RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8322
(651 letters)
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 245 bits (626), Expect = 3e-75
Identities = 111/339 (32%), Positives = 172/339 (50%), Gaps = 51/339 (15%)
Query: 296 ESKDLLVVNISTAP-VHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIR 354
E ++L V+ IS P +H+ G P K +GN+HG+E +GRE++L L+EYL + D +
Sbjct: 41 ELRELYVMEISDNPGIHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNF-GTDPEVT 99
Query: 355 FLLDNTRIHLLPNLNPDGSELAVEGNCRSGRGRTP------------------------- 389
L+ +TRIH++P++NPDG E + EG+ GR
Sbjct: 100 DLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQFFQVTDPPQPET 159
Query: 390 ----------PFLISLFL---------PFPVTKNKPA---LTPDTDVFLHLASTYARLHP 427
PF++S L PF + A +PD VF LA +Y++ +
Sbjct: 160 LAVMSWLKTYPFVLSANLHGGSLVVNYPFDDDEQGIAIYSKSPDDAVFQQLALSYSKENK 219
Query: 428 TMHMKRPCP-GNTVLKFENGVTNGAAWYSFSGGMADYNYLYHGCLELTLEISCCRYPAPS 486
M+ PC F +G+TNGA WY+ GGM D+NYL C E+T+E+ C +YP
Sbjct: 220 KMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKAE 279
Query: 487 EIPIHWRSNQNALISWLQQVHRGVKGLVLD-ETGSRLANVSISLAYKNVSFMSSQRGEYW 545
E+P +W N+ +L+ +++QVHRG+ G VLD G + N +IS+A N + + G+YW
Sbjct: 280 ELPKYWEQNRRSLLQFIKQVHRGIWGFVLDATDGRGILNATISVADINHPVTTYKDGDYW 339
Query: 546 RVLMPGIYFIEASKEGYELFRDRIKIPESTSPVVGAVLE 584
R+L+ G Y + AS GY+ +++ V L
Sbjct: 340 RLLVQGTYKVTASARGYDPVTKTVEVDSKGGVQVNFTLS 378
Score = 189 bits (482), Expect = 2e-54
Identities = 78/192 (40%), Positives = 118/192 (61%), Gaps = 12/192 (6%)
Query: 27 NYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAP-VHQLGVPNVKIVG 85
+H++ M L + Y ++T LYS+GKSV ++L V+ IS P +H+ G P K +G
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIG 68
Query: 86 NIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEGNCR 145
N+HG+E +GRE++L L+E+L + D + L+ +TRIH++P++NPDG E + EG+
Sbjct: 69 NMHGNEVVGRELLLNLIEYLCKNF-GTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRG 127
Query: 146 SGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMSLQL 205
GRNN NN+DLNR FPD F + PE AV+ W+ + PFV+S L
Sbjct: 128 GTVGRNNSNNYDLNRNFPDQFF----------QVTDPPQPETLAVMSWLKTYPFVLSANL 177
Query: 206 HGGNVVASYPYD 217
HGG++V +YP+D
Sbjct: 178 HGGSLVVNYPFD 189
Score = 61.0 bits (148), Expect = 4e-10
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 211 VASYPYDSFYGESKNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNS 270
S D +NN NN+DLNR FPD F + PE AV+ W+ +
Sbjct: 119 EKSQEGDRGGTVGRNNSNNYDLNRNFPDQFF----------QVTDPPQPETLAVMSWLKT 168
Query: 271 VPFVMSLQLHGGNVVASYPYD 291
PFV+S LHGG++V +YP+D
Sbjct: 169 YPFVLSANLHGGSLVVNYPFD 189
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 243 bits (622), Expect = 3e-74
Identities = 129/393 (32%), Positives = 194/393 (49%), Gaps = 59/393 (15%)
Query: 296 ESKDLLVVNISTAP-VHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIR 354
+ ++L V+ + P H++G+P K V N+HGDE +GRE++L L++YLV D I
Sbjct: 36 KGRNLWVLVVGRFPKEHRIGIPEFKYVANMHGDETVGRELLLHLIDYLVTSD-GKDPEIT 94
Query: 355 FLLDNTRIHLLPNLNPDGSELAVEGNCRSGRGRTP------------------------- 389
L+++TRIH++P++NPDG E + +C GR
Sbjct: 95 NLINSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAFEYNNVSRQPET 154
Query: 390 ----------PFLISLFL---------PFPVTKNKPA------LTPDTDVFLHLASTYAR 424
F++S L PF LTPD DVF +LA TYA
Sbjct: 155 VAVMKWLKTETFVLSANLHGGALVASYPFDNGVQATGALYSRSLTPDDDVFQYLAHTYAS 214
Query: 425 LHPTMHMKRPCPGNTVLKFENGVTNGAAWYSFSGGMADYNYLYHGCLELTLEISCCRYPA 484
+P M C F NGVTNG +WY GGM DYNY++ C E+TLE+SCC+YP
Sbjct: 215 RNPNMKKGDECKNKM--NFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITLELSCCKYPR 272
Query: 485 PSEIPIHWRSNQNALISWLQQVHRGVKGLVLDETGSRLANVSISLA--YKNVSFMSSQRG 542
++P W +N+ +LI +++QVH GVKG V D+ G+ L NV + + + +++ G
Sbjct: 273 EEKLPSFWNNNKASLIEYIKQVHLGVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYG 332
Query: 543 EYWRVLMPGIYFIEASKEGYELFRDRIKIPESTSPVVGAVLESLLEFNITMTSIQNDKVG 602
EY+ +L+PG Y I + G++ ++ IPE + + LL F + SI V
Sbjct: 333 EYYLLLLPGSYIINVTVPGHDPHITKVIIPEKSQNFSALKKDILLPFQGQLDSIP---VS 389
Query: 603 NASKEGYELFRDRIEIPESTSPVVGAVLESLLE 635
N S L+R+ + +T P + L SLL
Sbjct: 390 NPSCPMIPLYRNLPDHSAATKPSLFLFLVSLLH 422
Score = 182 bits (464), Expect = 2e-51
Identities = 80/201 (39%), Positives = 121/201 (60%), Gaps = 12/201 (5%)
Query: 27 NYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAP-VHQLGVPNVKIVG 85
NYH + M L+ + Y+++T L+SIGKSV G++L V+ + P H++G+P K V
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVA 63
Query: 86 NIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEGNCR 145
N+HGDE +GRE++L L+++LV D I L+++TRIH++P++NPDG E + +C
Sbjct: 64 NMHGDETVGRELLLHLIDYLVTSD-GKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCY 122
Query: 146 SGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMSLQL 205
GR N N +DLNR FPD F +N + PE AV+ W+ + FV+S L
Sbjct: 123 YSIGRENYNQYDLNRNFPDAFEYNNVS----------RQPETVAVMKWLKTETFVLSANL 172
Query: 206 HGGNVVASYPYDSFYGESKNN 226
HGG +VASYP+D+ +
Sbjct: 173 HGGALVASYPFDNGVQATGAL 193
Score = 59.6 bits (144), Expect = 1e-09
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 211 VASYPYDSFYGESKNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNS 270
A D +Y + N N +DLNR FPD F +N + PE AV+ W+ +
Sbjct: 114 EAVKKPDCYYSIGRENYNQYDLNRNFPDAFEYNNVSR----------QPETVAVMKWLKT 163
Query: 271 VPFVMSLQLHGGNVVASYPYD 291
FV+S LHGG +VASYP+D
Sbjct: 164 ETFVLSANLHGGALVASYPFD 184
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 235 bits (602), Expect = 4e-71
Identities = 110/328 (33%), Positives = 166/328 (50%), Gaps = 65/328 (19%)
Query: 296 ESKDLLVVNISTAP-VHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIR 354
E ++LL + IS L P VK + N+HGDE +GR++++ + +YL+ + S++
Sbjct: 71 EGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNH-ERISDLG 129
Query: 355 FLLDNTRIHLLPNLNPDGSELAVEGNCRSGRGRTP------------------------- 389
L+++T I+L+P +NPDG L+ EGNC S
Sbjct: 130 QLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQL 189
Query: 390 -------------------PFLISL---------FLPF-----PVTKNKPALTPDTDVFL 416
PF++S P+ + +LTPD VF
Sbjct: 190 RAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFK 249
Query: 417 HLASTYARLHPTMHMKRPCPGNTVLKFENGVTNGAAWYSFSGGMADYNYLYHGCLELTLE 476
LA TY+ HP M C + F G+TNGA WY SGGM D+NY + C ELT+E
Sbjct: 250 QLAHTYSDNHPIMRKGNNCNDS----FSGGITNGAHWYELSGGMQDFNYAFSNCFELTIE 305
Query: 477 ISCCRYPAPSEIPIHWRSNQNALISWLQQVHRGVKGLVLDETGSRLANVSISLA-YKNVS 535
+SCC+YPA S +P W+ N+ +L+ L+Q H G+KGLV D +G +A+ ++ +A +
Sbjct: 306 LSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKP 365
Query: 536 FMSSQRGEYWRVLMPGIYFIEASKEGYE 563
+S+RGEYWR+L PG+Y + AS GY+
Sbjct: 366 MRTSKRGEYWRLLTPGLYSVHASAFGYQ 393
Score = 198 bits (506), Expect = 3e-57
Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 9/208 (4%)
Query: 23 MSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAP-VHQLGVPNV 81
+ +Y + + + + + Y N +++ +G+S+ G++LL + IS L P V
Sbjct: 35 LQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPV 94
Query: 82 KIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVE 141
K + N+HGDE +GR++++ + ++L+ + S++ L+++T I+L+P +NPDG L+ E
Sbjct: 95 KYIANMHGDETVGRQLLVYMAQYLLGNH-ERISDLGQLVNSTDIYLVPTMNPDGYALSQE 153
Query: 142 GNCRSG---RGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVP 198
GNC S GR N N DLNR FPD + +QS PE A+++W+ S P
Sbjct: 154 GNCESLPNYVGRGNAANIDLNRDFPDRLEQSH----VHQLRAQSRQPETAALVNWIVSKP 209
Query: 199 FVMSLQLHGGNVVASYPYDSFYGESKNN 226
FV+S HGG VVASYPYD+ ++
Sbjct: 210 FVLSANFHGGAVVASYPYDNSLAHNECC 237
Score = 64.2 bits (156), Expect = 5e-11
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 211 VASYPYDSFYG---ESKNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDW 267
S + + N N DLNR FPD + +QS PE A+++W
Sbjct: 149 ALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSH----VHQLRAQSRQPETAALVNW 204
Query: 268 MNSVPFVMSLQLHGGNVVASYPYD 291
+ S PFV+S HGG VVASYPYD
Sbjct: 205 IVSKPFVLSANFHGGAVVASYPYD 228
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 195 bits (496), Expect = 7e-56
Identities = 83/219 (37%), Positives = 118/219 (53%), Gaps = 13/219 (5%)
Query: 28 YHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAP-VHQLGVPNVKIVGN 86
+H YD + L +T +YSIG+SV G+ L V+ S P +H+ P VK VGN
Sbjct: 6 HHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVKYVGN 65
Query: 87 IHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEGNCRS 146
+HG+E +GRE++L+L E L E+ + I L+ +TRIH+LP++NPDG E+A
