RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8325
(237 letters)
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal
oligomerisation domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 59.0 bits (143), Expect = 2e-12
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 147 EDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQTL---IQATIDDLTKNVNASFEQKDF 203
E D LME L L EELDE +D +L++ ++ D + + + + +
Sbjct: 6 EQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW 65
Query: 204 NQAKDLLIRMKYFTTLVSKVRDKKNQLE 231
+ A D ++++ L S + +L
Sbjct: 66 DAAADTCRKLRFLDKLRSSAEQLEEKLL 93
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 57.0 bits (137), Expect = 9e-12
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+Y+ LF L Y ++ LS +F+ LQ Q HPDKF++ +Q EQ + S+ +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 128 QNPLERGLYLLSLQ 141
++PL R YLLSL
Sbjct: 62 RHPLMRAEYLLSLH 75
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 36.5 bits (84), Expect = 3e-04
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 63 PDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNK 122
++ + + + L+ + K +++ +HPDK Q + ++ LN
Sbjct: 30 WAGETKWKPV---GMADLVTPEQVKKVYRKAVLVVHPDK--ATGQPYEQYAKMIFMELND 84
Query: 123 AYSILQNPLERGLY 136
A+S +N ++ LY
Sbjct: 85 AWSEFENQGQKPLY 98
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 32.7 bits (74), Expect = 0.007
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDK-FSNKNQEEQAISETYSSYLNKAYSI 126
++Y + L N DL +K+++L HPDK ++ +++A+ I
Sbjct: 17 DWYSI--LGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 127 LQNPLERGLY 136
L N + Y
Sbjct: 75 LGNEETKKKY 84
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 28.4 bits (63), Expect = 0.17
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 68 NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
+L L + + + +KQ LHPDK + LN +
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA---------LMQELNSLWGTF 62
Query: 128 QNPLERGLY 136
+ +
Sbjct: 63 KTEVYNLRM 71
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of
calcium/calmodulin-dependent protein kinase type II
alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId:
9606]}
Length = 135
Score = 26.9 bits (58), Expect = 1.6
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 146 EEDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQTLI 183
+ED K Q EI+ + E+L EA + D E +
Sbjct: 3 DEDLKVRKQ----EIIKITEQLIEAINNGDFEAYTKIC 36
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 27.2 bits (60), Expect = 1.8
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 65 SQSNYYDLFDLKLTYL-INNVDLSKKFKQLQSQLHPDK 101
S NY D K +Y+ + DL +F Q + HP+
Sbjct: 272 SAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNV 309
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.3 bits (59), Expect = 1.9
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 87 SKKFKQLQSQLHPDK----FSNKNQEEQAISETYSS--YLNKAYSILQNPLERGLYLLSL 140
K + L + F N + E + ET++S Y ++ SI+ +P
Sbjct: 277 HKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPS--------- 327
Query: 141 QNISIEEDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQ 180
+N+S +E +L + E+ +E+LE++Q
Sbjct: 328 KNVSSKEV-----ARLKKLVSYWKEQAGRKGDDEELEEIQ 362
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans,
different strains [TaxId: 876]}
Length = 118
Score = 26.0 bits (56), Expect = 2.3
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 34 KHTELKCWKCLKNLSGK-----NLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSK 88
KH ++C +C L C + ++N D+ ++ + +D K
Sbjct: 38 KHATVECVQCHHTLEADGGAVKKCTTSGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHK 97
Query: 89 KFKQLQSQLHP 99
K+ + P
Sbjct: 98 ALKKDKKPTGP 108
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga
maritima [TaxId: 2336]}
Length = 78
Score = 24.5 bits (53), Expect = 4.0
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 158 MEILMLNEELDEASSEEDLEKLQTLI---QATIDDLTKNVNASFEQKDFNQAKDLLIRMK 214
M I + ++DEA +ED E L +L+ + ++ L K+ + +KD + + + R
Sbjct: 1 MNIDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKT 60
Query: 215 YFTTLVSKVRDKKNQLE 231
++ +R+ ++ L+
Sbjct: 61 ALFQEINVIREARSSLQ 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.354
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 768,846
Number of extensions: 34088
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 25
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.7 bits)