BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy833
(642 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 80/220 (36%), Gaps = 47/220 (21%)
Query: 118 FCRVPTP---GAEYGNFL-DTRYQSSFFFGCQD------TFKLAGQTDKNDNVVRC---- 163
FC P P G GN L + Y S + C F L G++ +RC
Sbjct: 255 FCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGES-----TLRCTVDS 309
Query: 164 QANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGC 223
Q G W RCE + V + Q+ G Y + F C
Sbjct: 310 QKTGTWSGPAPRCE----------LSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFAC 359
Query: 224 QDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDD 283
F L G +RC A G W+ CE C P ++G + VR+D
Sbjct: 360 MFGFTLKGSKQ-----IRCNAQGTWEPSAPVCEKE-CQAPPNILNGQK--EDRHMVRFDP 411
Query: 284 EQGSEVQFGCNKPGYILINPRPITCVRE-------PECKI 316
G+ +++ CN PGY+L+ I C E P+CK+
Sbjct: 412 --GTSIKYSCN-PGYVLVGEESIQCTSEGVWTPPVPQCKV 448
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 32/175 (18%)
Query: 137 QSSFFFGCQDTFK-LAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVAT 195
++ +F+ TFK +G T K + +RC+A+ WD CE C + + +
Sbjct: 597 EAPYFYNDTVTFKCYSGFTLKGSSQIRCKADNTWDPEIPVCEKETCQHVRQSLQELPAGS 656
Query: 196 SYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQ--ANGIWDFGDL 253
E V CQD ++L G + CQ NGIW
Sbjct: 657 RVELVNTS-------------------CQDGYQLTGHAYQ-----MCQDAENGIWFKKIP 692
Query: 254 RCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITC 308
C+ C P V+G E Y G+EV + C++ G+ L+ + + C
Sbjct: 693 LCKVIHCHPPPVIVNGKHTGMMAENFLY----GNEVSYECDQ-GFYLLGEKKLQC 742
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 24/130 (18%)
Query: 136 YQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVAT 195
Y + F C F L G +RC A G W+ CE C P ++G +
Sbjct: 351 YNDTVIFACMFGFTLKGSKQ-----IRCNAQGTWEPSAPVCEKE-CQAPPNILNGQK--E 402
Query: 196 SYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRC 255
VR+D +S + C + L G+ ++C + G+W +C
Sbjct: 403 DRHMVRFDP-----------GTSIKYSCNPGYVLVGEES-----IQCTSEGVWTPPVPQC 446
Query: 256 EGPVCSDPGR 265
+ C GR
Sbjct: 447 KVAACEATGR 456
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
Receptor 1
Length = 1931
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 132 LDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGY 191
L+ + + F C + F+L G++ + V +W+ CE C +P ++G
Sbjct: 1686 LNLQLGAKVSFVCDEGFRLKGRSASH--CVLAGMKALWNSSVPVCEQIFCPNPPAILNGR 1743
Query: 192 QVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRC----QANGI 247
T + + Y E DT TF L G++ +RC Q NG+
Sbjct: 1744 HTGTPFGDIPYGKE-ISYACDTHPDRGM------TFNLIGESS-----IRCTSDPQGNGV 1791
Query: 248 WDFGDLRCEGPV---CSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPR 304
W RCE V C P + +G+ + G + + C+ PGY+L+
Sbjct: 1792 WSSPAPRCELSVPAACPHPPKIQNGHYIGGHVSLYL----PGMTISYICD-PGYLLVGKG 1846
Query: 305 PITCVRE 311
I C +
Sbjct: 1847 FIFCTDQ 1853
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 27/137 (19%)
Query: 161 VRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFF 220
+ C N +W RC C +P PV+G Q + S
Sbjct: 43 IICLKNSVWTGAKDRCRRKSCRNPPDPVNGMVHVIKGIQ---------------FGSQIK 87
Query: 221 FGCQDTFKLAGQTDKNDNVVRCQANG---IWDFGDLRCEGPVCSDPGRPVDGYQVATSYE 277
