Query psy833
Match_columns 642
No_of_seqs 493 out of 2444
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:56:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02927 secreted complement-b 100.0 6.9E-30 1.5E-34 259.5 18.4 158 116-310 18-192 (263)
2 PHA02927 secreted complement-b 99.9 8.9E-26 1.9E-30 229.4 17.9 202 65-330 53-261 (263)
3 PHA02639 EEV host range protei 99.9 1.4E-25 3E-30 228.5 16.6 164 116-310 19-194 (295)
4 PHA02954 EEV membrane glycopro 99.9 4.6E-24 1E-28 218.2 16.7 147 116-310 18-173 (317)
5 PHA02639 EEV host range protei 99.9 1.4E-23 3E-28 213.9 16.4 178 175-493 16-210 (295)
6 PHA02831 EEV host range protei 99.9 2.9E-21 6.4E-26 192.5 13.4 143 140-330 46-195 (268)
7 PHA02954 EEV membrane glycopro 99.9 1.3E-20 2.8E-25 192.9 17.0 195 65-338 47-245 (317)
8 PHA02831 EEV host range protei 99.8 1E-18 2.3E-23 174.3 11.7 150 65-266 49-206 (268)
9 PHA02817 EEV Host range protei 99.7 9.4E-18 2E-22 163.0 11.6 112 174-310 17-134 (225)
10 PHA02817 EEV Host range protei 99.7 2.8E-17 6E-22 159.8 11.5 119 116-258 21-148 (225)
11 PF02494 HYR: HYR domain; Int 99.5 9E-14 1.9E-18 115.4 10.6 80 489-572 1-81 (81)
12 PF02494 HYR: HYR domain; Int 99.2 1.8E-11 3.8E-16 101.6 7.6 65 573-642 1-67 (81)
13 PF07699 GCC2_GCC3: GCC2 and G 98.8 2.7E-09 5.9E-14 78.8 3.5 48 15-62 1-48 (48)
14 cd00033 CCP Complement control 98.7 1.9E-08 4.1E-13 77.0 5.6 57 181-256 1-57 (57)
15 PF00084 Sushi: Sushi domain ( 98.7 1.3E-08 2.9E-13 77.7 3.9 56 181-255 1-56 (56)
16 smart00032 CCP Domain abundant 98.7 3.3E-08 7.2E-13 75.5 5.7 57 181-255 1-57 (57)
17 cd00033 CCP Complement control 98.3 9.9E-07 2.1E-11 67.3 4.9 51 122-177 3-57 (57)
18 smart00032 CCP Domain abundant 98.3 1.4E-06 3E-11 66.4 5.0 50 122-176 3-57 (57)
19 PF00084 Sushi: Sushi domain ( 98.2 1.1E-06 2.3E-11 67.0 3.2 49 123-176 4-56 (56)
20 PF07699 GCC2_GCC3: GCC2 and G 98.1 3.2E-06 7E-11 62.3 3.6 48 69-119 1-48 (48)
21 KOG0196|consensus 97.8 1.3E-05 2.8E-10 89.3 4.5 65 6-76 258-322 (996)
22 cd00185 TNFR Tumor necrosis fa 97.7 0.00012 2.6E-09 62.9 6.8 60 12-72 1-65 (98)
23 cd00185 TNFR Tumor necrosis fa 97.4 0.00033 7.2E-09 60.1 5.9 74 6-82 11-94 (98)
24 PTZ00214 high cysteine membran 97.1 0.0057 1.2E-07 71.4 14.1 101 6-112 524-661 (800)
25 PF03302 VSP: Giardia variant- 96.7 0.016 3.6E-07 62.6 12.5 36 220-263 303-341 (397)
26 KOG0196|consensus 96.7 0.0028 6E-08 71.4 6.4 62 66-132 279-341 (996)
27 PF07562 NCD3G: Nine Cysteines 96.5 0.0011 2.3E-08 50.2 1.1 44 7-50 3-53 (54)
28 KOG4260|consensus 96.3 0.0041 8.9E-08 61.2 4.3 83 65-150 183-269 (350)
29 PHA02637 TNF-alpha-receptor-li 96.3 0.0054 1.2E-07 53.9 4.6 25 27-53 31-55 (127)
30 PTZ00214 high cysteine membran 94.7 0.12 2.7E-06 60.5 9.5 14 141-154 752-765 (800)
31 PHA02637 TNF-alpha-receptor-li 94.1 0.075 1.6E-06 46.9 4.4 24 11-35 31-54 (127)
32 PF07562 NCD3G: Nine Cysteines 93.3 0.02 4.3E-07 43.3 -0.4 25 79-106 28-52 (54)
33 PF13750 Big_3_3: Bacterial Ig 93.3 0.59 1.3E-05 43.8 9.4 62 548-616 15-79 (158)
34 KOG0994|consensus 92.6 0.38 8.2E-06 56.4 8.1 175 22-262 792-971 (1758)
35 KOG4260|consensus 91.6 0.14 3.1E-06 50.6 2.9 23 28-55 132-154 (350)
36 PF03302 VSP: Giardia variant- 91.4 0.68 1.5E-05 50.2 8.3 92 8-109 38-135 (397)
37 KOG4289|consensus 90.7 0.33 7.1E-06 58.1 5.2 159 58-256 1737-1908(2531)
38 KOG0994|consensus 90.0 0.67 1.4E-05 54.5 6.8 37 141-185 1085-1121(1758)
39 PF12245 Big_3_2: Bacterial Ig 87.6 1.6 3.5E-05 33.6 5.5 34 546-579 21-54 (60)
40 PF13754 Big_3_4: Bacterial Ig 87.4 0.63 1.4E-05 35.0 3.1 31 547-578 23-54 (54)
41 KOG4289|consensus 87.0 1 2.2E-05 54.3 5.7 135 23-173 1739-1903(2531)
42 PF13753 SWM_repeat: Putative 85.0 9 0.00019 40.2 11.5 33 548-581 12-44 (317)
43 PTZ00382 Variant-specific surf 81.6 1.8 3.8E-05 36.9 3.6 24 6-29 3-26 (96)
44 cd00064 FU Furin-like repeats. 78.2 2 4.2E-05 31.5 2.5 12 61-72 30-41 (49)
45 KOG3512|consensus 77.1 3.3 7.2E-05 44.5 4.6 85 6-104 358-449 (592)
46 PHA02714 CD-30-like protein; P 76.2 4.2 9.1E-05 34.0 4.0 57 27-86 23-84 (110)
47 KOG4611|consensus 75.8 2.7 5.9E-05 43.4 3.5 59 23-84 50-120 (747)
48 PF14843 GF_recep_IV: Growth f 75.6 2.1 4.6E-05 38.8 2.5 41 5-49 15-58 (132)
49 PF00757 Furin-like: Furin-lik 75.5 1.2 2.5E-05 41.4 0.7 66 6-83 64-141 (149)
50 PF07354 Sp38: Zona-pellucida- 73.9 2.3 5E-05 42.5 2.4 57 30-86 206-263 (271)
51 KOG1836|consensus 72.4 9.4 0.0002 48.5 7.6 11 174-184 886-896 (1705)
52 cd00064 FU Furin-like repeats. 71.3 4.1 8.9E-05 29.7 2.7 9 9-17 17-25 (49)
53 KOG4611|consensus 68.7 5.3 0.00011 41.4 3.7 45 7-53 16-63 (747)
54 smart00261 FU Furin-like repea 68.4 5.9 0.00013 28.4 2.9 9 41-49 21-29 (46)
55 PF02793 HRM: Hormone receptor 65.2 8.2 0.00018 30.2 3.4 40 212-251 16-55 (66)
56 smart00261 FU Furin-like repea 64.5 5 0.00011 28.8 1.9 15 22-36 19-33 (46)
57 KOG1836|consensus 63.2 11 0.00024 48.0 5.6 68 11-83 698-781 (1705)
58 PF00020 TNFR_c6: TNFR/NGFR cy 57.6 5.9 0.00013 27.4 1.2 9 28-36 1-9 (39)
59 PTZ00382 Variant-specific surf 56.4 15 0.00032 31.3 3.7 25 22-47 3-27 (96)
60 KOG4258|consensus 55.3 4.2 9.1E-05 47.0 0.2 15 548-562 897-911 (1025)
61 PF12662 cEGF: Complement Clr- 53.3 10 0.00023 23.4 1.6 15 140-154 2-16 (24)
62 smart00180 EGF_Lam Laminin-typ 47.0 13 0.00028 26.9 1.6 10 42-51 31-40 (46)
63 KOG1025|consensus 46.2 19 0.00041 42.1 3.5 73 2-83 244-320 (1177)
64 smart00008 HormR Domain presen 46.1 23 0.00051 28.1 3.1 37 212-250 17-53 (70)
65 PF00757 Furin-like: Furin-lik 43.8 7.9 0.00017 35.9 0.1 66 22-103 64-141 (149)
66 smart00208 TNFR Tumor necrosis 41.4 25 0.00054 24.1 2.3 8 28-35 1-8 (39)
67 smart00736 CADG Dystroglycan-t 41.1 2.2E+02 0.0047 23.9 9.3 31 546-576 65-95 (97)
68 KOG1225|consensus 40.9 50 0.0011 37.0 5.7 9 141-149 328-336 (525)
69 PF06247 Plasmod_Pvs28: Plasmo 40.9 38 0.00082 32.4 4.1 111 127-299 9-119 (197)
70 cd00055 EGF_Lam Laminin-type e 36.4 32 0.00068 25.2 2.3 9 42-50 32-40 (50)
71 KOG1214|consensus 32.8 1.1E+02 0.0024 35.9 6.7 54 97-154 809-862 (1289)
72 PF14704 DERM: Dermatopontin 31.9 1.4E+02 0.0031 27.6 6.5 122 140-304 7-131 (152)
73 KOG1225|consensus 29.9 1.2E+02 0.0025 34.2 6.3 10 161-170 316-325 (525)
74 PF09463 Opy2: Opy2 protein; 24.2 50 0.0011 22.5 1.4 22 24-46 10-31 (35)
75 PF07354 Sp38: Zona-pellucida- 24.0 67 0.0014 32.5 2.9 10 11-20 221-230 (271)
76 PF00053 Laminin_EGF: Laminin 23.7 33 0.00071 24.9 0.5 11 42-52 31-41 (49)
77 PF13948 DUF4215: Domain of un 22.5 76 0.0016 23.0 2.2 6 65-70 20-25 (47)
78 PF10080 DUF2318: Predicted me 22.2 33 0.00071 29.6 0.3 31 22-53 35-66 (102)
79 COG3479 Phenolic acid decarbox 22.1 1.2E+02 0.0025 27.3 3.6 29 588-627 57-86 (175)
80 PF09064 Tme5_EGF_like: Thromb 22.0 78 0.0017 21.4 1.9 14 22-36 17-30 (34)
81 PF13753 SWM_repeat: Putative 20.7 1.5E+02 0.0032 30.9 5.0 33 548-581 110-147 (317)
82 PF14704 DERM: Dermatopontin 20.0 1.2E+02 0.0026 28.1 3.6 74 215-306 3-78 (152)
83 smart00231 FA58C Coagulation f 20.0 1.1E+02 0.0023 27.6 3.2 33 438-470 107-139 (139)
No 1
>PHA02927 secreted complement-binding protein; Provisional
Probab=99.97 E-value=6.9e-30 Score=259.48 Aligned_cols=158 Identities=22% Similarity=0.496 Sum_probs=129.5
Q ss_pred CCCCCCCCCCCCccceecC-----CCCee----eEEeCCCCeecc--CCcCCCCceEecccCCeeecCCCCccCCcCCCC
Q psy833 116 RNFCRVPTPGAEYGNFLDT-----RYQSS----FFFGCQDTFKLA--GQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDP 184 (642)
Q Consensus 116 ~~~C~~~~~~p~nG~~~~~-----~~~~~----~~~~C~~Gy~l~--g~~~~~~~~~~C~~~G~Ws~~~p~C~~~~C~~p 184 (642)
...|+ .+..|.||.+... +..|. .+|+|++||.+. |.. .++|+.+| |+. .|.|+++.|+.|
T Consensus 18 ~~~c~-~~~~~~~~~~~~~~~~~~~~~y~~g~~v~y~C~~Gy~~~~~g~~-----~~~C~~~g-Ws~-~p~C~~~~C~~p 89 (263)
T PHA02927 18 LSCCT-IPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPI-----YAKCTGTG-WTL-FNQCIKRRCPSP 89 (263)
T ss_pred hccCC-CCCcccceeeccccccccCceeCCCCEEEEEeCCCceecCCCcc-----EEEecCCC-CCC-CCcEEeCCCcCC
Confidence 35577 5577888887642 22232 299999999975 777 89999988 995 799999999999
Q ss_pred CCCCCceeeecceeeeeeCCcCCCCccccccCcEEEEEcccCccccCCccCCCceEEeccCC----eecCCCCceecCcC
Q psy833 185 GRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG----IWDFGDLRCEGPVC 260 (642)
Q Consensus 185 ~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G----~Ws~~~P~C~~~~C 260 (642)
+.+.||.+.. ..+.+|++|.|+|++||+|+|.+. ++|+++| +|++..|.|+.+.|
T Consensus 90 ~~i~NG~~~~----------------~~~~~G~~v~y~C~~Gy~l~G~~~-----~~C~~~~~g~~~Ws~~~P~C~~~~C 148 (263)
T PHA02927 90 RDIDNGQLDI----------------GGVDFGSSITYSCNSGYQLIGESK-----SYCELGSTGSMVWNPEAPICESVKC 148 (263)
T ss_pred CCCCCCEEeC----------------CCccCCCEEEEECCCCCEEcCCCe-----eEEEeCCCCcceECCCCCccccccC
Confidence 9999998322 236899999999999999999864 8998753 79999999999999
Q ss_pred CCCCCCCCcEEEccC--CccccccCCCCCEEEEEccCCCeEEeCCCceeeCC
Q psy833 261 SDPGRPVDGYQVATS--YEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVR 310 (642)
Q Consensus 261 ~~p~~~~~g~~~~~~--~~~~~~~~~~gs~~~~~C~~~Gy~l~G~~~~~C~~ 310 (642)
+.|+.+.||.+.... +. +|++|+|+|+ +||+|+|...++|++
T Consensus 149 ~~P~~~~nG~~~~~~~~y~-------~g~~v~y~C~-~Gy~l~G~~~~~C~~ 192 (263)
T PHA02927 149 QSPPSISNGRHNGYEDFYT-------DGSVVTYSCN-SGYSLIGNSGVLCSG 192 (263)
T ss_pred CCCCCCCCcEEcCCccccc-------CCCEEEEECC-CCCEECCCCeeEECC
Confidence 999999999986531 33 8999999999 999999988887753
No 2
>PHA02927 secreted complement-binding protein; Provisional
Probab=99.94 E-value=8.9e-26 Score=229.42 Aligned_cols=202 Identities=20% Similarity=0.405 Sum_probs=155.7
Q ss_pred CCCCCeecC-CCCCCcccCCCCcccCCCCCCCCCCCCCCCCceeeccCCCCCCCCCCCCCCCCCccceecCCCCe--eeE
Q psy833 65 VCGYGTYSP-TGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQS--SFF 141 (642)
Q Consensus 65 ~C~~G~y~~-~g~~~C~~C~~G~y~~~~p~~g~~~C~~Cp~G~~~~~~~~~s~~~C~~~~~~p~nG~~~~~~~~~--~~~ 141 (642)
.|..||+.. .|... ..|..+.|... ..|. ...|+ .++.++||.+......+ .+.
