Query psy8325
Match_columns 237
No_of_seqs 236 out of 1461
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 00:50:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bvo_A CO-chaperone protein HS 100.0 7.9E-55 2.7E-59 375.2 23.9 200 31-230 4-207 (207)
2 3hho_A CO-chaperone protein HS 100.0 3.4E-43 1.2E-47 295.1 18.2 165 66-230 3-172 (174)
3 1fpo_A HSC20, chaperone protei 100.0 7.9E-42 2.7E-46 286.2 19.2 164 67-230 1-168 (171)
4 3uo3_A J-type CO-chaperone JAC 100.0 2.9E-40 1E-44 279.1 13.8 160 62-229 6-176 (181)
5 2l6l_A DNAJ homolog subfamily 99.8 5.7E-23 1.9E-27 168.4 0.5 100 65-167 8-108 (155)
6 1wjz_A 1700030A21RIK protein; 99.7 3E-18 1E-22 128.9 8.0 78 65-144 14-92 (94)
7 2dn9_A DNAJ homolog subfamily 99.7 5.2E-17 1.8E-21 118.5 8.3 68 65-139 5-72 (79)
8 2ej7_A HCG3 gene; HCG3 protein 99.7 6.9E-17 2.4E-21 118.6 8.7 70 65-140 7-76 (82)
9 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 7.2E-17 2.5E-21 124.8 8.5 73 66-141 14-86 (109)
10 2yua_A Williams-beuren syndrom 99.7 1E-16 3.4E-21 122.2 8.8 71 65-142 15-85 (99)
11 2ctp_A DNAJ homolog subfamily 99.7 7.2E-17 2.4E-21 117.6 6.8 68 65-140 5-72 (78)
12 2cug_A Mkiaa0962 protein; DNAJ 99.7 2.3E-16 7.9E-21 117.6 9.4 68 65-140 15-82 (88)
13 1hdj_A Human HSP40, HDJ-1; mol 99.7 1.3E-16 4.5E-21 115.9 7.8 65 67-139 3-67 (77)
14 2ctr_A DNAJ homolog subfamily 99.7 3E-16 1E-20 117.0 8.7 68 65-140 5-72 (88)
15 2och_A Hypothetical protein DN 99.7 2.3E-16 7.7E-21 113.6 7.7 63 66-138 7-69 (73)
16 2dmx_A DNAJ homolog subfamily 99.7 2.4E-16 8.2E-21 118.3 7.9 69 66-140 8-76 (92)
17 2lgw_A DNAJ homolog subfamily 99.6 2.5E-16 8.7E-21 120.3 7.5 68 67-140 2-69 (99)
18 2ctw_A DNAJ homolog subfamily 99.6 6.4E-16 2.2E-20 119.8 8.8 67 65-138 15-81 (109)
19 2ctq_A DNAJ homolog subfamily 99.6 5.2E-16 1.8E-20 120.8 8.3 70 65-141 18-87 (112)
20 2o37_A Protein SIS1; HSP40, J- 99.6 1.2E-15 4.1E-20 114.7 7.6 64 66-139 7-70 (92)
21 1bq0_A DNAJ, HSP40; chaperone, 99.6 5.2E-16 1.8E-20 118.9 3.8 67 67-140 3-69 (103)
22 2ys8_A RAB-related GTP-binding 99.6 1.9E-15 6.4E-20 113.4 6.2 63 65-135 25-87 (90)
23 1faf_A Large T antigen; J doma 99.5 1.7E-15 5.7E-20 111.2 3.3 63 66-137 10-72 (79)
24 1gh6_A Large T antigen; tumor 99.5 9.7E-16 3.3E-20 120.1 0.9 63 67-138 8-70 (114)
25 3apq_A DNAJ homolog subfamily 99.5 1E-14 3.4E-19 122.7 6.7 66 67-139 2-67 (210)
26 2pf4_E Small T antigen; PP2A, 99.5 3.8E-15 1.3E-19 124.7 1.3 64 66-138 10-73 (174)
27 1n4c_A Auxilin; four helix bun 99.5 1.7E-14 5.7E-19 121.5 3.0 66 67-136 117-182 (182)
28 1iur_A KIAA0730 protein; DNAJ 99.4 4E-14 1.4E-18 106.1 3.9 66 64-135 13-78 (88)
29 2guz_A Mitochondrial import in 99.4 1.3E-13 4.4E-18 99.0 3.7 58 66-133 13-70 (71)
30 3ag7_A Putative uncharacterize 99.4 1.2E-13 4.3E-18 106.7 3.8 63 66-131 40-104 (106)
31 3lz8_A Putative chaperone DNAJ 99.4 6.5E-14 2.2E-18 127.6 0.0 66 66-139 27-92 (329)
32 2qwo_B Putative tyrosine-prote 99.3 1.1E-12 3.8E-17 99.0 2.8 59 67-129 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.2 2.3E-12 7.9E-17 127.3 0.9 67 65-138 19-85 (780)
34 2y4t_A DNAJ homolog subfamily 98.6 5.8E-08 2E-12 86.4 6.4 68 67-138 382-449 (450)
35 2guz_B Mitochondrial import in 98.2 2.5E-06 8.4E-11 60.2 5.0 54 68-130 5-59 (65)
36 1pft_A TFIIB, PFTFIIBN; N-term 83.2 0.65 2.2E-05 30.0 2.2 27 37-63 5-36 (50)
37 4esj_A Type-2 restriction enzy 77.5 0.8 2.7E-05 39.7 1.5 23 37-59 34-64 (257)
38 1ee8_A MUTM (FPG) protein; bet 73.4 1.1 3.8E-05 39.0 1.3 22 38-59 236-263 (266)
39 1dl6_A Transcription factor II 72.5 2.5 8.7E-05 28.3 2.7 24 39-62 13-41 (58)
40 1gp8_A Protein (scaffolding pr 72.3 5.5 0.00019 24.8 3.9 33 183-215 6-38 (40)
41 4abm_A Charged multivesicular 70.9 25 0.00086 24.9 10.0 67 158-231 6-72 (79)
42 2xzf_A Formamidopyrimidine-DNA 70.0 1.1 3.8E-05 39.0 0.5 21 38-58 243-269 (271)
43 2kdx_A HYPA, hydrogenase/ureas 66.8 3.2 0.00011 31.4 2.5 24 38-61 74-100 (119)
44 3j20_Y 30S ribosomal protein S 65.9 2.6 8.9E-05 27.5 1.6 25 36-60 18-46 (50)
45 2hf1_A Tetraacyldisaccharide-1 64.7 1.5 5E-05 30.6 0.2 28 38-65 9-40 (68)
46 2jr6_A UPF0434 protein NMA0874 64.7 1.5 5.2E-05 30.5 0.3 28 38-65 9-40 (68)
47 2pk7_A Uncharacterized protein 64.4 1.5 5.3E-05 30.6 0.2 28 38-65 9-40 (69)
48 3a43_A HYPD, hydrogenase nicke 63.1 1.9 6.5E-05 33.9 0.6 24 38-61 71-117 (139)
49 2js4_A UPF0434 protein BB2007; 62.3 1.5 5.2E-05 30.7 -0.1 28 38-65 9-40 (70)
50 3myf_A Sensor protein; HPT, hi 62.1 11 0.00038 28.3 4.8 36 179-214 25-60 (119)
51 2lcq_A Putative toxin VAPC6; P 61.3 2.8 9.6E-05 33.3 1.3 21 39-59 134-156 (165)
52 2con_A RUH-035 protein, NIN on 60.3 3.8 0.00013 29.4 1.7 21 39-59 17-38 (79)
53 2lbz_A Thuricin17, thurincin H 59.4 3.1 0.0001 24.0 0.8 13 39-59 3-15 (31)
54 2jny_A Uncharacterized BCR; st 59.1 2.1 7.3E-05 29.7 0.2 28 38-65 11-42 (67)
55 3u50_C Telomerase-associated p 54.8 2.6 8.7E-05 34.6 -0.0 24 37-60 42-68 (172)
56 2jrp_A Putative cytoplasmic pr 54.6 4.2 0.00014 29.4 1.1 24 39-62 33-62 (81)
57 2a0b_A HPT domain; sensory tra 53.5 45 0.0015 24.6 7.0 58 172-229 55-121 (125)
58 3j21_g 50S ribosomal protein L 52.4 6.5 0.00022 25.9 1.7 23 38-60 15-37 (51)
59 3h0g_I DNA-directed RNA polyme 52.0 9.5 0.00032 28.7 2.8 29 37-65 4-40 (113)
60 2pzi_A Probable serine/threoni 51.9 6.3 0.00022 37.8 2.3 48 66-126 628-675 (681)
61 3us6_A Histidine-containing ph 51.2 15 0.00051 29.0 4.0 53 172-224 70-131 (153)
62 3v2d_5 50S ribosomal protein L 50.6 6 0.00021 26.8 1.3 21 38-59 31-51 (60)
63 3k7a_M Transcription initiatio 49.5 9.7 0.00033 33.9 3.0 26 37-62 21-53 (345)
64 3iqt_A Signal transduction his 49.5 15 0.00052 27.9 3.7 38 177-214 32-69 (123)
65 2k4x_A 30S ribosomal protein S 49.1 11 0.00038 24.9 2.4 25 36-60 17-45 (55)
66 3qt1_I DNA-directed RNA polyme 48.1 12 0.00041 29.2 2.9 32 35-66 22-61 (133)
67 2akl_A PHNA-like protein PA012 47.6 8.1 0.00028 30.4 1.8 26 36-61 26-54 (138)
68 3pwf_A Rubrerythrin; non heme 47.2 6.3 0.00022 31.9 1.2 21 39-59 140-161 (170)
69 2zjr_Z 50S ribosomal protein L 46.8 7.8 0.00027 26.2 1.4 21 38-59 31-51 (60)
70 3w0f_A Endonuclease 8-like 3; 46.4 7.3 0.00025 34.4 1.6 22 38-59 252-281 (287)
71 1twf_L ABC10-alpha, DNA-direct 46.3 8.9 0.0003 26.8 1.7 21 39-59 30-53 (70)
72 2apo_B Ribosome biogenesis pro 44.1 14 0.00048 25.1 2.4 25 37-63 6-30 (60)
73 1vq8_Z 50S ribosomal protein L 42.7 5.8 0.0002 28.6 0.3 27 37-63 27-57 (83)
74 1yuz_A Nigerythrin; rubrythrin 42.1 6.8 0.00023 32.5 0.7 21 39-59 173-194 (202)
75 1wg2_A Zinc finger (AN1-like) 41.4 22 0.00074 24.4 3.0 26 35-61 13-38 (64)
76 3irb_A Uncharacterized protein 40.9 7 0.00024 30.8 0.5 22 38-59 48-69 (145)
77 2d74_B Translation initiation 40.7 19 0.00064 28.7 3.0 32 37-68 104-142 (148)
78 3m7n_A Putative uncharacterize 40.6 15 0.0005 29.8 2.4 33 37-69 140-174 (179)
79 1xs0_A Inhibitor of vertebrate 40.5 11 0.00037 29.7 1.6 36 70-105 94-129 (136)
80 3twl_A Formamidopyrimidine-DNA 37.9 9.2 0.00031 33.9 0.8 23 37-59 247-277 (310)
81 2gnr_A Conserved hypothetical 35.1 9.7 0.00033 30.0 0.5 23 38-60 48-70 (145)
82 1wfp_A Zinc finger (AN1-like) 34.7 30 0.001 24.4 2.9 26 35-61 23-48 (74)
83 1sum_B Phosphate transport sys 34.4 1.8E+02 0.0063 23.4 8.5 56 175-230 8-66 (235)
84 1wfh_A Zinc finger (AN1-like) 34.3 34 0.0011 23.5 3.1 26 35-61 13-38 (64)
85 3cw2_K Translation initiation 34.0 22 0.00075 28.0 2.4 28 37-64 103-137 (139)
86 2gd5_A Charged multivesicular 33.9 1.7E+02 0.0058 23.2 7.9 55 174-229 24-82 (179)
87 1lko_A Rubrerythrin all-iron(I 33.3 8.4 0.00029 31.6 -0.2 30 38-73 156-187 (191)
88 1yvi_A Histidine-containing ph 32.9 1.6E+02 0.0056 22.4 8.0 55 172-226 71-134 (149)
89 1l1o_C Replication protein A 7 32.0 12 0.0004 30.4 0.5 25 37-61 43-72 (181)
90 2i0m_A Phosphate transport sys 31.4 1.9E+02 0.0066 22.8 8.5 56 175-230 8-66 (216)
91 3k1f_M Transcription initiatio 30.7 13 0.00046 30.7 0.6 26 37-62 21-53 (197)
92 4bbr_M Transcription initiatio 29.3 14 0.00047 33.1 0.5 25 37-61 21-52 (345)
93 2kpi_A Uncharacterized protein 29.3 12 0.0004 24.9 0.0 28 38-65 11-42 (56)
94 2jne_A Hypothetical protein YF 29.0 11 0.00038 28.1 -0.1 10 38-47 33-42 (101)
95 1deq_A Fibrinogen (alpha chain 28.4 2.2E+02 0.0074 26.1 8.2 57 164-232 98-155 (390)
96 2aus_D NOP10, ribosome biogene 27.2 26 0.0009 23.7 1.5 22 38-61 6-27 (60)
97 2kmz_A Tumor necrosis factor r 26.8 26 0.00088 22.9 1.3 23 39-63 24-46 (53)
98 3ghg_A Fibrinogen alpha chain; 26.7 1E+02 0.0035 29.5 5.9 122 83-228 66-190 (562)
99 1vk6_A NADH pyrophosphatase; 1 26.6 24 0.00082 30.3 1.6 28 36-63 106-137 (269)
100 1e52_A Excinuclease ABC subuni 26.6 1.1E+02 0.0037 20.7 4.6 34 183-216 22-55 (63)
101 3ghg_A Fibrinogen alpha chain; 26.5 55 0.0019 31.3 4.1 21 176-196 108-128 (562)
102 3ihu_A Transcriptional regulat 26.4 93 0.0032 25.0 5.1 49 121-169 46-99 (222)
103 3h0g_L DNA-directed RNA polyme 26.1 39 0.0013 23.0 2.2 22 38-59 22-46 (63)
104 1nee_A EIF-2-beta, probable tr 25.7 28 0.00096 27.3 1.7 28 37-64 102-136 (138)
105 1wd2_A Ariadne-1 protein homol 25.2 48 0.0016 22.0 2.6 10 38-47 7-16 (60)