Sbjct: 66 MHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAAQGPNK 125
Query: 147 GR---GRNNINNHDLNRQFPDYFRH---------NRSNIPTLVSTSQSIDPEVQAVIDWM 194
GRNN N DLNR FPD + ++P + ++PE +AVI WM
Sbjct: 126 PGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEPETRAVIRWM 185
Query: 195 NSVPFVMSLQLHGGNVVASYPYDSFYGESKNNINNHDLN 233
+S FV+S LHGG VVA+YPYD + +
Sbjct: 186 HSFNFVLSANLHGGAVVANYPYDKSFEHRVRGVRRTAST 224
Score = 157 bits (398), Expect = 4e-42
Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 4/176 (2%)
Query: 404 NKPALTPDTDVFLHLASTYARLHPTMHMKRPCPGNTVLKFENGVTNGAAWYSFSGGMADY 463
TPD +F LA Y+ H M C F +G+TNGA+WYS S GM D+
Sbjct: 221 TASTPTPDDKLFQKLAKVYSYAHGWMFQGWNCGDY----FPDGITNGASWYSLSKGMQDF 276
Query: 464 NYLYHGCLELTLEISCCRYPAPSEIPIHWRSNQNALISWLQQVHRGVKGLVLDETGSRLA 523
NYL+ C E+TLE+SC ++P E+ W N+ ALI +L+QVH+G+KG+VLD+ + LA
Sbjct: 277 NYLHTNCFEITLELSCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKGMVLDQNYNNLA 336
Query: 524 NVSISLAYKNVSFMSSQRGEYWRVLMPGIYFIEASKEGYELFRDRIKIPESTSPVV 579
N IS++ N S G+Y+R+L+PGIY + A+ GY+ + + + +V
Sbjct: 337 NAVISVSGINHDVTSGDHGDYFRLLLPGIYTVSATAPGYDPETVTVTVGPAEPTLV 392
Score = 103 bits (258), Expect = 9e-24
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 296 ESKDLLVVNISTAP-VHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIR 354
E + L V+ S P +H+ P VK VGN+HG+E +GRE++L+L E+L E+ + I
Sbjct: 37 EGRHLYVLEFSDHPGIHEPLEPEVKYVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIV 96
Query: 355 FLLDNTRIHLLPNLNPDGSELAVEGNCRSGRGRTP 389
L+ +TRIH+LP++NPDG E+A
Sbjct: 97 QLIQDTRIHILPSMNPDGYEVAAAQGPNKPGYLVG 131
Score = 65.8 bits (160), Expect = 2e-11
Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 176 LVSTSQSIDPEVQAVIDWMNSVPFVMSLQLH-------GGNVVAS--YPYDSFYGESKNN 226
L ++ + + +I ++H G VA+ P Y +NN
Sbjct: 84 LCEEFRNRNQRIVQLIQ---------DTRIHILPSMNPDGYEVAAAQGPNKPGYLVGRNN 134
Query: 227 INNHDLNRQFPDYFRH---------NRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMSL 277
N DLNR FPD + ++P + ++PE +AVI WM+S FV+S
Sbjct: 135 ANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEPETRAVIRWMHSFNFVLSA 194
Query: 278 QLHGGNVVASYPYDSFYGESKDLLVVNISTA-PVHQLGVPNVKIVGNIHGDEPIG 331
LHGG VVA+YPYD + + ST P +L K+ HG G
Sbjct: 195 NLHGGAVVANYPYDKSFEHRVRGVRRTASTPTPDDKLFQKLAKVYSYAHGWMFQG 249
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 147 bits (372), Expect = 1e-39
Identities = 61/227 (26%), Positives = 95/227 (41%), Gaps = 19/227 (8%)
Query: 25 FGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPNVKIV 84
YHNY+ M ++ Y N+ + +SIGKS G++L V IS P V
Sbjct: 6 DSGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYT 65
Query: 85 GNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEGNC 144
H E + E+ L L+ Y DS I L++N I+++ N+NPDG E +
Sbjct: 66 ALHHAREHLTVEMALYTLDLFTQNY-NLDSRITNLVNNREIYIVFNINPDGGEYDISSGS 124
Query: 145 ----RSGRGRNNINNH---DLNRQFPDYFRHNR--SNIP---TLVSTSQSIDPEVQAVID 192
R R N+ +++ DLNR + + S P T S PE A+ D
Sbjct: 125 YKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRD 184
Query: 193 WMNSV------PFVMSLQLHGGNVVASYPYDSFYGESKNNINNHDLN 233
++NS + H + + YPY Y + +++ D N
Sbjct: 185 FINSRVVGGKQQIKTLITFHTYSELILYPYSYTYTDVPSDMTQDDFN 231
Score = 80.5 bits (199), Expect = 1e-16
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E ++L V IS P V H E + E+ L L+ Y DS I
Sbjct: 40 EGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNY-NLDSRITN 98
Query: 356 LLDNTRIHLLPNLNPDGSELAVEGNC 381
L++N I+++ N+NPDG E +
Sbjct: 99 LVNNREIYIVFNINPDGGEYDISSGS 124
Score = 63.5 bits (155), Expect = 4e-11
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 22/105 (20%)
Query: 409 TPDTDVFLHLASTYARLHPTMHMKRPCPGNTVLKFENGVTNGAAWYSFSGGMADYNYLYH 468
D +VF +A+T A+ + G+ Y GGM D+ Y H
Sbjct: 227 QDDFNVFKTMANTMAQTNGYTP-----------------QQGSDLYIADGGMDDWAYGQH 269
Query: 469 GCLELTLEISCCR-----YPAPSEIPIHWRSNQNALISWLQQVHR 508
T E+ YP I N+ A++ ++
Sbjct: 270 KIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADC 314
Score = 44.6 bits (106), Expect = 6e-05
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 231 DLNRQFPDYFRHNR--SNIP---TLVSTSQSIDPEVQAVIDWMNSV------PFVMSLQL 279
DLNR + + S P T S PE A+ D++NS +
Sbjct: 144 DLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDFINSRVVGGKQQIKTLITF 203
Query: 280 HGGNVVASYPYD 291
H + + YPY
Sbjct: 204 HTYSELILYPYS 215
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 110 bits (276), Expect = 5e-26
Identities = 50/227 (22%), Positives = 85/227 (37%), Gaps = 21/227 (9%)
Query: 18 RPAAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLG 77
+ +SF H+Y+ + L+ + + N+ + GKS G+ + + IST
Sbjct: 111 STRSRLSFDKIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDAS 170
Query: 78 VPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSE 137
P V + +H E + L + LV+ D L++N +LP NPDG
Sbjct: 171 KPVVMMQSLLHCREWVTLPATLYAIHKLVI-----DVTESDLINNIDWIILPVANPDGYV 225
Query: 138 LAVEGNC--RSGRGRNNINNH-----DLNRQFPDYFRHNRSNIP---TLVSTSQSIDPEV 187
G+ R R + + DLNR F + S+ T S +PE
Sbjct: 226 HTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSSVCSDTFHGRSAFSEPES 285
Query: 188 QAVIDWMNSVP--FVMSLQLHG-GNVVASYPYDSFYGESKNNINNHD 231
+ D + + L +H G+++ Y Y G +N
Sbjct: 286 SVIRDIIAEHRNRMALYLDIHSFGSMI-LYGYG--NGVLPSNALQLH 329
Score = 54.9 bits (132), Expect = 4e-08
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E + + + IST P V + +H E + L + LV+ D
Sbjct: 152 EGRSIKYLRISTTNFQDASKPVVMMQSLLHCREWVTLPATLYAIHKLVI-----DVTESD 206
Query: 356 LLDNTRIHLLPNLNPDGSELAVEGNC--RSGRGRTPPF 391
L++N +LP NPDG G+ R R
Sbjct: 207 LINNIDWIILPVANPDGYVHTFGGDRYWRKNRATGYMA 244
Score = 28.7 bits (64), Expect = 6.5
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 231 DLNRQFPDYFRHNRSNIP---TLVSTSQSIDPEVQAVIDWMNSVP--FVMSLQLHG-GNV 284
DLNR F + S+ T S +PE + D + + L +H G++
Sbjct: 252 DLNRNFGMNWGTASSSSVCSDTFHGRSAFSEPESSVIRDIIAEHRNRMALYLDIHSFGSM 311
Query: 285 VASYPY 290
+ Y Y
Sbjct: 312 I-LYGY 316
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 107 bits (268), Expect = 1e-25
Identities = 51/278 (18%), Positives = 95/278 (34%), Gaps = 26/278 (9%)
Query: 18 RPAAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLG 77
R ++ YH D + + ++ + + IG+S G+ + V+ ST ++
Sbjct: 2 RSTNTFNYATYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSNR-- 59
Query: 78 VPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSE 137
P + I IH E I + + + +Y + D + +LD+ I L NPDG
Sbjct: 60 -PAIWIDLGIHSREWITQATGVWFAKKFTEDYGQ-DPSFTAILDSMDIFLEIVTNPDGFA 117
Query: 138 LAVEGNC-----RSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSID-------- 184
N RS + D NR + F ++ S+ S
Sbjct: 118 FTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGAS-----SSPCSETYHGKYANS 172
Query: 185 -PEVQAVIDWMNSVP-FVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFR 241
EV++++D++ F L +H ++ YPY + + + + +
Sbjct: 173 EVEVKSIVDFVKDHGNFKAFLSIHSYSQLL-LYPYGYTTQSIPDKTELNQVAKSAVAALK 231
Query: 242 HNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMSLQL 279
S +I IDW + S
Sbjct: 232 SLYGTSYKYGSIITTIYQASGGSIDWSYNQGIKYSFTF 269
Score = 53.2 bits (128), Expect = 1e-07
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E + + V+ ST ++ P + I IH E I + + + +Y + D +
Sbjct: 43 EGRPIYVLKFSTGGSNR---PAIWIDLGIHSREWITQATGVWFAKKFTEDYGQ-DPSFTA 98
Query: 356 LLDNTRIHLLPNLNPDG 372
+LD+ I L NPDG
Sbjct: 99 ILDSMDIFLEIVTNPDG 115
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 108 bits (271), Expect = 1e-25
Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 25/222 (11%)
Query: 23 MSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPNVK 82
++ ++ + E L ++ + +G++V G+ + +V + T V
Sbjct: 127 YAYFEPYSEERHSEFLGAVQQMP--QASVVELGRTVEGRPMSLVVLGTPDEAGAAKKKVW 184
Query: 83 IVGNIHGDEPIGREIILRLLEHLVVEYIRGDSN-IRFLLDNTRIHLLPNLNPDGSELAVE 141
I+ H E + I L++ LV R L D+ +++PN+NPDGS
Sbjct: 185 IIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVH--- 241
Query: 142 GNCRSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVM 201
G R N +LNR++ + PEV V D ++++ +
Sbjct: 242 -----GNLRTNAAGANLNREWME--------------PDAERSPEVLVVRDAIHAIGCDL 282
Query: 202 SLQLHGGNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHN 243
+HG + F D F+
Sbjct: 283 FFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFIDSFKRA 324
Score = 89.1 bits (220), Expect = 4e-19
Identities = 41/226 (18%), Positives = 65/226 (28%), Gaps = 30/226 (13%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSN-IR 354
E + + +V + T V I+ H E + I L++ LV R