T Consensus 53 ~C~~Gy~~~~~g~~~-~~C~~~gWs~~------p~C~---------------~~~C~-~p~~i~NG~~~~~~~~~G~~v~ 109 (263)
T PHA02927 53 LCLPGYRKQKMGPIY-AKCTGTGWTLF------NQCI---------------KRRCP-SPRDIDNGQLDIGGVDFGSSIT 109 (263)
T ss_pred EeCCCceecCCCccE-EEecCCCCCCC------CcEE---------------eCCCc-CCCCCCCCEEeCCCccCCCEEE
Confidence 788898864 24321 23444447632 2454 45787 56788999987653332 239
Q ss_pred EeCCCCeeccCCcCCCCceEecccCC----eeecCCCCccCCcCCCCCCCCCceeeecceeeeeeCCcCCCCccccccCc
Q psy833 142 FGCQDTFKLAGQTDKNDNVVRCQANG----IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQS 217 (642)
Q Consensus 142 ~~C~~Gy~l~g~~~~~~~~~~C~~~G----~Ws~~~p~C~~~~C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs 217 (642)
|+|++||+|.|.. .++|+.+| +|+...|.|+.+.|+.|+.+.||.+... ...|.+|+
T Consensus 110 y~C~~Gy~l~G~~-----~~~C~~~~~g~~~Ws~~~P~C~~~~C~~P~~~~nG~~~~~--------------~~~y~~g~ 170 (263)
T PHA02927 110 YSCNSGYQLIGES-----KSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGY--------------EDFYTDGS 170 (263)
T ss_pred EECCCCCEEcCCC-----eeEEEeCCCCcceECCCCCccccccCCCCCCCCCcEEcCC--------------cccccCCC
Confidence 9999999999999 99999753 8999999999999999999999983211 13478899
Q ss_pred EEEEEcccCccccCCccCCCceEEeccCCeecCCCCceecCcCCCCCCCCCcEEEccCCccccccCCCCCEEEEEccCCC
Q psy833 218 SFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPG 297 (642)
Q Consensus 218 ~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~~~~C~~p~~~~~g~~~~~~~~~~~~~~~~gs~~~~~C~~~G 297 (642)
+|+|+|++||+|.|.+. ++|+ +|+|+. +|.|+.+.|+.|. +.||.+.......+. +|++|+|+|+ +|
T Consensus 171 ~v~y~C~~Gy~l~G~~~-----~~C~-~G~Ws~-~P~C~~v~C~~P~-i~ng~~~~~~k~~y~----~g~~v~y~C~-~G 237 (263)
T PHA02927 171 VVTYSCNSGYSLIGNSG-----VLCS-GGEWSD-PPTCQIVKCPHPT-ISNGYLSSGFKRSYS----YNDNVDFKCK-YG 237 (263)
T ss_pred EEEEECCCCCEECCCCe-----eEEC-CCccCC-CCeEeEeECcCCC-CCCCEEecCCCCccc----cCCEEEEECC-CC
Confidence 99999999999999975 8997 899996 7999999999875 568887643211122 9999999999 99
Q ss_pred eEEeCCCceeeCCCCceEEecCCCCCCccCCCC
Q psy833 298 YILINPRPITCVREPECKIIKPLGLASGRIPDS 330 (642)
Q Consensus 298 y~l~G~~~~~C~~~P~C~~v~p~~~~~g~~~~~ 330 (642)
|.|.|++.++|+.+ +.|++.+|.|
T Consensus 238 y~l~G~~~~~C~~~---------g~Ws~~~P~C 261 (263)
T PHA02927 238 YKLSGSSSSTCSPG---------NTWQPELPKC 261 (263)
T ss_pred CeEcCCCCeEECCC---------CEECCCCCee
Confidence 99999999999985 7888877754
No 3
>PHA02639 EEV host range protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=228.51 Aligned_cols=164 Identities=19% Similarity=0.421 Sum_probs=135.3
Q ss_pred CCCCCCCCCCCCccceecCCCCeee----EEeCCCCeeccCCcCCCCceEecccC---CeeecCCCCccCCcCCCCCCCC
Q psy833 116 RNFCRVPTPGAEYGNFLDTRYQSSF----FFGCQDTFKLAGQTDKNDNVVRCQAN---GIWDFGDLRCEGPVCSDPGRPV 188 (642)
Q Consensus 116 ~~~C~~~~~~p~nG~~~~~~~~~~~----~~~C~~Gy~l~g~~~~~~~~~~C~~~---G~Ws~~~p~C~~~~C~~p~~~~ 188 (642)
...|+ .++.++||.+......|.+ .|+|++||+|.|.. .++|+++ |+|++..|.|+.+.|+.|+.+.
T Consensus 19 ~i~C~-~P~~i~NG~v~~~~~~y~~G~~V~Y~Cn~GY~L~G~~-----~~~C~~d~~nG~WS~~~P~C~~~~C~~Pp~~~ 92 (295)
T PHA02639 19 SIYCD-KPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDR-----FRTCIKDKNNAIWSNKAPFCMLKECNDPPSII 92 (295)
T ss_pred ccCCc-CCCCCCCCEEeccCCcccCCCEEEEEeCCCCEECCCC-----eEEEeCCCCCCEECCCCCEEeeccCcCCCCCC
Confidence 46787 4567899998765433433 99999999999999 9999864 6999999999999999999999
Q ss_pred CceeeecceeeeeeCCcCCCCccccccCcEEEEEccc----CccccCCccCCCceEEeccCCeecCCCCceecCcCCCCC
Q psy833 189 DGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQD----TFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPG 264 (642)
Q Consensus 189 ~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~----Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~~~~C~~p~ 264 (642)
||.+... ...|.+|++++|+|++ ||.|.|... ++|+++|+|++..|.|+.+.|+.|
T Consensus 93 nG~i~~~--------------~~~y~~G~~V~y~C~~g~~~gY~L~G~~~-----~~C~~dG~WS~~~P~C~~i~C~~P- 152 (295)
T PHA02639 93 NGKIYNK--------------REMYKVGDEIYYVCNEHKGVQYSLVGNEK-----ITCIQDKSWKPDPPICKMINCRFP- 152 (295)
T ss_pred CcEEecC--------------CCceECCCEEEEEeCCCCCCceEECCCCe-----EEECCCCeECCCCCeeeeEEeCCC-
Confidence 9983321 1458999999999999 599999975 899999999999999999999977
Q ss_pred CCCCcEEEcc-CCccccccCCCCCEEEEEccCCCeEEeCCCceeeCC
Q psy833 265 RPVDGYQVAT-SYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVR 310 (642)
Q Consensus 265 ~~~~g~~~~~-~~~~~~~~~~~gs~~~~~C~~~Gy~l~G~~~~~C~~ 310 (642)
.+.||.+... ....+. +|++|+|+|+ +||.|+|+..++|+.
T Consensus 153 ~i~nG~v~~~~~~~~~~----yg~~V~fsC~-~GY~L~Gs~~~tC~~ 194 (295)
T PHA02639 153 ALQNGYINGIPSNKKFY----YKTRVGFSCK-SGFDLVGEKYSTCNI 194 (295)
T ss_pred CCCCCceEcccCCCcee----cCCEEEEEcC-CCCeEcCCCcEEECC
Confidence 4568877642 222233 8999999999 999999999999977
No 4
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=99.91 E-value=4.6e-24 Score=218.23 Aligned_cols=147 Identities=20% Similarity=0.465 Sum_probs=113.1
Q ss_pred CCCCCCCCCCCCccceecCCCCee----eEEeCCCCeeccCCcCCCCceEecccCCeeecCCCCccCCcCCCCCCCCCce
Q psy833 116 RNFCRVPTPGAEYGNFLDTRYQSS----FFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGY 191 (642)
Q Consensus 116 ~~~C~~~~~~p~nG~~~~~~~~~~----~~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C~~~~C~~p~~~~~g~ 191 (642)
...|.. +...||.+......|. ++|+|++||.+.+ . .++|+.+ .|+...| |+ ..|+.|..+.++.
T Consensus 18 ~~~C~~--P~~~ng~~~~~~~~Y~~gd~V~y~C~~GY~l~~-~-----~itC~~~-~WS~~~p-C~-k~C~~p~~~~~~~ 86 (317)
T PHA02954 18 YSTCTV--PTMNNAKLTSTETSFNDKQKVTFTCDSGYYSLD-P-----NAVCETD-KWKYENP-CK-KMCTVSDYVSELY 86 (317)
T ss_pred hCcCCC--CCCCcCEEcCCcccccCCCEEEEEcCCCcccCC-C-----CeEECCC-cccCCCC-CC-CcCCCCccccccc
Confidence 456763 3457888776433343 3999999999886 5 6889766 5998777 98 4699877666554
Q ss_pred eeecceeeeeeCCcCCCCccccccCcEEEEEcccCccccCCccCCCceEEecc---CCeecCCCCceecCcCCCCCCCCC
Q psy833 192 QVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQA---NGIWDFGDLRCEGPVCSDPGRPVD 268 (642)
Q Consensus 192 ~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~---~G~Ws~~~P~C~~~~C~~p~~~~~ 268 (642)
.. ..|.+|++++|+|++||. .++|+. ++.|+. .|+|+.+.|++| .+.|
T Consensus 87 -~~----------------~~y~~G~~V~ysC~~Gy~----------~~~C~~~g~~~~WS~-~ptC~~i~C~pP-~i~N 137 (317)
T PHA02954 87 -DK----------------PLYEVNSTITLICKDETK----------YFRCEEKNGNTSWND-TVTCPNAECQPL-QLEH 137 (317)
T ss_pred -cC----------------CCccCCCEEEEEECCCCc----------EEEeCCCCCCCccCC-CCeecceECCCC-CCCC
Confidence 11 348999999999999993 278976 468996 579999999755 5779
Q ss_pred cEEEcc--CCccccccCCCCCEEEEEccCCCeEEeCCCceeeCC
Q psy833 269 GYQVAT--SYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVR 310 (642)
Q Consensus 269 g~~~~~--~~~~~~~~~~~gs~~~~~C~~~Gy~l~G~~~~~C~~ 310 (642)
|.+... .|. +|++|+|+|+ +||.|+|+..++|+.