106 1ryq_A DNA-directed RNA polyme 25.2 19 0.00065 25.1 0.5 23 36-60 10-32 (69)
107 1gh9_A 8.3 kDa protein (gene M 24.6 17 0.00057 25.4 0.1 48 39-96 6-57 (71)
108 2cp9_A EF-TS, EF-TSMT, elongat 24.4 70 0.0024 21.7 3.3 37 174-212 11-47 (64)
109 4hc9_A Trans-acting T-cell-spe 24.1 5.6 0.00019 30.4 -2.6 49 37-94 59-114 (115)
110 1nui_A DNA primase/helicase; z 24.1 24 0.00083 29.6 1.1 23 38-60 15-42 (255)
111 1twf_I B12.6, DNA-directed RNA 24.0 21 0.00072 27.1 0.6 29 37-65 4-40 (122)
112 1k81_A EIF-2-beta, probable tr 22.7 13 0.00043 22.5 -0.7 26 39-64 2-34 (36)
113 1xwm_A PHOU, phosphate uptake 22.5 2.9E+02 0.0098 21.8 7.4 23 203-225 77-99 (217)
114 2gmg_A Hypothetical protein PF 21.7 52 0.0018 24.7 2.4 25 35-59 65-92 (105)
115 2zkr_2 60S ribosomal protein L 21.0 61 0.0021 24.0 2.6 23 37-59 16-39 (97)
116 2e62_A Protein AT5G25060; CWF2 20.6 1.9E+02 0.0063 19.5 4.7 33 158-195 23-55 (61)
117 1p91_A Ribosomal RNA large sub 20.5 50 0.0017 27.0 2.3 36 38-75 3-40 (269)
No 1
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-55 Score=375.17 Aligned_cols=200 Identities=36% Similarity=0.699 Sum_probs=186.0
Q ss_pred cccccCCCCCCcCCCC---CCCCCccCcCCCcccCCCCCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCH
Q psy8325 31 DTVKHTELKCWKCLKN---LSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQ 107 (237)
Q Consensus 31 ~~~~~~~~~Cw~C~~~---~~~~~~fC~~C~~~qp~~~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~ 107 (237)
+++.+.+..||+|+.+ +....+||++|+.+|||....|||++|||+++|++|..+|+++||+|++++|||++++.++
T Consensus 4 ~~~~~~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~ 83 (207)
T 3bvo_A 4 SQAGSNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQ 83 (207)
T ss_dssp -------CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCH
T ss_pred cccCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCH
Confidence 3444567799999997 5678999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcCCCcccc-ccCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q psy8325 108 EEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEED-TKGTDQKLLMEILMLNEELDEASSEEDLEKLQTLIQAT 186 (237)
Q Consensus 108 ~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~e~-~~~~d~efLmeimE~rE~leea~~~~~l~~l~~~~~~~ 186 (237)
.++..|.+.|+.||+||+||+||.+|+.|++.++|+++.++ .+.+||+|||++|||||+|+++.+.++|.++..+++.+
T Consensus 84 ~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~ 163 (207)
T 3bvo_A 84 TEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAK 163 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy8325 187 IDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQL 230 (237)
Q Consensus 187 i~~~~~~l~~~f~~~d~~~A~~~l~rlkY~~~l~~~ik~k~~~l 230 (237)
++++.+.|.++|+.+||+.|+..++|||||.||.++|++++.+|
T Consensus 164 ~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~~~~~~~ 207 (207)
T 3bvo_A 164 QKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL 207 (207)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999998875
No 2
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=100.00 E-value=3.4e-43 Score=295.11 Aligned_cols=165 Identities=29% Similarity=0.536 Sum_probs=154.8
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcCCCc
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISI 145 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~ 145 (237)
..|||++||||++|+||..+|+++||+|++++|||++++.+..++..|.+.|..||+||+||+||.+|+.|++.++|+++
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~ 82 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEM 82 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-ccCCCHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhHHHHH
Q psy8325 146 EED-TKGTDQKLLMEILMLNEELDEASS----EEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLV 220 (237)
Q Consensus 146 ~e~-~~~~d~efLmeimE~rE~leea~~----~~~l~~l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlkY~~~l~ 220 (237)
.++ .+.+||+|||++|||||+|+++.+ .+.|..|..+++.++.++.+.|.++|+.+||+.|+..+++|+||.||.
T Consensus 83 ~~e~~~~~d~~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~ 162 (174)
T 3hho_A 83 NAEQQTLQDPMFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLK 162 (174)
T ss_dssp C----CCCCHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 866 589999999999999999999875 345999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy8325 221 SKVRDKKNQL 230 (237)
Q Consensus 221 ~~ik~k~~~l 230 (237)
++|+++.+.|
T Consensus 163 ~~i~~~~~~l 172 (174)
T 3hho_A 163 NEVERVEDQL 172 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 3
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=100.00 E-value=7.9e-42 Score=286.16 Aligned_cols=164 Identities=31% Similarity=0.518 Sum_probs=156.2
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcCCCcc
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIE 146 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~ 146 (237)
+|||++||||++|+||..+|+++||+|++++|||++++.++.++..|.+.|..||+||+||+||.+|+.|++.+.|+++.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~ 80 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLA 80 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc-ccCCCHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhHHHHHHH
Q psy8325 147 ED-TKGTDQKLLMEILMLNEELDEAS---SEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSK 222 (237)
Q Consensus 147 e~-~~~~d~efLmeimE~rE~leea~---~~~~l~~l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlkY~~~l~~~ 222 (237)
++ .+.+||+|||++|||||+|+++. +.+.|..|..+++++++.+.+.|..+|+.+||+.|+..+++||||.+|.++
T Consensus 81 ~e~~~~~d~~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~ 160 (171)
T 1fpo_A 81 SEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSS 160 (171)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHH
Confidence 66 68899999999999999999986 455699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q psy8325 223 VRDKKNQL 230 (237)
Q Consensus 223 ik~k~~~l 230 (237)
|+++.+.|
T Consensus 161 i~~~~~~l 168 (171)
T 1fpo_A 161 AEQLEEKL 168 (171)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHh
Confidence 99999875
No 4
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=100.00 E-value=2.9e-40 Score=279.05 Aligned_cols=160 Identities=29% Similarity=0.540 Sum_probs=146.1
Q ss_pred CCCCCCChhhhcC-----CcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHH
Q psy8325 62 KPDSQSNYYDLFD-----LKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136 (237)
Q Consensus 62 p~~~~~nyf~llg-----l~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y 136 (237)
+.....|||++|| ..+.|++|..+|+++||+|++++|||++++ +.+.|..||+||+||+||.+|+.|
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--------a~~~f~~i~~AY~vL~dp~~R~~Y 77 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDPLRRSQY 77 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--------CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--------HHHHHHHHHHHHHHHcChHHHHHH
Confidence 3345579999995 333488999999999999999999999976 346799999999999999999999
Q ss_pred HHhh-cCCCcccc-----ccCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q psy8325 137 LLSL-QNISIEED-----TKGTDQKLLMEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLL 210 (237)
Q Consensus 137 ll~l-~g~~~~e~-----~~~~d~efLmeimE~rE~leea~~~~~l~~l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l 210 (237)
++.+ +|+++.++ .+.+||+|||++||+||+|+++.+.+++..|..++++++.++.+.|.++|+.+||++|+..+
T Consensus 78 d~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~ 157 (181)
T 3uo3_A 78 MLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLT 157 (181)
T ss_dssp HHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999 99998765 36789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhh
Q psy8325 211 IRMKYFTTLVSKVRDKKNQ 229 (237)
Q Consensus 211 ~rlkY~~~l~~~ik~k~~~ 229 (237)
++|+||.||.++|++|.+-
T Consensus 158 ~kL~y~~kl~~~ik~we~g 176 (181)
T 3uo3_A 158 VELKYWYNLAKAFKDWAPG 176 (181)
T ss_dssp HHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999764
No 5
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=5.7e-23 Score=168.44 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=87.9
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcCC
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKN-QEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNI 143 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~-~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~ 143 (237)
...|||++|||++++ +.++|+++||+|++++|||++++.+ +.+++.+.+.|..||+||+||+||.+|+.|++.+.|.
T Consensus 8 ~~~~~y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 8 PKKDWYSILGADPSA--NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CCSHHHHHHTCCTTC--CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred CCCChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 357999999999987 6899999999999999999998875 4778888999999999999999999999999988876
Q ss_pred CccccccCCCHHHHHHHHHHHHHH
Q psy8325 144 SIEEDTKGTDQKLLMEILMLNEEL 167 (237)
Q Consensus 144 ~~~e~~~~~d~efLmeimE~rE~l 167 (237)
.+.. .+..+++|+|++|+++|+.