Sbjct: 161 EGRPMSLVVLGTPDEAGAAKKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVAR 220
Query: 355 FLLDNTRIHLLPNLNPDGSELAVEGNCRSG---------------------RGRTPPFLI 393
L D+ +++PN+NPDGS +G R
Sbjct: 221 KLYDHATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMEPDAERSPEVLVVRDAIHAIGC 280
Query: 394 SLFLPFPVTKNKP----ALTPDTDVFLHLASTYARLHPTMHMKRPCPGNTVLKFENGVTN 449
LF ++ P A + F + + + E+G
Sbjct: 281 DLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFIDSFKRA----SPDFQDEHGYPP 336
Query: 450 GAAWYSFSGGMADYNYLYHGCLELTLEISCCRYPAPSEIPIHWRSN 495
G + Y GCL LTLE+ + I W
Sbjct: 337 GKYREDAFKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHIGWNGA 382
Score = 39.8 bits (92), Expect = 0.003
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 28/124 (22%)
Query: 176 LVSTSQSIDPEVQAVIDWMNSVPFVMSLQLHGGNVVASYPYDSFYGESKNNINNHDLNRQ 235
+ S DP + + F + ++ +G + N +LNR+
Sbjct: 208 VGWGDWSGDPVAR---KLYDHATFYIVPNMNPDGS--------VHGNLRTNAAGANLNRE 256
Query: 236 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMSLQLHGGNVVASYPYDSFYG 295
+ + PEV V D ++++ + +HG PY G
Sbjct: 257 WME--------------PDAERSPEVLVVRDAIHAIGCDLFFDIHGD---EDLPYVFAAG 299
Query: 296 ESKD 299
Sbjct: 300 SEML 303
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 103 bits (258), Expect = 2e-24
Identities = 48/278 (17%), Positives = 97/278 (34%), Gaps = 29/278 (10%)
Query: 21 AGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPN 80
G S+ Y+N++ + + T ++ +IG + LG ++ ++ + ++ P
Sbjct: 2 TGHSYEKYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNK---PA 58
Query: 81 VKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAV 140
+ + H E I + V+ Y +S++ L+ ++LP LN DG
Sbjct: 59 IFMDCGFHAREWISHAFCQWFVREAVLTY-GYESHMTEFLNKLDFYVLPVLNIDGYIYTW 117
Query: 141 EGNC-----RSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSID---------PE 186
N RS D NR F + ++ + E
Sbjct: 118 TKNRMWRKTRSTNAGTTCIGTDPNRNFDAGWCTTGAS-----TDPCDETYCGSAAESEKE 172
Query: 187 VQAVIDWMNSV--PFVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHN 243
+A+ D++ + L +H ++ YPY Y +NN ++L +
Sbjct: 173 TKALADFIRNNLSSIKAYLTIHSYSQMI-LYPYSYDYKLPENNAELNNLAKAAVKELATL 231
Query: 244 RSNIPTLVSTSQSIDPEVQAVIDWMNS--VPFVMSLQL 279
T + +I P DW + + + +L
Sbjct: 232 YGTKYTYGPGATTIYPAAGGSDDWAYDQGIKYSFTFEL 269
Score = 54.3 bits (131), Expect = 3e-08
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
++ ++ + ++ P + + H E I + V+ Y +S++
Sbjct: 40 LGNNIYLLKVGKPGPNK---PAIFMDCGFHAREWISHAFCQWFVREAVLTY-GYESHMTE 95
Query: 356 LLDNTRIHLLPNLNPDGSE 374
L+ ++LP LN DG
Sbjct: 96 FLNKLDFYVLPVLNIDGYI 114
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 102 bits (256), Expect = 4e-24
Identities = 57/278 (20%), Positives = 104/278 (37%), Gaps = 27/278 (9%)
Query: 20 AAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVP 79
+ ++G YH+ + + E++N + ++ IG S + + V+ ST + P
Sbjct: 2 SNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGK--GVRRP 59
Query: 80 NVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELA 139
V + IH E I + + +V +Y + D I +L+ I LLP NPDG
Sbjct: 60 AVWLNAGIHSREWISQATAIWTARKIVSDY-QRDPAITSILEKMDIFLLPVANPDGYVYT 118
Query: 140 VEGNC-----RSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSID---------P 185
N RS ++ D NR + F ++ S
Sbjct: 119 QTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGKGAS-----DNPCSEVYHGPHANSEV 173
Query: 186 EVQAVIDWMNSVP-FVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHN 243
EV++V+D++ F + LH ++ YPY ++ + + R
Sbjct: 174 EVKSVVDFIQKHGNFKGFIDLHSYSQLL-MYPYGYSVKKAPDAEELDKVARLAAKALASV 232
Query: 244 RSNIPTLVSTSQSIDPEVQAVIDWM--NSVPFVMSLQL 279
+ T ++ P + IDW N + F + +L
Sbjct: 233 SGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFEL 270
Score = 52.0 bits (125), Expect = 2e-07
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E++ + V+ ST + P V + IH E I + + +V +Y + D I
Sbjct: 41 ENRPMYVLKFSTGK--GVRRPAVWLNAGIHSREWISQATAIWTARKIVSDY-QRDPAITS 97
Query: 356 LLDNTRIHLLPNLNPDGSE 374
+L+ I LLP NPDG
Sbjct: 98 ILEKMDIFLLPVANPDGYV 116
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 103 bits (258), Expect = 5e-24
Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 33/224 (14%)
Query: 23 MSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPNVK 82
++ ++ + L + ++G SV G+D+ ++ + H +
Sbjct: 120 FAYFEPYSRE-RHARLVERALGIEGVE-RLAVGTSVQGRDIELLRVRR---HPDSHLKLW 174
Query: 83 IVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEG 142
++ H E + + L+E L D+ ++ LL+ ++L+PN+NPDG
Sbjct: 175 VIAQQHPGEHMAEWFMEGLIERLQRPD---DTEMQRLLEKADLYLVPNMNPDG------- 224
Query: 143 NCRSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMS 202
G R N DLNR + + S PEV V M +
Sbjct: 225 -AFHGNLRTNAAGQDLNRAWLE--------------PSAERSPEVWFVQQEMKRHGVDLF 269
Query: 203 LQLHGGNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHNRSN 246
L +HG P+ G N L R + +
Sbjct: 270 LDIHGD---EEIPHVFAAGCEGNPGYTPRLERLEQRFREELMAR 310
Score = 92.9 bits (230), Expect = 2e-20
Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 50/226 (22%)
Query: 299 DLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLD 358
D+ ++ + H + ++ H E + + L+E L D+ ++ LL+
Sbjct: 157 DIELLRVRR---HPDSHLKLWVIAQQHPGEHMAEWFMEGLIERLQRPD---DTEMQRLLE 210
Query: 359 NTRIHLLPNLNPDGSELAVEGNCRSG-----------RGRTP------------PFLISL 395
++L+PN+NPDG+ +G R+P + L
Sbjct: 211 KADLYLVPNMNPDGAFHGNLRTNAAGQDLNRAWLEPSAERSPEVWFVQQEMKRHGVDLFL 270
Query: 396 FLPFPVTK---------NKPALTPDTDVFLHLASTYARLHPTMHMKRPCPGNTVLKFENG 446
+ P TP + ++ P + G
Sbjct: 271 DIHGDEEIPHVFAAGCEGNPGYTPRLERLEQRFREELMARGEFQIRHGYP-----RSAPG 325
Query: 447 VTNGAAWYSFSGGMADYNYLYHGCLELTLEISCCRYPAPSEIPIHW 492
N A +F G + CL T+E+ + E W
Sbjct: 326 QANLALACNFVGQT-------YDCLAFTIEMPFKDHDDNPEPGTGW 364
Score = 46.7 bits (110), Expect = 2e-05
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 17/83 (20%)
Query: 215 PYDSFYGESKNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFV 274
P +F+G + N DLNR + + S PEV V M
Sbjct: 222 PDGAFHGNLRTNAAGQDLNRAWLE--------------PSAERSPEVWFVQQEMKRHGVD 267
Query: 275 MSLQLHGGNVVASYPYDSFYGES 297
+ L +HG P+ G
Sbjct: 268 LFLDIHGD---EEIPHVFAAGCE 287
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 103 bits (258), Expect = 7e-24
Identities = 54/279 (19%), Positives = 104/279 (37%), Gaps = 27/279 (9%)
Query: 18 RPAAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLG 77
+ +FG YH + + +E++N + + +IG S + + V+ ST
Sbjct: 95 ERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG----D 150
Query: 78 VPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSE 137
P + + IH E + + L +V +Y + D +I +LD I LLP NPDG
Sbjct: 151 KPAIWLDAGIHAREWVTQATALWTANKIVSDYGK-DPSITSILDALDIFLLPVTNPDGYV 209
Query: 138 LAVEGN--CRSGRGRNNINN---HDLNRQFPDYFRHNRSNIPTLVSTSQSID-------- 184
+ N R R + + + D NR + F ++ S S
Sbjct: 210 FSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGGPGAS-----SNPCSDSYHGPSANS 264
Query: 185 -PEVQAVIDWMNSV-PFVMSLQLHGGNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRH 242
EV++++D++ S + LH + + +PY + + ++ ++ R
Sbjct: 265 EVEVKSIVDFIKSHGKVKAFIILHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRS 324
Query: 243 NRSNIPTLVSTSQSIDPEVQAVIDWM--NSVPFVMSLQL 279
+ I IDW + + + +L
Sbjct: 325 LHGTKYKVGPICSVIYQASGGSIDWSYDYGIKYSFAFEL 363
Score = 50.9 bits (122), Expect = 6e-07
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E++ + V+ ST P + + IH E + + L +V +Y + D +I
Sbjct: 136 ENRPMNVLKFSTGG----DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGK-DPSITS 190
Query: 356 LLDNTRIHLLPNLNPDGSELAVEGN 380
+LD I LLP NPDG + N
Sbjct: 191 ILDALDIFLLPVTNPDGYVFSQTKN 215
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 100 bits (252), Expect = 1e-23
Identities = 59/278 (21%), Positives = 104/278 (37%), Gaps = 24/278 (8%)
Query: 20 AAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVP 79
A+ + YH+ + + +E T Y +M E IG S L V+ +S Q
Sbjct: 1 ASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKE--QRAKN 58
Query: 80 NVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELA 139
+ I IH E I L + + Y + LL + +++P +N DG +
Sbjct: 59 AMWIDCGIHAREWISPAFCLWFVGSVTYYY-GKEKMHTNLLKHMDFYIMPVVNVDGYDYT 117
Query: 140 VEGNC-----RSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQS-------IDPEV 187
+ + RS +N DLNR F +H + S S+ +PEV
Sbjct: 118 WKKDRMWRKNRSLHEKNACVGTDLNRNFA--SKHWCGEGASSSSCSEIYCGTYPESEPEV 175
Query: 188 QAVIDWMNSV--PFVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHNR 244
+AV D++ + +H + +PY SK++ + R+ +
