RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8325
(237 letters)
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 91.1 bits (227), Expect = 5e-23
Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 9/169 (5%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+Y+ LF L Y I+ L+ ++++LQ Q HPDKF+N ++ E+ ++ ++ +N AY L
Sbjct: 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTL 61
Query: 128 QNPLERGLYLLSLQNISIE-EDTKGTDQKLLMEILMLNEELDEASSEED----LEKLQTL 182
++PL+R YLLSL + E D LME + L EEL++ +D LE
Sbjct: 62 KHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQSKDPEAALESFIKR 121
Query: 183 IQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLE 231
++ + + + + ++ A D + ++K+ K+R + QLE
Sbjct: 122 VKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFL----DKLRSEVEQLE 166
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 76.4 bits (188), Expect = 2e-17
Identities = 49/169 (28%), Positives = 98/169 (57%), Gaps = 12/169 (7%)
Query: 69 YYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQ 128
++ LFDL+ ++ ++ L+ ++++L ++HPD+F++ + EQ ++ S+ LN+AY L+
Sbjct: 6 HFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLK 65
Query: 129 NPLERGLYLLSLQNISIEEDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQTL---IQA 185
+P R YLL+L + + D + L++ + L EEL+E E DL + T ++A
Sbjct: 66 SPPRRARYLLALSGHEVPLEVTVHDPEFLLQQMQLREELEELQDEADLAGVATFKRRLKA 125
Query: 186 TIDDLTKNVNASFE---QKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLE 231
D+L ++ A ++ +++ +A+ L+ RM++ L +VR QLE
Sbjct: 126 AQDELNESFAACWDDAARRE--EAERLMRRMQFLDKLAQEVR----QLE 168
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 74.7 bits (184), Expect = 9e-17
Identities = 30/120 (25%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 64 DSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKA 123
+ +++ LF L + ++ L ++ +Q+Q+HPD+F+ E+ ++ +++ N+A
Sbjct: 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62
Query: 124 YSILQNPLERGLYLLSLQNISI-EEDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQTL 182
Y L++PL+R YLL L+ + + E+ LM+ + E +++A + D++ L L
Sbjct: 63 YQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARAARDVDALDAL 122
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 73.4 bits (180), Expect = 2e-16
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 79 YLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLL 138
+ ++ L K+++QLQ+Q HPD ++ +EQ + S+ LN+AY L++PL R Y+L
Sbjct: 1 WQLDQSRLRKRYRQLQAQYHPD--ASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYML 58
Query: 139 SLQNISIEEDTKGT-DQKLLMEILMLNEELDE---ASSEEDLEKLQTLIQATIDDLTKNV 194
L NI + ++ D ME+L + +ELDE E LE L+ + I D+ +
Sbjct: 59 KLLNIDLTQEQTSERDTAFPMELLKVRDELDEIEQMDDEAGLELLEKQNKEMIQDIEAQL 118
Query: 195 NASFEQKDFNQAKDLLIRMKYFTTLVSKVRDK 226
+D+ A +++KY+ L S D
Sbjct: 119 GQCLNDQDWAAAVKYTVKLKYWYKLASAFEDW 150
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 67.4 bits (165), Expect = 5e-14
Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
Query: 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 126
S+ + LF L + I+ L ++++LQ HPD+F ++ EQ + S+ +N AY
Sbjct: 1 SDGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQT 60
Query: 127 LQNPLERGLYLLSLQNISIEEDTKGTDQKL--LMEILMLNEELDEASS----EEDLEKLQ 180
L++PL R YLL+L + + T + + L+E L EEL+EA E+ L+ L
Sbjct: 61 LKDPLLRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLG 120
Query: 181 TLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLELDK 234
I+A D + K ++ ++A +++++ L K+++ + E K
Sbjct: 121 VEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDIK 174
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 65.3 bits (159), Expect = 2e-13
Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 4/161 (2%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
NY+ L L Y I+ L K++ +Q + HPDK K +E+ + +S LN AYS L
Sbjct: 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKA--KTLQEKEQNLIIASELNNAYSTL 60
Query: 128 QNPLERGLYLLSLQNISI-EEDTKGTDQKLLMEILM-LNEELDEASSEEDLEKLQTLIQA 185
++ L+R Y+L LQNI++ +E T+ L + I E ++ DLEK++ +
Sbjct: 61 KDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTILFSDLEKIKNKYEL 120
Query: 186 TIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDK 226
+ ++ +FE+++ + A ++KY TL++K+++K
Sbjct: 121 MYKNEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKLQEK 161
>gnl|CDD|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain. This
domain is the HSCB C-terminal oligomerisation domain and
is found on co-chaperone proteins.