T Consensus 86 ~~~~-~~~~~~~~~~~~m~~~e~~ 108 (155)
T 2l6l_A 86 DLRN-VGPVDAQVYLEEMSWNEGD 108 (155)
T ss_dssp HHHT-TCSSSEEEETTTSEEETTT
T ss_pred hccc-cccccceeeHHHhccccCC
Confidence 5544 3567889999999998754
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.74 E-value=3e-18 Score=128.88 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcCC
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSN-KNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNI 143 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~-~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~ 143 (237)
...|||++|||++++ +..+|+++||+|++++|||+++. .++.++..+.+.|..|++||++|+||.+|+.|+..+.|.
T Consensus 14 ~~~~~y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 14 LKKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp SCSCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred CCCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 357999999999874 88999999999999999999974 355667778899999999999999999999999998875
Q ss_pred C
Q psy8325 144 S 144 (237)
Q Consensus 144 ~ 144 (237)
.
T Consensus 92 ~ 92 (94)
T 1wjz_A 92 S 92 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=118.48 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=60.1
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHh
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLS 139 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 139 (237)
...|||++|||+++ .+..+|+++||+|++++|||++...+. +.+.|..||+||++|+||.+|+.|+..
T Consensus 5 ~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 72 (79)
T 2dn9_A 5 SSGDYYQILGVPRN--ASQKEIKKAYYQLAKKYHPDTNKDDPK-----AKEKFSQLAEAYEVLSDEVKRKQYDAY 72 (79)
T ss_dssp CCSCHHHHHTCCTT--CCHHHHHHHHHHHHHHTCTTTCSSCTT-----HHHHHHHHHHHHHHHHSHHHHHHHHHS
T ss_pred CCCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 45799999999996 488999999999999999999986543 347889999999999999999999764
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=118.62 Aligned_cols=70 Identities=21% Similarity=0.400 Sum_probs=61.2
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhh
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSL 140 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 140 (237)
...|||++|||++++ +.++|+++||+|++++|||++... ...+.+.|..||+||++|+||.+|+.|+...
T Consensus 7 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQA--SSEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SSCCHHHHTTCCTTC--CHHHHHHHHHHHHTTSCTTTCSTT----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 357999999999975 889999999999999999998754 2346688999999999999999999998643
No 9
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.68 E-value=7.2e-17 Score=124.84 Aligned_cols=73 Identities=25% Similarity=0.447 Sum_probs=65.6
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhc
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQ 141 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~ 141 (237)
..|||++|||++++ ++.++|+++||+|++++|||++++ ..++..+.+.|..||+||++|+||.+|+.|+..+.
T Consensus 14 ~~~~y~iLgv~~~a-~s~~eIk~aYr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 14 LENCYDVLEVNREE-FDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TSCHHHHTTCCGGG-CCHHHHHHHHHHHHHHTCGGGCCS--HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCC-CCHHHHHHHHHHHHHHHCcCCCCC--ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 57999999999984 589999999999999999999877 45567788999999999999999999999988653
No 10
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=122.20 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=62.6
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcC
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQN 142 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g 142 (237)
...|||++|||++.+ +.++|+++||+|++++|||++..... +.+.|..|++||++|+||.+|+.|+..+.+
T Consensus 15 ~~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 15 SRTALYDLLGVPSTA--TQAQIKAAYYRQCFLYHPDRNSGSAE-----AAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CSSHHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCSSCSH-----HHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CccCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 357999999999974 88999999999999999999976543 457899999999999999999999987654
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.2e-17 Score=117.57 Aligned_cols=68 Identities=26% Similarity=0.452 Sum_probs=59.9
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhh
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSL 140 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 140 (237)
...|||++|||++++ +.++|+++||+|++++|||++..+. +.+.|..|++||++|+||.+|+.|+...
T Consensus 5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 72 (78)
T 2ctp_A 5 SSGDYYEILGVSRGA--SDEDLKKAYRRLALKFHPDKNHAPG------ATEAFKAIGTAYAVLSNPEKRKQYDQFG 72 (78)
T ss_dssp CSCCHHHHHTCCTTC--CHHHHHHHHHHHHTTSCTTTCSSHH------HHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 357999999999975 8899999999999999999987532 4578999999999999999999998654
No 12
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=2.3e-16 Score=117.64 Aligned_cols=68 Identities=28% Similarity=0.362 Sum_probs=60.1
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhh
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSL 140 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 140 (237)
...|||++|||++++ +.++|+++||+|++++|||++.++. +.+.|..||+||++|+||.+|+.|+...
T Consensus 15 ~~~d~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 82 (88)
T 2cug_A 15 LDFDPYRVLGVSRTA--SQADIKKAYKKLAREWHPDKNKDPG------AEDRFIQISKAYEILSNEEKRTNYDHYG 82 (88)
T ss_dssp SSSCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCCSTT------HHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCChh------HHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 357999999999974 8899999999999999999998743 3468999999999999999999998654
No 13
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.67 E-value=1.3e-16 Score=115.88 Aligned_cols=65 Identities=20% Similarity=0.433 Sum_probs=58.5
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHh
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLS 139 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 139 (237)
.|||++|||++++ +.++|+++||+|++++|||++.++. +.+.|..||+||++|+||.+|+.|+..
T Consensus 3 ~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 67 (77)
T 1hdj_A 3 KDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKEPG------AEEKFKEIAEAYDVLSDPRKREIFDRY 67 (77)
T ss_dssp CCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCCTT------HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 5899999999974 8899999999999999999998653 347899999999999999999999864
No 14
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=117.01 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=59.9
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhh
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSL 140 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 140 (237)
...|||++|||++++ +.++|+++||+|++++|||++... .+.+.|..|++||++|+||.+|+.|+...
T Consensus 5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~------~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 5 SSGSYYDILGVPKSA--SERQIKKAFHKLAMKYHPDKNKSP------DAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCCSHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCCSH------HHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCh------HHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 357999999999974 889999999999999999998742 24578999999999999999999998754
No 15
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.65 E-value=2.3e-16 Score=113.61 Aligned_cols=63 Identities=24% Similarity=0.520 Sum_probs=56.9
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHH
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLL 138 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 138 (237)
..|||++|||++++ +..+|+++||+|++++|||++++. .+.|..|++||++|+||.+|+.|+.
T Consensus 7 ~~~~y~iLgl~~~a--~~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~ 69 (73)
T 2och_A 7 ETGYYDVLGVKPDA--SDNELKKAYRKMALKFHPDKNPDG--------AEQFKQISQAYEVLSDEKKRQIYDQ 69 (73)
T ss_dssp CCCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCTTC--------HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCcCH--------HHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 47999999999974 889999999999999999998754 2578999999999999999999975
No 16
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=118.29 Aligned_cols=69 Identities=25% Similarity=0.476 Sum_probs=60.6
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhh
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSL 140 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 140 (237)
..|||++|||++++ +.++|+++||+|++++|||++.... ..+.+.|..||+||++|+||.+|+.|+...
T Consensus 8 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 8 MANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNPDNK----EEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCCHHHHHTCCTTC--CTTHHHHHHHHHHHHTCTTTCSSCS----HHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred CcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCccH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 46999999999975 7779999999999999999987653 245678999999999999999999998753
No 17
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=120.28 Aligned_cols=68 Identities=24% Similarity=0.429 Sum_probs=60.5
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhh
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSL 140 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 140 (237)
.|||++|||++++ +.++|+++||+|++++|||+++... ..+.+.|..||+||++|+||.+|+.|+...
T Consensus 2 ~d~Y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~~----~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g 69 (99)
T 2lgw_A 2 ASYYEILDVPRSA--SADDIKKAYRRKALQWHPDKNPDNK----EFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69 (99)
T ss_dssp CCHHHHSSSCTTS--CHHHHHHHHHHHHHHTSTTTCCSCC----HHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCccH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 5899999999986 7889999999999999999987653 245688999999999999999999998754
No 18
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=6.4e-16 Score=119.80 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=59.7
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHH
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLL 138 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 138 (237)
...|||++|||++++ +.++|+++||+|++++|||+++..+. +.+.|..||+||++|+||.+|+.|+.
T Consensus 15 ~~~~~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~ 81 (109)
T 2ctw_A 15 SGESLYHVLGLDKNA--TSDDIKKSYRKLALKYHPDKNPDNPE-----AADKFKEINNAHAILTDATKRNIYDK 81 (109)
T ss_dssp CSCCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTSTTCHH-----HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 357999999999974 89999999999999999999976422 45789999999999999999999985
No 19
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.2e-16 Score=120.77 Aligned_cols=70 Identities=24% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhc
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQ 141 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~ 141 (237)
...|||++|||++++ +.++|+++||+|++++|||++.+... +.+.|..|++||++|+||.+|+.|+..+.
T Consensus 18 ~~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 18 DTEDYYTLLGCDELS--SVEQILAEFKVRALECHPDKHPENPK-----AVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCHHHHTTCCTTS--CHHHHHHHHHHHHHTTCTTTCTTCST-----HHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 457999999999974 88899999999999999999986443 45789999999999999999999987653
No 20
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=114.72 Aligned_cols=64 Identities=25% Similarity=0.482 Sum_probs=57.6
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHh
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLS 139 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 139 (237)
..|||++|||+++ .+.++|+++||+|++++|||++... .+.|..||+||++|+||.+|+.|+..
T Consensus 7 ~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (92)
T 2o37_A 7 ETKLYDLLGVSPS--ANEQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILNDPQKREIYDQY 70 (92)
T ss_dssp CCHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCTTSTTCC--------HHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4799999999997 4889999999999999999998754 14789999999999999999999864
No 21
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.59 E-value=5.2e-16 Score=118.94 Aligned_cols=67 Identities=22% Similarity=0.461 Sum_probs=59.2
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhh
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSL 140 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 140 (237)
.|||++|||+++ .+.++|+++||+|++++|||++...+. +.+.+..||+||++|+||.+|+.|+...
T Consensus 3 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 69 (103)
T 1bq0_A 3 QDYYEILGVSKT--AEEREIRKAYKRLAMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLTDSQKRAAYDQYG 69 (103)
T ss_dssp CCSTTTTSSCSS--CCHHHHHHHHHHHHTTTCTTTCTTTCT-----HHHHHHHHTTTTTSTTCSHHHHHTTTST
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 599999999997 488999999999999999999986443 3467899999999999999999998643
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=113.35 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=55.7
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhH
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGL 135 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~ 135 (237)
...|||++|||++++ +.++|+++||+|++++|||++..... .+.|..||+||++|+||.+|+.
T Consensus 25 ~~~~~y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~~~------~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGA--SRDEVNKAYRKLAVLLHPDKCVAPGS------EDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTTCCCTTH------HHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCccH------HHHHHHHHHHHHHHCCcccccC
Confidence 457999999999974 88999999999999999999987543 3579999999999999999974
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.55 E-value=1.7e-15 Score=111.22 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=55.9
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHH
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYL 137 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yl 137 (237)
..++|++|||++++..+..+|+++||+|++++|||+.++ .+.|..||+||++|+||..|+.+.
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 358999999999976799999999999999999999653 257899999999999999999853
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.53 E-value=9.7e-16 Score=120.08 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=57.1
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHH
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLL 138 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 138 (237)
.+||++|||+++++.+.++|+++||+|++++|||+.+.. +.|..||+||++|+||.+|+.|..
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~---------e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---------EKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT---------TTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccH---------HHHHHHHHHHHHHCCHHHHHHhhh
Confidence 689999999999877669999999999999999997652 578999999999999999999974
No 25
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.52 E-value=1e-14 Score=122.65 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=58.9
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHh
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLS 139 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 139 (237)
.|||++|||++++ +.++|+++||+|++++|||++++.+. +.+.|..|++||++|+||.+|+.|+..