T Consensus 138 G~~~~~~~~Y~-------yGd~VtysC~-~GY~L~Gs~~i~C~~ 173 (317)
T PHA02954 138 GSCQPVKEKYS-------FGEHITINCD-VGYEVIGASYISCTA 173 (317)
T ss_pred CeeccCCCcee-------CCCEEEEEcC-CCCEECcCCeeEECC
Confidence 998642 233 9999999999 999999999999977
No 5
>PHA02639 EEV host range protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=213.91 Aligned_cols=178 Identities=20% Similarity=0.386 Sum_probs=139.6
Q ss_pred CccCCcCCCCCCCCCceeeecceeeeeeCCcCCCCccccccCcEEEEEcccCccccCCccCCCceEEeccC---CeecCC
Q psy833 175 RCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQAN---GIWDFG 251 (642)
Q Consensus 175 ~C~~~~C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~---G~Ws~~ 251 (642)
.++.+.|+.|+.+.||.+... ...|.+|+++.|+|++||+|.|... ++|+++ |+|++.
T Consensus 16 ~~k~i~C~~P~~i~NG~v~~~--------------~~~y~~G~~V~Y~Cn~GY~L~G~~~-----~~C~~d~~nG~WS~~ 76 (295)
T PHA02639 16 GVKSIYCDKPDDISNGFITEL--------------MEKYEIGKLIEYTCNTDYALIGDRF-----RTCIKDKNNAIWSNK 76 (295)
T ss_pred CccccCCcCCCCCCCCEEecc--------------CCcccCCCEEEEEeCCCCEECCCCe-----EEEeCCCCCCEECCC
Confidence 456778999999999983321 1358999999999999999999864 899864 699999
Q ss_pred CCceecCcCCCCCCCCCcEEEcc--CCccccccCCCCCEEEEEccCC----CeEEeCCCceeeCCCCceEEecCCCCCCc
Q psy833 252 DLRCEGPVCSDPGRPVDGYQVAT--SYEQVRYDDEQGSEVQFGCNKP----GYILINPRPITCVREPECKIIKPLGLASG 325 (642)
Q Consensus 252 ~P~C~~~~C~~p~~~~~g~~~~~--~~~~~~~~~~~gs~~~~~C~~~----Gy~l~G~~~~~C~~~P~C~~v~p~~~~~g 325 (642)
.|.|+.+.|+.|+.+.||.+... .|. +|++++|+|+ + ||.|+|...++|+.
T Consensus 77 ~P~C~~~~C~~Pp~~~nG~i~~~~~~y~-------~G~~V~y~C~-~g~~~gY~L~G~~~~~C~~--------------- 133 (295)
T PHA02639 77 APFCMLKECNDPPSIINGKIYNKREMYK-------VGDEIYYVCN-EHKGVQYSLVGNEKITCIQ--------------- 133 (295)
T ss_pred CCEEeeccCcCCCCCCCcEEecCCCceE-------CCCEEEEEeC-CCCCCceEECCCCeEEECC---------------
Confidence 99999999999999999998753 233 8999999999 8 59998888888876
Q ss_pred cCCCCCCCccCCCcCceecccccCCCCCCCcccccccccceeeeccCC-cccCccce--eEEeeEEeeceecccccccce
Q psy833 326 RIPDSSINATSESPYLVRVNACSVPLIPGPRVQELLAEKNVRLFNVLR-TLANMEVY--VYRLAILVKGVVTNDIVGRPT 402 (642)
Q Consensus 326 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~g~~~~~~l~g~~~~~c~~~g-Ws~~~p~c--v~~~~~~~~g~~~~~~~g~~~ 402 (642)
+| |++..|.| +.|. .+ ...
T Consensus 134 ----------------------------------------------dG~WS~~~P~C~~i~C~------~P-~i~----- 155 (295)
T PHA02639 134 ----------------------------------------------DKSWKPDPPICKMINCR------FP-ALQ----- 155 (295)
T ss_pred ----------------------------------------------CCeECCCCCeeeeEEeC------CC-CCC-----
Confidence 45 88888888 4552 11 111
Q ss_pred eeeeeEeeccccceEEeeccceeccCCCCCccCcccccCccceeeeeEEeeEEEEEeCcccceeecc-----cCCCCCcC
Q psy833 403 EIRFFYKQAESENFVVYFPNFNLTMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMG-----CEEPKVEP 477 (642)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~C~~~~gf~l~G-----C~~~g~~~ 477 (642)
+|..+.. .....|.+|+.|+|+|++ ||.|+| |+++|
T Consensus 156 ---------------------------nG~v~~~-------~~~~~~~yg~~V~fsC~~--GY~L~Gs~~~tC~~nG--- 196 (295)
T PHA02639 156 ---------------------------NGYINGI-------PSNKKFYYKTRVGFSCKS--GFDLVGEKYSTCNINA--- 196 (295)
T ss_pred ---------------------------CCceEcc-------cCCCceecCCEEEEEcCC--CCeEcCCCcEEECCCC---
Confidence 1111110 012468899999999999 999999 99999
Q ss_pred cccccCCCCCCcCCCC
Q psy833 478 LLGYDYGYSPCVDNEP 493 (642)
Q Consensus 478 ~~~Ws~~~P~C~d~~p 493 (642)
+|++..|+|+...|
T Consensus 197 --~Ws~~~P~C~~~~~ 210 (295)
T PHA02639 197 --TWFPSIPTCVRNKP 210 (295)
T ss_pred --eECCCCCeEeccCC
Confidence 99999999997654
No 6
>PHA02831 EEV host range protein; Provisional
Probab=99.86 E-value=2.9e-21 Score=192.54 Aligned_cols=143 Identities=24% Similarity=0.528 Sum_probs=117.7
Q ss_pred eEEeCCCCeeccCCcCCCCceEecccCCeeecCCCCcc-CCcCCCCCCCCCceeeecceeeeeeCCcCCCCccccccCcE
Q psy833 140 FFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCE-GPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSS 218 (642)
Q Consensus 140 ~~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C~-~~~C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~ 218 (642)
+.|+|++||.+ . .++| .+|+|++. |.|. .+.|+.|+.+.||.+... ...|.+|++
T Consensus 46 V~Y~C~~GY~~---~-----~itC-~dG~WS~~-P~C~~~~~C~~Pp~i~NG~i~~~--------------~~~Y~~Gd~ 101 (268)
T PHA02831 46 LEYKCNNNFDK---V-----FVTC-NNGSWSTK-NMCIGKRNCKDPVTILNGYIKNK--------------KDQYSFGDS 101 (268)
T ss_pred EEEECCCCCEe---e-----eEEe-CCCccCCC-CcccccccCcCCCCCCCCEEecc--------------CCceeCCCE
Confidence 49999999984 4 7889 59999965 7775 567999999999983321 134899999
Q ss_pred EEEEcc----cCccccCCccCCCceEEeccCCeecCCCCceecCcCCCCCCCCCcEEEcc--CCccccccCCCCCEEEEE
Q psy833 219 FFFGCQ----DTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVAT--SYEQVRYDDEQGSEVQFG 292 (642)
Q Consensus 219 ~~~~C~----~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~~~~C~~p~~~~~g~~~~~--~~~~~~~~~~~gs~~~~~ 292 (642)
|+|+|+ +||.|.|.+. ++|+ +|+|++..|+|+.+.|+.|. +.||.+... .+. +|++|+|+
T Consensus 102 VtYsC~~g~~~GY~LvG~s~-----~tC~-dG~WS~~~P~C~~i~C~~P~-i~NG~i~~~~~~y~-------~G~~Vty~ 167 (268)
T PHA02831 102 VTYACKVNKLEKYSIVGNET-----VKCI-NKQWVPKYPVCKLIRCKYPA-LQNGFLNVFEKKFY-------YGDIVNFK 167 (268)
T ss_pred EEEECCCCCCCCeeEcCCce-----eEeC-CCcCCCCCCeeeEeeCCCCC-CCCCccccCCCcee-------cCCEEEEE
Confidence 999999 6999999975 8995 89999999999999999874 779987632 233 99999999
Q ss_pred ccCCCeEEeCCCceeeCCCCceEEecCCCCCCccCCCC
Q psy833 293 CNKPGYILINPRPITCVREPECKIIKPLGLASGRIPDS 330 (642)
Q Consensus 293 C~~~Gy~l~G~~~~~C~~~P~C~~v~p~~~~~g~~~~~ 330 (642)
|+ +||.|.|+..++|+.+ +.|++.+|.|
T Consensus 168 C~-~GY~L~Gss~~tC~~n---------G~Wsp~~P~C 195 (268)
T PHA02831 168 CK-KGFILLGSSVSTCDIN---------SIWYPGIPKC 195 (268)
T ss_pred cC-CCCEECCCccEEECCC---------CeECCCCCCc
Confidence 99 9999999999999874 5666666655
No 7
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=99.85 E-value=1.3e-20 Score=192.93 Aligned_cols=195 Identities=19% Similarity=0.398 Sum_probs=140.6
Q ss_pred CCCCCeecCCCCCCcccCCCCcccCCCCCCCCCCCCCCCCceeeccCCCCCCCCCCCCCCCCCccceecCC-CCeeeEEe
Q psy833 65 VCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTR-YQSSFFFG 143 (642)
Q Consensus 65 ~C~~G~y~~~g~~~C~~C~~G~y~~~~p~~g~~~C~~Cp~G~~~~~~~~~s~~~C~~~~~~p~nG~~~~~~-~~~~~~~~ 143 (642)
.|.+||+..... ..|..+.|+...| |. ..|.. +..+.++...... ....+.|+
T Consensus 47 ~C~~GY~l~~~~---itC~~~~WS~~~p------C~----------------k~C~~-p~~~~~~~~~~~y~~G~~V~ys 100 (317)
T PHA02954 47 TCDSGYYSLDPN---AVCETDKWKYENP------CK----------------KMCTV-SDYVSELYDKPLYEVNSTITLI 100 (317)
T ss_pred EcCCCcccCCCC---eEECCCcccCCCC------CC----------------CcCCC-CccccccccCCCccCCCEEEEE
Confidence 578899866432 5577788885422 42 12442 2333344332211 11223999
Q ss_pred CCCCeeccCCcCCCCceEeccc---CCeeecCCCCccCCcCCCCCCCCCceeeecceeeeeeCCcCCCCccccccCcEEE
Q psy833 144 CQDTFKLAGQTDKNDNVVRCQA---NGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFF 220 (642)
Q Consensus 144 C~~Gy~l~g~~~~~~~~~~C~~---~G~Ws~~~p~C~~~~C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~ 220 (642)
|++|| . .++|+. ++.|+. .|+|+.+.|++| .+.||.+... ...|.+|++++
T Consensus 101 C~~Gy-----~-----~~~C~~~g~~~~WS~-~ptC~~i~C~pP-~i~NG~~~~~--------------~~~Y~yGd~Vt 154 (317)
T PHA02954 101 CKDET-----K-----YFRCEEKNGNTSWND-TVTCPNAECQPL-QLEHGSCQPV--------------KEKYSFGEHIT 154 (317)
T ss_pred ECCCC-----c-----EEEeCCCCCCCccCC-CCeecceECCCC-CCCCCeeccC--------------CCceeCCCEEE
Confidence 99998 4 678975 578996 579999999765 4779983211 13589999999
Q ss_pred EEcccCccccCCccCCCceEEeccCCeecCCCCceecCcCCCCCCCCCcEEEccCCccccccCCCCCEEEEEccCCCeEE
Q psy833 221 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYIL 300 (642)
Q Consensus 221 ~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~~~~C~~p~~~~~g~~~~~~~~~~~~~~~~gs~~~~~C~~~Gy~l 300 (642)
|+|++||+|.|++. ++|+++ .|+ ..|.|+. .|+. +.+.||.+....+. +|++|+|+|+ +||.|
T Consensus 155 ysC~~GY~L~Gs~~-----i~C~~~-~Ws-~~P~C~~-~C~~-P~i~NG~~sg~~y~-------~Gd~Vtf~C~-~Gy~L 217 (317)
T PHA02954 155 INCDVGYEVIGASY-----ISCTAN-SWN-VIPSCQQ-KCDI-PSLSNGLISGSTFS-------IGGVIHLSCK-SGFTL 217 (317)
T ss_pred EEcCCCCEECcCCe-----eEECCC-cCC-CCCcccc-ccCC-CCCCCCeEcCCCcc-------cCCEEEEECC-CCCeE
Confidence 99999999999975 899988 598 6799987 6986 46789988765444 9999999999 99999
Q ss_pred eCCCceeeCCCCceEEecCCCCCCccCCCCCCCccCCC
Q psy833 301 INPRPITCVREPECKIIKPLGLASGRIPDSSINATSES 338 (642)
Q Consensus 301 ~G~~~~~C~~~P~C~~v~p~~~~~g~~~~~~~~~~~~~ 338 (642)
.|+..++|+. +.|++.+|.+....-.|+
T Consensus 218 ~Gs~~itC~~----------g~Ws~~~P~C~~~~~~~~ 245 (317)
T PHA02954 218 TGSPSSTCID----------GKWNPVLPICVRSNEEFD 245 (317)
T ss_pred CCCcceEECC----------CeEeCCCCceeCCCCccc
Confidence 9999999985 788888887654333333
No 8
>PHA02831 EEV host range protein; Provisional
