RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8325
(237 letters)
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 158 bits (401), Expect = 8e-49
Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 4/196 (2%)
Query: 39 KCWKC---LKNLSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQS 95
+CW C FC C ++Q PD +Y+ L D ++ ++ L +++QLQ
Sbjct: 12 RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQR 71
Query: 96 QLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGT-DQ 154
+HPD FS ++Q E+ SE +S+ +N AY L PL RGLYLL L I I E T D+
Sbjct: 72 LVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDR 131
Query: 155 KLLMEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMK 214
+ L+EI+ +NE+L EA SE +++++++++A + T NV+++FEQ DF +AK++L +M+
Sbjct: 132 QFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMR 191
Query: 215 YFTTLVSKVRDKKNQL 230
YF+ + K++ KK L
Sbjct: 192 YFSNIEEKIKLKKIPL 207
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 135 bits (340), Expect = 4e-40
Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 5/171 (2%)
Query: 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAY 124
+ NY++LF L + + ++ LS +F+ LQ + HPD F+ ++ ++ ++ ++ +N AY
Sbjct: 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAY 61
Query: 125 SILQNPLERGLYLLSLQNISIE-EDTKGTDQKLLMEILMLNEELDEASSEED----LEKL 179
L++PL R YLLSLQ I + E D LME + L EEL+ ++ D L
Sbjct: 62 QTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTACADPEAALVAF 121
Query: 180 QTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQL 230
T + A + Q ++ A D + ++K+ L ++V ++QL
Sbjct: 122 DTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQL 172
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 130 bits (329), Expect = 1e-38
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 4/168 (2%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+Y+ LF L Y ++ LS +F+ LQ Q HPDKF++ +Q EQ + S+ +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 128 QNPLERGLYLLSLQNISIE-EDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQTL---I 183
++PL R YLLSL + E D LME L L EELDE +D +L++ +
Sbjct: 62 RHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRV 121
Query: 184 QATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLE 231
+ D + + + + ++ A D ++++ L S + +L
Sbjct: 122 KKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEKLL 169
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 122 bits (306), Expect = 5e-35
Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 20/180 (11%)
Query: 57 CSSVQKPDSQSNYYDLFDLKL-----TYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQA 111
+ VQ+ + +Y+LF + I+ L K+++QLQ+Q HPD +++
Sbjct: 2 NALVQRRFTS-TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--- 57
Query: 112 ISETYSSYLNKAYSILQNPLERGLYLLSLQ---NISIEEDTKGT---DQKLLMEILMLNE 165
SS LN+AY L++PL R Y+L L +++ E+ + D +LL+++L +++
Sbjct: 58 -----SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHD 112
Query: 166 ELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRD 225
EL + E ++ L+ + I D+ + + KD+ A L + +KY+ L +D
Sbjct: 113 ELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKD 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 7e-08
Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 47/209 (22%)
Query: 60 VQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPD------KFSNKNQEEQAIS 113
+ D+ S LF L+ V +KF ++ L + + ++ ++
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMV---QKF--VEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 114 ETYSSYLNKAYSILQ-------------NPLERGLY-LLSLQNISIEEDTKGTDQKLLME 159
Y ++ Y+ Q L + L L +N+ I+ G+ + +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LGSGKTWVAL 168
Query: 160 ILMLNEELDEA--------------SSEEDLEKLQTLIQATIDDLTKNVNASFEQK-DFN 204
+ L+ ++ S E LE LQ L+ + T + S K +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 205 QAKD----LLIRMKYFTTLV--SKVRDKK 227
+ LL Y L+ V++ K
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Score = 39.5 bits (91), Expect = 7e-04
Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 38/184 (20%)
Query: 51 NLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLH---------PDK 101
N +Y S V+K + + + + YL +L K + LH P
Sbjct: 409 NKLHKY-SLVEK-QPKESTISIPSI---YL----ELKVKLENEY-ALHRSIVDHYNIPKT 458
Query: 102 FSNKNQEEQAISETYSSY----LNKAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKLL 157
F + + + + + S+ L + L R ++L D + +QK+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----------DFRFLEQKIR 508
Query: 158 MEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDF-NQAKDLLIRMKYF 216
+ N ++ + L+ + I + VNA DF + ++ LI KY