T Consensus 2 ~~~y~~l~~~~~a--~~~~ik~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~~L~~~~~r~~yd~~ 67 (210)
T 3apq_A 2 QNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNNPN-----AHGDFLKINRAYEVLKDEDLRKKYDKY 67 (210)
T ss_dssp CCHHHHHTCCTTC--CHHHHHHHHHHHHHHHCGGGCTTCTT-----HHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCChH-----HHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 5899999999974 89999999999999999999976543 347789999999999999999999864
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.49 E-value=3.8e-15 Score=124.67 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=55.8
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHH
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLL 138 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 138 (237)
..|||++|||+++++.|.++|+++||++++++|||++++. +.|..||+||++|+||.+|+.|+.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~---------e~F~~I~~AYevLsdp~kR~~YD~ 73 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---------EKMKKMNTLYKKMEDGVKYAHQPD 73 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC---------TTTTHHHHHHHHHHHHHHHHTSCG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH---------HHHHHHHHHHHHhCCHHHHHHHhc
Confidence 4699999999999877789999999999999999997652 568999999999999999999975
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.46 E-value=1.7e-14 Score=121.51 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=59.5
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHH
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y 136 (237)
.|||++|||++. ++..+|+++||++++++|||++.+.+.+ ..|.+.|..||+||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~--As~~eIKkAYRklal~~HPDK~~~~~~e--~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADL--VTPEQVKKVYRKAVLVVHPDKATGQPYE--QYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGG--SSHHHHHHHHHHHHHHTCGGGGSSCTTH--HHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCC--CCHHHHHHHHHHHHHHHCcCcCCCcchH--HHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 589999999987 5889999999999999999999876543 36789999999999999999999987
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.44 E-value=4e-14 Score=106.06 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhH
Q psy8325 64 DSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGL 135 (237)
Q Consensus 64 ~~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~ 135 (237)
....++|++|||++++ +.++|+++||+|++++|||++.... ..+.+.|..||+||++|+|+..|..
T Consensus 13 ~~~~~~y~vLgv~~~a--s~~eIKkaYrkla~~~HPDk~~~~~----~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 13 SILKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPENH----DIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp SCHHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSCH----HHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred ccHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCch----HHHHHHHHHHHHHHHHHHhhccccc
Confidence 3457999999999875 7889999999999999999986542 3467899999999999999887743
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.3e-13 Score=99.01 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchh
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLER 133 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~R 133 (237)
..++|++|||++. +.+.++|+++||+|++++|||+..+ + +.|..||+||++|+++..|
T Consensus 13 ~~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g~--~-------~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGGS--P-------FLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTCC--H-------HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCC--H-------HHHHHHHHHHHHHhhhhhc
Confidence 4689999999983 3589999999999999999999432 1 4789999999999998766
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.39 E-value=1.2e-13 Score=106.72 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=55.7
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSN--KNQEEQAISETYSSYLNKAYSILQNPL 131 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~--~~~~e~~~a~~~s~~In~AY~tL~dp~ 131 (237)
..|||++||++. .+..+||++||++++++||||+++ .++.++..|.+.|..|++||++|+||.
T Consensus 40 ~~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 369999999985 589999999999999999999874 356667788899999999999999985
No 31
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.35 E-value=6.5e-14 Score=127.65 Aligned_cols=66 Identities=20% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHh
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLS 139 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 139 (237)
..|||++|||++++ +.++|+++||+|++++|||++..+ .|.+.|..||+||++|+||.+|+.|+.-
T Consensus 27 ~~d~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 27 LKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPDVSKEN------DAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCCCCCCCh------HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 36999999999975 778999999999999999998754 2457899999999999999999999864
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.28 E-value=1.1e-12 Score=99.03 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQN 129 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~d 129 (237)
.+||++||+++.. +.++|+++||++++++|||++++.+.. ..|.+.|..|++||++|++
T Consensus 33 ~~~y~~Lgv~~~a--s~~eIKkAYRklal~~HPDK~~~~~~~--~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPCKATGQPYE--QYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSS--SHHHHHHHHHHHHHHTCHHHHTTSTTH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCchhH--hHHHHHHHHHHHHHHHHHh
Confidence 5899999999974 789999999999999999999765432 3577899999999999975
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.19 E-value=2.3e-12 Score=127.35 Aligned_cols=67 Identities=28% Similarity=0.447 Sum_probs=38.1
Q ss_pred CCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHH
Q psy8325 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLL 138 (237)
Q Consensus 65 ~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 138 (237)
...|||++|||++++ +.++|+++||+|++++|||++++.+. +.+.|..|++||++|+||.+|+.|+.
T Consensus 19 ~~~~~y~~lg~~~~a--~~~~i~~ay~~l~~~~hpd~~~~~~~-----~~~~f~~i~~ay~~L~~~~~r~~yd~ 85 (780)
T 3apo_A 19 HDQNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNNPN-----AHGDFLKINRAYEVLKDEDLRKKYDK 85 (780)
T ss_dssp ----CHHHHTCCTTC--CHHHHHHHHCC----------------------------CTHHHHHHSHHHHHHHTT
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCChH-----HHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 457999999999974 89999999999999999999865432 45788999999999999999999975
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.58 E-value=5.8e-08 Score=86.40 Aligned_cols=68 Identities=26% Similarity=0.445 Sum_probs=55.8
Q ss_pred CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHH
Q psy8325 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLL 138 (237)
Q Consensus 67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 138 (237)
.+||.++|+++.. +..++++.|+++...+|||++.. +.++..+.+.+..|++||++|+||.+|..|+.
T Consensus 382 ~~~y~~lg~~~~~--~~~~~~~~y~~~~l~~~pd~~~~--~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNA--KKQEIIKAYRKLALQWHPDNFQN--EEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTC--CTTHHHHHHHHHHHHSCGGGCCS--HHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccC--CHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 4899999999875 56799999999999999999865 34466778999999999999999999999974
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.5e-06 Score=60.16 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=42.4
Q ss_pred ChhhhcCCcccC-CCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q psy8325 68 NYYDLFDLKLTY-LINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNP 130 (237)
Q Consensus 68 nyf~llgl~~~f-~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp 130 (237)
.-+.+|||+++. ..+.++|+++||+|....|||+-.+. -..+.||.|++.|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~---------yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF---------YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHHHHH
Confidence 347899999861 24889999999999999999994331 3457899999998643
No 36
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=83.23 E-value=0.65 Score=29.96 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=21.4
Q ss_pred CCCCCcCCC-CC----CCCCccCcCCCcccCC
Q psy8325 37 ELKCWKCLK-NL----SGKNLFCQYCSSVQKP 63 (237)
Q Consensus 37 ~~~Cw~C~~-~~----~~~~~fC~~C~~~qp~ 63 (237)
...|+.|+. ++ ....+.|+.|+.+.+.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 347999988 55 3578999999998764
No 37
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=77.50 E-value=0.8 Score=39.68 Aligned_cols=23 Identities=26% Similarity=0.662 Sum_probs=18.3
Q ss_pred CCCCCcCCC-CC-------CCCCccCcCCCc
Q psy8325 37 ELKCWKCLK-NL-------SGKNLFCQYCSS 59 (237)
Q Consensus 37 ~~~Cw~C~~-~~-------~~~~~fC~~C~~ 59 (237)
..-||+||. ++ +...|+|++|+-
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~E 64 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCSE 64 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTCC
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcch
Confidence 347999999 45 567799999965
No 38
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=73.40 E-value=1.1 Score=38.99 Aligned_cols=22 Identities=27% Similarity=0.691 Sum_probs=18.4
Q ss_pred CCCCcCCCCC------CCCCccCcCCCc
Q psy8325 38 LKCWKCLKNL------SGKNLFCQYCSS 59 (237)
Q Consensus 38 ~~Cw~C~~~~------~~~~~fC~~C~~ 59 (237)
..|+.|+.++ ....+|||.|..
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 5799999987 367899999954
No 39
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=72.55 E-value=2.5 Score=28.30 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=19.3
Q ss_pred CCCcCCC-CC----CCCCccCcCCCcccC
Q psy8325 39 KCWKCLK-NL----SGKNLFCQYCSSVQK 62 (237)
Q Consensus 39 ~Cw~C~~-~~----~~~~~fC~~C~~~qp 62 (237)
.|+.|+. ++ .....+|..||.|..
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 7999987 33 467899999999763
No 40
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=72.29 E-value=5.5 Score=24.80 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy8325 183 IQATIDDLTKNVNASFEQKDFNQAKDLLIRMKY 215 (237)
Q Consensus 183 ~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlkY 215 (237)
....|+.++++|..|..+||++.++.+=.+|+.
T Consensus 6 ~~d~I~aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 6 SAANKDAIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 456788899999999999999999877666643
No 41
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=70.87 E-value=25 Score=24.90 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy8325 158 MEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLE 231 (237)
Q Consensus 158 meimE~rE~leea~~~~~l~~l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlkY~~~l~~~ik~k~~~l~ 231 (237)
-.|..+++.++.. ..-...+..+++.......... .++=..|...|.+=|||.+..+.+...+..|+
T Consensus 6 ~AI~~Lr~~~d~L------~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE 72 (79)
T 4abm_A 6 EAIQRLRDTEEML------SKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIE 72 (79)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566677766644 3334445556665554444444 66778999999999999999999998887764
No 42
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=70.00 E-value=1.1 Score=39.03 Aligned_cols=21 Identities=29% Similarity=0.754 Sum_probs=17.8
Q ss_pred CCCCcCCCCC------CCCCccCcCCC
Q psy8325 38 LKCWKCLKNL------SGKNLFCQYCS 58 (237)
Q Consensus 38 ~~Cw~C~~~~------~~~~~fC~~C~ 58 (237)
..|+.|+.++ ....+|||.|.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 5799999987 36789999995
No 43
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=66.84 E-value=3.2 Score=31.43 Aligned_cols=24 Identities=25% Similarity=0.677 Sum_probs=17.9
Q ss_pred CCCCcCCCCC--CCCCc-cCcCCCccc
Q psy8325 38 LKCWKCLKNL--SGKNL-FCQYCSSVQ 61 (237)
Q Consensus 38 ~~Cw~C~~~~--~~~~~-fC~~C~~~q 61 (237)
..|++|+... ..... .||.|+.-+
T Consensus 74 ~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 74 LECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp EECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred EEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 3899999964 35556 799998743
No 44
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.89 E-value=2.6 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=18.4
Q ss_pred CCCCCCcCCCCC----CCCCccCcCCCcc
Q psy8325 36 TELKCWKCLKNL----SGKNLFCQYCSSV 60 (237)
Q Consensus 36 ~~~~Cw~C~~~~----~~~~~fC~~C~~~ 60 (237)
....||.|+..+ ....+.|+.|+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 345799999854 2567899999864
No 45
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=64.72 E-value=1.5 Score=30.62 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCCCcCCCCC----CCCCccCcCCCcccCCCC
Q psy8325 38 LKCWKCLKNL----SGKNLFCQYCSSVQKPDS 65 (237)
Q Consensus 38 ~~Cw~C~~~~----~~~~~fC~~C~~~qp~~~ 65 (237)
..||.|++++ ....+.|++|+..-|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 3799999987 357899999999888754
No 46
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=64.70 E-value=1.5 Score=30.53 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=23.1
Q ss_pred CCCCcCCCCC----CCCCccCcCCCcccCCCC
Q psy8325 38 LKCWKCLKNL----SGKNLFCQYCSSVQKPDS 65 (237)
Q Consensus 38 ~~Cw~C~~~~----~~~~~fC~~C~~~qp~~~ 65 (237)
..||.|++++ ....+.|++|+..-|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 4899999987 357799999999888754
No 47
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=64.41 E-value=1.5 Score=30.59 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=22.9
Q ss_pred CCCCcCCCCC----CCCCccCcCCCcccCCCC
Q psy8325 38 LKCWKCLKNL----SGKNLFCQYCSSVQKPDS 65 (237)
Q Consensus 38 ~~Cw~C~~~~----~~~~~fC~~C~~~qp~~~ 65 (237)
..||.|++++ ....+.|++|+..-|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEET
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEecCcC
Confidence 4899999987 256799999999888754
No 48
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=63.14 E-value=1.9 Score=33.94 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=17.6
Q ss_pred CCCCcCCCCCC--C-----------C----------CccCcCCCccc
Q psy8325 38 LKCWKCLKNLS--G-----------K----------NLFCQYCSSVQ 61 (237)
Q Consensus 38 ~~Cw~C~~~~~--~-----------~----------~~fC~~C~~~q 61 (237)
..|++|++... . . .+.||.|++-+
T Consensus 71 ~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 71 FKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp EEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred EECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 38999998652 3 3 56799998844
No 49
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=62.33 E-value=1.5 Score=30.71 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCCCcCCCCC----CCCCccCcCCCcccCCCC
Q psy8325 38 LKCWKCLKNL----SGKNLFCQYCSSVQKPDS 65 (237)
Q Consensus 38 ~~Cw~C~~~~----~~~~~fC~~C~~~qp~~~ 65 (237)
..||.|++++ ....+.|++|+..-|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCCC
Confidence 4899999986 356899999999888754
No 50
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=62.14 E-value=11 Score=28.34 Aligned_cols=36 Identities=6% Similarity=0.253 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy8325 179 LQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMK 214 (237)
Q Consensus 179 l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlk 214 (237)
+....-..+.+....|..++..+||+.+...+.+|+
T Consensus 25 lL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~aHkLk 60 (119)
T 3myf_A 25 MLKMLLDSLPETVEKIQTALGQNDQATMLSTIHKLH 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444455555555555555555555544
No 51
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=61.28 E-value=2.8 Score=33.35 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=15.9
Q ss_pred CCCcCCCCCC--CCCccCcCCCc
Q psy8325 39 KCWKCLKNLS--GKNLFCQYCSS 59 (237)
Q Consensus 39 ~Cw~C~~~~~--~~~~fC~~C~~ 59 (237)
.|..|++... ...-+||.||+
T Consensus 134 ~C~~Cg~~~~~~~~~~~Cp~CG~ 156 (165)
T 2lcq_A 134 VCIGCGRKFSTLPPGGVCPDCGS 156 (165)
T ss_dssp EESSSCCEESSCCGGGBCTTTCC
T ss_pred ECCCCCCcccCCCCCCcCCCCCC
Confidence 7999998553 23459999987
No 52
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=60.31 E-value=3.8 Score=29.41 Aligned_cols=21 Identities=33% Similarity=0.918 Sum_probs=15.9
Q ss_pred CCCcCCCCCC-CCCccCcCCCc
Q psy8325 39 KCWKCLKNLS-GKNLFCQYCSS 59 (237)
Q Consensus 39 ~Cw~C~~~~~-~~~~fC~~C~~ 59 (237)
.|..|-.... ....|||+||.