Length = 78
Score = 62.2 bits (152), Expect = 5e-13
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 153 DQKLLMEILMLNEELDEASSEEDLEKLQTL---IQATIDDLTKNVNASFEQKDFNQAKDL 209
D + LME + L E L+EA + +D E L L ++ I +L + + + ++KD+ +A DL
Sbjct: 3 DPEFLMEQMELREALEEARASDDEEALDELKKEVKQRIKELLEELEEALDEKDWEEAADL 62
Query: 210 LIRMKYFTTLVSKVRD 225
+ R+K+ L +++
Sbjct: 63 VRRLKFLEKLQEEIKQ 78
>gnl|CDD|179335 PRK01773, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 60.1 bits (146), Expect = 2e-11
Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 126
+N + LFDL + + ++N LS+++ LQ LHPD F+N + +EQ ++ S+ +N A I
Sbjct: 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQI 61
Query: 127 LQNPLERG-----LYLLSLQNISIEEDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQT 181
L++P+ R L QN+ E+ D LM+ + E+L+E ++D + L
Sbjct: 62 LKDPILRAEAIIALNTGEQQNL---EEKSTQDMAFLMQQMEWREQLEEIEQQQDEDALTA 118
Query: 182 L---IQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKV 223
I+ + ++ + + + QA + R+++ L+ ++
Sbjct: 119 FSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEI 163
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 46.0 bits (110), Expect = 3e-07
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YY++ + ++ ++ K +++L + HPDK E+ E +N+AY +L
Sbjct: 1 DYYEILGVPRD--ASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKE-----INEAYEVL 53
Query: 128 QNPLERGLYL 137
+P +R +Y
Sbjct: 54 SDPEKRAIYD 63
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 41.0 bits (97), Expect = 2e-05
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YYD+ L + ++ ++ K +++L + HPDK + + E+ E +N+AY +L
Sbjct: 1 DYYDI--LGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKE-----INEAYEVL 53
Query: 128 QN 129
+
Sbjct: 54 SD 55
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 38.8 bits (91), Expect = 1e-04
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YY++ L + + ++ K +++L + HPDK +E +E +N+AY +L
Sbjct: 2 DYYEI--LGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEE----AEEKFKEINEAYEVL 55
Query: 128 QNP 130
+P
Sbjct: 56 SDP 58
>gnl|CDD|235780 PRK06330, PRK06330, transcript cleavage factor/unknown domain
fusion protein; Validated.
Length = 718
Score = 41.3 bits (97), Expect = 3e-04
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 86 LSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISI 145
L K +SQL S ++ I Y+ ++ +S L+N R + LQ++ +
Sbjct: 275 LRPKGLSHESQLE-RSLSGSTDVDKKIQTIYT-FVRDLHSELKNEENRKSLIKKLQDLDL 332
Query: 146 EEDTKGTDQKLLMEI-LMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDF 203
EE + LL++ L+L+E L E SSE D E + +L + I+D+ N+ QK F
Sbjct: 333 EEL----NSALLLQRALLLSEFLGEKSSELDCENIASLSEDQIEDIVNNIEIVALQKSF 387
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 37.6 bits (87), Expect = 0.004
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQE-EQAISETYSSYLNKAYSILQNPLERGLY 136
++ K FK+L + HPD NK+ E+ E +N+AY++L +P +R +Y
Sbjct: 20 EIKKAFKKLARKYHPD--VNKSPGAEEKFKE-----INEAYTVLSDPEKRRIY 65
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 36.1 bits (84), Expect = 0.012
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 17/74 (22%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQA-----ISETYSSYLNK 122
+YY++ + + ++ K +++L + HPD+ N +E I+E
Sbjct: 5 DYYEILGVSKD--ASEEEIKKAYRKLAKKYHPDR--NPGDKEAEEKFKEINE-------- 52
Query: 123 AYSILQNPLERGLY 136
AY +L +P +R Y
Sbjct: 53 AYEVLSDPEKRAAY 66
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 35.9 bits (83), Expect = 0.012
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