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA---ILDFLPKIEENLICSKY- 564
Query: 217 TTLV 220
T L+
Sbjct: 565 TDLL 568
Score = 36.0 bits (82), Expect = 0.009
Identities = 44/328 (13%), Positives = 91/328 (27%), Gaps = 116/328 (35%)
Query: 15 SLFSRIANATLQNLCTDTV-----------KHTELKCWKCLKNL-------------SGK 50
S+ +R+ L D + +L+ + L L SGK
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELRPAKNVLIDGVLGSGK 163
Query: 51 N-LFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEE 109
+ C S K + ++ +F L L + + + ++L Q+ P+ S +
Sbjct: 164 TWVALDVCLS-YKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 110 QAISETYSSYLNKAYSILQNPLERGLYLL------------------------------- 138
+S + P E L +L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 139 ---SLQNISIEEDTKGTDQKLLMEILM--LNEELDEASSEE------------------- 174
+ +IS++ + + +L+ L+ + E
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 175 ---------DLEKLQTLIQATIDDLTKNVNASFEQKD-------FNQAKDLLIRMKYFTT 218
+ +KL T+I+++++ L E + F I +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPA-----EYRKMFDRLSVFP--PSAHIPTILLSL 394
Query: 219 L-----VSKVRDKKNQLE----LDKHSK 237
+ S V N+L ++K K
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Score = 31.7 bits (71), Expect = 0.24
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 57 CSSVQKPDSQSNYYDLFDLKL--TYLINN-------VDLSKKF-KQLQSQLHPDKFSNKN 106
++ S N L LK Y+ +N V+ F +++ L K+++
Sbjct: 511 STAWNASGSILN--TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 107 QEEQAISETYSSYLNKAYSILQ 128
+ A+ + +A+ +Q
Sbjct: 569 R--IALMAEDEAIFEEAHKQVQ 588
Score = 27.9 bits (61), Expect = 3.3
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 164 NEELDEASSEEDLEK---LQTLIQATIDDL--------TKNVNASFEQKDFNQAKDLLIR 212
+ +D + E + L A +D+ K++ + E +KD +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 213 MKY-FTTLVSK 222
F TL+SK
Sbjct: 64 TLRLFWTLLSK 74
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 40.6 bits (95), Expect = 6e-05
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
DL L+ + N + K + + + HPD K +E+ + + +N Y +
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD----KGGDEEKMKK-----MNTLYKKM 59
Query: 128 QNPLERGLY 136
++ ++
Sbjct: 60 EDGVKYAHQ 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 8e-05
Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 71/215 (33%)
Query: 1 MLRVRGIVQNLTVNSLFSRIA--NATLQNLCTDTVKHTELKCWKCLKN------LSG--K 50
ML + LT + + N+ L K E+ L N +SG +
Sbjct: 338 MLSISN----LTQEQVQDYVNKTNSHL-----PAGKQVEIS----LVNGAKNLVVSGPPQ 384
Query: 51 NLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSK-KFKQLQSQLHPDKFSNKNQEE 109
+L +++K + S +D S+ F S+ KFSN
Sbjct: 385 SL-YGLNLTLRKAKAPS---------------GLDQSRIPF----SERKL-KFSN----- 418
Query: 110 Q--AISETY-SSYLNKAYSILQNPLERGLYLLSLQNISIE-EDTK-GTDQKLLMEILMLN 164
+ ++ + S L A ++ L + + ++I I DT G+D ++L
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL------- 471
Query: 165 EELDEASSEEDLEKL-QTLIQATID-DLTKNVNAS 197
S E++ +I+ + + T A+
Sbjct: 472 -------SGSISERIVDCIIRLPVKWETTTQFKAT 499
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 40.7 bits (95), Expect = 9e-05
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
DL L+ + N + K + + + HPD K +E+ + + +N Y +
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD----KGGDEEKMKK-----MNTLYKKM 62
Query: 128 QNPLERGLY 136
++ ++
Sbjct: 63 EDGVKYAHQ 71
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 40.6 bits (94), Expect = 1e-04
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 77 LTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
+ L+ + K +++ +HPDK + + E+ A + LN A+S +N ++ LY
Sbjct: 125 MADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYA--KMIFMELNDAWSEFENQGQKPLY 182
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 34.6 bits (79), Expect = 0.006
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 75 LKLTYLINNVDLSKKFKQLQSQLHPDKFSNKN--QEEQAISETYSSYLNKAYSILQN 129
+ L +I + K +++ LHPDK K ++ ++E L +A+
Sbjct: 46 VPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 33.9 bits (78), Expect = 0.010
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
L+K ++ L + HPD+ KN+EE+ ++E + AY L++ + Y
Sbjct: 32 KLAKAYRALARKHHPDR--VKNKEEKLLAEERFRVIATAYETLKDDEAKTNY 81
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 33.0 bits (75), Expect = 0.011
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 69 YYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQ 128
+L L + + + +KQ LHPDK + ++ LN + +
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQE---------LNSLWGTFK 63
Query: 129 NPLERGLY 136
+
Sbjct: 64 TEVYNLRM 71
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 32.7 bits (75), Expect = 0.022