T Consensus 17 rC~aCf~~t~~~~k~FCp~CGn 38 (79)
T 2con_A 17 RCHGCFKTTSDMNRVFCGHCGN 38 (79)
T ss_dssp ECSSSCCEESCSSCCSCSSSCC
T ss_pred EecccceECCCcccccccccCc
Confidence 6888877653 46788998876
No 53
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=59.36 E-value=3.1 Score=23.97 Aligned_cols=13 Identities=54% Similarity=1.620 Sum_probs=9.5
Q ss_pred CCCcCCCCCCCCCccCcCCCc
Q psy8325 39 KCWKCLKNLSGKNLFCQYCSS 59 (237)
Q Consensus 39 ~Cw~C~~~~~~~~~fC~~C~~ 59 (237)
.||+| +.|..|..
T Consensus 3 tcwsc--------lvcaacsv 15 (31)
T 2lbz_A 3 TCWSC--------LVCAACSV 15 (31)
T ss_dssp CTTGG--------GGGGGCCS
T ss_pred cHHHH--------HHHHHhHH
Confidence 58988 56777754
No 54
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=59.15 E-value=2.1 Score=29.74 Aligned_cols=28 Identities=25% Similarity=0.158 Sum_probs=22.9
Q ss_pred CCCCcCCCCC----CCCCccCcCCCcccCCCC
Q psy8325 38 LKCWKCLKNL----SGKNLFCQYCSSVQKPDS 65 (237)
Q Consensus 38 ~~Cw~C~~~~----~~~~~fC~~C~~~qp~~~ 65 (237)
..||.|.+++ ....+.|+.|+..-|+..
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccccCCC
Confidence 4899999987 256899999999888754
No 55
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=54.79 E-value=2.6 Score=34.55 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=20.1
Q ss_pred CCCCCcCCCCC---CCCCccCcCCCcc
Q psy8325 37 ELKCWKCLKNL---SGKNLFCQYCSSV 60 (237)
Q Consensus 37 ~~~Cw~C~~~~---~~~~~fC~~C~~~ 60 (237)
++.|++|++.+ ....++|+.|+..
T Consensus 42 Y~ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 42 YYRCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp EEECTTSCCCEEEETTTEEEETTTTEE
T ss_pred ehhchhhCCEeeeCCCCeEECCCCCCC
Confidence 56899999977 3567999999987
No 56
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=54.56 E-value=4.2 Score=29.36 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=14.4
Q ss_pred CCCcCCCCC------CCCCccCcCCCcccC
Q psy8325 39 KCWKCLKNL------SGKNLFCQYCSSVQK 62 (237)
Q Consensus 39 ~Cw~C~~~~------~~~~~fC~~C~~~qp 62 (237)
.||.|+.++ ....+||..|+.+..
T Consensus 33 fCPeCgq~Le~lkACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 33 LCPDCRQPLQVLKACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp ECSSSCSCCCEEEETTEEEECCTTTTCCCC
T ss_pred cCcchhhHHHHHHhcCCcCeeeccCCCEee
Confidence 667776665 134567777766543
No 57
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=53.53 E-value=45 Score=24.61 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHH--------HHHHHHHHHHHHHhccccHHHHHHHHHHHHh-HHHHHHHHHHHHhh
Q psy8325 172 SEEDLEKLQTLIQ--------ATIDDLTKNVNASFEQKDFNQAKDLLIRMKY-FTTLVSKVRDKKNQ 229 (237)
Q Consensus 172 ~~~~l~~l~~~~~--------~~i~~~~~~l~~~f~~~d~~~A~~~l~rlkY-~~~l~~~ik~k~~~ 229 (237)
+.+.+..+.-.++ ..+..+...+..+...++++.+...+..+.= |.+..+.++.++..
T Consensus 55 d~~~~~~~aH~LKGsa~~lG~~~l~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 121 (125)
T 2a0b_A 55 DKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 121 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444 2555666666666666777777777666653 55555666655543
No 58
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.38 E-value=6.5 Score=25.85 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.6
Q ss_pred CCCCcCCCCCCCCCccCcCCCcc
Q psy8325 38 LKCWKCLKNLSGKNLFCQYCSSV 60 (237)
Q Consensus 38 ~~Cw~C~~~~~~~~~fC~~C~~~ 60 (237)
..|+.|+..++...-.|..|+..
T Consensus 15 ~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEECTTCSSCSSSSSC
T ss_pred ccCCCCCCcCCCCceecCCCCCc
Confidence 47999999888888999999874
No 59
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=51.97 E-value=9.5 Score=28.73 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=22.6
Q ss_pred CCCCCcCCCCC--CC------CCccCcCCCcccCCCC
Q psy8325 37 ELKCWKCLKNL--SG------KNLFCQYCSSVQKPDS 65 (237)
Q Consensus 37 ~~~Cw~C~~~~--~~------~~~fC~~C~~~qp~~~ 65 (237)
-..|+.|+..+ .. ..+.|..|+...++..
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 35899999976 12 2599999999998865
No 60
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=51.93 E-value=6.3 Score=37.76 Aligned_cols=48 Identities=6% Similarity=0.118 Sum_probs=32.4
Q ss_pred CCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8325 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 126 (237)
Q Consensus 66 ~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~t 126 (237)
..+||.+||++-+-.--...|+++||++++.-+++. +...+|..|+.+
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~~-------------~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQR-------------HRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSHH-------------HHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCChH-------------HHHHHHHHhccc
Confidence 345889999965421111459999999999665551 456778888765
No 61
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=51.19 E-value=15 Score=28.98 Aligned_cols=53 Identities=8% Similarity=0.159 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHH--------HHHHHHHHHHHHHhccccHHHHHHHHHHHH-hHHHHHHHHH
Q psy8325 172 SEEDLEKLQTLIQ--------ATIDDLTKNVNASFEQKDFNQAKDLLIRMK-YFTTLVSKVR 224 (237)
Q Consensus 172 ~~~~l~~l~~~~~--------~~i~~~~~~l~~~f~~~d~~~A~~~l~rlk-Y~~~l~~~ik 224 (237)
+.+.+..+.-.++ .++..+...|..+...++.+.+...+..++ -|.++...++
T Consensus 70 D~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~ 131 (153)
T 3us6_A 70 DFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLE 131 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666 488888888999899999998887766654 3444444443
No 62
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=50.60 E-value=6 Score=26.81 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=16.3
Q ss_pred CCCCcCCCCCCCCCccCcCCCc
Q psy8325 38 LKCWKCLKNLSGKNLFCQYCSS 59 (237)
Q Consensus 38 ~~Cw~C~~~~~~~~~fC~~C~~ 59 (237)
..|++|+.... +...|+.||.
T Consensus 31 ~~c~~cGe~~~-~H~vc~~CG~ 51 (60)
T 3v2d_5 31 VPCPECKAMKP-PHTVCPECGY 51 (60)
T ss_dssp EECTTTCCEEC-TTSCCTTTCE
T ss_pred eECCCCCCeec-ceEEcCCCCc
Confidence 47999998643 6788999974
No 63
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=49.54 E-value=9.7 Score=33.93 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=20.2
Q ss_pred CCCCCcCCCC---C----CCCCccCcCCCcccC
Q psy8325 37 ELKCWKCLKN---L----SGKNLFCQYCSSVQK 62 (237)
Q Consensus 37 ~~~Cw~C~~~---~----~~~~~fC~~C~~~qp 62 (237)
...|+.|+.. + .....+|..||.|..
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 3479999883 3 356899999999875
No 64
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=49.48 E-value=15 Score=27.87 Aligned_cols=38 Identities=8% Similarity=0.240 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy8325 177 EKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMK 214 (237)
Q Consensus 177 ~~l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlk 214 (237)
.++....-..+.+....|..++..+||+.+...+.+|+
T Consensus 32 ~elL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~aHkLk 69 (123)
T 3iqt_A 32 RDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLH 69 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555566666666667777777777777777777665
No 65
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=49.05 E-value=11 Score=24.94 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=18.6
Q ss_pred CCCCCCcCCCCCC----CCCccCcCCCcc
Q psy8325 36 TELKCWKCLKNLS----GKNLFCQYCSSV 60 (237)
Q Consensus 36 ~~~~Cw~C~~~~~----~~~~fC~~C~~~ 60 (237)
....||.|+..+. ...+.|+.|+..
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 3568999998542 467899999874
No 66
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=48.09 E-value=12 Score=29.18 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=23.7
Q ss_pred cCCCCCCcCCCCCC-C-------CCccCcCCCcccCCCCC
Q psy8325 35 HTELKCWKCLKNLS-G-------KNLFCQYCSSVQKPDSQ 66 (237)
Q Consensus 35 ~~~~~Cw~C~~~~~-~-------~~~fC~~C~~~qp~~~~ 66 (237)
+.-..|+.|+..+. . ..|.|+.|+...++...