++ K +++L + HPD + EQ E +N+AY IL +P +R Y
Sbjct: 21 EIKKAYRRLAKKYHPDLNPGDKEAEQKFKE-----INEAYEILSDPQKRAQY 67
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 36.1 bits (83), Expect = 0.012
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLS 139
D+ K+++ L + HPDK E ++ E + KAY +L + R YL
Sbjct: 114 DIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY 168
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 35.9 bits (83), Expect = 0.014
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 85 DLSKKFKQLQSQLHPDK-FSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
++ + +K+L + HPD+ N+ + EQ E + +AY +L +P +R +Y
Sbjct: 20 EIKRAYKRLVKEWHPDRHPENRKEAEQKFKE-----IQEAYEVLSDPQKRAMY 67
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 35.6 bits (82), Expect = 0.015
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YY+L + T + ++ +++L + HPD+ N+E+ A +E ++ +N+AY++L
Sbjct: 3 DYYELLGVSRT--ASADEIKSAYRKLALKYHPDR----NKEKGA-AEKFAQ-INEAYAVL 54
Query: 128 QNPLERGLY 136
+ +R Y
Sbjct: 55 SDAEKRAHY 63
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 35.1 bits (81), Expect = 0.022
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAY 124
+ +YY++ L L ++ ++ K F++L + HPDK + E+ E +N+AY
Sbjct: 2 ASKDYYEV--LGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKE-----INEAY 54
Query: 125 SILQNPLERGLY 136
+L +P ++ Y
Sbjct: 55 QVLSDPQKKAQY 66
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 34.5 bits (80), Expect = 0.036
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLERGLY 136
++ K +++L + HPD+ +K EE+ I+E AY +L +P +R Y
Sbjct: 16 EIKKAYRKLAKKYHPDRNKDKEAEEKFKEINE--------AYEVLSDPEKRAQY 61
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 33.6 bits (77), Expect = 0.075
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 66 QSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYS 125
+ +YY++ L +T + ++ K +++L + HPD+ + E+ E +AY
Sbjct: 3 KRDYYEI--LGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEA-----AEAYE 55
Query: 126 ILQNPLERGLY 136
+L +P +RG+Y
Sbjct: 56 VLSDPKKRGIY 66
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 33.7 bits (77), Expect = 0.075
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEE--QAISETYSSYLNKAYS 125
+YY++ L L+ + D+ K +++L + HPDK + EE + ISE AY+
Sbjct: 6 DYYEI--LGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISE--------AYA 55
Query: 126 ILQNPLERGLY 136
+L + +R Y
Sbjct: 56 VLSDAEKRAQY 66
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 33.4 bits (76), Expect = 0.086
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 85 DLSKKFKQLQSQLHPDKF-SNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
D+ K F++L + HPD NK + E+ E +++AY +L +P +R Y
Sbjct: 19 DIKKAFRELAKKWHPDLHPGNKAEAEEKFKE-----ISEAYEVLSDPQKRRQY 66
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 33.2 bits (76), Expect = 0.088
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YY++ L ++ + ++ K +++L + HPDK + + E+ E +N+AY +L
Sbjct: 4 DYYEV--LGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKE-----VNEAYEVL 56
Query: 128 QNPLERGLY 136
N +R Y
Sbjct: 57 SNDDKRRRY 65
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 33.1 bits (75), Expect = 0.11
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YY + + T + DL K + +L Q HPD K+ E++ +N AY +L
Sbjct: 4 DYYQILGVSKT--ASQADLKKAYLKLAKQYHPDTTDAKDAEKKF------KEINAAYDVL 55
Query: 128 QNPLERGLY 136
++ +R Y
Sbjct: 56 KDEQKRAAY 64
>gnl|CDD|215915 pfam00429, TLV_coat, ENV polyprotein (coat polyprotein).