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLERGLY 136
+ K F +L + HPDK + + E + I+E AY L + R Y
Sbjct: 23 QIKKAFHKLAMKYHPDKNKSPDAEAKFREIAE--------AYETLSDANRRKEY 68
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 32.4 bits (74), Expect = 0.022
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 60 VQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEE--QAISETYS 117
+++ + + +D+ +K + +++K +++L LHPDK E+ +A+
Sbjct: 20 IRRIRNSKDSWDMLGVKPG--ASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVN--- 74
Query: 118 SYLNKAYSILQNPLERG 134
A + L ++ G
Sbjct: 75 -----ARTALLKNIKSG 86
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 32.3 bits (73), Expect = 0.025
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 77 LTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQN 129
+ L+ + K +++ +HP K + + E+ A + LN A+S +N
Sbjct: 41 MADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYA--KMIFMELNDAWSEFEN 91
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 32.3 bits (74), Expect = 0.027
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQ--AISETYSSYLNK 122
++ YDL L ++ N +L K +++ + HPDK E+ ISE
Sbjct: 6 KETKLYDL--LGVSPSANEQELKKGYRKAALKYHPDK--PTGDTEKFKEISE-------- 53
Query: 123 AYSILQNPLERGLY 136
A+ IL +P +R +Y
Sbjct: 54 AFEILNDPQKREIY 67
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 32.8 bits (75), Expect = 0.027
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 62 KPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLN 121
+ + +YY L L L + + +FK + HPDK + + + L
Sbjct: 15 RSEDTEDYYTL--LGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQK-----LQ 67
Query: 122 KAYSILQNPLERGLY 136
KA IL N R Y
Sbjct: 68 KAKEILTNEESRARY 82
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 33.7 bits (77), Expect = 0.033
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
++ + FK+L +LHPDK N + +N+AY +L++ R Y
Sbjct: 18 EIRQAFKKLALKLHPDKNPNNPNAHGDFLK-----INRAYEVLKDEDLRKKY 64
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 32.2 bits (74), Expect = 0.038
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAY 124
++ +YY++ L ++ ++ K +K+L + HPD+ + E E + +AY
Sbjct: 1 AKQDYYEI--LGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKE-----IKEAY 53
Query: 125 SILQNPLERGLY 136
+L + +R Y
Sbjct: 54 EVLTDSQKRAAY 65
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 30.6 bits (70), Expect = 0.082
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLERGLY 136
++ + +++ + HPDK EE+ I+E AY +L +P +R ++
Sbjct: 19 EIKRAYRRQALRYHPDKNKEPGAEEKFKEIAE--------AYDVLSDPRKREIF 64
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 30.3 bits (69), Expect = 0.092
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 65 SQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEE--QAISETYSSYLNK 122
++ YYD+ L + ++ +L K ++++ + HPDK N + E + IS+
Sbjct: 6 KETGYYDV--LGVKPDASDNELKKAYRKMALKFHPDK--NPDGAEQFKQISQ-------- 53
Query: 123 AYSILQNPLERGLY 136
AY +L + +R +Y
Sbjct: 54 AYEVLSDEKKRQIY 67
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 32.8 bits (74), Expect = 0.097
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 47 LSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKN 106
+ + + S + N+Y L L ++ ++ ++ + FK+L +LHPDK N
Sbjct: 1 MGSSHHHHHHSSGHIEGRHDQNFYSL--LGVSKTASSREIRQAFKKLALKLHPDKNPNNP 58
Query: 107 QEEQAISETYSSYLNKAYSILQNPLERGLY 136
+ +N+AY +L++ R Y
Sbjct: 59 NAHGDFLK-----INRAYEVLKDEDLRKKY 83
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 31.7 bits (72), Expect = 0.10
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 85 DLSKKFKQLQSQLHPDK-FSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
DL +K+++L HPDK ++ +++A+ IL N + Y
Sbjct: 26 DLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREY 78
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 30.5 bits (69), Expect = 0.12
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 57 CSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETY 116
S S++ YDL L + + + + HPD+ S + + +
Sbjct: 7 GSQGDCSYSRTALYDL--LGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTR-- 62
Query: 117 SSYLNKAYSILQNPLERGLY 136
+++AY +L + R Y
Sbjct: 63 ---ISQAYVVLGSATLRRKY 79
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.14
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 165 EELDEASSEEDLEKLQTLIQATIDDLTKNVNASFE-QKDFNQAKD 208
+ELD AS + ++ + + +++ + + E K N+ D
Sbjct: 99 QELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Score = 27.4 bits (60), Expect = 3.4
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQAISE 114
DL + ++ Q+ +K +N+ ++ +
Sbjct: 119 DLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 29.9 bits (68), Expect = 0.15