+ C ++L G + C +G IWD C+ C P +G ++T+ E
Sbjct: 88 YSCTKGYRLIGSSSAT-----CIISGDTVIWDNETPICDRIPCGLPPTITNGDFISTNRE 142
Query: 278 QVRYDDEQGSEVQFGCN 294
Y GS V + CN
Sbjct: 143 NFHY----GSVVTYRCN 155
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 28/117 (23%)
Query: 142 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV--CSDPGRPVDGYQVATSYEQ 199
F C D + L G ++ CQ NG W C+ CS+PG P+ +V + Y
Sbjct: 114 FHCYDGYTLRGSANRT-----CQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQY-- 166
Query: 200 VRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCE 256
R + S + C L G + CQ G W + C+
Sbjct: 167 --------------RLEDSVTYHCSRGLTLRGSQRRT-----CQEGGSWSGTEPSCQ 204
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 221 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV--CSDPGRPVDGYQVATSYEQ 278
F C D + L G ++ CQ NG W C+ CS+PG P+ +V + Y
Sbjct: 114 FHCYDGYTLRGSANRT-----CQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQY-- 166
Query: 279 VRYDDEQGSEVQFGCNKPGYILINPRPITCVR-------EPECK 315
R +D V + C++ G L + TC EP C+
Sbjct: 167 -RLED----SVTYHCSR-GLTLRGSQRRTCQEGGSWSGTEPSCQ 204
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 28/117 (23%)
Query: 142 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV--CSDPGRPVDGYQVATSYEQ 199
F C D + L G ++ CQ NG W C+ CS+PG P+ +V + Y
Sbjct: 104 FHCYDGYTLRGSANRT-----CQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQY-- 156
Query: 200 VRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCE 256
R + S + C L G + CQ G W + C+
Sbjct: 157 --------------RLEDSVTYHCSRGLTLRGSQRRT-----CQEGGSWSGTEPSCQ 194
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 221 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV--CSDPGRPVDGYQVATSYEQ 278
F C D + L G ++ CQ NG W C+ CS+PG P+ +V + Y
Sbjct: 104 FHCYDGYTLRGSANRT-----CQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQY-- 156
Query: 279 VRYDDEQGSEVQFGCNKPGYILINPRPITCVR-------EPECK 315
R +D V + C++ G L + TC EP C+
Sbjct: 157 -RLED----SVTYHCSR-GLTLRGSQRRTCQEGGSWSGTEPSCQ 194
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 28/117 (23%)
Query: 142 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV--CSDPGRPVDGYQVATSYEQ 199
F C D + L G ++ CQ NG W C+ CS+PG P+ +V + Y
Sbjct: 95 FHCYDGYTLRGSANRT-----CQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQY-- 147
Query: 200 VRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCE 256
R + S + C L G + CQ G W + C+
Sbjct: 148 --------------RLEDSVTYHCSRGLTLRGSQRRT-----CQEGGSWSGTEPSCQ 185
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 221 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV--CSDPGRPVDGYQVATSYEQ 278
F C D + L G ++ CQ NG W C+ CS+PG P+ +V + Y
Sbjct: 95 FHCYDGYTLRGSANRT-----CQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQY-- 147
Query: 279 VRYDDEQGSEVQFGCNKPGYILINPRPITCVR-------EPECK 315
R +D V + C++ G L + TC EP C+
Sbjct: 148 -RLED----SVTYHCSR-GLTLRGSQRRTCQEGGSWSGTEPSCQ 185
>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 579
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 23/180 (12%)
Query: 298 YILINPRPITCVREPECKIIKPLGLASGRIPDSSINATSESPYLVRVNACSVPLIPGPRV 357
Y L++ P+ +C + PLG+ SGRI + I+A+S P+