Sbjct: 176 KAVADFLRRNIKHIKAYISMHSYSQKI-VFPYSYSRSRSKDHEELSLVAREAVFAMENIH 234
Query: 245 SNIPTLV-STSQSIDPEVQAVIDWM--NSVPFVMSLQL 279
NI S S+S+ DW+ + + + +L
Sbjct: 235 RNIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFEL 272
Score = 54.0 bits (130), Expect = 6e-08
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E L V+ +S Q + I IH E I L + + Y +
Sbjct: 40 EKYPLYVLKVSKKE--QRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYY-GKEKMHTN 96
Query: 356 LLDNTRIHLLPNLNPDG 372
LL + +++P +N DG
Sbjct: 97 LLKHMDFYIMPVVNVDG 113
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 102 bits (256), Expect = 1e-23
Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 31/231 (13%)
Query: 18 RPAAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLG 77
A G S+ Y+ ++ + + + IG + G+ + ++ + A ++
Sbjct: 94 VRATGHSYEKYNKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQNK-- 151
Query: 78 VPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSE 137
P + + H E I + V Y + + LL+ ++LP LN DG
Sbjct: 152 -PAIFMDCGFHAREWISPAFCQWFVREAVRTY-GREIQVTELLNKLDFYVLPVLNIDGYI 209
Query: 138 LAVEGNC-----RSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSID-------- 184
+ RS ++ D NR F + ++
Sbjct: 210 YTWTKSRFWRKTRSTHTGSSCIGTDPNRNFDAGWCEIGAS-----RNPCDETYCGPAAES 264
Query: 185 -PEVQAVIDWMNSVP--FVMSLQLHG-GNVVASYPYDSFYGESKNNINNHD 231
E +A+ D++ + L +H ++ YP Y + N+
Sbjct: 265 EKETKALADFIRNKLSSIKAYLTIHSYSQMM-IYP----YSYAYKLGENNA 310
Score = 52.1 bits (125), Expect = 3e-07
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E + + ++ + A ++ P + + H E I + V Y + +
Sbjct: 135 EGRAIYLLKVGKAGQNK---PAIFMDCGFHAREWISPAFCQWFVREAVRTY-GREIQVTE 190
Query: 356 LLDNTRIHLLPNLNPDGSELAVEGNC 381
LL+ ++LP LN DG +
Sbjct: 191 LLNKLDFYVLPVLNIDGYIYTWTKSR 216
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 100 bits (252), Expect = 1e-23
Identities = 59/279 (21%), Positives = 101/279 (36%), Gaps = 29/279 (10%)
Query: 23 MSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPNVK 82
+ + NY +++ E L+ Y ++ + + +S G+ + + IST P +
Sbjct: 1 LPYDNYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDENKPVIF 60
Query: 83 IVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEG 142
I G IH E I + + LV + LL+ LLP +NPDG +
Sbjct: 61 IDGGIHAREWISPPSVTWAIHKLVEDV-----TENDLLEKFDWILLPVVNPDGYKYTFTN 115
Query: 143 NCRSGRG-RNNINNH--------DLNRQFPDYFRHNR-SNIP---TLVSTSQSIDPEVQA 189
R R R+ NN D NR F + SN P TS + E +
Sbjct: 116 E-RFWRKTRSTNNNPLSQICRGADGNRNFDFVWNSIGTSNSPCSDIYAGTSAFSEVETRV 174
Query: 190 VIDWMNS--VPFVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHNRSN 246
V D ++ + L +H G+++ YP+ S+N + H + + N
Sbjct: 175 VRDILHEHLARMALYLTMHSFGSMI-LYPWGHDGSLSQNALGLHTVGVAMASVIQSNALP 233
Query: 247 IPTLVSTSQSIDPEVQAV----IDWM--NSVPFVMSLQL 279
+ S + D+ VP + +L
Sbjct: 234 NFPPYTVGNSALVIGYYIAGSSEDYAHSIGVPLSYTYEL 272
Score = 53.1 bits (128), Expect = 9e-08
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E + + + IST P + I G IH E I + + LV +
Sbjct: 37 EGRPIKYIKISTTNFEDENKPVIFIDGGIHAREWISPPSVTWAIHKLVEDV-----TEND 91
Query: 356 LLDNTRIHLLPNLNPDGSE 374
LL+ LLP +NPDG +
Sbjct: 92 LLEKFDWILLPVVNPDGYK 110
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 102 bits (255), Expect = 2e-23
Identities = 58/280 (20%), Positives = 105/280 (37%), Gaps = 27/280 (9%)
Query: 18 RPAAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLG 77
R + ++G YH+ + + E++N + ++ IG S + + V+ ST +
Sbjct: 96 RSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRR- 154
Query: 78 VPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSE 137
P V + IH E I + + +V +Y + D I +L+ I LLP NPDG
Sbjct: 155 -PAVWLNAGIHSREWISQATAIWTARKIVSDY-QRDPAITSILEKMDIFLLPVANPDGYV 212
Query: 138 LAVEGN-----CRSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSID-------- 184
N RS ++ D NR + F ++ S
Sbjct: 213 YTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGKGAS-----DNPCSEVYHGPHANS 267
Query: 185 -PEVQAVIDWMNSVP-FVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFR 241
EV++V+D++ F + LH ++ YPY ++ + + R
Sbjct: 268 EVEVKSVVDFIQKHGNFKGFIDLHSYSQLL-MYPYGYSVKKAPDAEELDKVARLAAKALA 326
Query: 242 HNRSNIPTLVSTSQSIDPEVQAVIDWM--NSVPFVMSLQL 279
+ T ++ P + IDW N + F + +L
Sbjct: 327 SVSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFEL 366
Score = 50.2 bits (120), Expect = 1e-06
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E++ + V+ ST + P V + IH E I + + +V +Y + D I
Sbjct: 137 ENRPMYVLKFSTGKGVRR--PAVWLNAGIHSREWISQATAIWTARKIVSDY-QRDPAITS 193
Query: 356 LLDNTRIHLLPNLNPDGSELAVEGN 380
+L+ I LLP NPDG N
Sbjct: 194 ILEKMDIFLLPVANPDGYVYTQTQN 218
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 101 bits (253), Expect = 3e-23
Identities = 48/280 (17%), Positives = 98/280 (35%), Gaps = 28/280 (10%)
Query: 18 RPAAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLG 77
R + ++ YH + + + ++ + + IG+S G+ + V+ ST ++
Sbjct: 97 RTTSTFNYATYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSNR-- 154
Query: 78 VPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSE 137
P + I IH E I + + + + Y +S+ +LD+ I L NP+G
Sbjct: 155 -PAIWIDSGIHSREWITQASGVWFAKKITENY-GQNSSFTAILDSMDIFLEIVTNPNGFA 212
Query: 138 LAVEGNC-----RSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSID-------- 184
N RS + D NR + F ++ S+ +
Sbjct: 213 FTHSDNRLWRKTRSKASGSLCVGSDSNRNWDAGFGGAGAS-----SSPCAETYHGKYPNS 267
Query: 185 -PEVQAVIDWMNS-VPFVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFR 241
EV+++ D++ + + +H ++ YPY + + + + +
Sbjct: 268 EVEVKSITDFVKNNGNIKAFISIHSYSQLL-LYPYGYKTQSPADKSELNQIAKSAVAALK 326
Query: 242 HNRSNIPTLVSTSQSIDPEVQAVIDWM--NSVPFVMSLQL 279
S I VIDW + + S +L
Sbjct: 327 SLYGTSYKYGSIITVIYQASGGVIDWTYNQGIKYSFSFEL 366
Score = 51.7 bits (124), Expect = 4e-07
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E + + V+ ST ++ P + I IH E I + + + + Y +S+
Sbjct: 138 EGRPIYVLKFSTGGSNR---PAIWIDSGIHSREWITQASGVWFAKKITENY-GQNSSFTA 193
Query: 356 LLDNTRIHLLPNLNPDGSELAVEGN 380
+LD+ I L NP+G N
Sbjct: 194 ILDSMDIFLEIVTNPNGFAFTHSDN 218
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 98.6 bits (246), Expect = 8e-23
Identities = 53/275 (19%), Positives = 101/275 (36%), Gaps = 30/275 (10%)
Query: 24 SFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPNVKI 83
+FG YH + + +E++N + + +IG S + + V+ ST P + +
Sbjct: 2 NFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG----DKPAIWL 57
Query: 84 VGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEGN 143
IH E + + L +V +Y D +I +LD I LLP NPDG + N
Sbjct: 58 DAGIHAREWVTQATALWTANKIVSDY-GKDPSITSILDALDIFLLPVTNPDGYVFSQTKN 116
Query: 144 C--RSGRGRNNINNH----DLNRQFPDYFRHNRSNIPTLVSTSQSID---------PEVQ 188
R R + + + D NR + F ++ S S EV+
Sbjct: 117 RMWRKTRSKVSAGSLCVGVDPNRNWDAGFGGPGAS-----SNPCSDSYHGPSANSEVEVK 171
Query: 189 AVIDWMNSVP-FVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHNRSN 246
+++D++ S + LH ++ +PY + + ++ ++
Sbjct: 172 SIVDFIKSHGKVKAFIILHSYSQLL-MFPYGYKCTKLDDFDELSEVAQKAAQSLSRLHGT 230
Query: 247 IPTLVSTSQSIDPEVQAVIDWMNS--VPFVMSLQL 279
+ I IDW + + + +L
Sbjct: 231 KYKVGPICSVIYQASGGSIDWSYDYGIKYSFAFEL 265
Score = 51.6 bits (124), Expect = 3e-07
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E++ + V+ ST P + + IH E + + L +V +Y D +I
Sbjct: 37 ENRPMNVLKFSTGG----DKPAIWLDAGIHAREWVTQATALWTANKIVSDY-GKDPSITS 91
Query: 356 LLDNTRIHLLPNLNPDG 372
+LD I LLP NPDG
Sbjct: 92 ILDALDIFLLPVTNPDG 108
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 97.2 bits (242), Expect = 8e-22
Identities = 59/280 (21%), Positives = 104/280 (37%), Gaps = 24/280 (8%)
Query: 18 RPAAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLG 77
A+ + YH+ + + +E T Y +M E IG S L V+ +S Q
Sbjct: 91 PRASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKE--QRA 148
Query: 78 VPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSE 137
+ I IH E I L + + Y + LL + +++P +N DG +
Sbjct: 149 KNAMWIDCGIHAREWISPAFCLWFVGSVTYYY-GKEKMHTNLLKHMDFYIMPVVNVDGYD 207
Query: 138 LAVEGNC-----RSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQS-------IDP 185
+ + RS +N DLNR F +H + S S+ +P
Sbjct: 208 YTWKKDRMWRKNRSLHEKNACVGTDLNRNFA--SKHWCGEGASSSSCSEIYCGTYPESEP 265
Query: 186 EVQAVIDWMNSV--PFVMSLQLHG-GNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRH 242
EV+AV D++ + +H + +PY SK++ + R+ +
Sbjct: 266 EVKAVADFLRRNIKHIKAYISMHSYSQKI-VFPYSYSRSRSKDHEELSLVAREAVFAMEN 324
Query: 243 NRSNIPTLV-STSQSIDPEVQAVIDWM--NSVPFVMSLQL 279
NI S S+S+ DW+ + + + +L
Sbjct: 325 IHRNIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFEL 364