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLERGLY 136
DL K +++L + HPDK E AI AY++L NP +R Y
Sbjct: 23 DLKKAYRRLALKFHPDKNHAPGATEAFKAIGT--------AYAVLSNPEKRKQY 68
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 30.0 bits (68), Expect = 0.18
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLERGLY 136
D+ K +K+L + HPDK + E++ IS+ AY IL N +R Y
Sbjct: 33 DIKKAYKKLAREWHPDKNKDPGAEDRFIQISK--------AYEILSNEEKRTNY 78
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 29.5 bits (67), Expect = 0.18
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
++ K + QL + HPD + + ++ S+ L +AY +L + ++R Y
Sbjct: 23 EIKKAYYQLAKKYHPDTNKDDPKAKEKFSQ-----LAEAYEVLSDEVKRKQY 69
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 30.1 bits (68), Expect = 0.23
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 85 DLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
D+ K +++L + HPDK + + E +N A++IL + +R +Y
Sbjct: 33 DIKKSYRKLALKYHPDKNPDNPEAADKFKE-----INNAHAILTDATKRNIY 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.26
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 173 EEDLEKLQTLIQATIDD----LTKNVNASFE 199
++ L+KLQ ++ DD L + A+ E
Sbjct: 19 KQALKKLQASLKLYADDSAPALA--IKATME 47
Score = 30.3 bits (67), Expect = 0.27
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 108 EEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIE 146
E+QA+ + +S L K Y+ P L++ ++E
Sbjct: 18 EKQALKKLQAS-L-KLYADDSAP------ALAI-KATME 47
Score = 28.0 bits (61), Expect = 1.6
Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 3/16 (18%)
Query: 88 KKFKQLQSQLH---PD 100
+ K+LQ+ L D
Sbjct: 20 QALKKLQASLKLYADD 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 31.2 bits (71), Expect = 0.26
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 61 QKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYL 120
K + +YY L + ++ K +++L Q HPD F +N+EE+ +E +
Sbjct: 376 LKQSQKRDYY--KILGVKRNAKKQEIIKAYRKLALQWHPDNF--QNEEEKKKAEKKFIDI 431
Query: 121 NKAYSILQNPLERGLY 136
A +L +P R +
Sbjct: 432 AAAKEVLSDPEMRKKF 447
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 29.3 bits (66), Expect = 0.28
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 85 DLSKKFKQLQSQLHPDKFS-NKNQEEQAISETYSSYLNKAYSILQNPLERGLY 136
DL +K+++L HPDK S + +++A+ IL N + Y
Sbjct: 32 DLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKY 84
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 28.9 bits (65), Expect = 0.40
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 58 SSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYS 117
V + + ++ + + + K ++L + HPDK N E I+
Sbjct: 7 HLVPRGSILKEVTSV--VEQAWKLPESERKKIIRRLYLKWHPDK----NPENHDIANEVF 60
Query: 118 SYLNKAYSILQNPLERGLY 136
+L + L+ ++
Sbjct: 61 KHLQNEINRLE---KQAFL 76
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 0.41
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 18/159 (11%)
Query: 83 NVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQN 142
++ L K QLQ ++ K+ E+ + L YS L + L +
Sbjct: 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNN------LEITYSTETEKLRSDVERLRMS- 975
Query: 143 ISIEEDTKGTDQKLLM---EILMLNEELDEASSE-----EDLEKLQTLIQATIDDLTKNV 194
EE+ K ++L EI L +EL + +E E +K + + + +L +
Sbjct: 976 ---EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 195 NASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLELD 233
+K+ + + T+ K+ ++ QLELD
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 26.0 bits (57), Expect = 3.2
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 35 HTE-LKCWKCLKNLSGK-------NLFCQYCSSVQKPDS 65
H+E C KC +L GK +FCQ C S D
Sbjct: 32 HSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI 70
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 26.2 bits (57), Expect = 9.3
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 106 NQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKLLMEILMLNE 165
+EE+ I Y L+ + L+ +L NI +L+L+
Sbjct: 172 REEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNI---------------PVLVLDV 216
Query: 166 ELDEASSEEDLEKLQTLIQATIDDL 190
D + E L + + +L
Sbjct: 217 NDDFSEEVTKQEDLMREVNTFVKNL 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 26.2 bits (58), Expect = 9.9
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 163 LNEELDEASSEEDLEKLQTLIQATIDDLTKN 193
++ E+++ + + + L + Q I+ L +
Sbjct: 1 MSNEVEQKKNIKTINDLPGISQTVINKLIEA 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.354
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,137,407
Number of extensions: 170549
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 82
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)