Sbjct: 242 YYLVHQEPLENF---QCNV--PLGMESGRIANEQISASSTYSDGRWT----------PQQ 286
Query: 358 QELLAEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRPTEIRFFYK------QA 411
L + N N+ ++V + R ++ + T + R T+ ++ K
Sbjct: 287 SRLHGDDNGWTPNLDSNKEYLQVDL-RFLTMLTAIATQGAISRETQNGYYVKSYKLEVST 345
Query: 412 ESENFVVYFPNFNLTMRDPGNYG-ELAMITLPKFVQARFVILGIVSYMDNACLKFELMGC 470
E+++VY N + N E+ + L + RFV + ++ L+ EL GC
Sbjct: 346 NGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLELFGC 405
>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
pdb|2QQO|B Chain B, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
Length = 460
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 23/180 (12%)
Query: 298 YILINPRPITCVREPECKIIKPLGLASGRIPDSSINATSESPYLVRVNACSVPLIPGPRV 357
Y L++ P+ +C + PLG+ SGRI + I+A+S P+
Sbjct: 123 YYLVHQEPLENF---QCNV--PLGMESGRIANEQISASSTYSDGRWT----------PQQ 167
Query: 358 QELLAEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRPTEIRFFYK------QA 411
L + N N+ ++V + R ++ + T + R T+ ++ K
Sbjct: 168 SRLHGDDNGWTPNLDSNKEYLQVDL-RFLTMLTAIATQGAISRETQNGYYVKSYKLEVST 226
Query: 412 ESENFVVYFPNFNLTMRDPGNYG-ELAMITLPKFVQARFVILGIVSYMDNACLKFELMGC 470
E+++VY N + N E+ + L + RFV + ++ L+ EL GC
Sbjct: 227 NGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLELFGC 286
>pdb|3ERB|A Chain A, The Crystal Structure Of C2b, A Fragment Of Complement
Component C2 Produced During C3-Convertase Formation
Length = 223
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 142 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV--CSDPGRPVDGYQVATSYEQ 199
F C+D F L G V +C+ NG+WD C+ C +PG + V T +
Sbjct: 95 FECEDGFILRGSP-----VRQCRPNGMWDGETAVCDNGAGHCPNPG--ISLGAVRTGF-- 145
Query: 200 VRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV 259
++G+ RY+ C L G +++ CQ NG+W + C P
Sbjct: 146 ------RFGHGDKVRYR------CSSNLVLTGSSER-----ECQGNGVWSGTEPICRQPY 188
Query: 260 CSD 262
D
Sbjct: 189 SYD 191
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 48/211 (22%)
Query: 289 VQFGCNKPGYILINPR-----------PITCVREPECKIIKPLGLASGRIPDSSINATS- 336
++ +KPG+ L++ P V + ECK+ P+GL++G I DS I A+
Sbjct: 295 LEMKASKPGWWLLDTEVGEIQRAGMQTPFLIV-DRECKM--PMGLSTGLIADSQIQASEF 351
Query: 337 ---ESPYLVRVNACSVPLIPGPRVQELLAEKNVRLFNVLRTLANMEVYV---YRLAILVK 390
P L R+N G +AEK L T N E ++ + +L+
Sbjct: 352 WGYWEPKLARLNN-------GGSYNAWIAEK-------LSTEFNPEPWIQVDMQKEVLLT 397
Query: 391 GVVTNDIVGRPTEIRFFYK-------QAESENFVVYFPNFNLTMRDPGNYGELAMITLPK 443
G+ T G ++ +Y + +N+ ++ N + G + + I +
Sbjct: 398 GIQTQ---GAKHYLKPYYTTEFCVAYSLDRKNWRIFKGNSTRNVMYFGGNSDASTIKENQ 454
Query: 444 F---VQARFVILGIVSYMDNACLKFELMGCE 471
V AR++ + + L+ EL GCE
Sbjct: 455 IDPPVVARYIRISPTGSYNKPALRLELQGCE 485
>pdb|3U3P|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
pdb|3U3Q|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
pdb|3U3S|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
pdb|3U3T|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
pdb|3U3V|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
Length = 313
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 5 QVPRCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREE-GSKAVQECV 63