Length = 560
Score = 32.8 bits (75), Expect = 0.15
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 90 FKQLQSQLHPDKFSNKNQE-EQAISETYSSYLNKAYSILQNPLERGLYLLSLQ 141
F LQ L D Q E +I++ S + A +LQN RGL LL L+
Sbjct: 425 FTSLQHALISDI-----QALESSINDLEDSLTSLAEVVLQN--RRGLDLLFLE 470
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 32.4 bits (74), Expect = 0.20
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQE-EQAISETYSSYLNKAYSILQNPLERGLY 136
++ K +++L + HPD NKN E E+ E +N+AY +L +P +R LY
Sbjct: 19 EIKKAYRRLARKYHPD--FNKNPEAEEKFKE-----INEAYQVLSDPEKRKLY 64
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 31.7 bits (72), Expect = 0.26
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YY++ + T ++ ++ K +++ Q HPDK + E+ E +AY +L
Sbjct: 6 DYYEVLGVSKTATVD--EIKKAYRKKAIQYHPDKNPGDKEAEEKFKEA-----AEAYDVL 58
Query: 128 QNPLERGLY 136
+P +R Y
Sbjct: 59 SDPDKRSRY 67
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 31.7 bits (72), Expect = 0.27
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YY + + T + ++ K +++L + HPDK + E+ E +++AY +L
Sbjct: 2 DYYTILGVSKT--ASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKE-----VSEAYEVL 54
Query: 128 QNPLERGLY 136
+ +R Y
Sbjct: 55 SDAQKRESY 63
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 31.7 bits (71), Expect = 0.28
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 126
+YY++ + ++ K +++L + HPD+ + +E +N+AY I
Sbjct: 6 LDYYEILGVPPNAS--LEEIKKAYRKLALKYHPDRNPGDPKV----AEEKFKEINEAYEI 59
Query: 127 LQNPLERGLYLLSLQNI 143
L +P R Y +
Sbjct: 60 LSDPERRAEYDKIGADN 76
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 30.9 bits (70), Expect = 0.59
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 85 DLSKKFKQLQSQLHPDKFS-NKNQEE--QAISETYSSYLNKAYSILQNPLERGLY 136
++ K +++L +LHPD + EE +A+SE A+ +L +P +R Y
Sbjct: 25 EIKKAYRKLARELHPDANPGDPAAEERFKAVSE--------AHDVLSDPAKRKEY 71
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 30.5 bits (69), Expect = 0.72
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAY 124
SQ +YY++ L ++ + ++ K +++L Q HPD+ + + EQ E +AY
Sbjct: 2 SQRDYYEV--LGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEA-----AEAY 54
Query: 125 SILQNPLERGLY 136
+L++ +R Y
Sbjct: 55 EVLRDAEKRARY 66
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 30.1 bits (69), Expect = 0.86
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 85 DLSKKFKQLQSQLHPDKFS-NKNQEEQ--AISETYSSYLNKAYSILQNPLERGLY 136
++ K +++L + HPD+ +K EE+ I E AY +L +P +R Y
Sbjct: 20 EIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKE--------AYEVLSDPQKRAAY 66
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 30.5 bits (69), Expect = 0.86
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 18 SRIANATLQNLCTDTVKHTELKCWKCLKNLSGKNLFCQYCSS 59
+ A T+ LC CW C+ + GKN F CS+
Sbjct: 25 AASAGITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACST 66
>gnl|CDD|205428 pfam13248, zf-ribbon_3, zinc-ribbon domain. This family consists
of a single zinc ribbon domain, ie half of a pair as in
family DZR. pfam12773.
Length = 26
Score = 26.9 bits (60), Expect = 1.1
Identities = 6/19 (31%), Positives = 6/19 (31%)
Query: 39 KCWKCLKNLSGKNLFCQYC 57
C C L FC C
Sbjct: 4 FCPNCGAELEPDAKFCPNC 22
>gnl|CDD|176688 cd07267, THT_Oxygenase_N, N-terminal domain of
2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily
contains the N-terminal, non-catalytic, domain of THT
oxygenase. THT oxygenase is an extradiol dioxygenase in
the 2,4-dinitrotoluene (DNT) degradation pathway. It
catalyzes the conversion of 2,4,5-trihydroxytoluene to
an unstable ring fission product,
2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The
native protein was determined to be a dimer by gel
filtration. The enzyme belongs to the type I family of
extradiol dioxygenases which contains two structurally
homologous barrel-shaped domains at the N- and
C-terminus of each monomer. The active-site metal is
located in the C-terminal barrel. Fe(II) is required for
its catalytic activity.