Probab=99.78 E-value=1e-18 Score=174.31 Aligned_cols=150 Identities=21% Similarity=0.429 Sum_probs=117.1
Q ss_pred CCCCCeecCCCCCCcccCCCCcccCCCCCCCCCCCCCCCCceeeccCCCCCCCCCCCCCCCCCccceecCCCCeee----
Q psy833 65 VCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSF---- 140 (642)
Q Consensus 65 ~C~~G~y~~~g~~~C~~C~~G~y~~~~p~~g~~~C~~Cp~G~~~~~~~~~s~~~C~~~~~~p~nG~~~~~~~~~~~---- 140 (642)
.|.+||... -..|..|.|++. ..|. ....|+ .++.++||.+......|.+
T Consensus 49 ~C~~GY~~~-----~itC~dG~WS~~------P~C~--------------~~~~C~-~Pp~i~NG~i~~~~~~Y~~Gd~V 102 (268)
T PHA02831 49 KCNNNFDKV-----FVTCNNGSWSTK------NMCI--------------GKRNCK-DPVTILNGYIKNKKDQYSFGDSV 102 (268)
T ss_pred ECCCCCEee-----eEEeCCCccCCC------Cccc--------------ccccCc-CCCCCCCCEEeccCCceeCCCEE
Confidence 677888642 144678888743 2342 124677 4578899998865443433
Q ss_pred EEeCC----CCeeccCCcCCCCceEecccCCeeecCCCCccCCcCCCCCCCCCceeeecceeeeeeCCcCCCCccccccC
Q psy833 141 FFGCQ----DTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQ 216 (642)
Q Consensus 141 ~~~C~----~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C~~~~C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~g 216 (642)
+|+|+ +||.|.|.+ .++|. +|+|++..|+|+.+.|+.|. +.||.+... ...|.+|
T Consensus 103 tYsC~~g~~~GY~LvG~s-----~~tC~-dG~WS~~~P~C~~i~C~~P~-i~NG~i~~~--------------~~~y~~G 161 (268)
T PHA02831 103 TYACKVNKLEKYSIVGNE-----TVKCI-NKQWVPKYPVCKLIRCKYPA-LQNGFLNVF--------------EKKFYYG 161 (268)
T ss_pred EEECCCCCCCCeeEcCCc-----eeEeC-CCcCCCCCCeeeEeeCCCCC-CCCCccccC--------------CCceecC
Confidence 99999 699999999 99995 99999999999999998875 778872211 1458999
Q ss_pred cEEEEEcccCccccCCccCCCceEEeccCCeecCCCCceecCcCCCCCCC
Q psy833 217 SSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRP 266 (642)
Q Consensus 217 s~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~~~~C~~p~~~ 266 (642)
++|+|+|++||.|.|++. ++|+++|+|++..|.|++..|.++..+
T Consensus 162 ~~Vty~C~~GY~L~Gss~-----~tC~~nG~Wsp~~P~C~~~~~~~~~~~ 206 (268)
T PHA02831 162 DIVNFKCKKGFILLGSSV-----STCDINSIWYPGIPKCVKDKVHNEIQP 206 (268)
T ss_pred CEEEEEcCCCCEECCCcc-----EEECCCCeECCCCCCccCcccCCCCCc
Confidence 999999999999999975 899999999999999999888866543
No 9
>PHA02817 EEV Host range protein; Provisional
Probab=99.74 E-value=9.4e-18 Score=163.04 Aligned_cols=112 Identities=24% Similarity=0.496 Sum_probs=92.9
Q ss_pred CCccCCcCCCCCCCCCceeeecceeeeeeCCcCCCCccccccCcEEEEEcccC-----ccccCCccCCCceEEeccCCee
Q psy833 174 LRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDT-----FKLAGQTDKNDNVVRCQANGIW 248 (642)
Q Consensus 174 p~C~~~~C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~G-----y~l~G~~~~~~~~~~C~~~G~W 248 (642)
-.|+.+.|+.|+.+.||.+... ...|.+|++++|+|++| |+|.|++. ++|+++|+|
T Consensus 17 ~~C~~~~C~~PP~i~NG~i~~~--------------~~~Y~~Gd~Vty~C~~G~~~~gY~L~G~~~-----i~C~~dG~W 77 (225)
T PHA02817 17 SLCDLNKCCYPPSIKNGYIYNK--------------KTEYNIGSNVTFFCGNNTRGVRYTLVGEKN-----IICEKDGKW 77 (225)
T ss_pred CEecCcCCCCCCCCCCCEEecC--------------CCceeCCCEEEEEeCCCCCCCCEEECCCCe-----EEECCCCcC
Confidence 3588889999999999983211 14589999999999997 99999875 899999999
Q ss_pred cCCCCceecCcCCCCCCCCCcEEEcc-CCccccccCCCCCEEEEEccCCCeEEeCCCceeeCC
Q psy833 249 DFGDLRCEGPVCSDPGRPVDGYQVAT-SYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVR 310 (642)
Q Consensus 249 s~~~P~C~~~~C~~p~~~~~g~~~~~-~~~~~~~~~~~gs~~~~~C~~~Gy~l~G~~~~~C~~ 310 (642)
++..|.|+.+.|+.|. +.||.+... ....+. +|++|+|+|+ +||.|.|+..++|++
T Consensus 78 s~~~P~C~~v~C~~P~-i~NG~v~~~~~~~~y~----yg~~Vty~C~-~Gy~L~G~~~~tC~~ 134 (225)
T PHA02817 78 NKEFPVCKIIRCRFPA-LQNGFVNGIPDSKKFY----YESEVSFSCK-PGFVLIGTKYSVCGI 134 (225)
T ss_pred CCCCCeeeeeECCCCC-CcCceeEccccCCceE----cCCEEEEEcC-CCCEEcCCCceEECC
Confidence 9999999999999875 678988642 222222 9999999999 999999999988887
No 10
>PHA02817 EEV Host range protein; Provisional
Probab=99.72 E-value=2.8e-17 Score=159.76 Aligned_cols=119 Identities=22% Similarity=0.418 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCccceecCCCCeee----EEeCCCC-----eeccCCcCCCCceEecccCCeeecCCCCccCCcCCCCCC
Q psy833 116 RNFCRVPTPGAEYGNFLDTRYQSSF----FFGCQDT-----FKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGR 186 (642)
Q Consensus 116 ~~~C~~~~~~p~nG~~~~~~~~~~~----~~~C~~G-----y~l~g~~~~~~~~~~C~~~G~Ws~~~p~C~~~~C~~p~~ 186 (642)
...|. +++.++||.+......|.+ +|+|++| |.|.|.+ .++|+.+|+|+...|.|+++.|+.|.
T Consensus 21 ~~~C~-~PP~i~NG~i~~~~~~Y~~Gd~Vty~C~~G~~~~gY~L~G~~-----~i~C~~dG~Ws~~~P~C~~v~C~~P~- 93 (225)
T PHA02817 21 LNKCC-YPPSIKNGYIYNKKTEYNIGSNVTFFCGNNTRGVRYTLVGEK-----NIICEKDGKWNKEFPVCKIIRCRFPA- 93 (225)
T ss_pred CcCCC-CCCCCCCCEEecCCCceeCCCEEEEEeCCCCCCCCEEECCCC-----eEEECCCCcCCCCCCeeeeeECCCCC-
Confidence 46777 5578999998655444433 9999997 8999999 99999999999989999999999875
Q ss_pred CCCceeeecceeeeeeCCcCCCCccccccCcEEEEEcccCccccCCccCCCceEEeccCCeecCCCCceecC
Q psy833 187 PVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGP 258 (642)
Q Consensus 187 ~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~~~ 258 (642)
+.||.+... .....+.+|++++|+|++||.|.|++. ++|+++|+|++..|+|++.
T Consensus 94 i~NG~v~~~------------~~~~~y~yg~~Vty~C~~Gy~L~G~~~-----~tC~~~G~WSp~~P~C~~~ 148 (225)
T PHA02817 94 LQNGFVNGI------------PDSKKFYYESEVSFSCKPGFVLIGTKY-----SVCGINSSWIPKVPICSRD 148 (225)
T ss_pred CcCceeEcc------------ccCCceEcCCEEEEEcCCCCEEcCCCc-----eEECCCCeECCCCCEeecC
Confidence 678873211 011458899999999999999999975 8999999999999999964
No 11
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=99.52 E-value=9e-14 Score=115.42 Aligned_cols=80 Identities=39% Similarity=0.618 Sum_probs=64.2
Q ss_pred cCCCCCeeecCCCCceEEEeCCC-CeeeEEEcCCceecCCCceeEEEEccCCCCCCceeecceEEEEEEEeCCCCEEEEE
Q psy833 489 VDNEPPVFQNCPQQPIIVRKGPN-GIEPVNITEPVAVDNSGSIARLEIKPQSFKTPMITFHDMAVKYIAYDFDGNVAICE 567 (642)
Q Consensus 489 ~d~~pP~~~~CP~~~i~~~~~~~-~~~~v~~~~p~~~dnsg~~~~~~~~~~~~~~~~~~~G~~~Vtyta~D~~Gn~a~C~ 567 (642)
+|.+||.| +||.+ +......+ ..+.|+|.+|++.||+|....+.... .....+.+|.+.|+|+|+|.+||+++|+
T Consensus 1 vD~~pP~i-~CP~~-i~~~~~~~~~~~~v~w~~p~~~Dn~~~~~~~~~~~--~~g~~f~~G~t~V~ytA~D~~GN~a~C~ 76 (81)
T PF02494_consen 1 VDTTPPVI-TCPDD-ITVTVEPGQSTASVSWTEPTATDNSGSIVSITCNH--PPGDLFPVGTTTVTYTATDAAGNSATCS 76 (81)
T ss_pred CCCCCCEE-ECCCC-cEEEecCCCceEEEEecCCEEEecCCceEeeeccC--CCCceEeeceEEEEEEEEECCCCEEEEE
Confidence 58899999 99999 77777777 48889999999999999555544331 1112234499999999999999999999
Q ss_pred EEEEE
Q psy833 568 INITV 572 (642)
Q Consensus 568 f~v~v 572 (642)
|.|+|
T Consensus 77 f~V~V 81 (81)
T PF02494_consen 77 FTVTV 81 (81)
T ss_pred EEEEC
Confidence 99986
No 12
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=99.25 E-value=1.8e-11 Score=101.64 Aligned_cols=65 Identities=31% Similarity=0.550 Sum_probs=60.0
Q ss_pred ecCCCCeEeCCCCcEEEccCCCceeEEEecCCCcceeeecCCC-CeEEEeCCCCccc-cCCCceEEEEEEeC
Q psy833 573 VDETPPLLSCPQSYIIELVDKQDSYVMNFNETRRRVNVSDASG-EVTVTFSPDRATI-LLGDFENVTVTAAD 642 (642)
Q Consensus 573 ~d~~pP~i~Cp~~~~i~~~~~~~~~~v~w~~p~~~~~~~Dnsg-~~~v~~~~~~g~~-~~G~~~~v~~tatD 642 (642)
.|.+||+|.||+++.+.+..++..+.|+|.+| +++||+| .+.+..++.+|++ ++|.| .|+|+|+|
T Consensus 1 vD~~pP~i~CP~~i~~~~~~~~~~~~v~w~~p----~~~Dn~~~~~~~~~~~~~g~~f~~G~t-~V~ytA~D 67 (81)
T PF02494_consen 1 VDTTPPVITCPDDITVTVEPGQSTASVSWTEP----TATDNSGSIVSITCNHPPGDLFPVGTT-TVTYTATD 67 (81)
T ss_pred CCCCCCEEECCCCcEEEecCCCceEEEEecCC----EEEecCCceEeeeccCCCCceEeeceE-EEEEEEEE
Confidence 38999999999998888888888899999999 9999999 7788889999987 99999 99999998
No 13
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=98.83 E-value=2.7e-09 Score=78.77 Aligned_cols=48 Identities=40% Similarity=0.992 Sum_probs=44.8
Q ss_pred CeeecCCCCCcccCCCCceecCCCCCCceeCCCCceecCCCCcccccc
Q psy833 15 GTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQEC 62 (642)
Q Consensus 15 G~~~~~~~~~C~~Cp~G~y~~~~~~~~C~~Cp~g~~~~~~gs~~~~~C 62 (642)
|+|++.+...|++||.|+|+++.++..|++||+|+++...|+++..+|
T Consensus 1 G~y~~~~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~s~~~C 48 (48)
T PF07699_consen 1 GTYSDSGNNKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGSTSISDC 48 (48)
T ss_pred CeeCCCCCCccCCCCCCccCCccCCccCccCcCCCccCCcCCcChhhC
Confidence 789888889999999999999999999999999999999999988766
No 14
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=98.73 E-value=1.9e-08 Score=77.04 Aligned_cols=57 Identities=26% Similarity=0.619 Sum_probs=47.2
Q ss_pred CCCCCCCCCceeeecceeeeeeCCcCCCCccccccCcEEEEEcccCccccCCccCCCceEEeccCCeecCCCCcee
Q psy833 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCE 256 (642)
Q Consensus 181 C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~ 256 (642)
|+.|+.+.||.+... ...|.+|++++|.|++||+|.|.. .++|+.+|+|++..|.|+
T Consensus 1 C~~p~~~~~g~~~~~--------------~~~~~~g~~~~~~C~~Gy~~~g~~-----~~~C~~~g~W~~~~p~C~ 57 (57)