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~~ 61 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSP 61 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSCS
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCCc
Confidence 34558999999762 1 14999999998887653
No 67
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=47.65 E-value=8.1 Score=30.39 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=20.3
Q ss_pred CCCCCCcCCCCC---CCCCccCcCCCccc
Q psy8325 36 TELKCWKCLKNL---SGKNLFCQYCSSVQ 61 (237)
Q Consensus 36 ~~~~Cw~C~~~~---~~~~~fC~~C~~~q 61 (237)
.-+.||.|+..- ....+.||-|+.--
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecCCeEECCcccccc
Confidence 457999999864 36689999998743
No 68
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=47.17 E-value=6.3 Score=31.92 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=15.7
Q ss_pred CCCcCCCCC-CCCCccCcCCCc
Q psy8325 39 KCWKCLKNL-SGKNLFCQYCSS 59 (237)
Q Consensus 39 ~Cw~C~~~~-~~~~~fC~~C~~ 59 (237)
.|.+||... ...+-.||.|+.
T Consensus 140 ~C~~CG~i~~~~~p~~CP~Cg~ 161 (170)
T 3pwf_A 140 ICPICGYTAVDEAPEYCPVCGA 161 (170)
T ss_dssp ECTTTCCEEESCCCSBCTTTCC
T ss_pred EeCCCCCeeCCCCCCCCCCCCC
Confidence 699999854 233449999987
No 69
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=46.77 E-value=7.8 Score=26.21 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=16.6
Q ss_pred CCCCcCCCCCCCCCccCcCCCc
Q psy8325 38 LKCWKCLKNLSGKNLFCQYCSS 59 (237)
Q Consensus 38 ~~Cw~C~~~~~~~~~fC~~C~~ 59 (237)
..|++|+... .+...|++||.
T Consensus 31 ~~c~~cG~~~-~pH~vc~~CG~ 51 (60)
T 2zjr_Z 31 TECPQCHGKK-LSHHICPNCGY 51 (60)
T ss_dssp EECTTTCCEE-CTTBCCTTTCB
T ss_pred eECCCCCCEe-CCceEcCCCCc
Confidence 3799999874 46789999984
No 70
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=46.39 E-value=7.3 Score=34.37 Aligned_cols=22 Identities=27% Similarity=0.724 Sum_probs=17.7
Q ss_pred CCCCcCCCCC--------CCCCccCcCCCc
Q psy8325 38 LKCWKCLKNL--------SGKNLFCQYCSS 59 (237)
Q Consensus 38 ~~Cw~C~~~~--------~~~~~fC~~C~~ 59 (237)
..|+.|+.++ ....+|||.|.+
T Consensus 252 ~pC~~CGt~I~~~~~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGENSRMTYFCPHCQK 281 (287)
T ss_dssp SBCTTTCCBCEEECSSTTCCCEEECTTTSC
T ss_pred CCCCCCCCEEEEEEecCCCCCEEECCCccc
Confidence 3899999876 256899999965
No 71
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=46.30 E-value=8.9 Score=26.75 Aligned_cols=21 Identities=24% Similarity=0.646 Sum_probs=17.5
Q ss_pred CCCcCCCCC---CCCCccCcCCCc
Q psy8325 39 KCWKCLKNL---SGKNLFCQYCSS 59 (237)
Q Consensus 39 ~Cw~C~~~~---~~~~~fC~~C~~ 59 (237)
.|..|+..+ ......|+.|+.
T Consensus 30 ~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 30 ICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp ECSSSCCEECCCTTSTTCCSSSCC
T ss_pred ECCCCCCcceeCCCCCccCCCCCc
Confidence 799999973 356789999998
No 72
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=44.10 E-value=14 Score=25.07 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=17.5
Q ss_pred CCCCCcCCCCCCCCCccCcCCCcccCC
Q psy8325 37 ELKCWKCLKNLSGKNLFCQYCSSVQKP 63 (237)
Q Consensus 37 ~~~Cw~C~~~~~~~~~fC~~C~~~qp~ 63 (237)
-..|.+|+.-.. .-.||.||.....
T Consensus 6 mr~C~~CgvYTL--k~~CP~CG~~T~~ 30 (60)
T 2apo_B 6 MKKCPKCGLYTL--KEICPKCGEKTVI 30 (60)
T ss_dssp CEECTTTCCEES--SSBCSSSCSBCBC
T ss_pred ceeCCCCCCEec--cccCcCCCCcCCC
Confidence 347999987443 6679999885433
No 73
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=42.65 E-value=5.8 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCCCCcCCCCC----CCCCccCcCCCcccCC
Q psy8325 37 ELKCWKCLKNL----SGKNLFCQYCSSVQKP 63 (237)
Q Consensus 37 ~~~Cw~C~~~~----~~~~~fC~~C~~~qp~ 63 (237)
...|++|++.. ......|+.|+....-
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecC
Confidence 44899999954 3667889999987643
No 74
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=42.11 E-value=6.8 Score=32.54 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=16.0
Q ss_pred CCCcCCCCCC-CCCccCcCCCc
Q psy8325 39 KCWKCLKNLS-GKNLFCQYCSS 59 (237)
Q Consensus 39 ~Cw~C~~~~~-~~~~fC~~C~~ 59 (237)
.|..||.... ..+..||.|+.
T Consensus 173 ~C~~CG~i~~g~~p~~CP~C~~ 194 (202)
T 1yuz_A 173 LCPICGYIHKGEDFEKCPICFR 194 (202)
T ss_dssp ECSSSCCEEESSCCSBCTTTCC
T ss_pred EECCCCCEEcCcCCCCCCCCCC
Confidence 7999998643 33469999987
No 75
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=41.43 E-value=22 Score=24.45 Aligned_cols=26 Identities=23% Similarity=0.597 Sum_probs=18.8
Q ss_pred cCCCCCCcCCCCCCCCCccCcCCCccc
Q psy8325 35 HTELKCWKCLKNLSGKNLFCQYCSSVQ 61 (237)
Q Consensus 35 ~~~~~Cw~C~~~~~~~~~fC~~C~~~q 61 (237)
.....|+.|...+.-..|.| .|+.+-
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~F 38 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKC-KCGSTF 38 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEEC-TTSCEE
T ss_pred CcCCcChhhCCcccccCeEe-ecCCEe
Confidence 34558999999875456888 787643
No 76
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=40.87 E-value=7 Score=30.75 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.0
Q ss_pred CCCCcCCCCCCCCCccCcCCCc
Q psy8325 38 LKCWKCLKNLSGKNLFCQYCSS 59 (237)
Q Consensus 38 ~~Cw~C~~~~~~~~~fC~~C~~ 59 (237)
..|.+|+...-.+..+|+.|+.
T Consensus 48 ~rC~~CG~~~~PPr~~Cp~C~s 69 (145)
T 3irb_A 48 SKCSKCGRIFVPARSYCEHCFV 69 (145)
T ss_dssp EECTTTCCEEESCCSEETTTTE
T ss_pred EEeCCCCcEEcCchhhCcCCCC
Confidence 4799999977556789999986
No 77
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=40.68 E-value=19 Score=28.69 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=23.0
Q ss_pred CCCCCcCCCCC-------CCCCccCcCCCcccCCCCCCC
Q psy8325 37 ELKCWKCLKNL-------SGKNLFCQYCSSVQKPDSQSN 68 (237)
Q Consensus 37 ~~~Cw~C~~~~-------~~~~~fC~~C~~~qp~~~~~n 68 (237)
...|+.|+.|= ....+.|..||+..|++....
T Consensus 104 yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k~ 142 (148)
T 2d74_B 104 YVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLLE 142 (148)
T ss_dssp HSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC---
T ss_pred EEECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchhh
Confidence 46899999972 245678999999999876544
No 78
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=40.60 E-value=15 Score=29.77 Aligned_cols=33 Identities=27% Similarity=0.633 Sum_probs=24.1
Q ss_pred CCCCCcCCCCC--CCCCccCcCCCcccCCCCCCCh
Q psy8325 37 ELKCWKCLKNL--SGKNLFCQYCSSVQKPDSQSNY 69 (237)
Q Consensus 37 ~~~Cw~C~~~~--~~~~~fC~~C~~~qp~~~~~ny 69 (237)
...|..|+.++ ....+.||.|+.+-+-.-..+|
T Consensus 140 ~a~~~~~g~~m~~~~~~~~cp~~g~~e~RKva~~y 174 (179)
T 3m7n_A 140 RALCSNCKTEMVREGDILKCPECGRVEKRKISTDY 174 (179)
T ss_dssp ECBCTTTCCBCEECSSSEECSSSCCEECCCBCTTT
T ss_pred EecccccCCceEECCCEEECCCCCCEEEEeccccc
Confidence 44799999976 2489999999997764333344
No 79
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=40.45 E-value=11 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=32.4
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCC
Q psy8325 70 YDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNK 105 (237)
Q Consensus 70 f~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~ 105 (237)
|..||.|-.-+||-+.|-.++..=|..-|||.|.-.
T Consensus 94 ~~WLG~Pd~~sidg~t~l~a~lt~sl~nhP~~f~~~ 129 (136)
T 1xs0_A 94 LTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFR 129 (136)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHHTHHHHSTTSCCEE
T ss_pred eEecCCCChhhcccHHHHHHHHhcchhcCccccccc
Confidence 778999888889999999999999999999999643
No 80
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=37.92 E-value=9.2 Score=33.93 Aligned_cols=23 Identities=4% Similarity=-0.137 Sum_probs=14.7
Q ss_pred CCCCC--cCCCCC------CCCCccCcCCCc
Q psy8325 37 ELKCW--KCLKNL------SGKNLFCQYCSS 59 (237)
Q Consensus 37 ~~~Cw--~C~~~~------~~~~~fC~~C~~ 59 (237)
...|. .|+.++ ..+.+|||.|..
T Consensus 247 g~pC~~~~CG~~I~~~~~~gR~t~~CP~CQ~ 277 (310)
T 3twl_A 247 KKPGKAFVDGKKIDFITAGGRTTAYVPELQK 277 (310)
T ss_dssp SCTTSCEETTEECEECCE------ECTTTCC
T ss_pred CCCCCCCCCCCeEEEEEECCcccEECCCCcC
Confidence 34788 999976 367899999965
No 81
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=35.11 E-value=9.7 Score=30.02 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=18.0
Q ss_pred CCCCcCCCCCCCCCccCcCCCcc
Q psy8325 38 LKCWKCLKNLSGKNLFCQYCSSV 60 (237)
Q Consensus 38 ~~Cw~C~~~~~~~~~fC~~C~~~ 60 (237)
..|.+|+...-.+..+|+.|+.-
T Consensus 48 ~rC~~CG~~~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp EECTTTCCEEESCCSEETTTTEE
T ss_pred EEECCCCcEEeCCCCCCCCCCCC
Confidence 37999998765567889999763
No 82
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.67 E-value=30 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=19.2
Q ss_pred cCCCCCCcCCCCCCCCCccCcCCCccc
Q psy8325 35 HTELKCWKCLKNLSGKNLFCQYCSSVQ 61 (237)
Q Consensus 35 ~~~~~Cw~C~~~~~~~~~fC~~C~~~q 61 (237)
.....|+.|.+.+.-..|.| .|+.+-
T Consensus 23 ~~~~RC~~C~kkvgL~~f~C-rCg~~F 48 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKC-RCGSTF 48 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEEC-TTSCEE
T ss_pred ccCccchhhcCcccccceEe-ccCCEe
Confidence 44568999999876557888 687643
No 83
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=34.36 E-value=1.8e+02 Score=23.44 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhccccHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy8325 175 DLEKLQTLIQATIDDLTKNV---NASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQL 230 (237)
Q Consensus 175 ~l~~l~~~~~~~i~~~~~~l---~~~f~~~d~~~A~~~l~rlkY~~~l~~~ik~k~~~l 230 (237)
+|..+..++..+...+...+ ..+|..+|.+.|.+...+=.++.++..+|.+....+
T Consensus 8 ~L~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~l 66 (235)
T 1sum_B 8 KVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEV 66 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333 344556777778777777777888888777766554
No 84
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.33 E-value=34 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.535 Sum_probs=18.9
Q ss_pred cCCCCCCcCCCCCCCCCccCcCCCccc
Q psy8325 35 HTELKCWKCLKNLSGKNLFCQYCSSVQ 61 (237)
Q Consensus 35 ~~~~~Cw~C~~~~~~~~~fC~~C~~~q 61 (237)
.....|+.|.+.+.-..|.| .|+.+-
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~F 38 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMC-RCGTTF 38 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEEC-SSSCEE
T ss_pred CcCCcChhhCCccCccCEEe-ecCCEe
Confidence 44568999999875457888 687643
No 85
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=34.04 E-value=22 Score=27.97 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=15.2
Q ss_pred CCCCCcCCCCC-------CCCCccCcCCCcccCCC
Q psy8325 37 ELKCWKCLKNL-------SGKNLFCQYCSSVQKPD 64 (237)
Q Consensus 37 ~~~Cw~C~~~~-------~~~~~fC~~C~~~qp~~ 64 (237)
...|+.|+.|= ......|..||+..|+.
