RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8321
(124 letters)
>gnl|CDD|227387 COG5054, ERV1, Mitochondrial sulfhydryl oxidase involved in the
biogenesis of cytosolic Fe/S proteins [Posttranslational
modification, protein turnover, chaperones].
Length = 181
Score = 140 bits (353), Expect = 2e-43
Identities = 49/104 (47%), Positives = 64/104 (61%)
Query: 16 DKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRP 75
D + LG +W LLHT+AA YP PTP Q+ D+ +F L + YPC C++ F LL V P
Sbjct: 78 DVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYP 137
Query: 76 PVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWED 119
P +SR+ + W C VHN VN KLGKP FDC +ER+ G +
Sbjct: 138 PQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERYDCGCDT 181
>gnl|CDD|218261 pfam04777, Evr1_Alr, Erv1 / Alr family. Biogenesis of Fe/S
clusters involves a number of essential mitochondrial
proteins. Erv1p of Saccharomyces cerevisiae mitochondria
is required for the maturation of Fe/S proteins in the
cytosol. The ALR (augmenter of liver regeneration)
represents a mammalian orthologue of yeast Erv1p. Both
Erv1p and full-length ALR are located in the
mitochondrial intermembrane an d it thought to operate
downstream of the mitochondrial ABC transporter.
Length = 95
Score = 121 bits (305), Expect = 3e-37
Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 24 TWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKD 83
W LLHT+AA YPD+PTP ++ + +F + FYPC CA F +L PP +SR D
Sbjct: 3 LWTLLHTLAARYPDNPTPEEKEVLKSFLGSFSHFYPCEECAEHFQKILAKNPPQVSSRDD 62
Query: 84 LSQWLCWVHNTVNRKLGKPIF-DCALVDERWKD 115
LS WLC HN VN +LGKP+F V ER+ D
Sbjct: 63 LSLWLCEAHNEVNARLGKPLFCSDPKVKERYPD 95
>gnl|CDD|225470 COG2918, GshA, Gamma-glutamylcysteine synthetase [Coenzyme
metabolism].
Length = 518
Score = 29.3 bits (66), Expect = 0.52
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 66 DFA-NLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLG 100
DFA +LL PVT +D +L +H V RKLG
Sbjct: 60 DFAESLLEFITPVTKDIEDTLTFLRDIHRFVARKLG 95
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 28.6 bits (64), Expect = 0.93
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 8/31 (25%)
Query: 91 VHNTV--NRKLGKPIFDCALVDERWKDGWED 119
V NTV RKL + LV E++ DGW+D
Sbjct: 495 VTNTVMSKRKLNR------LVTEKYVDGWDD 519
>gnl|CDD|219290 pfam07084, Spot_14, Thyroid hormone-inducible hepatic protein
Spot 14. This family consists of several thyroid
hormone-inducible hepatic protein (Spot 14 or S14)
sequences. Mainly expressed in tissues that synthesise
triglycerides, the mRNA coding for Spot 14 has been
shown to be increased in rat liver by insulin, dietary
carbohydrates, glucose in hepatocyte culture medium, as
well as thyroid hormone. In contrast, dietary fats and
polyunsaturated fatty acids, have been shown to
decrease the amount of Spot 14 mRNA, while an elevated
level of cAMP acts as a dominant negative factor. In
addition, liver-specific factors or chromatin
organisation of the gene have been shown to contribute
to the regulation of its expression. Spot 14 protein is
thought to be required for induction of hepatic
lipogenesis.
Length = 160
Score = 27.5 bits (61), Expect = 1.6
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 8 VMRP----DCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLL 54
VM P D PLD++ + A RDMY+++ LL
Sbjct: 30 VMVPSLLRDVPLDQEGE--------DQVVANNNGPYFQEGARDMYSYYLLL 72
>gnl|CDD|213771 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream
region protein. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed so far only in
the Chlamydiae, always as part of a two-gene operon,
upstream of the homolog of GcvH. Its function is unknown
[Unknown function, General].
Length = 686
Score = 27.2 bits (60), Expect = 2.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 28 LHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCA--RDFANL 70
L + Y P Q++ NF +L QF TC+ +DF NL
Sbjct: 399 LQDLEKYVPMVEVYQWQQNPENFQEILQQFPELETCSSLKDFQNL 443
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 27.2 bits (61), Expect = 2.7
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 62 TCARDFANLLRVRPPVTTSRKDLSQ 86
TC N+LR+ PP+T S ++L +
Sbjct: 411 TCGP-HGNVLRILPPLTISDEELDE 434
>gnl|CDD|182157 PRK09940, PRK09940, transcriptional regulator YdeO; Provisional.