Score = 50.6 bits (121), Expect = 8e-07
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 296 ESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRF 355
E L V+ +S Q + I IH E I L + + Y +
Sbjct: 132 EKYPLYVLKVSKKE--QRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYY-GKEKMHTN 188
Query: 356 LLDNTRIHLLPNLNPDGSELAVEGN 380
LL + +++P +N DG + + +
Sbjct: 189 LLKHMDFYIMPVVNVDGYDYTWKKD 213
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 83.3 bits (205), Expect = 6e-18
Identities = 39/241 (16%), Positives = 63/241 (26%), Gaps = 48/241 (19%)
Query: 297 SKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFL 356
S D +N+ + + +P++ I HG+E G +L L L
Sbjct: 48 SVDSFAINLYQSASQRSDLPSLLISSGFHGEEAAGPWGMLHFLRGLQPAL---------- 97
Query: 357 LDNTRIHLLPNLNPDGSELAVEGN----------CRSGRGRTPPFLISLFLPFPVTKNKP 406
+ + LLP +NP G + N TP SL + +
Sbjct: 98 FERVNLSLLPLVNPTGFKAGHRFNRFGENPNRGFTLENGKPTPNEHTSLEGKLLLEHAQL 157
Query: 407 ALTPDTDVFLHLASTYAR-------LHPTMHMKRPCPG------------NTVLKFENGV 447
D L PT R G E V
Sbjct: 158 LCAASRDGILTCHEDVLMNETYVYSFEPTQTPGRFSLGLRDALGQYFKLAKDGFIDECPV 217
Query: 448 TNGAAWYSFSGGMADYNYLYHGCLELTLEISCCRYPAPSEIPIH--WRSNQNALISWLQQ 505
T+G + F + L E P + ++N A+ ++
Sbjct: 218 TDGVIFNHFDTSFEAFLVRSGAKLAACSE-------TPGQEDFDRRVQANSAAMGQFIAH 270
Query: 506 V 506
Sbjct: 271 C 271
Score = 79.5 bits (195), Expect = 1e-16
Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 28/189 (14%)
Query: 29 HNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPNVKIVGNIH 88
+ + + + SV + + ++ + +P++ I H
Sbjct: 20 CQSNDIDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSAS---QRSDLPSLLISSGFH 76
Query: 89 GDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEGNCRSGR 148
G+E G +L L L + + LLP +NP G +
Sbjct: 77 GEEAAGPWGMLHFLRGLQPAL----------FERVNLSLLPLVNPTGFKAGH-------- 118
Query: 149 GRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMSLQLH-G 207
R N + NR F + PT + + + + L H
Sbjct: 119 -RFNRFGENPNRGFT-----LENGKPTPNEHTSLEGKLLLEHAQLLCAASRDGILTCHED 172
Query: 208 GNVVASYPY 216
+ +Y Y
Sbjct: 173 VLMNETYVY 181
Score = 28.2 bits (62), Expect = 8.7
Identities = 14/141 (9%), Positives = 35/141 (24%), Gaps = 13/141 (9%)
Query: 187 VQAVIDWMNSVPFVMSLQLHGGNVVASYP---YDSFYGESKNNINNHDLNRQFPDYFRHN 243
++ ++ + N+ P F + N + NR F
Sbjct: 83 PWGMLHFLRGL---QPALFERVNLSL-LPLVNPTGFKAGHRFNRFGENPNRGFT-----L 133
Query: 244 RSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMSLQLH-GGNVVASYPYDSFYGESKDLLV 302
+ PT + + + + L H + +Y Y ++
Sbjct: 134 ENGKPTPNEHTSLEGKLLLEHAQLLCAASRDGILTCHEDVLMNETYVYSFEPTQTPGRFS 193
Query: 303 VNISTAPVHQLGVPNVKIVGN 323
+ + A + +
Sbjct: 194 LGLRDALGQYFKLAKDGFIDE 214
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 80.1 bits (197), Expect = 8e-17
Identities = 31/224 (13%), Positives = 58/224 (25%), Gaps = 44/224 (19%)
Query: 314 GVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGS 373
G+PN+ I HG+E G +L L L E + +LP +NP G
Sbjct: 64 GLPNLLISAGFHGEESAGPWGLLHFLSQLDGEL----------FKRVNLSVLPLVNPTGF 113
Query: 374 EL--------------AVEGNCRSGRGRTPPFLISLFLPFPVTKNKPALTPDTDVFLHLA 419
N ++ G + L + +
Sbjct: 114 AKGHRFNELGENPNRGFFIENGKAKPGADTSAEGRILLEHAHLLQVASRDGILTCHEDVL 173
Query: 420 STYARLHPTMHMKRP--------------CPGNTVLKFEN-GVTNGAAWYSFSGGMADYN 464
T ++ + P P +N V +G + F +
Sbjct: 174 MTDTYVYTFEPSQAPGRFSHSLRDALGQYFPIAADGDVDNCPVRSGVIFNHFDTSFESFL 233
Query: 465 YLYHGCLELTLEISCCRYPAPSEIPIHWRSNQNALISWLQQVHR 508
+ E P + +N A+ +++ +
Sbjct: 234 VRSGARVGCCSET-----PGQQPLDQRILANAAAMNTFVNMLAP 272
Score = 71.7 bits (175), Expect = 6e-14
Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 25/172 (14%)
Query: 36 EELENFTRVYANMTELYSIGKSVLGK-DLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIG 94
+++ F + A TE +G +LG+ + + +P + G+PN+ I HG+E G
Sbjct: 22 TDIQRFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAGLPNLLISAGFHGEESAG 81
Query: 95 REIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEGNCRSGRGRNNIN 154
+L L L E + +LP +NP G R N
Sbjct: 82 PWGLLHFLSQLDGEL----------FKRVNLSVLPLVNPTGFAK---------GHRFNEL 122
Query: 155 NHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMSLQLH 206
+ NR F N P ++++ + + L H
Sbjct: 123 GENPNRGFF---IENGKAKPGADTSAEGR--ILLEHAHLLQVASRDGILTCH 169
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 81.0 bits (199), Expect = 2e-16
Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 36/224 (16%)
Query: 23 MSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPNVK 82
+++ ++Y+ + + + +G ++ G+D+ +V + ++
Sbjct: 125 IAYFTPYSYERHLDLISAVQ--LHPLVSTEHLGLTLDGRDMTLVKVGD---DDPSKKSIW 179
Query: 83 IVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEG 142
I H E + ++ LL L+ + LLD +++PN+NPDG
Sbjct: 180 ITARQHPGETMAEWLVEGLLNQLLDND---CPTSKALLDKANFYIVPNMNPDG------- 229
Query: 143 NCRSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVMS 202
G R N +LNR++ S PEV V++ M+ +
Sbjct: 230 -SVRGHLRTNAVGANLNREWQTP--------------SLERSPEVYYVVNKMHETGVDLF 274
Query: 203 LQLHGGNVVASYPYDSFYGESKNNINNH---DLNRQFPDYFRHN 243
+HG PY G + L + F
Sbjct: 275 YDVHGD---EGLPYVFLAGCEGIPNYSDKLASLQQDFVAALSLA 315
Score = 55.9 bits (134), Expect = 2e-08
Identities = 36/252 (14%), Positives = 71/252 (28%), Gaps = 49/252 (19%)
Query: 295 GESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIR 354
G + D + + ++ I H E + ++ LL L+ +
Sbjct: 155 GLTLDGRDMTLVKVGDDDPSKKSIWITARQHPGETMAEWLVEGLLNQLLDND---CPTSK 211
Query: 355 FLLDNTRIHLLPNLNPDGSELAVEGNCRSG----RGRTPPFL-----------------I 393
LLD +++PN+NPDGS G R P L +
Sbjct: 212 ALLDKANFYIVPNMNPDGSVRGHLRTNAVGANLNREWQTPSLERSPEVYYVVNKMHETGV 271
Query: 394 SLFLPFPVTKNKP--------ALTPDTDVFLHLASTYARLHPTMHMKRPCPGNTVLKFEN 445
LF + P + +D L + + + E
Sbjct: 272 DLFYDVHGDEGLPYVFLAGCEGIPNYSDKLASLQQDFVAA-----LSLASA---DFQTEF 323
Query: 446 GVTNGAAWYSFSGGMADYNYLYHGCLELTLEISCCRYPAPSEIPIHW---------RSNQ 496
G + ++ CL TLE+ ++ W ++
Sbjct: 324 GYDKDEPGKANLTVACNWVANTFKCLSNTLEMPFKDNANLADPFQGWSPERSVYFGEASL 383
Query: 497 NALISWLQQVHR 508
A+ + + ++ +
Sbjct: 384 IAMRAVIDKIGQ 395
Score = 32.1 bits (72), Expect = 0.58
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 215 PYDSFYGESKNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFV 274
P S G + N +LNR++ S PEV V++ M+
Sbjct: 227 PDGSVRGHLRTNAVGANLNREWQTP--------------SLERSPEVYYVVNKMHETGVD 272
Query: 275 MSLQLHGGNVVASYPYDSFYG 295
+ +HG PY G
Sbjct: 273 LFYDVHGD---EGLPYVFLAG 290
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 2e-10
Identities = 56/436 (12%), Positives = 120/436 (27%), Gaps = 133/436 (30%)
Query: 277 LQLHGGNVVASYPYDSFYGESKDLLVVNISTAPVHQLGVPNVK-IVGNIHGDEPIGREII 335
Q ++++ + D+F + ++ P L + I+
Sbjct: 14 HQYQYKDILSVF-EDAF---VDNFDCKDVQDMPKSILSKEEIDHIIM-----SKDAVSGT 64
Query: 336 LRLLEYL------VVEYIRGDS---NIRFLLDNTRIHLLPNLNPDGSELAVEGNCRSGRG 386
LRL L +V+ + N +FL+ I + + +E R
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIE--QRDRLY 120
Query: 387 RTPPFLISLFLPFPVTKNKP---------ALTPDTDVFLH---------LASTYARLHPT 428
+F + V++ +P L P +V + +A +
Sbjct: 121 NDNQ----VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 429 MHMKRPCPGNTVLKFENGVTNGAAWYSFS------GGMADYNYLYHGCLELTLEISCCRY 482
K + + W + + L + ++ +
Sbjct: 177 -----------QCKMDFKI----FWLNLKNCNSPETVLEMLQKLLY-----QIDPNWTSR 216
Query: 483 P-APSEIPIHWRSNQNALISWLQQVHRGVKGL-VLDETGSRLANVS-------------- 526
S I + S Q L L + L VL NV
Sbjct: 217 SDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLL-------NVQNAKAWNAFNLSCKI 268
Query: 527 -ISLAYKNVS-FMSSQRGEYWRVLMPGIYFIEASKEGYELFRDRIKI-----PE---STS 576
++ +K V+ F+S+ + + + E L + P +T+
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 577 PVVGAVL-ESLLEFNITMT---SIQNDKVGNA------------SKEGYE---LFRDRIE 617
P +++ ES+ + T + DK+ ++ ++ +F
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 618 IPESTSPVVGAVLESL 633
IP +L +
Sbjct: 387 IPT-------ILLSLI 395
Score = 56.4 bits (135), Expect = 3e-08
Identities = 90/641 (14%), Positives = 179/641 (27%), Gaps = 149/641 (23%)
Query: 27 NYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPV-HQLGVPNVKIVG 85
Y D++ + F + + + +D+ +S + H + +
Sbjct: 15 QYQYKDILSVFEDAFVDNF----DCKDV------QDMPKSILSKEEIDHIIMSKDA---- 60
Query: 86 NIHGDEPIGR--EIILRLLEHLVVEYIRG--DSNIRFLLDNTRIHLLPNLNPDGSELAVE 141
R +L E +V +++ N +FL+ I + + +E
Sbjct: 61 ----VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIE 114
Query: 142 GNCRSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMN----SV 197
R+ + N N+ F Y L + P +ID + +