T Consensus 103 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~ 137 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVK 137 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCSTTTSSCCC--------
T ss_pred eeECCCCCCcCcEEEEeCCeEEEEecCCCCCCccC
Confidence 56899999972 24567899999988764
No 86
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=33.90 E-value=1.7e+02 Score=23.22 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHH----HHHHHHHHHhHHHHHHHHHHHHhh
Q psy8325 174 EDLEKLQTLIQATIDDLTKNVNASFEQKDFNQ----AKDLLIRMKYFTTLVSKVRDKKNQ 229 (237)
Q Consensus 174 ~~l~~l~~~~~~~i~~~~~~l~~~f~~~d~~~----A~~~l~rlkY~~~l~~~ik~k~~~ 229 (237)
.+|++-...++..-..+...|..+..+|+.+. |+.+++.-+|..++.. .+-.+..
T Consensus 24 r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~-~~a~l~~ 82 (179)
T 2gd5_A 24 RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYA-SKAHMNS 82 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34566666677777778888888888999884 6788888888887776 4444433
No 87
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=33.30 E-value=8.4 Score=31.55 Aligned_cols=30 Identities=20% Similarity=0.550 Sum_probs=19.9
Q ss_pred CCCCcCCCCCC--CCCccCcCCCcccCCCCCCChhhhc
Q psy8325 38 LKCWKCLKNLS--GKNLFCQYCSSVQKPDSQSNYYDLF 73 (237)
Q Consensus 38 ~~Cw~C~~~~~--~~~~fC~~C~~~qp~~~~~nyf~ll 73 (237)
-.|..||.... ..+-.||.|++- .++|+.+
T Consensus 156 ~~C~~CG~~~~g~~~p~~CP~C~~~------k~~f~~~ 187 (191)
T 1lko_A 156 WRCRNCGYVHEGTGAPELCPACAHP------KAHFELL 187 (191)
T ss_dssp EEETTTCCEEEEEECCSBCTTTCCB------GGGEEEC
T ss_pred EEECCCCCEeeCCCCCCCCCCCcCC------HHHHHhH
Confidence 37999998642 222399999872 3666654
No 88
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=32.85 E-value=1.6e+02 Score=22.41 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHH--------HHHHHHHHHHHHHhccccHHHHHHHHHHHH-hHHHHHHHHHHH
Q psy8325 172 SEEDLEKLQTLIQ--------ATIDDLTKNVNASFEQKDFNQAKDLLIRMK-YFTTLVSKVRDK 226 (237)
Q Consensus 172 ~~~~l~~l~~~~~--------~~i~~~~~~l~~~f~~~d~~~A~~~l~rlk-Y~~~l~~~ik~k 226 (237)
+.+.+..+.-.++ .++......|..+...++++.+...+.+++ .|.++...++..
T Consensus 71 D~~~l~~~aH~LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~ 134 (149)
T 1yvi_A 71 NFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTM 134 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665 478888888888888999999888887775 455555555543
No 89
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=32.00 E-value=12 Score=30.40 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=19.6
Q ss_pred CCCCCc--CCCCCC---CCCccCcCCCccc
Q psy8325 37 ELKCWK--CLKNLS---GKNLFCQYCSSVQ 61 (237)
Q Consensus 37 ~~~Cw~--C~~~~~---~~~~fC~~C~~~q 61 (237)
++.|++ |++.+. ...+.|+.|+..-
T Consensus 43 Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQNGLYRCEKCDTEF 72 (181)
T ss_dssp EEBCCSTTCCCBCEEETTTEEEETTTTEEE
T ss_pred ECCCCchhcCCccccCCCCeEECCCCCCcC
Confidence 568999 999873 3568999998754
No 90
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=31.45 E-value=1.9e+02 Score=22.78 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhccccHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy8325 175 DLEKLQTLIQATIDDLTKNV---NASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQL 230 (237)
Q Consensus 175 ~l~~l~~~~~~~i~~~~~~l---~~~f~~~d~~~A~~~l~rlkY~~~l~~~ik~k~~~l 230 (237)
+|..+..++..+...+...+ ..+|..+|.+.|.+...+=.+..++..+|.+....+
T Consensus 8 ~l~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~l 66 (216)
T 2i0m_A 8 ELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARL 66 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333 344556777777777777777777777777766554
No 91
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=30.68 E-value=13 Score=30.74 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=20.5
Q ss_pred CCCCCcCCCC---C----CCCCccCcCCCcccC
Q psy8325 37 ELKCWKCLKN---L----SGKNLFCQYCSSVQK 62 (237)
Q Consensus 37 ~~~Cw~C~~~---~----~~~~~fC~~C~~~qp 62 (237)
...|+.|+.. + .....+|..||.|..
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 4479999982 2 478899999999864
No 92
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=29.32 E-value=14 Score=33.13 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=19.0
Q ss_pred CCCCCcCCC-C--C----CCCCccCcCCCccc
Q psy8325 37 ELKCWKCLK-N--L----SGKNLFCQYCSSVQ 61 (237)
Q Consensus 37 ~~~Cw~C~~-~--~----~~~~~fC~~C~~~q 61 (237)
...|+.|+. + + .....+|..||.|.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl 52 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCc
Confidence 347999996 2 2 47889999999874
No 93
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.31 E-value=12 Score=24.89 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCCCcCCCCC--CCCCccCc--CCCcccCCCC
Q psy8325 38 LKCWKCLKNL--SGKNLFCQ--YCSSVQKPDS 65 (237)
Q Consensus 38 ~~Cw~C~~~~--~~~~~fC~--~C~~~qp~~~ 65 (237)
..|+.|++++ ....+.|+ .|+..-|+..
T Consensus 11 L~CP~c~~~L~~~~~~L~C~~~~c~~~YPI~d 42 (56)
T 2kpi_A 11 LACPACHAPLEERDAELICTGQDCGLAYPVRD 42 (56)
T ss_dssp CCCSSSCSCEEEETTEEEECSSSCCCEEEEET
T ss_pred eeCCCCCCcceecCCEEEcCCcCCCcEEeeEC
Confidence 3899999986 35889999 8998877653
No 94
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.00 E-value=11 Score=28.13 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=6.0
Q ss_pred CCCCcCCCCC
Q psy8325 38 LKCWKCLKNL 47 (237)
Q Consensus 38 ~~Cw~C~~~~ 47 (237)
..||.|..++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 3666666654
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.40 E-value=2.2e+02 Score=26.06 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=32.9
Q ss_pred HHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhHHHHHHHHHHHHhhccc
Q psy8325 164 NEELDEASS-EEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLEL 232 (237)
Q Consensus 164 rE~leea~~-~~~l~~l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlkY~~~l~~~ik~k~~~l~~ 232 (237)
++.+..+.+ ...+.++..+++.+|..+...+...| ..|+-|++..+.+..++..||.
T Consensus 98 k~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~------------~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 98 RGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV------------QRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 34467777777777777777776544 2455555555555555555543
No 96
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=27.23 E-value=26 Score=23.71 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=15.8
Q ss_pred CCCCcCCCCCCCCCccCcCCCccc
Q psy8325 38 LKCWKCLKNLSGKNLFCQYCSSVQ 61 (237)
Q Consensus 38 ~~Cw~C~~~~~~~~~fC~~C~~~q 61 (237)
..|.+|+.-+. .-.||.||...
T Consensus 6 r~C~~Cg~YTL--k~~CP~CG~~t 27 (60)
T 2aus_D 6 RKCPKCGRYTL--KETCPVCGEKT 27 (60)
T ss_dssp EECTTTCCEES--SSBCTTTCSBC
T ss_pred eECCCCCCEEc--cccCcCCCCcc
Confidence 47999986443 56799998743
No 97
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=26.81 E-value=26 Score=22.86 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=14.9
Q ss_pred CCCcCCCCCCCCCccCcCCCcccCC
Q psy8325 39 KCWKCLKNLSGKNLFCQYCSSVQKP 63 (237)
Q Consensus 39 ~Cw~C~~~~~~~~~fC~~C~~~qp~ 63 (237)
.|-+|.. ....-||.+|.+.-|+
T Consensus 24 dcs~C~~--~p~SDFC~gcs~~pp~ 46 (53)
T 2kmz_A 24 DCASCRA--RPHSDFCLGCAAAPPA 46 (53)
T ss_dssp CSTTCSS--CCCCHHHHHHSSCSSC
T ss_pred ccccCCC--CcccccccccccCCCC
Confidence 3444443 4678999999665544
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.66 E-value=1e+02 Score=29.45 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcCCCccccccCCCHHHHHHHHH
Q psy8325 83 NVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKLLMEILM 162 (237)
Q Consensus 83 ~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~e~~~~~d~efLmeimE 162 (237)
..+|+..|-++++.. ...++.++.-|+.|+.-+..+. ..+- .......++=..+..
T Consensus 66 INELKnqLEdlsKns----------------Kdseqy~k~~~E~Lr~rq~q~~-dNdN-------tynE~S~ELRRrIqy 121 (562)
T 3ghg_A 66 INKLKNSLFEYQKNN----------------KDSHSLTTNIMEILRGDFSSAN-NRDN-------TYNRVSEDLRSRIEV 121 (562)
T ss_dssp HHHHHHHHTHHHHHH----------------HHHHHHHHHHHHTTSSHHHHHH-HHHH-------HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc----------------hhHHHHHHHHHHHHHHHHHhhh-ccch-------hHHHHHHHHHHHHHH
Confidence 446777777665442 2334555666666665444443 1110 011222333344555
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy8325 163 LNEELDEAS-SEEDLEKLQTLIQATIDDLTKNVNASFEQ--KDFNQAKDLLIRMKYFTTLVSKVRDKKN 228 (237)
Q Consensus 163 ~rE~leea~-~~~~l~~l~~~~~~~i~~~~~~l~~~f~~--~d~~~A~~~l~rlkY~~~l~~~ik~k~~ 228 (237)
|+++|++-- ....|+...+++..+|+.++..|...++. +--..+...-+-+++|..++..+.+-..