QV C CPAGT+ + CT N VC CP+GT+TR E G + +C
Sbjct: 22 QVLTCDKCPAGTYVS---EHCT---------NTSLRVCSSCPVGTFTRHENGIEKCHDCS 69
Query: 64 PVCGY 68
C +
Sbjct: 70 QPCPW 74
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 18 AGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYS--PTG 75
A + + CT CP G +Q+N CP+G R++G++ C GT+S P+
Sbjct: 83 AALTDRECT-CPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSS 141
Query: 76 LVPC 79
++ C
Sbjct: 142 VMKC 145
>pdb|2QY0|A Chain A, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|C Chain C, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 159
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 21/146 (14%)
Query: 135 RYQSSFFFGCQDTFKL-AGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQV 193
+++ F C+ ++L G + CQ +G W RC+ C P +G
Sbjct: 25 QFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNG--- 81
Query: 194 ATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKL---AGQTDKNDNVVRCQANGIWDF 250
RY N R Q ++ + +K+ AG + V C A GIW
Sbjct: 82 -----DFRYTTTMGVNTYKARIQ---YYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKN 133
Query: 251 GDL-----RCEGPVCSDPGRPVDGYQ 271
RC PVC P PV+ Q
Sbjct: 134 EQKGEKIPRCL-PVCGKPVNPVEQRQ 158
>pdb|3QO4|A Chain A, The Crystal Structure Of Death Receptor 6
Length = 181
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 5 QVPRCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREE-GSKAVQECV 63
QV C CPAGT+ + CT N VC CP+GT+TR E G + +C
Sbjct: 26 QVLTCDKCPAGTYV---SEHCT---------NTSLRVCSSCPVGTFTRHENGIEKCHDCS 73
Query: 64 PVCGY 68
C +
Sbjct: 74 QPCPW 78
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 18 AGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYS--PTG 75
A + + CT CP G +Q+N CP+G R++G++ C GT+S P+
Sbjct: 87 AALTDRECT-CPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSS 145
Query: 76 LVPC 79
++ C
Sbjct: 146 VMKC 149
>pdb|2XRB|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
pdb|2XRD|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
Length = 290
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 92/269 (34%), Gaps = 50/269 (18%)
Query: 128 YGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRP 187
Y ++ +S+F G ++ K + C+ N +W C C P P
Sbjct: 46 YAKPINPTDESTFPVGTSLKYECRPGYIKRQFSITCEVNSVWTSPQDVCIRKQCETPLDP 105
Query: 188 VDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGI 247
+G + D R+ SS + C + ++L G + + +
Sbjct: 106 QNGIVHVNT---------------DIRFGSSITYTCNEGYRLIGSSSA--MCIISDQSVA 148
Query: 248 WDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCN-----KPGYILIN 302
WD CE C P +G + + E Y G V + CN K + L+
Sbjct: 149 WDAEAPICESIPCEIPPSIPNGDFFSPNREDFHY----GMVVTYQCNTDARGKKLFNLVG 204
Query: 303 PRPITCVREPECKIIKPLGLASGRIPDSSINATSESPYLVRVNACSVPLIPGPRVQELLA 362
I C I +G+ SG P + +N C+ P + ++
Sbjct: 205 EPSIHCT-----SIDGQVGVWSG-----------PPPQCIELNKCTPPHVE----NAVIV 244
Query: 363 EKNVRLFNVLRTLANMEVYVYRLAILVKG 391
KN LF +L +M + + ++KG
Sbjct: 245 SKNKSLF----SLRDMVEFRCQDGFMMKG 269
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 21/146 (14%)
Query: 135 RYQSSFFFGCQDTFKL-AGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQV 193