Sbjct: 115 -------QRDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 198 PFVMSLQLHGGNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSI 257
+ + V + F+ KN + + N + S +I
Sbjct: 166 VALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 258 DPEVQAVIDW----MNSVPFVMSLQLHGGNVVASYPYDSFYGESKDLLVVNISTAPVHQL 313
+ ++ + S P+ L L NV + +++F K +L+ L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCK-ILLTTRFKQVTDFL 281
Query: 314 GVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGS 373
+ H + + + LL +++L + R LP
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLL-------------LKYL--DCRPQDLP------- 319
Query: 374 ELAVEGNCRSGRGRTPPFLISLFLPFPVTKNKPA-----LTPDTDVFLH-LASTYARLHP 427
+ N P +S+ ++ A + D + S+ L P
Sbjct: 320 REVLTTN---------PRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 428 TMHMKRPCPGNTVLKFENGV-----TNGAAWY--SFSGGMADYNYLYHGCLELTLEISCC 480
+ R + F W+ S M N L+ L +E
Sbjct: 369 AEY--RKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VE---- 418
Query: 481 RYPAPSEIPIH-----WRSNQNALISWLQQVHRGVKGLVLDETGSRLANVSISLAYKNVS 535
+ P S I I + +HR + + + +I + +
Sbjct: 419 KQPKESTISIPSIYLELKVKLEN----EYALHRSI-----------VDHYNIPKTFDSDD 463
Query: 536 FMSSQRGEYWRVLMPGIYF--------IEASKEGYELFRD--------RIKIPESTSP-- 577
+ +Y+ Y IE + LFR KI ++
Sbjct: 464 LIPPYLDQYF-------YSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 578 VVGAVLESLLEFNITMTSIQ-NDKVGNASKEGYELFRDRIE 617
G++L +L + I ND F +IE
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Score = 55.2 bits (132), Expect = 6e-08
Identities = 81/502 (16%), Positives = 155/502 (30%), Gaps = 162/502 (32%)
Query: 10 LQTALVLLRPAA-----GMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLL 64
L+ AL+ LRPA G+ G GK+ + D+
Sbjct: 140 LRQALLELRPAKNVLIDGV-LG---------------------------SGKTWVALDVC 171
Query: 65 VVNISTAPVHQLGVPNVKI----VGNIHGDEPIGREIILRLLEHLVVEY-IRGD--SNIR 117
+ V + KI + N + E + E++ +LL + + R D SNI+
Sbjct: 172 ----LSYKVQC--KMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 118 FLLDNTRIHL---------------LPNLNPDGSEL-AVEGNCR---SGRGRNNINNHDL 158
+ + + L L N+ + A +C+ + R +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVT----- 278
Query: 159 NRQFPDYFRHNRSNIPTLVSTSQSIDPE--VQAVIDWMNSV------------PFVMSL- 203
D+ + +L S ++ P+ ++ +++ P +S+
Sbjct: 279 -----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 204 --QLHGGNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRHN---------RSNIPTLVS 252
+ G + + I LN P +R ++IPT++
Sbjct: 334 AESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 253 T---SQSIDPEVQAVI-----------DWMNSVPFVMSLQ------------LHGGNVVA 286
+ I +V V+ S + S+ LH ++V
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVD 451
Query: 287 SYPYDSFYGESKDLLVVNISTAPVHQLGVPNVKIVGNIH--GDEPIGREIILRLLEYLVV 344
Y + +S DL+ + +G H E R + R++ +L
Sbjct: 452 HYNIPKTF-DSDDLIPPYLDQYFYSHIGH---------HLKNIEHPERMTLFRMV-FL-- 498
Query: 345 EYIRGDSNIRFLLDNTRIHLLPNLNPDGSELAVEGNCRSGRGR----TPPF--LISLFLP 398
+ RF L+ H N GS L + + P + L++ L
Sbjct: 499 -------DFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 399 F-PVTKNKPALTPDTDVFLHLA 419
F P + + TD+ L +A
Sbjct: 551 FLPKIEENLICSKYTDL-LRIA 571
Score = 47.5 bits (112), Expect = 1e-05
Identities = 85/602 (14%), Positives = 171/602 (28%), Gaps = 191/602 (31%)
Query: 30 NYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVV---NISTA-PVHQLGV------P 79
NY + ++ R + MT +Y + L D V N+S P +L P
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 80 NVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSELA 139
++ I G G+ + ++ ++ +D +I L NL
Sbjct: 150 AKNVL--IDGVLGSGKTW-------VALDVCL-SYKVQCKMDF-KIFWL-NL-------- 189
Query: 140 VEGNCRSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQAVIDWMNSVPF 199
NC S P+ + + L IDP + D +++
Sbjct: 190 --KNCNS----------------PE------TVLEMLQKLLYQIDPNWTSRSDHSSNIK- 224
Query: 200 VMSLQLHGGNVVASYPYDSFYGESKNNINNHDLNRQFP---------------DYFRHNR 244
L++H + + ++ + + F
Sbjct: 225 ---LRIH---------------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---- 262
Query: 245 SNI--PTLVSTSQSIDPEVQAVIDWMNSVPFVMSLQLHGGNVVASYPYDSFY-GESKDLL 301
N+ L++T V D++++ ++ + + E K LL
Sbjct: 263 -NLSCKILLTTRFK------QVTDFLSAA--------TTTHISLDHHSMTLTPDEVKSLL 307
Query: 302 --VVNISTA--PVHQLGV-P-NVKIVGNIHGDEPIG------------REIILRLLEYLV 343
++ P L P + I+ D II L L
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 344 VEYIRGDSNIRF-----LLDNTRI--HLL----PNLNPDGSELAVEGNCRSG--RGRTPP 390
R F + I LL ++ + V + +
Sbjct: 368 PAEYRK----MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 391 FLISLFLPFPVTKNKPALTPDTDVFLH--LASTYARLHPTMHMKRPCPGNTVLKFENGVT 448
IS+ + K K + + LH + Y K + + + +
Sbjct: 424 STISIPSIYLELKVK----LENEYALHRSIVDHYNIP------KTFDSDDLIPPYLDQ-- 471
Query: 449 NGAAWYSFSGGMADYNYL-YH-GCLELTLEISCCRYPAPSEIPIHWRSNQNALISWLQQV 506
Y Y+++ +H +E ++ R + + +R +L+Q
Sbjct: 472 -----YF-------YSHIGHHLKNIEHPERMTLFR-----MVFLDFR--------FLEQK 506
Query: 507 HRGVKGLVLDETGSRLANVSISLAYKNVSFMSSQRGEYWRVLMPGIYFIEASKEGYELFR 566
R + +GS L + YK ++ +Y R++ + F+ K L
Sbjct: 507 IRHD-STAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLP--KIEENLIC 561
Query: 567 DR 568
+
Sbjct: 562 SK 563
Score = 37.1 bits (85), Expect = 0.021
Identities = 34/227 (14%), Positives = 71/227 (31%), Gaps = 67/227 (29%)
Query: 10 LQTALVLLRPAAGMSFGNYHNYDLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNIS 69
L ++ + + Y ++ +LEN ++ ++ + Y+I K+ DL+ +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 70 TAPVHQLGVPNVKIVGNIH--GDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHL 127
+G H E R + R++ ++ + RF L+ H
Sbjct: 471 QYFYSHIGH---------HLKNIEHPERMTLFRMV------FL----DFRF-LEQKIRHD 510
Query: 128 LPNLNPDGSELAVEGNCRSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEV 187
N GS L + +Q Y + N P + V
Sbjct: 511 STAWNASGSIL------------------NTLQQLKFYKPYICDNDPKY-------ERLV 545
Query: 188 QAVIDWMNSVPFVMSLQLHGGNVVAS-----------YPYDSFYGES 223
A++D F+ N++ S ++ + E+
Sbjct: 546 NAILD------FLPK---IEENLICSKYTDLLRIALMAEDEAIFEEA 583
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 47.6 bits (112), Expect = 8e-06
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 79 PNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSEL 138
P+V I N+HG E G +I +L++ L + G I L+P NP G
Sbjct: 34 PSVYIQANVHGAEVQGNAVIYQLMKLLEHYELLG-----------DISLVPLANPLGIN- 81
Query: 139 AVEGNCRSGRGRNNINNHDLNRQFPDY 165
G GR + I + NR++ D+
Sbjct: 82 QKSGEFTLGR-FDPITGVNWNREYLDH 107
Score = 37.2 bits (85), Expect = 0.013
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 316 PNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDG 372
P+V I N+HG E G +I +L++ L + G I L+P NP G
Sbjct: 34 PSVYIQANVHGAEVQGNAVIYQLMKLLEHYELLG-----------DISLVPLANPLG 79
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 47.2 bits (111), Expect = 9e-06
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 79 PNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSEL 138
P V + G +HGDE G+ I L L E ++G R+ +LP +N +
Sbjct: 54 PTVLLTGGVHGDEYEGQIAISDLARRLRPEEVQG-----------RVIMLPAVNMPAIQ- 101
Query: 139 AVEGNCRSGRGRNNINNHDLNRQFPD 164
R + ++ D+NR FP
Sbjct: 102 ------SDTR-LSPVDGRDINRCFPG 120
Score = 39.9 bits (92), Expect = 0.002
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 316 PNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDG 372
P V + G +HGDE G+ I L L E ++G R+ +LP +N
Sbjct: 54 PTVLLTGGVHGDEYEGQIAISDLARRLRPEEVQG-----------RVIMLPAVNMPA 99
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 45.2 bits (106), Expect = 3e-05
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 19/86 (22%)
Query: 79 PNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSEL 138
+ G HGDE G + L E + G R+ ++P N
Sbjct: 50 KTALLTGANHGDEYEGPVALQELAATTRAEDVTG-----------RLIIVPYFNYPA--- 95
Query: 139 AVEGNCRSGRGRNNINNHDLNRQFPD 164
R+ + I+ +LNR FP
Sbjct: 96 -----FRASARTSPIDRGNLNRAFPG 116
Score = 36.4 bits (83), Expect = 0.027
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 316 PNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLL 357
+ G HGDE G + L E + G I
Sbjct: 50 KTALLTGANHGDEYEGPVALQELAATTRAEDVTGRLIIVPYF 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 9e-05
Identities = 86/588 (14%), Positives = 148/588 (25%), Gaps = 212/588 (36%)
Query: 32 DLMREELENFTRVYANMTELYSIGKSVLGKDLLVVNISTAPVHQLGVPNVKIVGNIHGDE 91
++ L F Y + G D +H L + +
Sbjct: 82 QVLNLCLTEFENCY------------LEGND----------IHAL-------AAKLLQEN 112