Length = 113
Score = 28.7 bits (65), Expect = 1.1
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 169 EASSEEDLEKLQTLIQAT-IDDLT 191
EA+S DLEK L A+ IDDL
Sbjct: 64 EAASRADLEKAAALPGASVIDDLE 87
>gnl|CDD|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner
mitochondrial membrane Mg2+ transporters Mfm1p and
Mrs2p-like family. A eukaryotic subfamily belonging to
the Escherichia coli CorA-Salmonella typhimurium
ZntB_like family (EcCorA_ZntB-like) family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This functionally diverse subfamily includes
the inner mitochondrial membrane Mg2+ transporters
Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human
MRS2/ MRS2L. It also includes a family of Arabidopsis
thaliana proteins (AtMGTs) some of which are localized
to distinct tissues, and not all of which can transport
Mg2+. Structures of the intracellular domain of two
EcCorA_ZntB-like family transporters: Vibrio
parahaemolyticus and Salmonella typhimurium ZntB form
funnel-shaped homopentamers, the tip of the funnel is
formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, as in some
ZntB family proteins, may be associated with the
transport of different divalent cations, such as zinc
and cadmium. The functional diversity of MIT
transporters may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 323
Score = 29.5 bits (67), Expect = 1.5
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 159 EILMLNEELDEASS--EEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYF 216
E L L+E S E +L++L+ +D+LT ++ S ++ + R+
Sbjct: 111 EFRALEAALEEVCSHLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKR----RLVEL 166
Query: 217 TTLVSKVRD 225
T V KVRD
Sbjct: 167 ETRVQKVRD 175
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 29.2 bits (66), Expect = 2.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
+L + +++L + HPD NK E + + +N+AY +L +P R Y
Sbjct: 19 ELKRAYRRLARKYHPD--VNK---EPGAEDRFKE-INRAYEVLSDPETRARY 64
>gnl|CDD|180630 PRK06582, PRK06582, coproporphyrinogen III oxidase; Provisional.
Length = 390
Score = 28.7 bits (64), Expect = 2.5
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 122 KAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKLLMEILMLNEELDEASSEEDLE-KLQ 180
A + P E+ L + +N+ I+ +TK T Q+++ EILM+ L + + LE KL
Sbjct: 286 SAIMMWHKP-EKWLDAVKTKNVGIQTNTKLTHQEIIEEILMMGLRLSKGINISTLEQKLN 344
Query: 181 TLIQATID 188
T ++ +D
Sbjct: 345 TKLENILD 352
>gnl|CDD|205420 pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family
consists of a single zinc ribbon domain, ie half of a
pair as in family DZR. pfam12773.
Length = 23
Score = 25.6 bits (57), Expect = 2.6
Identities = 6/19 (31%), Positives = 6/19 (31%)
Query: 39 KCWKCLKNLSGKNLFCQYC 57
C C L FC C
Sbjct: 1 FCPNCGAELPDGAKFCPNC 19
>gnl|CDD|224477 COG1561, COG1561, Uncharacterized stress-induced protein [Function
unknown].
Length = 290
Score = 28.8 bits (65), Expect = 2.6
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 157 LMEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYF 216
L ++L L L EEDLE L+ LI A +++ ++ E++ DLL R+
Sbjct: 107 LDDLLRLPGVLAIEEEEEDLEALEALILAALEEALDDLIEMREREGAALKADLLQRLDAI 166
Query: 217 TTLVSKVRDKKNQL 230
LV KV ++
Sbjct: 167 EELVEKVESLMPEI 180
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 29.0 bits (64), Expect = 2.7
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+YY++ L + + ++ K F++L + HPD+ + +E +N+A +L
Sbjct: 3 DYYEV--LGIDRDADEQEIKKAFRKLAKKYHPDR-NKAPDAASIFAE-----INEANDVL 54
Query: 128 QNPLERGLY 136
NP +R Y
Sbjct: 55 SNPKKRANY 63
>gnl|CDD|224176 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and
secretion].
