RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8321
(124 letters)
>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET:
FAD; 1.85A {Homo sapiens} PDB: 3r7c_A*
Length = 139
Score = 143 bits (361), Expect = 2e-45
Identities = 68/120 (56%), Positives = 82/120 (68%)
Query: 4 DRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATC 63
R R DCP D++ LG +W +LHT+AAYYPD PTP QQ+DM F L ++FYPC C
Sbjct: 20 KRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEEC 79
Query: 64 ARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
A D L P T +R +QWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct: 80 AEDLRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 139
>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase,
helix-turn-HELI oxidoreductase; HET: FAD; 1.80A {Rattus
norvegicus} SCOP: a.24.15.1 PDB: 3o55_A*
Length = 125
Score = 140 bits (353), Expect = 2e-44
Identities = 68/120 (56%), Positives = 82/120 (68%)
Query: 4 DRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATC 63
R R DCP D++ LG TW LHT+AAYYPD PTP QQ+DM F + ++FYPC C
Sbjct: 6 KRDIKFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEEC 65
Query: 64 ARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
A D + P T++R SQWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct: 66 AEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 125
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical
bundle, CXXC, oxidoreductase; HET: FAD; 1.50A
{Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Length = 117
Score = 127 bits (321), Expect = 1e-39
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 14 PLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRV 73
K +G +W HT+ A +PD PTP ++ ++ F L A+ YPC C+ F L+
Sbjct: 5 DKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEK 64
Query: 74 RPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSC 122
P T+SR + W C +HN VN L K I+DCA + E + G D
Sbjct: 65 YPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSDSDG 113
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine
dinucleotide, oxidoreductase; HET: FAD; 2.50A
{Arabidopsis thaliana}
Length = 125
Score = 121 bits (304), Expect = 5e-37
Identities = 55/115 (47%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 10 RPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFAN 69
P+ K+ LG TW LHT+AA YP+ PT Q++D+ T+L++ YPC CA F
Sbjct: 3 HMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKE 62
Query: 70 LLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERW-KDGWEDGSCD 123
+LR P S+++ SQWLC VHNTVNR LGK +F C VD RW K E SCD
Sbjct: 63 ILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCD 117
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle,
cytoplasm, disulfide bond, flavoprotein, late protein;
HET: FAD; 2.10A {African swine fever virus BA71V}
Length = 106
Score = 105 bits (263), Expect = 5e-31
Identities = 21/102 (20%), Positives = 37/102 (36%)
Query: 15 LDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVR 74
G + W LH A ++ D P+ ++ + + + PC C + L
Sbjct: 2 SHMLHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKN 61
Query: 75 PPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDG 116
P + +D W HN VN +L K I + ++
Sbjct: 62 PLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQS 103
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle,
homodimer, disulfide bond, flavoprot oxidoreductase,
virion; HET: FAD; 1.78A {Acanthamoeba polyphaga
mimivirus}
Length = 114
Score = 95.6 bits (237), Expect = 6e-27
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 15 LDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLR-- 72
L + G W H + YP +PT +R N+F L PC C + +
Sbjct: 4 LITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTG 63
Query: 73 ---VRPPVTTSRKDLSQWLCWVHNTVNRKLGKP-IFDCALVDERWK 114
+ V +R L++W VHN VN KL V +++
Sbjct: 64 KTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYE 109
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 89.8 bits (222), Expect = 3e-23
Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 24 TWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLA------QFYPCATCARDFANLLRVRPPV 77
W L H + H Q L A F+ C CA F +
Sbjct: 122 LWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHR 181
Query: 78 TTSRKDLSQWLCWVHNTVNRKL-GKPIFDCALVDERW 113
S WL HN VN +L G P D +W
Sbjct: 182 VGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW 218
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 42.2 bits (98), Expect = 1e-05
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 25 WGLLHTMAAYYPDHPTPHQQRDMYNFFTLLA------QFYPCATCARDFANLLRVRPPVT 78
W L H + + H Q L A F+ C A F +
Sbjct: 380 WVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQV 439
Query: 79 TSRKDLSQWLCWVHNTVNRKL 99
S + WL HN VN +L
Sbjct: 440 RSPSNAILWLWTSHNRVNARL 460
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 38.1 bits (87), Expect = 3e-04
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 25 WGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDL 84
W LLH + P + + N+ + F+ C C F + +D
Sbjct: 305 WLLLHALTVNTPADRNVLEV--IQNY---IRYFFSCKECRDHFIQF------NFSPNEDP 353
Query: 85 SQWLCWVHNTVNRKL 99
L HN VN +L
Sbjct: 354 VLQLWRAHNNVNARL 368
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.47
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 45 RDMYN-FFTLLAQFYPCATCARDFANLLRVRPPVTTSRK-----DLSQWL 88
RD+Y + L+ A + L +R + + ++ +WL
Sbjct: 174 RDLYQTYHVLVGDL--IKFSAETLSEL--IRTTLDAEKVFTQGLNILEWL 219
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 25.8 bits (56), Expect = 4.0
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 34 YYPDHPTPHQQRDMYNFFTLL----------AQFYPCATCARDFANLLRV 73
YP++ + + + + Y TCA D N+ V
Sbjct: 285 CYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 25.2 bits (55), Expect = 7.1
Identities = 5/37 (13%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 66 DFA-NLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGK 101
D++ L + P+ ++ ++L + + R +
Sbjct: 58 DYSEPQLELITPIAKDSQEAIRFLKAISDVAGRSINH 94
>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1,
structural genomics, PSI-2, protein structure
initiative; HET: MSE UNL; 1.69A {Lactobacillus casei}
SCOP: d.198.4.1
Length = 123
Score = 24.5 bits (53), Expect = 7.6
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 28 LHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCAT 62
+ ++A +Y PTP + + F + +P
Sbjct: 2 MGSLAEWYQRIPTPDDLTRVESLFANMQAQFPQLK 36
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint
center for structural genomics, J protein structure
initiative; 2.20A {Shewanella oneidensis}
Length = 280
Score = 24.9 bits (55), Expect = 7.7
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 7/30 (23%)
Query: 34 YYPDHPTPHQQRDM-------YNFFTLLAQ 56
+YP + + N T+L
Sbjct: 156 HYPPMTGDEEMGAIRAAAHEDINLITVLPT 185
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics,
joint center for structural genomics; HET: MSE; 1.44A
{Caulobacter crescentus CB15}
Length = 312
Score = 24.9 bits (55), Expect = 9.3
Identities = 11/35 (31%), Positives = 11/35 (31%), Gaps = 10/35 (28%)
Query: 27 LLHTMAAYYPDHPTPHQQR-----DMYNFFTLLAQ 56
LLH Y P R D N TLL
Sbjct: 173 LLH----YPPIPKDATGVRAGAHGD-INTITLLLG 202
>3ppb_A Putative TETR family transcription regulator; DNA-binding,
helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical
bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Length = 195
Score = 24.6 bits (54), Expect = 9.4
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 14 PLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLA 55
+L+ G Y+ DHP QQ + L
Sbjct: 147 EYPIELMQDNCHGQYLAATRYFVDHPERWQQAHERSASFALF 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.498
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,035,944
Number of extensions: 102313
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 34
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)