Query: 92 PIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSEL---AVEGNCR--- 145
L+++ YI R + P S L EGN +
Sbjct: 113 DTTLVKTKELIKN----YITA----RIMAKR------PFDKKSNSALFRAVGEGNAQLVA 158
Query: 146 --SGRGRNNINNH--DLNRQFPDY-------FRHNRSNIPTLVSTSQSIDPEVQAVID-- 192
G+G N +++ +L + Y + + + L+ T+ + ++
Sbjct: 159 IFGGQG--NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 193 -WMN----------------SVPFVMSLQLHGGNVVASYPYDSFYGESKNNINNHDLNRQ 235
W+ S P + +QL A Y
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQL------AHY---------VVTAKLLGFT-- 259
Query: 236 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI-----DW---MNSVPFVMSLQLHGGNVVAS 287
P RS + SQ + V AV W SV +++ G V
Sbjct: 260 -PGEL---RSYLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAITVLFFIG--VRC 310
Query: 288 ---YPYDSF----YGESKDLLVVNISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLE 340
YP S +S + N P L + N+ +E + +
Sbjct: 311 YEAYPNTSLPPSILEDSLE----NNEGVPSPMLSISNLT------------QEQVQDYVN 354
Query: 341 YLVVEYIRGDSNIRFLLDNTRIHL--------LPNLNPDGSELAVEGNCRSGR----GRT 388
++ + L N +L L LN + R R
Sbjct: 355 K-TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 389 PPFLISLFL----PFPVTKNKPALTPDTDVFLH-LASTYARLHPTMHMKRPCPGNTVLKF 443
F FL PF + L P +D+ L + ++ P V
Sbjct: 414 LKFSNR-FLPVASPF----HSHLLVPASDLINKDLVKNNVSFNAK-DIQIP-----VYDT 462
Query: 444 ENGVTNGAAWYSFSGGMADYNYLYHGCLELTLEISCCRYPAPSEIPIHWRSNQNALISWL 503
+G +D L ++ I +P+ W + + +
Sbjct: 463 FDG--------------SD---LRVLSGSISERI----VDCIIRLPVKWETTTQFKATHI 501
Query: 504 ------------QQVHRGVKGLVLDETGSRL-------ANVSISLAYK 532
HR G TG R+ N +K
Sbjct: 502 LDFGPGGASGLGVLTHRNKDG-----TGVRVIVAGTLDINPDDDYGFK 544
Score = 38.5 bits (89), Expect = 0.008
Identities = 53/340 (15%), Positives = 94/340 (27%), Gaps = 128/340 (37%)
Query: 388 TPPFLISLFLPFPVTKNKP------------ALTPDTDVFL-----H-LASTYARLHPT- 428
TP L+ FL + + +P LT + +L H LA+ + + T
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 429 ---------------MHMKRPC--PGNTVLKFENGVTNGAAWYS-FSG-GMADYNYL--- 466
+ KRP N+ L F A + F G G D +Y
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTD-DYFEEL 173
Query: 467 ------YHGCLELTLEISCCR----YPAPSEIPIHWRSNQNALISWLQQVHRGVKGLVLD 516
YH + ++ S + + N ++ WL+
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENP---------S 223
Query: 517 ETGSR--LANVSISLAYKNVSFMSSQRGEYWRVLMPGI-------YFIEASKEGY--ELF 565
T + L ++ IS P I Y + A G+
Sbjct: 224 NTPDKDYLLSIPIS--------------------CPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 566 RDRIKIPESTSPVVGAVLESLLEFNITMTS-----IQNDK--------VGNASKEGY--- 609
R +K + ++ ++ I T + + +G E Y
Sbjct: 264 RSYLK---GATGHSQGLVTAVA---IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 610 ----ELFRDRIEIPEST-SP---VVG---AVLESLLE-FN 637
+ D +E E SP + ++ + N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 42.9 bits (100), Expect = 2e-04
Identities = 43/271 (15%), Positives = 88/271 (32%), Gaps = 30/271 (11%)
Query: 72 PVHQLG---VPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLL 128
PV P++ I G HG+E G + RL++ L G RI ++
Sbjct: 36 PVFSCNRGEGPSLLITGGNHGNELQGPILARRLVKWLPEAQRCG-----------RIIIV 84
Query: 129 PNLNPDGSELAVEGNCRSGRGRNNINNHDLNRQFPDYFRHNRSNIPTLVSTSQSIDPEVQ 188
P +NP ++ I+ +LNR FP + S + S+ + P V
Sbjct: 85 PEINPLA--------VQAWTRNTPIDGKNLNRVFPGRSDGSVSE-RIADAISRLLLPVVD 135
Query: 189 AVIDW------MNSVPFVMSLQLHGGNVVASYPYDSFYGESKNNINNHDLNRQFPDYFRH 242
V+D + P ++S + + + S + +
Sbjct: 136 TVLDLHSFGPTWDCAPSIISHPIADIDQMTKTVSISKAFKLPVTLLWEHNETDGMFDTLV 195
Query: 243 NRSNIPTLVSTSQSIDPEVQAVIDWMNSVPFVM-SLQLHGGNVVASYPYDSFYGESKDLL 301
+R + + +A+ + V + +L L G G++ +
Sbjct: 196 HRQGKTFICTEFGGGVVSAEALTIYEAGVRNGLIALGLVKGKAEYPTFRQQKTGQTLETT 255
Query: 302 VVNISTAPVHQLGVPNVKIVGNIHGDEPIGR 332
+ +P + P ++ + + +G
Sbjct: 256 SSDQLKSPSPGIFEPRCSVMDEVEQGDVVGV 286
Score = 35.6 bits (81), Expect = 0.045
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 309 PVHQLG---VPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDNTRIHLL 365
PV P++ I G HG+E G + RL+++L G RI ++
Sbjct: 36 PVFSCNRGEGPSLLITGGNHGNELQGPILARRLVKWLPEAQRCG-----------RIIIV 84
Query: 366 PNLNPDG 372
P +NP
Sbjct: 85 PEINPLA 91
>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2,
ACY2_RAT, STRU genomics, PSI, protein structure
initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP:
c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
Length = 312
Score = 41.0 bits (95), Expect = 8e-04
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 22/96 (22%)
Query: 69 STAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLL 128
ST+ V + + + I G HG+E G ++ L++ E R ++ + N R
Sbjct: 1 STSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNG-AEVHRAGLEVKPFITNPR---- 55
Query: 129 PNLNPDGSELAVEGNCRSGRGRNNINNHDLNRQFPD 164
AVE R DLNR F
Sbjct: 56 ----------AVEKCTRYID-------CDLNRVFDL 74
Score = 38.3 bits (88), Expect = 0.007
Identities = 28/190 (14%), Positives = 55/190 (28%), Gaps = 24/190 (12%)
Query: 306 STAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDN------ 359
ST+ V + + + I G HG+E G ++ L+ E R ++ + N
Sbjct: 1 STSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNG-AEVHRAGLEVKPFITNPRAVEK 59
Query: 360 -TRIHLLPNLN---PDGSELAVEGNCRSGRGRTPPFLISLFLPFPVTKNKPALTPDTDVF 415
TR ++ +LN + R + LF P DV
Sbjct: 60 CTR-YIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKN-------SDDAYDVV 111
Query: 416 LHLASTYARLHPTM-----HMKRPCPGNTVLKFENGVTNGAAWYSFSGGMADYNYLYHGC 470
L +T + + T+ +K + + +
Sbjct: 112 FDLHNTTSNMGCTLILGDSGNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAK 171
Query: 471 LELTLEISCC 480
+ +E+
Sbjct: 172 YPVGIEVGPQ 181
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.00A
{Chromobacterium violaceum} SCOP: c.56.5.7
Length = 341
Score = 40.4 bits (94), Expect = 0.001
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 21/99 (21%)
Query: 74 HQLGVPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNP 133
G +V + +HG+E E++ +L + + + + + N
Sbjct: 42 DARGADSVLLSCGVHGNETAPIEVVDGMLTDIAAGQLALNCRLLVMFANLD--------- 92
Query: 134 DGSELAVEGNCRSGRGRNNINNHDLNRQFPDYFRHNRSN 172
A+ R N+D+NR F +
Sbjct: 93 -----AIRQGVRY-------GNYDMNRLFNGAHARHPEL 119
Score = 32.3 bits (73), Expect = 0.51
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 311 HQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDN 359
G +V + +HG+E E++ +L + + + + + N
Sbjct: 42 DARGADSVLLSCGVHGNETAPIEVVDGMLTDIAAGQLALNCRLLVMFAN 90
>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus}
PDB: 3nh5_A 3nfz_A 3nh8_A*
Length = 327
Score = 38.7 bits (89), Expect = 0.004
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 22/102 (21%)
Query: 68 ISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHL 127
+S+ P + + V + G HG+E G + L++ +
Sbjct: 10 MSSLPGSREPLLRVAVTGGTHGNEMCGVYLARYWLQN---------------PGELQRPS 54
Query: 128 LPNLNPDGSELAVEGNCRSGRGRNNINNHDLNRQFPDYFRHN 169
+ + A CR DLNR F +
Sbjct: 55 FSAMPVLANPAATAACCRYLD-------RDLNRSCTLTFLGS 89
Score = 34.1 bits (77), Expect = 0.13
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 305 ISTAPVHQLGVPNVKIVGNIHGDEPIGREIILRLLEYL 342
+S+ P + + V + G HG+E G + L+
Sbjct: 10 MSSLPGSREPLLRVAVTGGTHGNEMCGVYLARYWLQNP 47
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics,
PSI, protein structure initiative; 2.33A {Vibrio
parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Length = 350
Score = 38.8 bits (90), Expect = 0.005
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 21/86 (24%)
Query: 79 PNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNPDGSEL 138
N+ I IHGDE E++ +++ + + + D+ F++ +
Sbjct: 54 KNIIISCGIHGDETAPMELVDSIIKDIESGFQKVDARCLFIIAHPE-------------- 99
Query: 139 AVEGNCRSGRGRNNINNHDLNRQFPD 164
+ + R +LNR F +
Sbjct: 100 STLAHTR-------FLEENLNRLFDE 118
Score = 32.2 bits (73), Expect = 0.48
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 316 PNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDN 359
N+ I IHGDE E++ +++ + + + D+ F++ +
Sbjct: 54 KNIIISCGIHGDETAPMELVDSIIKDIESGFQKVDARCLFIIAH 97
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.10A
{Escherichia coli} SCOP: c.56.5.7
Length = 335
Score = 36.9 bits (85), Expect = 0.016
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 21/90 (23%)
Query: 74 HQLGVPNVKIVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFLLDNTRIHLLPNLNP 133
+ I IHG+E E++ LL + G+ +R+ L L+ NP
Sbjct: 44 LTPPQGALVISAGIHGNETAPVEMLDALLGAI----SHGEIPLRWRL------LVILGNP 93
Query: 134 DGSELAVEGNCRSGRGRNNINNHDLNRQFP 163