Length = 552
Score = 28.5 bits (64), Expect = 3.1
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 106 NQEEQAISE-----TYSSYLNKAYSILQNPLERGL------YLLSLQNISIEEDTKGTDQ 154
NQ A S+ T +S L++ S+L P E L + SLQ ++ Q
Sbjct: 75 NQYRNANSQSSYLDTRASQLSQLESLLSEPSESSLSTLLNDFFNSLQELASNPSDTAARQ 134
Query: 155 KLLMEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMK 214
+L + L +++ + L L+ I A I VN+ +Q + ++K
Sbjct: 135 AVLSKAQTLVNQINNTYEQ--LTDLRKDINAEIAATVDEVNSLLKQ--IADLNKQIRKVK 190
Query: 215 YFTTLVSKVRDKKNQLE 231
+ + D+++QL
Sbjct: 191 AAGNDPNDLLDQRDQLV 207
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 28.2 bits (63), Expect = 4.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 174 EDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRD 225
+L+K Q L+ A D+ VNA + L ++ TL + +RD
Sbjct: 19 CELDKRQPLLVALAADI---VNAETSDGNDTDGNWGLEHQDWWQTLGALMRD 67
>gnl|CDD|221686 pfam12644, DUF3782, Protein of unknown function (DUF3782). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 91 and 186
amino acids in length.
Length = 61
Score = 25.6 bits (57), Expect = 5.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 154 QKLLMEILMLNEELDEASSEEDLEKLQTLIQATID 188
+KL EI L E+L E S+E + L I A
Sbjct: 4 KKLQKEIEKLEEKLRELLSKEQKKLLDEYIDALGA 38
>gnl|CDD|236302 PRK08578, PRK08578, preprotein translocase subunit SecF; Reviewed.
Length = 292
Score = 27.6 bits (62), Expect = 5.9
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 50 KNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEE 109
++ + S + Y F ++ D+ K ++ + D S N E
Sbjct: 67 ESALSGEPGVDVRKGSGNGYIITFGSG-----DDTDVDKLADAVKEFFNVDSISELNYSE 121
Query: 110 QAISETYSS 118
+ I T+ S
Sbjct: 122 KQIGPTFGS 130
>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular
trafficking and secretion].
Length = 1263
Score = 27.6 bits (61), Expect = 6.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 165 EELDEASSEE-DLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLV--- 220
E L++A S E DLE L ++ + L +++ A + ++ A +I + Y+ V
Sbjct: 798 EHLNKAKSREVDLESLNNHLKNAVQ-LNESLVAKYNEEGLRYAVTTMISLNYYPKAVNFL 856
Query: 221 ---SKVRDKKNQ 229
+ DK NQ
Sbjct: 857 LEYAVEIDKGNQ 868
>gnl|CDD|236645 PRK10060, PRK10060, RNase II stability modulator; Provisional.
Length = 663
Score = 27.3 bits (61), Expect = 8.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 70 YDLFDLKLTY--LINN----VDLSKKFKQLQSQLHPDKF 102
Y D++LT LI N + + ++F QL +Q+H D F
Sbjct: 524 YCPIDVELTESCLIENEELALSVIQQFSQLGAQVHLDDF 562
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 27.0 bits (61), Expect = 8.7
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 178 KLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIR 212
+L+ ++ +++L K + A+FE +++ K+ +
Sbjct: 88 ELKKDMEELVEELKKEIPAAFESEEYEARKEEIEE 122
>gnl|CDD|233894 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK. The
flagellar hook-associated protein FlgK of bacterial
flagella has conserved N- and C-terminal domains. The
central region is highly variable in length and
sequence, and often contains substantial runs of
low-complexity sequence. This model is built from an
alignment of FlgK sequences with the central region
excised. Note that several other proteins of the
flagellar apparatus also are homologous in the N- and
C-terminal regions to FlgK, but are excluded from this
model [Cellular processes, Chemotaxis and motility].
Length = 324
Score = 26.9 bits (60), Expect = 8.8
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 109 EQAISETYSSYLNKAYSILQNPLERGL------YLLSLQNISIEEDTKGTDQKLLMEILM 162
+++ +S L+K I + GL + +LQ ++ D++ Q +L
Sbjct: 79 SAGYADSRASGLSKIEQIFNDLDGSGLSTYLNNFFNALQELAKNPDSEALRQAVLESAQA 138
Query: 163 LNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQ 200
L + ++ SSE L+ L+ I A I +N+ +Q
Sbjct: 139 LANQFNQTSSE--LQDLRKNINAEIKSAVTEINSLLKQ 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.354
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,100,595
Number of extensions: 1004933
Number of successful extensions: 1109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 122
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.7 bits)