T cd00033 1 CPPPPVPENGTVTGS--------------KGSYSYGSTVTYSCNEGYTLVGSS-----TITCTENGGWSPPPPTCE 57 (57)
T ss_pred CcCCCCCCCcEEecC--------------CCcccCCCEEEEECCCCCeEeCCC-----eeEECCCCeECCCCcccC
Confidence 777888889983321 145899999999999999999975 489999999999988884
No 15
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=98.70 E-value=1.3e-08 Score=77.69 Aligned_cols=56 Identities=29% Similarity=0.618 Sum_probs=45.8
Q ss_pred CCCCCCCCCceeeecceeeeeeCCcCCCCccccccCcEEEEEcccCccccCCccCCCceEEeccCCeecCCCCce
Q psy833 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRC 255 (642)
Q Consensus 181 C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C 255 (642)
|+.|+.+.||.+... . ..+.+|++|.|+|+.||+|.|.. .++|+.+|+|++..|.|
T Consensus 1 C~~P~~~~~~~~~~~------------~--~~~~~g~~~~~~C~~Gy~~~g~~-----~~~C~~~g~W~~~~p~C 56 (56)
T PF00084_consen 1 CPPPPPIPNGSISCT------------N--NPYSYGSTVTFSCNPGYELSGSS-----TITCQSNGQWSPPPPTC 56 (56)
T ss_dssp EESESCBTTEEEESS------------S--SSEETTEEEEEEESTTEEEESSS-----EEEEETTSEESSTTSEE
T ss_pred CcCCCCCCCcEEecC------------C--CCccCCCEEEEcCCCCCEecCCC-----EEEECCCCEECCCCCCC
Confidence 566777888862221 1 45899999999999999999995 49999999999988887
No 16
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=98.68 E-value=3.3e-08 Score=75.49 Aligned_cols=57 Identities=19% Similarity=0.489 Sum_probs=46.4
Q ss_pred CCCCCCCCCceeeecceeeeeeCCcCCCCccccccCcEEEEEcccCccccCCccCCCceEEeccCCeecCCCCce
Q psy833 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRC 255 (642)
Q Consensus 181 C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C 255 (642)
|+.|+.+.||.+... ....|.+|+++.|.|++||.|.|... ++|+.+|+|+...|.|
T Consensus 1 C~~p~~~~~g~~~~~-------------~~~~~~~g~~~~~~C~~Gy~l~g~~~-----~~C~~~g~Ws~~~p~C 57 (57)
T smart00032 1 CPPPPDIENGTITSS-------------NKGTYSVGDTVTYSCNPGYTLIGSST-----ITCLEDGTWSPPAPTC 57 (57)
T ss_pred CcCCCCCCCCEEecC-------------CCCeecCCCEEEEEcCCCCEEcCCCe-----eEECCCCEECCCCCcC
Confidence 677778889983321 01358999999999999999999864 8999999999888877
No 17
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=98.29 E-value=9.9e-07 Score=67.35 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=41.7
Q ss_pred CCCCCCccceecCCCCee----eEEeCCCCeeccCCcCCCCceEecccCCeeecCCCCcc
Q psy833 122 PTPGAEYGNFLDTRYQSS----FFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCE 177 (642)
Q Consensus 122 ~~~~p~nG~~~~~~~~~~----~~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C~ 177 (642)
.++.+.||.+......+. ..|.|++||.|.|.. .++|+.+|+|+...|.|+
T Consensus 3 ~p~~~~~g~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~-----~~~C~~~g~W~~~~p~C~ 57 (57)
T cd00033 3 PPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSS-----TITCTENGGWSPPPPTCE 57 (57)
T ss_pred CCCCCCCcEEecCCCcccCCCEEEEECCCCCeEeCCC-----eeEECCCCeECCCCcccC
Confidence 445677999887533333 399999999999998 999999999999988885
No 18
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=98.26 E-value=1.4e-06 Score=66.40 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=41.0
Q ss_pred CCCCCCccceecCC-CCee----eEEeCCCCeeccCCcCCCCceEecccCCeeecCCCCc
Q psy833 122 PTPGAEYGNFLDTR-YQSS----FFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRC 176 (642)
Q Consensus 122 ~~~~p~nG~~~~~~-~~~~----~~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C 176 (642)
.++.+.||.+.... ..+. ..|.|++||.|.|.. .++|+.+|+|+...|.|
T Consensus 3 ~p~~~~~g~~~~~~~~~~~~g~~~~~~C~~Gy~l~g~~-----~~~C~~~g~Ws~~~p~C 57 (57)
T smart00032 3 PPPDIENGTITSSNKGTYSVGDTVTYSCNPGYTLIGSS-----TITCLEDGTWSPPAPTC 57 (57)
T ss_pred CCCCCCCCEEecCCCCeecCCCEEEEEcCCCCEEcCCC-----eeEECCCCEECCCCCcC
Confidence 34568899888764 2333 299999999999999 99999999999988887
No 19
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=98.20 E-value=1.1e-06 Score=67.04 Aligned_cols=49 Identities=29% Similarity=0.632 Sum_probs=40.4
Q ss_pred CCCCCccceecCCCCeee----EEeCCCCeeccCCcCCCCceEecccCCeeecCCCCc
Q psy833 123 TPGAEYGNFLDTRYQSSF----FFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRC 176 (642)
Q Consensus 123 ~~~p~nG~~~~~~~~~~~----~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C 176 (642)
++.+.||.+......+.+ .|+|+.||++.|.. .++|+.+|+|+...|+|
T Consensus 4 P~~~~~~~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~-----~~~C~~~g~W~~~~p~C 56 (56)
T PF00084_consen 4 PPPIPNGSISCTNNPYSYGSTVTFSCNPGYELSGSS-----TITCQSNGQWSPPPPTC 56 (56)
T ss_dssp ESCBTTEEEESSSSSEETTEEEEEEESTTEEEESSS-----EEEEETTSEESSTTSEE
T ss_pred CCCCCCcEEecCCCCccCCCEEEEcCCCCCEecCCC-----EEEECCCCEECCCCCCC
Confidence 455788877765444433 99999999999999 99999999999988877
No 20
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=98.09 E-value=3.2e-06 Score=62.32 Aligned_cols=48 Identities=33% Similarity=0.760 Sum_probs=41.4
Q ss_pred CeecCCCCCCcccCCCCcccCCCCCCCCCCCCCCCCceeeccCCCCCCCCC
Q psy833 69 GTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFC 119 (642)
Q Consensus 69 G~y~~~g~~~C~~C~~G~y~~~~p~~g~~~C~~Cp~G~~~~~~~~~s~~~C 119 (642)
|+|.+.+...|.+||.|+|++. .+...|..||.|+++...++++...|
T Consensus 1 G~y~~~~~~~C~~Cp~GtYq~~---~g~~~C~~Cp~g~~T~~~Gs~s~~~C 48 (48)
T PF07699_consen 1 GTYSDSGNNKCQPCPKGTYQDE---EGQTSCTPCPPGSTTSSEGSTSISDC 48 (48)
T ss_pred CeeCCCCCCccCCCCCCccCCc---cCCccCccCcCCCccCCcCCcChhhC
Confidence 7888888889999999999976 58889999999999999988876665
No 21
>KOG0196|consensus
Probab=97.85 E-value=1.3e-05 Score=89.28 Aligned_cols=65 Identities=31% Similarity=0.734 Sum_probs=55.5
Q ss_pred CCCCccCCCCeeecCCCCCcccCCCCceecCCCCCCceeCCCCceecCCCCccccccccCCCCCeecCCCC
Q psy833 6 VPRCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGL 76 (642)
Q Consensus 6 ~~~C~~C~~G~~~~~~~~~C~~Cp~G~y~~~~~~~~C~~Cp~g~~~~~~gs~~~~~C~~~C~~G~y~~~g~ 76 (642)
-++|. |.+||-.......|+.||.|+|....+...|.+||++.++...|+++|. |..|||.....
T Consensus 258 iG~C~-C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~-----C~~gyyRA~~D 322 (996)
T KOG0196|consen 258 IGGCV-CKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCT-----CENGYYRADSD 322 (996)
T ss_pred cCcee-ecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccc-----ccCCcccCCCC
Confidence 35677 9999988667899999999999999889999999999999888887765 99999987643
No 22
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=97.66 E-value=0.00012 Score=62.86 Aligned_cols=60 Identities=32% Similarity=0.683 Sum_probs=34.3
Q ss_pred CCCCeeecCCCCCcccCCCCceecCC----CCCCceeCCCCceecCCCC-ccccccccCCCCCeec
Q psy833 12 CPAGTFAGINQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREEGS-KAVQECVPVCGYGTYS 72 (642)
Q Consensus 12 C~~G~~~~~~~~~C~~Cp~G~y~~~~----~~~~C~~Cp~g~~~~~~gs-~~~~~C~~~C~~G~y~ 72 (642)
|+.|.|...+..-|..||+|+|.... ....|.+|++|+|+..... ..|..|. .|..|.+.
T Consensus 1 c~~~~y~~~~~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~~~~C~~c~-~C~~g~~~ 65 (98)
T cd00185 1 CREGEYYYTGGLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNHLPKCLSCR-TCDSGLVE 65 (98)
T ss_pred CCCcceEcCCCCCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCCCCcCCcCc-cCCCCCEE
Confidence 55666664444566677777776542 2456777777777655432 3344443 46655543
No 23
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=97.39 E-value=0.00033 Score=60.15 Aligned_cols=74 Identities=28% Similarity=0.650 Sum_probs=45.5
Q ss_pred CCCCccCCCCeeecCC-----CCCcccCCCCceecCCCC-CCc---eeCCCCceecCCC-CccccccccCCCCCeecCCC
Q psy833 6 VPRCLHCPAGTFAGIN-----QKTCTPCPRGFYQNNDRQ-GVC---LKCPMGTYTREEG-SKAVQECVPVCGYGTYSPTG 75 (642)
Q Consensus 6 ~~~C~~C~~G~~~~~~-----~~~C~~Cp~G~y~~~~~~-~~C---~~Cp~g~~~~~~g-s~~~~~C~~~C~~G~y~~~g 75 (642)
+.-|..|++|++.... ...|.+||.|+|++.... ..| ..|..|......+ +++-..|. |++|||....
T Consensus 11 ~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~~~~C~~c~~C~~g~~~~~~ct~t~dt~C~--C~~G~y~~~~ 88 (98)
T cd00185 11 GLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNHLPKCLSCRTCDSGLVEKAPCTATRNTVCG--CKPGFYCLTK 88 (98)
T ss_pred CCCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCCCCcCCcCccCCCCCEEEccCCCCCCCeEe--CCCCCEecCC
Confidence 3567899999987642 367888999999886443 344 4556666554332 22334564 7777777553
Q ss_pred CCCcccC
Q psy833 76 LVPCLEC 82 (642)
Q Consensus 76 ~~~C~~C 82 (642)
. .|..|
T Consensus 89 ~-~c~~C 94 (98)
T cd00185 89 A-SCEMC 94 (98)
T ss_pred C-CCCcc
Confidence 1 34444
No 24
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=97.13 E-value=0.0057 Score=71.41 Aligned_cols=101 Identities=24% Similarity=0.525 Sum_probs=58.8
Q ss_pred CCCCccCCCCeeecCC------------------CCCcccCCCCceecCC----------------CCCCceeCCCCcee
Q psy833 6 VPRCLHCPAGTFAGIN------------------QKTCTPCPRGFYQNND----------------RQGVCLKCPMGTYT 51 (642)
Q Consensus 6 ~~~C~~C~~G~~~~~~------------------~~~C~~Cp~G~y~~~~----------------~~~~C~~Cp~g~~~ 51 (642)
+..|..|..|+|...+ ...|+.|-.|||.... +...|+.|+.|+|.