+++ F C+ ++L G + CQ +G W RC+ C P +G
Sbjct: 23 QFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNG--- 79
Query: 194 ATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKL---AGQTDKNDNVVRCQANGIWDF 250
RY N R Q ++ + +K+ AG + V C A GIW
Sbjct: 80 -----DFRYTTTMGVNTYKARIQ---YYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKN 131
Query: 251 GDL-----RCEGPVCSDPGRPVDGYQ 271
RC PVC P PV+ Q
Sbjct: 132 EQKGEKIPRCL-PVCGKPVNPVEQRQ 156
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 44 KCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLECPRNSYTG--EPPVG-GHKDCE 100
K P+ RE G+ + G + P + + R G E PVG G K
Sbjct: 46 KAPLAYEVREAGASVFRR-----GIASGVPQETIESIRKTRVVLKGPLETPVGYGEKSAN 100
Query: 101 ACPANMF-TYQPAAPARNFCRVPTPGAEYG 129
+F TY P R F VPTP A G
Sbjct: 101 VTLRKLFETYANVRPVREFPNVPTPYAGRG 130
>pdb|2EHF|A Chain A, Solution Structure Of The Third Sushi Domain From Human
Cub And Sushi Domain-Containing Protein 1
Length = 73
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 21/78 (26%)
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
C DPG P G + +S+ + + F C F+L G+ V+
Sbjct: 14 CGDPGIPAYGKRTGSSF----------------LHGDTLTFECPAAFELVGE-----RVI 52
Query: 241 RCQANGIWDFGDLRCEGP 258
CQ N W C GP
Sbjct: 53 TCQQNNQWSGNKPSCSGP 70
>pdb|1NTJ|A Chain A, Model Of Rat Crry Determined By Solution Scattering, Curve
Fitting And Homology Modelling
Length = 320
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 92/269 (34%), Gaps = 50/269 (18%)
Query: 128 YGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRP 187
Y ++ +S+F G ++ K + C+ N +W C C P P
Sbjct: 13 YAKPINPTDESTFPVGTSLKYECRPGYIKRQFSITCEVNSVWTSPQDVCIRKQCETPLDP 72
Query: 188 VDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGI 247
+G + D R+ SS + C + ++L G + + +
Sbjct: 73 QNGIVHVNT---------------DIRFGSSITYTCNEGYRLIGSSSA--MCIISDQSVA 115
Query: 248 WDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCN-----KPGYILIN 302
WD CE C P +G + + E Y G V + CN K + L+
Sbjct: 116 WDAEAPICESIPCEIPPSIPNGDFFSPNREDFHY----GMVVTYQCNTDARGKKLFNLVG 171
Query: 303 PRPITCVREPECKIIKPLGLASGRIPDSSINATSESPYLVRVNACSVPLIPGPRVQELLA 362
I C I +G+ SG P + +N C+ P + ++
Sbjct: 172 EPSIHCT-----SIDGQVGVWSG-----------PPPQCIELNKCTPPHVE----NAVIV 211
Query: 363 EKNVRLFNVLRTLANMEVYVYRLAILVKG 391
KN LF +L +M + + ++KG
Sbjct: 212 SKNKSLF----SLRDMVEFRCQDGFMMKG 236
>pdb|1YNA|A Chain A, Endo-1,4-Beta-Xylanase, Room Temperature, Ph 4.0
Length = 194
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 244 ANGIWDFGDLRCEGPV-----CSDPGRP-VDGYQVATSYEQVRYDDEQGSEVQFGCN 294
++G D G + C+G + + P +DG Q Y VR D VQ GC+
Sbjct: 99 SSGATDLGTVECDGSIYRLGKTTRVNAPSIDGTQTFDQYWSVRQDKRTSGTVQTGCH 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,865,440
Number of Sequences: 62578
Number of extensions: 956091
Number of successful extensions: 1664
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 78
length of query: 642
length of database: 14,973,337
effective HSP length: 105
effective length of query: 537
effective length of database: 8,402,647
effective search space: 4512221439
effective search space used: 4512221439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)