A++ R + D+NR F
Sbjct: 94 P----ALKQGKRY-------CHSDMNRMFG 112
Score = 29.6 bits (66), Expect = 3.0
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 311 HQLGVPNVKIVGNIHGDEPIGREIILRLLEYLVVEYIRGDSNIRFLLDN 359
+ I IHG+E E++ LL + I + +L N
Sbjct: 44 LTPPQGALVISAGIHGNETAPVEMLDALLGAISHGEIPLRWRLLVILGN 92
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 31.2 bits (71), Expect = 1.1
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 75 QLGVPNVKIVGNIHGDEPIGREII---LRLLEHLVVEYIRGDSNIRF 118
L VP+ I+ I GD IG ++ +++ V + G I +
Sbjct: 20 VLQVPDQPIIPFIEGDG-IGCDVTPAMRSVVDAAVAKVYGGQRQIAW 65
Score = 30.8 bits (70), Expect = 1.5
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 312 QLGVPNVKIVGNIHGDEPIGREII---LRLLEYLVVEYIRGDSNIRF 355
L VP+ I+ I GD IG ++ +++ V + G I +
Sbjct: 20 VLQVPDQPIIPFIEGDG-IGCDVTPAMRSVVDAAVAKVYGGQRQIAW 65
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces
cerevisiae} PDB: 4ejs_B
Length = 270
Score = 30.4 bits (68), Expect = 1.5
Identities = 21/157 (13%), Positives = 50/157 (31%), Gaps = 27/157 (17%)
Query: 284 VVASYPYDSFYGESKDLLVV-NISTAPVHQLGV-------PNVKIVGNIHGDEPIGREII 335
+++ P + K ++++ +++ + P+ +V H D +
Sbjct: 87 IISYLPAATATQAKKHMVIIDSLNYISTEYITRFLSEIASPHCTMVATYHKDIKDENRTV 146
Query: 336 -----------LRLLEYLVVEYIRGDSNIRFLLDN-------TRIHLLPNLNPDGSELAV 377
L LL+++ + D + LD + LN D +L +
Sbjct: 147 IPDWNNNYPDKLTLLQFMATTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRL 206
Query: 378 EGNCRSGRGRTPPFLI-SLFLPFPVTKNKPALTPDTD 413
+SGR F++ S + + +
Sbjct: 207 VNKRKSGRSLEYDFIVNSNTHEYELLSTTKQEEESSS 243
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 29.6 bits (67), Expect = 3.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 75 QLGVPNVKIVGNIHGDEPIGREII---LRLLEHLVVEYIRGDSNIRF 118
L VP+ +V I GD +G E++ L++++ V + G I +
Sbjct: 29 SLRVPDNPVVAFIRGDG-VGPEVVESALKVVDAAVKKVYGGSRRIVW 74
Score = 28.4 bits (64), Expect = 7.5
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 312 QLGVPNVKIVGNIHGDEPIGREII---LRLLEYLVVEYIRGDSNIRF 355
L VP+ +V I GD +G E++ L++++ V + G I +
Sbjct: 29 SLRVPDNPVVAFIRGDG-VGPEVVESALKVVDAAVKKVYGGSRRIVW 74
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded
beta-propeller, structural genomics, PSI-2; 1.85A
{Agrobacterium tumefaciens str}
Length = 297
Score = 29.3 bits (66), Expect = 4.2
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 352 NIRFLLDNTRIHLLPNLNPDGSELAVEGNCRSGR---GRTPPFLISLFLPFPVTKNKPAL 408
+R + + PN +PDG L + R P + N +
Sbjct: 33 KMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92
Query: 409 TPD 411
+PD
Sbjct: 93 SPD 95
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 28.8 bits (65), Expect = 6.4
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 45/111 (40%)
Query: 46 ANMTELYSIGKSVLGKD-----LLVVNIST----APVHQLGVPNVKIV--GNIHGDEPIG 94
++Y + + VLG+ +N+ T A VKI+ H +
Sbjct: 8 GRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYA---------VKIIEKQPGHIRSRVF 58
Query: 95 REI-----------ILRLLE--------HLVVEYIRGDSNIRFLLDNTRIH 126
RE+ +L L+E +LV E +RG S +L IH
Sbjct: 59 REVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGS----ILS--HIH 103
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 28.5 bits (64), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 75 QLGVPNVKIVGNIHGDEPIGREII---LRLLEHLVVEYIRGDSNIRF 118
L VPN I+ I GD G +I ++LE V + +G+ I +
Sbjct: 13 VLNVPNNPIIPFIEGDG-TGPDIWNAASKVLEAAVEKAYKGEKKITW 58
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 28.6 bits (65), Expect = 7.9
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 162 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI 191
F F++ + T++ DP++ ++
Sbjct: 117 FVKGFKNEVQVVVTVLQHDLENDPDILGMV 146
Score = 28.6 bits (65), Expect = 7.9
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 236 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI 265
F F++ + T++ DP++ ++
Sbjct: 117 FVKGFKNEVQVVVTVLQHDLENDPDILGMV 146
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 28.6 bits (65), Expect = 7.9
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 162 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI 191
FP + ++ + L++ +P+V A+
Sbjct: 103 FPAGYFYDTQVLCNLLAVDGVNEPDVLAIN 132
Score = 28.6 bits (65), Expect = 7.9
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 236 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI 265
FP + ++ + L++ +P+V A+
Sbjct: 103 FPAGYFYDTQVLCNLLAVDGVNEPDVLAIN 132
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 28.2 bits (64), Expect = 8.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 162 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI 191
FP+ F + I T+VS + ++P++ A+I
Sbjct: 103 FPEGFVNEVQVIATVVSVNPQVNPDIVAMI 132
Score = 28.2 bits (64), Expect = 8.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 236 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI 265
FP+ F + I T+VS + ++P++ A+I
Sbjct: 103 FPEGFVNEVQVIATVVSVNPQVNPDIVAMI 132
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis,
developmen protein, differentiation, glycoprotein,
heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A
3i97_A* 1kex_A
Length = 318
Score = 28.2 bits (62), Expect = 8.8
Identities = 14/125 (11%), Positives = 27/125 (21%), Gaps = 2/125 (1%)
Query: 422 YARLHPTMHMKRPCPGNTVLKFENGVTN-GAAWYSFSGGMADYNYLYHGCLELTLEISCC 480
+ R+ P V + SG ++D +
Sbjct: 135 FVRIKPATWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITSSNQGDRNWMPENI 194
Query: 481 RYPAPSEIPIHWRSNQNALISWLQQVHRGVKGLVLDETGSRLANVSISLAYKNVSFMSSQ 540
R + + + WLQ K + + + + S
Sbjct: 195 RLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGG-KHRENKVFMRKFKIGYSN 253
Query: 541 RGEYW 545
G W
Sbjct: 254 NGSDW 258
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 28.6 bits (65), Expect = 8.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 162 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI 191
FP+ F + I T+VS + ++P++ A+I
Sbjct: 109 FPEGFVNEVQVIATVVSVNPQVNPDIVAMI 138
Score = 28.6 bits (65), Expect = 8.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 236 FPDYFRHNRSNIPTLVSTSQSIDPEVQAVI 265
FP+ F + I T+VS + ++P++ A+I
Sbjct: 109 FPEGFVNEVQVIATVVSVNPQVNPDIVAMI 138
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 28.1 bits (63), Expect = 9.5
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 78 VPNVK--IVGNIHGDEPIGREIILRLLEHLVVEYIRGDSNIRFL 119
+P V+ +VG + D+P G + L + +Y +
Sbjct: 260 IPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDY-DVKVLTNLI 302
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase,
methyltransferase, nucleot biosynthesis; HET: 7C1 UMP;
2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A*
1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A*
3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A*
1tsz_A 1tdb_A* 1tda_A* ...
Length = 316
Score = 28.1 bits (63), Expect = 9.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 109 YIRGDSNIRFLLDN 122
++ GD+NIRFLL +
Sbjct: 64 FLHGDTNIRFLLQH 77
Score = 28.1 bits (63), Expect = 9.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 346 YIRGDSNIRFLLDN 359
++ GD+NIRFLL +
Sbjct: 64 FLHGDTNIRFLLQH 77
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics,
seattle S genomics center for infectious disease,
transferase; HET: CIT; 1.65A {Burkholderia
thailandensis}
Length = 327
Score = 28.1 bits (63), Expect = 9.7
Identities = 1/14 (7%), Positives = 4/14 (28%)
Query: 109 YIRGDSNIRFLLDN 122
++R +
Sbjct: 66 FLRATRSAAEFRAL 79
Score = 28.1 bits (63), Expect = 9.7
Identities = 1/14 (7%), Positives = 4/14 (28%)
Query: 346 YIRGDSNIRFLLDN 359
++R +
Sbjct: 66 FLRATRSAAEFRAL 79
>2rdm_A Response regulator receiver protein; structural genomics, unknown
function, PSI-2, protein struct initiative; HET: MSE;
1.76A {Sinorhizobium medicae}
Length = 132
Score = 27.2 bits (61), Expect = 9.8
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 327 DEPIGREIILRLLE---YLVVEYIRGDSNIRFLLDNTRIHLL 365
DE I L +LV G I L I +
Sbjct: 13 DEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGV 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,112,519
Number of extensions: 629220
Number of successful extensions: 1639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 125
Length of query: 651
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 551
Effective length of database: 3,909,693
Effective search space: 2154240843
Effective search space used: 2154240843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)