T Consensus 524 ~g~Ct~C~~gyfL~~GGCY~~~~~PG~~~C~~a~~g~Ct~C~~GYyl~~~~~C~~Cd~~C~~C~~~~~~~C~sC~~g~yL 603 (800)
T PTZ00214 524 NGACTTCSGAAFLMNGGCYTTEHYPGSTICDKQSNGKCTTTKKGYGISPDGKLLECDPTCLACTAPGPGRCTRCPSDKLL 603 (800)
T ss_pred CCcccCCCCCcEecCCceeccCcCCCCCccccCCCCcccccccCcccCCCCccccccchhhhccCCCCCcceECCCCCEe
Confidence 5667788877776422 2567777777775421 23467777777776
Q ss_pred cCCCCccccccc--cCCCCCeecCCCCCCcccCC-CCcccCCCCCCCCCCCCCCCCceeeccCC
Q psy833 52 REEGSKAVQECV--PVCGYGTYSPTGLVPCLECP-RNSYTGEPPVGGHKDCEACPANMFTYQPA 112 (642)
Q Consensus 52 ~~~gs~~~~~C~--~~C~~G~y~~~g~~~C~~C~-~G~y~~~~p~~g~~~C~~Cp~G~~~~~~~ 112 (642)
..........|. ..|..|||... ..|.+|. .+--.-. ....|..|..++|....+
T Consensus 604 ~~~~~~~~g~Cv~~~~C~~GYY~d~--~~C~~C~~~~C~tC~----~~~~C~~C~~~~~ls~~~ 661 (800)
T PTZ00214 604 KRASGAATGSCVDPGACVDGYYADG--DACLPCATPGCKTCG----HASFCTECAGELFVSLDG 661 (800)
T ss_pred ccccccccccccCcccCCCCcccCC--CccccCCcccccccc----CCCCcCcCCCCceecCcC
Confidence 432111222343 26888888764 3577776 3433322 334688888887754443
No 25
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=96.72 E-value=0.016 Score=62.64 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=19.5
Q ss_pred EEEcccCccccCCccCCCceEEecc---CCeecCCCCceecCcCCCC
Q psy833 220 FFGCQDTFKLAGQTDKNDNVVRCQA---NGIWDFGDLRCEGPVCSDP 263 (642)
Q Consensus 220 ~~~C~~Gy~l~G~~~~~~~~~~C~~---~G~Ws~~~P~C~~~~C~~p 263 (642)
-..|..||.+.+..- +.|.. +..|.+ .+.|.. |.+|
T Consensus 303 Ct~C~~Gyy~~~~~c-----~~C~~c~~~~~v~G-v~~C~~--C~~p 341 (397)
T PF03302_consen 303 CTACADGYYKSGSGC-----VKCTSCSSNNGVTG-VKGCVS--CAPP 341 (397)
T ss_pred ccchhccccccccCC-----ccccccCCCCcCcC-CCcCcc--cCCC
Confidence 357888887766542 45543 223553 345643 5554
No 26
>KOG0196|consensus
Probab=96.70 E-value=0.0028 Score=71.40 Aligned_cols=62 Identities=27% Similarity=0.546 Sum_probs=38.2
Q ss_pred CCCCeecCC-CCCCcccCCCCcccCCCCCCCCCCCCCCCCceeeccCCCCCCCCCCCCCCCCCcccee
Q psy833 66 CGYGTYSPT-GLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFL 132 (642)
Q Consensus 66 C~~G~y~~~-g~~~C~~C~~G~y~~~~p~~g~~~C~~Cp~G~~~~~~~~~s~~~C~~~~~~p~nG~~~ 132 (642)
|++|+|... |...|.+||...+... .++..|. |..|||-... -.....|.-|+.+|.|=...
T Consensus 279 Cp~G~yK~~~~~~~C~~CP~~S~s~~---ega~~C~-C~~gyyRA~~-Dp~~mpCT~PPSaP~nlis~ 341 (996)
T KOG0196|consen 279 CPPGTYKASQGDSLCLPCPPNSHSSS---EGATSCT-CENGYYRADS-DPPSMPCTRPPSAPRNLISN 341 (996)
T ss_pred CCCCcccCCCCCCCCCCCCCCCCCCC---CCCCccc-ccCCcccCCC-CCCCCCCCCCCCccceeeee
Confidence 333333333 3466788888877754 3778888 8888874332 22356787777777664444
No 27
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=96.49 E-value=0.0011 Score=50.15 Aligned_cols=44 Identities=39% Similarity=0.878 Sum_probs=24.2
Q ss_pred CCCc-cCCCCeeecC--CC----CCcccCCCCceecCCCCCCceeCCCCce
Q psy833 7 PRCL-HCPAGTFAGI--NQ----KTCTPCPRGFYQNNDRQGVCLKCPMGTY 50 (642)
Q Consensus 7 ~~C~-~C~~G~~~~~--~~----~~C~~Cp~G~y~~~~~~~~C~~Cp~g~~ 50 (642)
+.|. .|++|++... +. ..|+.|+.|+|.+..+...|+.||.|+|
T Consensus 3 S~CS~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~~~~~C~~C~~~~w 53 (54)
T PF07562_consen 3 SVCSEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQTDSTSCTKCPEGQW 53 (54)
T ss_dssp --SS----TTTEEEE--SSS-S--EEEE--TTEEEE--ETTEEEE--TTEE
T ss_pred cccCCCCCCCCEECccCCCcceEEEeecCCCCcEECCCCccccccCCCccC
Confidence 4676 8888988753 33 3467888888888777888888888876
No 28
>KOG4260|consensus
Probab=96.32 E-value=0.0041 Score=61.15 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=52.8
Q ss_pred CCCCCeecCC---CCCCcccCCCCcc-cCCCCCCCCCCCCCCCCceeeccCCCCCCCCCCCCCCCCCccceecCCCCeee
Q psy833 65 VCGYGTYSPT---GLVPCLECPRNSY-TGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSF 140 (642)
Q Consensus 65 ~C~~G~y~~~---g~~~C~~C~~G~y-~~~~p~~g~~~C~~Cp~G~~~~~~~~~s~~~C~~~~~~p~nG~~~~~~~~~~~ 140 (642)
.|..|||... ....|.+|..+.- ..+ ..+...|..|..|+.....++.+...|.. -++|-.....+.+..-+|
T Consensus 183 ~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Cs--g~~~k~C~kCkkGW~lde~gCvDvnEC~~-ep~~c~~~qfCvNteGSf 259 (350)
T KOG4260|consen 183 YCGIEYFESSRNEQHLVCTACHEGCLGVCS--GESSKGCSKCKKGWKLDEEGCVDVNECQN-EPAPCKAHQFCVNTEGSF 259 (350)
T ss_pred ccchHHHHhhcccccchhhhhhhhhhcccC--CCCCCChhhhcccceecccccccHHHHhc-CCCCCChhheeecCCCce
Confidence 5666776543 2245777776543 111 13678899999999988888888888873 344544444454444444
Q ss_pred EEeCCCCeec
Q psy833 141 FFGCQDTFKL 150 (642)
Q Consensus 141 ~~~C~~Gy~l 150 (642)
...+.+||.-
T Consensus 260 ~C~dk~Gy~~ 269 (350)
T KOG4260|consen 260 KCEDKEGYKK 269 (350)
T ss_pred EecccccccC
Confidence 5666678875
No 29
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=96.32 E-value=0.0054 Score=53.89 Aligned_cols=25 Identities=36% Similarity=0.847 Sum_probs=12.2
Q ss_pred cCCCCceecCCCCCCceeCCCCceecC
Q psy833 27 PCPRGFYQNNDRQGVCLKCPMGTYTRE 53 (642)
Q Consensus 27 ~Cp~G~y~~~~~~~~C~~Cp~g~~~~~ 53 (642)
.|..|.|... +.-|..||+|++...
T Consensus 31 ~C~e~EY~~~--~~CC~kCPPGt~v~~ 55 (127)
T PHA02637 31 KCKDNEYKRH--NLCCLSCPPGTYASR 55 (127)
T ss_pred CCCCCcCcCC--CeEcCCCCCCCEEeC
Confidence 3555555322 234555566555544
No 30
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=94.74 E-value=0.12 Score=60.53 Aligned_cols=14 Identities=14% Similarity=0.085 Sum_probs=8.9
Q ss_pred EEeCCCCeeccCCc
Q psy833 141 FFGCQDTFKLAGQT 154 (642)
Q Consensus 141 ~~~C~~Gy~l~g~~ 154 (642)
...|..||.|.+..
T Consensus 752 vC~C~~g~~l~~~~ 765 (800)
T PTZ00214 752 VCMCELDAVLTKGV 765 (800)
T ss_pred eEEeCCcceecCCe
Confidence 45677777665554
No 31
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=94.10 E-value=0.075 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.780 Sum_probs=11.0
Q ss_pred cCCCCeeecCCCCCcccCCCCceec
Q psy833 11 HCPAGTFAGINQKTCTPCPRGFYQN 35 (642)
Q Consensus 11 ~C~~G~~~~~~~~~C~~Cp~G~y~~ 35 (642)
.|..|.|.. ++.-|..||+|+|..
T Consensus 31 ~C~e~EY~~-~~~CC~kCPPGt~v~ 54 (127)
T PHA02637 31 KCKDNEYKR-HNLCCLSCPPGTYAS 54 (127)
T ss_pred CCCCCcCcC-CCeEcCCCCCCCEEe
Confidence 445555522 223344555555553
No 32
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=93.34 E-value=0.02 Score=43.26 Aligned_cols=25 Identities=24% Similarity=0.862 Sum_probs=8.7
Q ss_pred cccCCCCcccCCCCCCCCCCCCCCCCce
Q psy833 79 CLECPRNSYTGEPPVGGHKDCEACPANM 106 (642)
Q Consensus 79 C~~C~~G~y~~~~p~~g~~~C~~Cp~G~ 106 (642)
|.+|+.|+|.+. .+...|..|+.|+
T Consensus 28 C~~C~~~~is~~---~~~~~C~~C~~~~ 52 (54)
T PF07562_consen 28 CVPCPEGEISNQ---TDSTSCTKCPEGQ 52 (54)
T ss_dssp EEE--TTEEEE-----ETTEEEE--TTE
T ss_pred eecCCCCcEECC---CCccccccCCCcc
Confidence 344444444432 1344454454444
No 33
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=93.30 E-value=0.59 Score=43.78 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=39.8
Q ss_pred cceEEEE-EEEeCCCCEEEEEEE--EEEecCCCCeEeCCCCcEEEccCCCceeEEEecCCCcceeeecCCCC
Q psy833 548 HDMAVKY-IAYDFDGNVAICEIN--ITVVDETPPLLSCPQSYIIELVDKQDSYVMNFNETRRRVNVSDASGE 616 (642)
Q Consensus 548 G~~~Vty-ta~D~~Gn~a~C~f~--v~v~d~~pP~i~Cp~~~~i~~~~~~~~~~v~w~~p~~~~~~~Dnsg~ 616 (642)
|.+.++. +|.|.+||.++=.+. +. .|.+||+|+=..+..+ .....|...+. +.+.++|+...
T Consensus 15 G~Y~l~~~~a~D~agN~~~~~~~~~~~-iD~T~Ptisi~~~~~~-----~~g~~v~~~~~-i~i~~tD~~~~ 79 (158)
T PF13750_consen 15 GSYTLTVVTATDAAGNTSTSTVSETFT-IDNTPPTISISDGASV-----ANGSTVYGLVN-ISINVTDNSDD 79 (158)
T ss_pred ccEEEEEEEEEecCCCEEEEEEeeEEE-EcCCCCEEEEecCCcc-----CCCccccceee-eEEEEEeCCCC
Confidence 8999999 899999998765554 54 4999998853111111 12334444444 45667777664
No 34
>KOG0994|consensus
Probab=92.58 E-value=0.38 Score=56.45 Aligned_cols=175 Identities=22% Similarity=0.458 Sum_probs=90.3
Q ss_pred CCCcccCCCCceecCCCCCCceeCCCCceecCCC--CccccccccCCCCCeecCCCCCCcccCCCCcccCCCCCCCCCCC
Q psy833 22 QKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEG--SKAVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDC 99 (642)
Q Consensus 22 ~~~C~~Cp~G~y~~~~~~~~C~~Cp~g~~~~~~g--s~~~~~C~~~C~~G~y~~~g~~~C~~C~~G~y~~~~p~~g~~~C 99 (642)
+-+|-.|-.|||.-. .+-|.+|.-........ ..-...| .|.+|.|. ..|..|..|+|.-+ .|
T Consensus 792 GR~CdqCApGtyGFG--PsGCk~CdC~~~Gs~~~~Cd~~tGQC--~C~~g~yg----rqCnqCqpG~WgFP-------eC 856 (1758)
T KOG0994|consen 792 GRRCDQCAPGTYGFG--PSGCKACDCNSIGSLDKYCDKITGQC--QCRPGTYG----RQCNQCQPGYWGFP-------EC 856 (1758)
T ss_pred cccccccCCcccCcC--CccCccccccccccccccccccccce--eeccccch----hhccccCCCccCCC-------cC
Confidence 457778888888754 45577776443221110 0000134 58888886 46888888888643 56
Q ss_pred CCCCCceeeccCCCCCCCCCCCCCCCCCccceecCCCCe-eeEEeCCCCeeccCCcCCCCceEecccCCeeecCCCCccC
Q psy833 100 EACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQS-SFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEG 178 (642)
Q Consensus 100 ~~Cp~G~~~~~~~~~s~~~C~~~~~~p~nG~~~~~~~~~-~~~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C~~ 178 (642)
.+|.-.-. ...|. + ....-+.|-+... .+.-.|..||+ |.. .+ +....|++
T Consensus 857 r~CqCNgH--------A~~Cd-~---~tGaCi~CqD~T~G~~CdrCl~Gyy--GdP-----~l---------g~g~~CrP 908 (1758)
T KOG0994|consen 857 RPCQCNGH--------ADTCD-P---ITGACIDCQDSTTGHSCDRCLDGYY--GDP-----RL---------GSGIGCRP 908 (1758)
T ss_pred ccccccCc--------ccccC-c---cccccccccccccccchhhhhcccc--CCc-----cc---------CCCCCCCC
Confidence 66654211 22333 1 1111122222111 12567889998 443 11 12245776
Q ss_pred CcCCCCCCCCCceeeecceeeeeeCCcCCCCccccccCcEEEEEcccCccccCCccCCCceEEeccCCeecCC--CCcee
Q psy833 179 PVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFG--DLRCE 256 (642)
Q Consensus 179 ~~C~~p~~~~~g~~~~~~~~~C~~~~~~~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~--~P~C~ 256 (642)
|+=|..+..|.... ..|..+ .+...+.-.|++||. |+.= -.| ++|.|-.+ --+|+
T Consensus 909 --CpCP~gp~Sg~~~A---~sC~~d----------~~t~~ivC~C~~GY~--G~RC-----e~C-A~~~fGnP~~GGtCq 965 (1758)
T KOG0994|consen 909 --CPCPDGPASGRQHA---DSCYLD----------TRTQQIVCHCQEGYS--GSRC-----EIC-ADNHFGNPSEGGTCQ 965 (1758)
T ss_pred --CCCCCCCccchhcc---cccccc----------ccccceeeecccCcc--ccch-----hhh-cccccCCcccCCccc
Confidence 44455555554222 345532 344567778999995 5421 133 56777543 23677
Q ss_pred cCcCCC
Q psy833 257 GPVCSD 262 (642)
Q Consensus 257 ~~~C~~ 262 (642)
+-.|..