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhh
Confidence 566555432 12223333334444555555555444431 1111111122335677777777765543
No 99
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=26.63 E-value=24 Score=30.30 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=20.9
Q ss_pred CCCCCCcCCCCC----CCCCccCcCCCcccCC
Q psy8325 36 TELKCWKCLKNL----SGKNLFCQYCSSVQKP 63 (237)
Q Consensus 36 ~~~~Cw~C~~~~----~~~~~fC~~C~~~qp~ 63 (237)
....|+.|+.++ ......|++|+.+.=|
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~~yp 137 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRERYYP 137 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCEECC
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCEecC
Confidence 456899999876 3567899999875443
No 100
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=26.55 E-value=1.1e+02 Score=20.66 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhH
Q psy8325 183 IQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYF 216 (237)
Q Consensus 183 ~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlkY~ 216 (237)
+...+..+.+++.++-+.-+|+.|+.+=-+++-+
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L 55 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455667777777888888999996654444444
No 101
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.47 E-value=55 Score=31.29 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8325 176 LEKLQTLIQATIDDLTKNVNA 196 (237)
Q Consensus 176 l~~l~~~~~~~i~~~~~~l~~ 196 (237)
..++..+++.+|..+..+|..
T Consensus 108 ynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544444
No 102
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=26.43 E-value=93 Score=25.01 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=29.4
Q ss_pred HHHHHHhcCcchhhHHHHhhcCCC-ccc--c--ccCCCHHHHHHHHHHHHHHhc
Q psy8325 121 NKAYSILQNPLERGLYLLSLQNIS-IEE--D--TKGTDQKLLMEILMLNEELDE 169 (237)
Q Consensus 121 n~AY~tL~dp~~Ra~Yll~l~g~~-~~e--~--~~~~d~efLmeimE~rE~lee 169 (237)
.+-|.+=..|++.|.-.|.-.|.- +.. + -...+++-+.+++++|+.||.
T Consensus 46 a~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~~~e~~~~R~~lE~ 99 (222)
T 3ihu_A 46 VAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQETLDVLDVAERMTG 99 (222)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHHHHHHHHHHHHH
Confidence 333444444555555555555532 211 1 246788999999999998874
No 103
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.06 E-value=39 Score=23.03 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=16.7
Q ss_pred CCCCcCCCCC---CCCCccCcCCCc
Q psy8325 38 LKCWKCLKNL---SGKNLFCQYCSS 59 (237)
Q Consensus 38 ~~Cw~C~~~~---~~~~~fC~~C~~ 59 (237)
-.|-.|+..+ .....-|+.|+.
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EECCCCCCeeecCCCCceECCCCCc
Confidence 3799998876 246688999976
No 104
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=25.71 E-value=28 Score=27.29 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=21.2
Q ss_pred CCCCCcCCCCC-------CCCCccCcCCCcccCCC
Q psy8325 37 ELKCWKCLKNL-------SGKNLFCQYCSSVQKPD 64 (237)
Q Consensus 37 ~~~Cw~C~~~~-------~~~~~fC~~C~~~qp~~ 64 (237)
...|+.|+.|= ......|..||+..|+.
T Consensus 102 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~ 136 (138)
T 1nee_A 102 FVICHECNRPDTRIIREGRISLLKCEACGAKAPLK 136 (138)
T ss_dssp HHHHTCCSSCSSCCEEETTTTEEECSTTSCCCCSC
T ss_pred EEECCCCCCcCcEEEEcCCeEEEEccCCCCCcccC
Confidence 35799999972 24567899999988774
No 105
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.22 E-value=48 Score=21.99 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=6.5
Q ss_pred CCCCcCCCCC
Q psy8325 38 LKCWKCLKNL 47 (237)
Q Consensus 38 ~~Cw~C~~~~ 47 (237)
..||+|+.++
T Consensus 7 k~CP~C~~~I 16 (60)
T 1wd2_A 7 KECPKCHVTI 16 (60)
T ss_dssp CCCTTTCCCC
T ss_pred eECcCCCCee
Confidence 4677776665
No 106
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=25.19 E-value=19 Score=25.10 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=17.6
Q ss_pred CCCCCCcCCCCCCCCCccCcCCCcc
Q psy8325 36 TELKCWKCLKNLSGKNLFCQYCSSV 60 (237)
Q Consensus 36 ~~~~Cw~C~~~~~~~~~fC~~C~~~ 60 (237)
....|-+|...+ ..-.||+|+..
T Consensus 10 ~~~AC~~C~~~~--~~~~CPnC~s~ 32 (69)
T 1ryq_A 10 SEKACRHCHYIT--SEDRCPVCGSR 32 (69)
T ss_dssp -CEEETTTCBEE--SSSSCTTTCCC
T ss_pred hhhhHHhCCccc--cCCcCCCccCC
Confidence 345899999965 67899999853
No 107
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=24.55 E-value=17 Score=25.42 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCCcCCCCC----CCCCccCcCCCcccCCCCCCChhhhcCCcccCCCCHHHHHHHHHHHHHH
Q psy8325 39 KCWKCLKNL----SGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQ 96 (237)
Q Consensus 39 ~Cw~C~~~~----~~~~~fC~~C~~~qp~~~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~ 96 (237)
.|+ |+..+ ....--|+ ||....+....=|.+ -. |.++-+..=++||..
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~~----~~----d~~eA~e~~~~lqa~ 57 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFGR----AD----DFEEASELVRKLQEE 57 (71)
T ss_dssp EET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBSC----CS----SHHHHHHHHHHHSSC
T ss_pred ECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEEe----cC----CHHHHHHHHHHHHhh
Confidence 588 99865 46678898 999777766533332 11 344555554555444
No 108
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=24.42 E-value=70 Score=21.75 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy8325 174 EDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIR 212 (237)
Q Consensus 174 ~~l~~l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l~r 212 (237)
+.+.+|+..-..-+.+|.+.|.++ .+|+++|..+|++
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~--~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETC--GGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHH--TSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 445555555444555565555442 4788888777754
No 109
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=24.12 E-value=5.6 Score=30.37 Aligned_cols=49 Identities=14% Similarity=0.482 Sum_probs=29.5
Q ss_pred CCCCCcCCCCC-------CCCCccCcCCCcccCCCCCCChhhhcCCcccCCCCHHHHHHHHHHHH
Q psy8325 37 ELKCWKCLKNL-------SGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQ 94 (237)
Q Consensus 37 ~~~Cw~C~~~~-------~~~~~fC~~C~~~qp~~~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq 94 (237)
...|-+|+... +.....|..|+. ||...|..+...+....|++++|+++
T Consensus 59 ~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl---------~~~~~~~~rp~~~~~~~i~~r~r~~s 114 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRRNANGDPVCNACGL---------YYKLHNINRPLTMKKEGIQTRNRKMS 114 (115)
T ss_dssp TCCCTTTCCSCCSSCEECTTSCEECHHHHH---------HHHHHSSCCCGGGCCSSCCCCC----
T ss_pred cccCCCcCCCCcceeEECCCCCCcchHHHH---------HHHHhCCCCCccccccchhhcccccc
Confidence 44777777642 223456766654 78888887776666666777777664
No 110
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.09 E-value=24 Score=29.55 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=15.8
Q ss_pred CCCCcCCCC----C-CCCCccCcCCCcc
Q psy8325 38 LKCWKCLKN----L-SGKNLFCQYCSSV 60 (237)
Q Consensus 38 ~~Cw~C~~~----~-~~~~~fC~~C~~~ 60 (237)
..||.|+.. + .....+|.+|+.-
T Consensus 15 ~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred CcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 379999873 1 2335899999864
No 111
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=24.04 E-value=21 Score=27.14 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=21.7
Q ss_pred CCCCCcCCCCCC--------CCCccCcCCCcccCCCC
Q psy8325 37 ELKCWKCLKNLS--------GKNLFCQYCSSVQKPDS 65 (237)
Q Consensus 37 ~~~Cw~C~~~~~--------~~~~fC~~C~~~qp~~~ 65 (237)
...|+.|+..+. ...+.|+.|+...++..
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS 40 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSC
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecCc
Confidence 358999998663 23589999999887653
No 112
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=22.65 E-value=13 Score=22.47 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=17.9
Q ss_pred CCCcCCCCC-------CCCCccCcCCCcccCCC
Q psy8325 39 KCWKCLKNL-------SGKNLFCQYCSSVQKPD 64 (237)
Q Consensus 39 ~Cw~C~~~~-------~~~~~fC~~C~~~qp~~ 64 (237)
.|+.|+.|= ....+-|..||+..|+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEEEC
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCccccc
Confidence 588998862 23345689999877653
No 113
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=22.46 E-value=2.9e+02 Score=21.77 Aligned_cols=23 Identities=0% Similarity=-0.058 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q psy8325 203 FNQAKDLLIRMKYFTTLVSKVRD 225 (237)
Q Consensus 203 ~~~A~~~l~rlkY~~~l~~~ik~ 225 (237)
...+...+.-.+++.+|-+.+.+
T Consensus 77 ~~~~~~~l~i~~~lERIgD~a~n 99 (217)
T 1xwm_A 77 LRRIVAAIKIASDIERIADFAVN 99 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666665554
No 114
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.66 E-value=52 Score=24.69 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=18.8
Q ss_pred cCCCCCCcCCCCCC---CCCccCcCCCc
Q psy8325 35 HTELKCWKCLKNLS---GKNLFCQYCSS 59 (237)
Q Consensus 35 ~~~~~Cw~C~~~~~---~~~~fC~~C~~ 59 (237)
..+..|-+||.... .....||.|++
T Consensus 65 v~p~~C~~CG~~F~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEINIPSRCPKCKS 92 (105)
T ss_dssp ECCCBBTTTCCBCCCCSSCCSSCSSSCC
T ss_pred EECcChhhCcCeecccCCCCCCCcCCCC
Confidence 44668999999752 45678999976
No 115
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=21.04 E-value=61 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=18.3
Q ss_pred CCCCCcCCCCC-CCCCccCcCCCc
Q psy8325 37 ELKCWKCLKNL-SGKNLFCQYCSS 59 (237)
Q Consensus 37 ~~~Cw~C~~~~-~~~~~fC~~C~~ 59 (237)
...|..|+... -.....|.+|+.
T Consensus 16 H~lCrRCG~~sfH~qK~~CgkCGY 39 (97)
T 2zkr_2 16 HTLCRRCGSKAYHLQKSTCGKCGY 39 (97)
T ss_dssp EECCTTTCSSCEETTSCCBTTTCT
T ss_pred CCcCCCCCCccCcCccccCcccCC
Confidence 34899999865 256789999998
No 116
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=20.56 E-value=1.9e+02 Score=19.55 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy8325 158 MEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVN 195 (237)
Q Consensus 158 meimE~rE~leea~~~~~l~~l~~~~~~~i~~~~~~l~ 195 (237)
-.+|++|++||+-.... ..+|..+++.+-+.|.
T Consensus 23 vk~me~rD~LEeqG~~~-----~~eI~~kV~~~RkkL~ 55 (61)
T 2e62_A 23 VALIEYRETLEEQGMKN-----PEEIERKVEINRKRLE 55 (61)
T ss_dssp HHHHHHHHHHHHHTCCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHH
Confidence 56899999999843111 1235555555555544
No 117
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=20.53 E-value=50 Score=26.96 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCCCcCCCCCC--CCCccCcCCCcccCCCCCCChhhhcCC
Q psy8325 38 LKCWKCLKNLS--GKNLFCQYCSSVQKPDSQSNYYDLFDL 75 (237)
Q Consensus 38 ~~Cw~C~~~~~--~~~~fC~~C~~~qp~~~~~nyf~llgl 75 (237)
..||.|+..+. ...+.|++|..+.... .-|..++..
T Consensus 3 ~~Cp~C~~~~~~~~~~~~C~~~~~~~~~~--~Gy~~~~~~ 40 (269)
T 1p91_A 3 FSCPLCHQPLSREKNSYICPQRHQFDMAK--EGYVNLLPV 40 (269)
T ss_dssp BBCTTTCCBCEEETTEEECTTCCEEEBCT--TSCEECSCS
T ss_pred ccCCCCCccceeCCCEEECCCCCcCCcCC--CEEEEeecc
Confidence 36999988762 3467899998765432 235555543
Done!