Length = 253
Score = 27.0 bits (59), Expect = 3.0
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 18/91 (19%)
Query: 26 GLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLS 85
GLL+ M AY H F+ L+ F C + F LL ++ S K
Sbjct: 87 GLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC----KGFITLL-TNGVLSVSGK--- 138
Query: 86 QWLCWVHNTVNRKLGKP-----IFDCALVDE 111
V N VN KL P I DC + E
Sbjct: 139 -----VRNIVNMKLAHPWKLKDICDCLYISE 164
>gnl|CDD|216224 pfam00975, Thioesterase, Thioesterase domain. Peptide
synthetases are involved in the non-ribosomal synthesis
of peptide antibiotics. Next to the operons encoding
these enzymes, in almost all cases, are genes that
encode proteins that have similarity to the type II
fatty acid thioesterases of vertebrates. There are also
modules within the peptide synthetases that also share
this similarity. With respect to antibiotic production,
thioesterases are required for the addition of the last
amino acid to the peptide antibiotic, thereby forming a
cyclic antibiotic. Thioesterases (non-integrated) have
molecular masses of 25-29 kDa.
Length = 224
Score = 26.6 bits (59), Expect = 3.6
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 28 LHTMAAYYPDHPTPHQQRDMYNFF 51
+ +A Y + Q Y F
Sbjct: 47 IEELAEEYAEALRRIQPEGPYALF 70
>gnl|CDD|217994 pfam04262, Glu_cys_ligase, Glutamate-cysteine ligase. Family of
bacterial f glutamate-cysteine ligases (EC:6.3.2.2) that
carry out the first step of the glutathione biosynthesis
pathway.
Length = 376
Score = 26.6 bits (59), Expect = 3.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 66 DFA-NLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLG 100
DFA +LL P + +D +L +H V KL
Sbjct: 56 DFAESLLEFITPPSKDIEDTLAFLSDIHRFVQSKLK 91
>gnl|CDD|214398 MTH00004, ND5, NADH dehydrogenase subunit 5; Validated.
Length = 602
Score = 26.7 bits (60), Expect = 4.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 26 GLLHTMA-AYYPDHPTPHQQRDMYNFFTLLAQFYP 59
G+L + + TP +Q ++NF LA F P
Sbjct: 496 GILLALELSNMTTTLTPPKQNTLHNFSNQLAFFNP 530
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 26.2 bits (58), Expect = 4.6
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 21 GYQTWGLLHTMAAYYPDHPTPHQQR--DMYN---FFTLL-AQFYPCATCARDFANLLRVR 74
G + + LL+ + YY P P D Y ++ A F V
Sbjct: 191 GGEDFELLYRLLLYYKKFPPPKDLLTYDEYKWPITYSGFRAYFS---YLGLPELFEGIVI 247
Query: 75 PPVTTSRKDLSQWLCWVHNTVNRKL 99
+ R S +L N N L
Sbjct: 248 FHLYHKRPRSSAYLK--RNDKNDLL 270
>gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase.
Length = 894
Score = 26.5 bits (58), Expect = 4.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 81 RKDLSQWLCWVHNTV 95
RKDL +WLCW+ V
Sbjct: 651 RKDLKEWLCWMRKEV 665
>gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional.
Length = 854
Score = 26.2 bits (57), Expect = 6.0
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 59 PCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWK--DG 116
P R A L RP V L + + + P+ D L+ +RW
Sbjct: 186 PGELTFRRIAAALG-RPMVPIGSPVLRRVTSFAE--LELLHSAPLMDVTLLRDRWGFQPA 242
Query: 117 WEDGSC 122
W C
Sbjct: 243 WNAEEC 248
>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate
dehydratase/shikimate dehydrogenase.
Length = 529
Score = 25.9 bits (57), Expect = 6.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 21 GYQTWGLLHTMAAYYPDHPTPHQQRDMYNF 50
GY T+G L P PT D+YNF
Sbjct: 216 GYLTFGTLEAGKVSAPGQPTIKDLLDLYNF 245
>gnl|CDD|204665 pfam11494, Ta0938, Ta0938. Ta0938 is a protein of unknown
function however the structure has been determined. The
protein has a novel fold and a putative Zn-binding
motif. The structure has two different parts, one
region contains a beta sheet flanked by two alpha
helices and the other contains a bundle of loops which
contain all cysteines in the protein.
Length = 106
Score = 24.8 bits (54), Expect = 9.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 57 FYPCATCARDFANLLR 72
F+ C CA +F N+L
Sbjct: 37 FFCCDICALEFVNMLN 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.498
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,352,904
Number of extensions: 522753
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 24
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)