T Consensus 966 ~CeC~~ 971 (1758)
T KOG0994|consen 966 KCECSN 971 (1758)
T ss_pred cccccC
Confidence 655653
No 35
>KOG4260|consensus
Probab=91.57 E-value=0.14 Score=50.62 Aligned_cols=23 Identities=43% Similarity=0.983 Sum_probs=15.0
Q ss_pred CCCCceecCCCCCCceeCCCCceecCCC
Q psy833 28 CPRGFYQNNDRQGVCLKCPMGTYTREEG 55 (642)
Q Consensus 28 Cp~G~y~~~~~~~~C~~Cp~g~~~~~~g 55 (642)
||+|+|... |++||.|+.+.-.|
T Consensus 132 Cp~gtyGpd-----Cl~Cpggser~C~G 154 (350)
T KOG4260|consen 132 CPDGTYGPD-----CLQCPGGSERPCFG 154 (350)
T ss_pred cCCCCcCCc-----cccCCCCCcCCcCC
Confidence 677777766 77777766555333
No 36
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=91.40 E-value=0.68 Score=50.22 Aligned_cols=92 Identities=23% Similarity=0.596 Sum_probs=47.9
Q ss_pred CCccCCCCeeecCCCCCcc----cCCCCceecCC--CCCCceeCCCCceecCCCCccccccccCCCCCeecCCCCCCccc
Q psy833 8 RCLHCPAGTFAGINQKTCT----PCPRGFYQNND--RQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLE 81 (642)
Q Consensus 8 ~C~~C~~G~~~~~~~~~C~----~Cp~G~y~~~~--~~~~C~~Cp~g~~~~~~gs~~~~~C~~~C~~G~y~~~g~~~C~~ 81 (642)
.|+.|..++|... ...|. .| .++|.... ....|..|..+......+.. -|. .|+.|||.... .|.+
T Consensus 38 ~Ct~C~~~~~lt~-t~~Ci~~C~~c-~~~~~~t~~~~~~~C~~C~~~~~~~~~~~~---~c~-~C~~G~y~~~~--~C~~ 109 (397)
T PF03302_consen 38 VCTECNSGYYLTP-TNQCIEDCAKC-SNYYCSTCGNDKKTCKKCSIGNCLTCSGDA---CCS-ECPDGYYKNGN--KCVP 109 (397)
T ss_pred ccCcCCCCCcCCC-CCccccCcccc-ccccccccccccccccccccccccccccCc---ccc-CCCCCccccCC--CCCC
Confidence 5666666666543 23332 23 33443321 23457777655433222221 222 67788887543 5777
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCceeec
Q psy833 82 CPRNSYTGEPPVGGHKDCEACPANMFTY 109 (642)
Q Consensus 82 C~~G~y~~~~p~~g~~~C~~Cp~G~~~~ 109 (642)
|.++-..-.. .....|..|+.|+...
T Consensus 110 C~~~C~~C~~--~~~~~Ct~C~~g~~L~ 135 (397)
T PF03302_consen 110 CHESCATCSG--GAPNQCTSCKPGKVLK 135 (397)
T ss_pred CCccccccCC--CCCCCCcccCCCcccc
Confidence 7765544432 2356687787776543
No 37
>KOG4289|consensus
Probab=90.71 E-value=0.33 Score=58.10 Aligned_cols=159 Identities=20% Similarity=0.385 Sum_probs=80.4
Q ss_pred cccccccCCCCCeecCC-CCCCcccCCCCcccCCCCCCCCCCCCCCCCcee-eccCCCCCCCCCCCCCCCCCccceecCC
Q psy833 58 AVQECVPVCGYGTYSPT-GLVPCLECPRNSYTGEPPVGGHKDCEACPANMF-TYQPAAPARNFCRVPTPGAEYGNFLDTR 135 (642)
Q Consensus 58 ~~~~C~~~C~~G~y~~~-g~~~C~~C~~G~y~~~~p~~g~~~C~~Cp~G~~-~~~~~~~s~~~C~~~~~~p~nG~~~~~~ 135 (642)
...+|. |++||+.+. ....=++||.|.|-.+ .|.+|..... .+ ...|.. .||...|.+
T Consensus 1737 ~GY~C~--C~~g~~G~~Ce~~~dq~CPrGWWG~P-------~CgpC~CavsKgf------dp~CnK-----t~G~CqCKe 1796 (2531)
T KOG4289|consen 1737 HGYTCE--CPPGYTGPYCELRADQPCPRGWWGFP-------TCGPCNCAVSKGF------DPDCNK-----TNGQCQCKE 1796 (2531)
T ss_pred CceeEE--CCCcccCcchhhhccCCCCCcccCCC-------CccCccccccCCC------CCCccc-----cCcceeecc
Confidence 556775 899888754 2222378999988633 5665543211 11 233431 234444432
Q ss_pred CCeee---EEeCCCCeeccCCcCCCCceEecccCCeeecC----CCCccCCcCCCCCC--CCCceeeecceeeeeeCCcC
Q psy833 136 YQSSF---FFGCQDTFKLAGQTDKNDNVVRCQANGIWDFG----DLRCEGPVCSDPGR--PVDGYQVATSYEQVRYDDEQ 206 (642)
Q Consensus 136 ~~~~~---~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~----~p~C~~~~C~~p~~--~~~g~~~~~~~~~C~~~~~~ 206 (642)
..|.- +..|+=+ .|+. .+.|.++|+---. --.|. .|..|-. -..|-.+. |-.|... ..
T Consensus 1797 ~hy~~~~~Cl~CdC~---~Gs~-----Sr~C~adGqC~C~pgaiGRqCd--rCd~pfaevttlgCrv~--y~~CPk~-ie 1863 (2531)
T KOG4289|consen 1797 NHYRPIGSCLPCDCY---FGSD-----SRECDADGQCPCKPGAIGRQCD--RCDNPFAEVTTLGCRVV--YDKCPKA-IE 1863 (2531)
T ss_pred ccccCCCcceeeccc---cCCC-----cccccCCCcCCCCCcccccccc--ccCChhhhccccCcEEc--cccCcHH-Hh
Confidence 22211 4555544 5676 7778777743200 01121 2333221 11221111 1112100 01
Q ss_pred CCC-ccccccCcEEEEEcccCccccCCccCCCceEEeccCCeecCCC-Ccee
Q psy833 207 YGN-FLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGD-LRCE 256 (642)
Q Consensus 207 ~g~-~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~-P~C~ 256 (642)
+|- ....++|+.+...|..| -.|.+. +.|.+.|-|..+. -.|.
T Consensus 1864 ~giwWP~tkfG~~a~~pCP~G--~~G~Av-----R~C~e~~gWl~pnlfNCT 1908 (2531)
T KOG4289|consen 1864 AGIWWPQTKFGSPAAVPCPKG--SSGLAV-----RHCDETGGWLPPNLFNCT 1908 (2531)
T ss_pred hcccccccccCCcccccCCCC--cchhhh-----hhhhccCCCCCchhcccC
Confidence 111 13378999999999999 457765 6899999998543 2344
No 38
>KOG0994|consensus
Probab=89.99 E-value=0.67 Score=54.49 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=26.1
Q ss_pred EEeCCCCeeccCCcCCCCceEecccCCeeecCCCCccCCcCCCCC
Q psy833 141 FFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPG 185 (642)
Q Consensus 141 ~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C~~~~C~~p~ 185 (642)
..+|.+||- |.. -..|+ .-.|-.+.-.|.+-.|.+-.
T Consensus 1085 QCqCkpGfG--GR~-----C~qCq-el~WGdP~~~C~aCdCd~rG 1121 (1758)
T KOG0994|consen 1085 QCQCKPGFG--GRT-----CSQCQ-ELYWGDPNEKCRACDCDPRG 1121 (1758)
T ss_pred ceeccCCCC--Ccc-----hhHHH-HhhcCCCCCCceecCCCCCC
Confidence 789999985 333 34564 45698888899988887543
No 39
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=87.56 E-value=1.6 Score=33.60 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=28.1
Q ss_pred eecceEEEEEEEeCCCCEEEEEEEEEEecCCCCe
Q psy833 546 TFHDMAVKYIAYDFDGNVAICEINITVVDETPPL 579 (642)
Q Consensus 546 ~~G~~~Vtyta~D~~Gn~a~C~f~v~v~d~~pP~ 579 (642)
+-|.+.|+++++|.+||+.+=...+.+.|...|.
T Consensus 21 ~dg~yt~~v~a~D~AGN~~~~~~~~~i~d~~~p~ 54 (60)
T PF12245_consen 21 ADGEYTLTVTATDKAGNTSSSTTQIVIVDNTAPA 54 (60)
T ss_pred CCccEEEEEEEEECCCCEEEeeeEEEEEcCCCCC
Confidence 3489999999999999998766677777888764
No 40
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=87.44 E-value=0.63 Score=35.05 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=24.3
Q ss_pred ecceEEEEEEEeCCCCEEEE-EEEEEEecCCCC
Q psy833 547 FHDMAVKYIAYDFDGNVAIC-EINITVVDETPP 578 (642)
Q Consensus 547 ~G~~~Vtyta~D~~Gn~a~C-~f~v~v~d~~pP 578 (642)
-|.+.|+.+|+|.+||...- .+.|+ .|+.+|
T Consensus 23 dG~y~itv~a~D~AGN~s~~~~~~~t-iDttaP 54 (54)
T PF13754_consen 23 DGTYTITVTATDAAGNTSTSSSVTFT-IDTTAP 54 (54)
T ss_pred CccEEEEEEEEeCCCCCCCccceeEE-EeCCCC
Confidence 49999999999999998655 34444 488877
No 41
>KOG4289|consensus
Probab=87.03 E-value=1 Score=54.28 Aligned_cols=135 Identities=22% Similarity=0.439 Sum_probs=67.0
Q ss_pred CCcccCCCCceecCCCCCCceeCCCCceecC-CCCcccc-------ccc-----cCCCCCeecCCCCCCcccCCCCcccC
Q psy833 23 KTCTPCPRGFYQNNDRQGVCLKCPMGTYTRE-EGSKAVQ-------ECV-----PVCGYGTYSPTGLVPCLECPRNSYTG 89 (642)
Q Consensus 23 ~~C~~Cp~G~y~~~~~~~~C~~Cp~g~~~~~-~gs~~~~-------~C~-----~~C~~G~y~~~g~~~C~~C~~G~y~~ 89 (642)
.+| .||+|+|........=++||.|.|... .|.-+|. +|- ++|+.-+|...|. |.+|.=+.-..
T Consensus 1739 Y~C-~C~~g~~G~~Ce~~~dq~CPrGWWG~P~CgpC~CavsKgfdp~CnKt~G~CqCKe~hy~~~~~--Cl~CdC~~Gs~ 1815 (2531)
T KOG4289|consen 1739 YTC-ECPPGYTGPYCELRADQPCPRGWWGFPTCGPCNCAVSKGFDPDCNKTNGQCQCKENHYRPIGS--CLPCDCYFGSD 1815 (2531)
T ss_pred eeE-ECCCcccCcchhhhccCCCCCcccCCCCccCccccccCCCCCCccccCcceeeccccccCCCc--ceeeccccCCC
Confidence 455 566666665432222346666666532 1221211 121 1688888887764 88887552111
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCCCCCCCCC----------------CCCCCccceecC-CCCeeeEEeCCCCeeccC
Q psy833 90 EPPVGGHKDCEACPANMFTYQPAAPARNFCRVP----------------TPGAEYGNFLDT-RYQSSFFFGCQDTFKLAG 152 (642)
Q Consensus 90 ~~p~~g~~~C~~Cp~G~~~~~~~~~s~~~C~~~----------------~~~p~nG~~~~~-~~~~~~~~~C~~Gy~l~g 152 (642)
+.--....+|. |..|-... .+..|..+ +.+++.|..... +........|..|-. |
T Consensus 1816 Sr~C~adGqC~-C~pgaiGR-----qCdrCd~pfaevttlgCrv~y~~CPk~ie~giwWP~tkfG~~a~~pCP~G~~--G 1887 (2531)
T KOG4289|consen 1816 SRECDADGQCP-CKPGAIGR-----QCDRCDNPFAEVTTLGCRVVYDKCPKAIEAGIWWPQTKFGSPAAVPCPKGSS--G 1887 (2531)
T ss_pred cccccCCCcCC-CCCccccc-----cccccCChhhhccccCcEEccccCcHHHhhcccccccccCCcccccCCCCcc--h
Confidence 11001122333 54443211 12222211 123344443332 112222888999854 7
Q ss_pred CcCCCCceEecccCCeeecCC
Q psy833 153 QTDKNDNVVRCQANGIWDFGD 173 (642)
Q Consensus 153 ~~~~~~~~~~C~~~G~Ws~~~ 173 (642)
.. ++.|.+.|.|..+.
