RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8321
         (124 letters)



>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 112

 Score =  132 bits (334), Expect = 3e-42
 Identities = 65/111 (58%), Positives = 79/111 (71%)

Query: 12  DCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLL 71
           DCP D++ LG  TW  LHT+AAYYPD PTP QQ+DM  F  + ++FYPC  CA D    +
Sbjct: 2   DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRI 61

Query: 72  RVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSC 122
               P T++R   SQWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSC
Sbjct: 62  DRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 112


>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 105

 Score =  114 bits (287), Expect = 4e-35
 Identities = 38/100 (38%), Positives = 55/100 (55%)

Query: 17  KDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPP 76
           K  +G  +W   HT+ A +PD PTP ++  ++ F  L A+ YPC  C+  F  L+   P 
Sbjct: 5   KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 64

Query: 77  VTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDG 116
            T+SR   + W C +HN VN  L K I+DCA + E +  G
Sbjct: 65  QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCG 104


>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK
           {Desulfitobacterium hafniense [TaxId: 49338]}
          Length = 80

 Score = 25.5 bits (56), Expect = 0.92
 Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 72  RVRPPVTTSRKDLSQWLCWVHNTVNRKLGK 101
            +  P++  +K + +     H TV+R L  
Sbjct: 26  EITMPLS--QKSIGEITGVHHVTVSRVLAS 53


>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 53

 Score = 23.4 bits (50), Expect = 3.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 58 YPCATCARDFANLLRVR 74
           PC  C + F +  R+R
Sbjct: 7  LPCGLCGKVFTDANRLR 23


>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
           vulgare), 1,3-beta-glucanase [TaxId: 4513]}
          Length = 306

 Score = 23.4 bits (50), Expect = 9.4
 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 75  PPVTTSRKDLSQWLCWVHN-TVNRKLGKPIFDCALVDERWKDG 116
                +R      +  V   T  ++     +  A+ +E  K G
Sbjct: 242 ASAGNARTYNQGLINHVGGGTPKKREALETYIFAMFNENQKTG 284


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.498 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 525,598
Number of extensions: 21795
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 19
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)