 58 ~PC~~C~~hf~~~~~~~p 75 (124)
=||.+|+....+++++++
T Consensus 95 SPC~~CA~~va~FL~~~~ 112 (190)
T 3vow_A 95 SPCPDCAGEVAEFLARHS 112 (190)
T ss_dssp CCCHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHhCC
Confidence 499999999999999887
No 16
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=44.64 E-value=6.6 Score=17.83 Aligned_cols=13 Identities=46% Similarity=1.053 Sum_probs=10.7
Q ss_pred hcCChhHHHHHHH
Q psy8321 57 FYPCATCARDFAN 69 (124)
Q Consensus 57 ~~PC~~C~~hf~~ 69 (124)
-|.|..|.+.|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 4789999998875
No 17
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=37.74 E-value=16 Score=27.09 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=16.4
Q ss_pred cCChhHHHHHHHHHhhCC
Q psy8321 58 YPCATCARDFANLLRVRP 75 (124)
Q Consensus 58 ~PC~~C~~hf~~~~~~~p 75 (124)
=||.+|+....++++.+|
T Consensus 109 SPC~~CA~~v~~FL~~~~ 126 (203)
T 3v4k_A 109 SPCFSCAQEMAKFISKNK 126 (203)
T ss_pred CChHHHHHHHHHHHhhCC
Confidence 499999999999999877
No 18
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.46 E-value=8.1 Score=18.42 Aligned_cols=14 Identities=21% Similarity=0.774 Sum_probs=11.3
Q ss_pred cCChhHHHHHHHHH
Q psy8321 58 YPCATCARDFANLL 71 (124)
Q Consensus 58 ~PC~~C~~hf~~~~ 71 (124)
|.|..|.+.|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (32)
T 2kfq_A 3 FACPACPKRFMRSD 16 (32)
T ss_dssp SSSSSSCTTHHHHH
T ss_pred CCCCCCCcccCCHH
Confidence 78999999987643
No 19
>1no1_A G39P, replisome organizer, gene 39; helical, bipartite, natively unfolded domain, replication; 2.40A {Bacillus phage SPP1} SCOP: a.179.1.1
Probab=21.42 E-value=1.8e+02 Score=19.69 Aligned_cols=52 Identities=17% Similarity=0.409 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCC-CCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhh--CCCCC
Q psy8321 26 GLLHTMAAYYPD-HPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRV--RPPVT 78 (124)
Q Consensus 26 ~llHtlAa~~p~-~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~--~p~~v 78 (124)
.+|.++.+.||. -...+.+..+..|...+. -||-..=+....++++. +||.+
T Consensus 8 ~lL~lI~~aYP~~f~~d~~~~~ve~W~~lL~-d~~ye~v~~Al~~hI~~~~yPPsi 62 (126)
T 1no1_A 8 QILKAVSEFYPGRFQPDDLKGTVKAWHRVLA-EYELEEIMNNLTDYAKVNKFPPTV 62 (126)
T ss_dssp HHHHHHHHHSTTTCCCTTHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHCSSCCCG
T ss_pred HHHHHHHHHCHHHhcCccchHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCCH
Confidence 478899999995 222234666777777775 57778888888888886 45543
Done!