T Consensus 1888 ~A-----vR~C~e~~gWl~pn 1903 (2531)
T KOG4289|consen 1888 LA-----VRHCDETGGWLPPN 1903 (2531)
T ss_pred hh-----hhhhhccCCCCCch
Confidence 77 99999999998653
No 42
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=85.01 E-value=9 Score=40.19 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=26.9
Q ss_pred cceEEEEEEEeCCCCEEEEEEEEEEecCCCCeEe
Q psy833 548 HDMAVKYIAYDFDGNVAICEINITVVDETPPLLS 581 (642)
Q Consensus 548 G~~~Vtyta~D~~Gn~a~C~f~v~v~d~~pP~i~ 581 (642)
|.+.|+.+++|.+||.+.-...++ .|+++|.+.
T Consensus 12 ~~~~v~vt~tD~aGN~~~~t~~~~-vDt~~P~v~ 44 (317)
T PF13753_consen 12 GTYTVSVTVTDAAGNTSTATQSIT-VDTTAPTVT 44 (317)
T ss_pred CcEEEEEEEEeCCCCeeeeeEEEE-EecCCCcee
Confidence 778999999999999988666665 588888554
No 43
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=81.58 E-value=1.8 Score=36.91 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=14.2
Q ss_pred CCCCccCCCCeeecCCCCCcccCC
Q psy833 6 VPRCLHCPAGTFAGINQKTCTPCP 29 (642)
Q Consensus 6 ~~~C~~C~~G~~~~~~~~~C~~Cp 29 (642)
...|..|.+|++.+.....|..|+
T Consensus 3 ~~~Ct~C~~g~~~~~~~~~C~~C~ 26 (96)
T PTZ00382 3 PAVCTSCDSDKKPNKDGSGCVLCS 26 (96)
T ss_pred ccccCcCCCCCccCCCCCcCCcCC
Confidence 345666666666654445566665
No 44
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=78.17 E-value=2 Score=31.46 Aligned_cols=12 Identities=50% Similarity=1.068 Sum_probs=5.4
Q ss_pred ccccCCCCCeec
Q psy833 61 ECVPVCGYGTYS 72 (642)
Q Consensus 61 ~C~~~C~~G~y~ 72 (642)
.|...|++|+|.
T Consensus 30 ~Cv~~C~~~~~~ 41 (49)
T cd00064 30 TCVSECPEGTYA 41 (49)
T ss_pred cccccCCCCcee
Confidence 344444444444
No 45
>KOG3512|consensus
Probab=77.15 E-value=3.3 Score=44.50 Aligned_cols=85 Identities=22% Similarity=0.605 Sum_probs=45.9
Q ss_pred CCCCccCCCCeeecCCCCCcccCCCCceecCC----CCCCceeCC---CCceecCCCCccccccccCCCCCeecCCCCCC
Q psy833 6 VPRCLHCPAGTFAGINQKTCTPCPRGFYQNND----RQGVCLKCP---MGTYTREEGSKAVQECVPVCGYGTYSPTGLVP 78 (642)
Q Consensus 6 ~~~C~~C~~G~~~~~~~~~C~~Cp~G~y~~~~----~~~~C~~Cp---~g~~~~~~gs~~~~~C~~~C~~G~y~~~g~~~ 78 (642)
...|++|...+- +..|..|-.|||++.. ....|++|. -|.-..... .....| .|+.|-. | ..
T Consensus 358 ggvClnCrHnTa----GrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCN-q~tGqC--pCkeGvt---G-~t 426 (592)
T KOG3512|consen 358 GGVCLNCRHNTA----GRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCN-QTTGQC--PCKEGVT---G-LT 426 (592)
T ss_pred cceEeecccCCC----CcccccccCccccCCCCCCchhhhhhhcCCccccccccccc-ccCCcc--cCCCCCc---c-cc
Confidence 345777775554 4579899999999863 346688884 332111000 001134 3555533 2 35
Q ss_pred cccCCCCcccCCCCCCCCCCCCCCCC
Q psy833 79 CLECPRNSYTGEPPVGGHKDCEACPA 104 (642)
Q Consensus 79 C~~C~~G~y~~~~p~~g~~~C~~Cp~ 104 (642)
|..|..|.+++.. -..-|..||.
T Consensus 427 CnrCa~gyqqsrs---~vapcik~p~ 449 (592)
T KOG3512|consen 427 CNRCAPGYQQSRS---PVAPCIKIPT 449 (592)
T ss_pred cccccchhhcccC---CCcCceecCC
Confidence 6777777666542 2234555554
No 46
>PHA02714 CD-30-like protein; Provisional
Probab=76.23 E-value=4.2 Score=33.95 Aligned_cols=57 Identities=23% Similarity=0.730 Sum_probs=29.6
Q ss_pred cCCCCceecCCCCCCceeC---CCCceecC-CCCccccccccCCCCCeecCC-CCCCcccCCCCc
Q psy833 27 PCPRGFYQNNDRQGVCLKC---PMGTYTRE-EGSKAVQECVPVCGYGTYSPT-GLVPCLECPRNS 86 (642)
Q Consensus 27 ~Cp~G~y~~~~~~~~C~~C---p~g~~~~~-~gs~~~~~C~~~C~~G~y~~~-g~~~C~~C~~G~ 86 (642)
.|+.+||.+.. ...|.+| -.+.-... -+..+-..|+ |++|++... ...+|..|...+
T Consensus 23 qC~~dYY~Dpe-~g~CtACVtC~~~lVEktPC~~ns~RvCe--CkpGm~C~t~A~NsCaRC~~h~ 84 (110)
T PHA02714 23 TCPKDYYLEPE-DGLCTACVTCLSNMVEKQSCGPDKPRKCQ--CGPGLKCTVPAVNSCARCTPDT 84 (110)
T ss_pred cCCCcccccCC-CCceeeecccCCCcEEeccCCCCCCceec--CCCCCEEccccccchhhccccc
Confidence 57888888742 2234444 33332211 1222233454 888888765 334566665543
No 47
>KOG4611|consensus
Probab=75.80 E-value=2.7 Score=43.39 Aligned_cols=59 Identities=31% Similarity=0.610 Sum_probs=38.2
Q ss_pred CCcccCCCCceecCCCCCCceeCCCCceecCCCCccc------------cccccCCCCCeecCCCCCCcccCCC
Q psy833 23 KTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAV------------QECVPVCGYGTYSPTGLVPCLECPR 84 (642)
Q Consensus 23 ~~C~~Cp~G~y~~~~~~~~C~~Cp~g~~~~~~gs~~~------------~~C~~~C~~G~y~~~g~~~C~~C~~ 84 (642)
..|..||.|+...- +|+-|..|-+|+-.....++-. .-|. .|..|+|.+.. ..|..|..
T Consensus 50 ptceecpegtlssp-dqtgclncnngtchcpsqstlifrdasgnlltndafcg-ncasgfyrndn-gyctkcet 120 (747)
T KOG4611|consen 50 PTCEECPEGTLSSP-DQTGCLNCNNGTCHCPSQSTLIFRDASGNLLTNDAFCG-NCASGFYRNDN-GYCTKCET 120 (747)
T ss_pred CccccCCCcccCCC-ccCCceecCCCccCCCCcceEEEEcCCCCeeccccccc-cccccceECCC-cccccccc
Confidence 56888999998776 7888888888765443322221 1244 67888887653 35666663
No 48
>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A ....
Probab=75.58 E-value=2.1 Score=38.76 Aligned_cols=41 Identities=27% Similarity=0.694 Sum_probs=25.6
Q ss_pred CCCCCccCCCCeeecCCCCCcc-cCCCCceecCC--CCCCceeCCCCc
Q psy833 5 QVPRCLHCPAGTFAGINQKTCT-PCPRGFYQNND--RQGVCLKCPMGT 49 (642)
Q Consensus 5 ~~~~C~~C~~G~~~~~~~~~C~-~Cp~G~y~~~~--~~~~C~~Cp~g~ 49 (642)
....|+.|+. +.. ..+|+ .||.++|.... ....|++|.+.-
T Consensus 15 ~~~~C~sC~~-~~~---~g~Cv~~C~~~~~~~~~~~~~~~C~~Ch~~C 58 (132)
T PF14843_consen 15 GPDQCLSCRN-FSF---NGTCVASCPDGYYFDGSYEDSNTCQPCHPEC 58 (132)
T ss_dssp STTCBSSBSS-EEE---TTEEESSTSSSSSSSSEEEETTEEEE--TTB
T ss_pred ChhhccCccC-ccc---CCcchhhcccccccccccccCCcCcccChhh
Confidence 4677999985 332 37896 69987554321 256799987766
No 49
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=75.54 E-value=1.2 Score=41.36 Aligned_cols=66 Identities=26% Similarity=0.649 Sum_probs=34.0
Q ss_pred CCCCccCCCCeeecCCCCCcc-cCCCCceecCCCCCCce---eCCC-------CceecCCCCccccccccCCCCCeecC-
Q psy833 6 VPRCLHCPAGTFAGINQKTCT-PCPRGFYQNNDRQGVCL---KCPM-------GTYTREEGSKAVQECVPVCGYGTYSP- 73 (642)
Q Consensus 6 ~~~C~~C~~G~~~~~~~~~C~-~Cp~G~y~~~~~~~~C~---~Cp~-------g~~~~~~gs~~~~~C~~~C~~G~y~~- 73 (642)
+..|..|..-++ .++|+ .||+|+|.-. ..|. .|+. ..+.... ..|...|+.||+..
T Consensus 64 ~~~C~aCr~~~~----~g~Cv~~CP~~~Y~~~---~rCVt~~~C~~~~~~~~~~~~~~~~-----~~Cv~~CP~gy~~~~ 131 (149)
T PF00757_consen 64 PSDCYACRHFSY----NGTCVEQCPPGKYEFG---RRCVTKEECPSMCESSKEYPFLIFN-----GSCVRECPSGYMEVE 131 (149)
T ss_dssp TTSESCESSEEE----TTEEESS-STT-EEET---TEEE-HSSHHCCTTTTSTTSEEEET-----TEEESS-TTTEEEEE
T ss_pred CCcCHHHhCcCc----CCeecccCChhhcccc---cEeeccccCCchhhcccccceeeeC-----CcccccCCCCCEECC
Confidence 455666664333 34775 4777777752 2343 5552 2222222 26777777877774
Q ss_pred CCCCCcccCC
Q psy833 74 TGLVPCLECP 83 (642)
Q Consensus 74 ~g~~~C~~C~ 83 (642)
.+...|.+|.
T Consensus 132 ~~~~~C~~C~ 141 (149)
T PF00757_consen 132 NNTRECVPCD 141 (149)
T ss_dssp TTCEEEEE-S
T ss_pred CCCceEeeCC
Confidence 3445677666
No 50
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=73.92 E-value=2.3 Score=42.55 Aligned_cols=57 Identities=28% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCceecCCCCCC-ceeCCCCceecCCCCccccccccCCCCCeecCCCCCCcccCCCCc
Q psy833 30 RGFYQNNDRQGV-CLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLECPRNS 86 (642)
Q Consensus 30 ~G~y~~~~~~~~-C~~Cp~g~~~~~~gs~~~~~C~~~C~~G~y~~~g~~~C~~C~~G~ 86 (642)
+=+|-+...+.. =..|.+|+-....--.+|.+|-.+|.||+|++.-...|..|....
T Consensus 206 ~i~yve~S~q~v~idsC~PGfG~N~~~h~~C~~CCVvCsPgTysp~~~~~C~~C~~~~ 263 (271)
T PF07354_consen 206 EIHYVEHSFQMVRIDSCRPGFGKNDILHSDCPSCCVVCSPGTYSPDDDVHCQQCNSSR 263 (271)
T ss_pred ceEEeccccceEEeeccCCCCCcCcccCCCCCCeeEECCCcccCCCCCceEEecCcce
Confidence 334444433322 236677765554444456666667888888777556777777543
No 51
>KOG1836|consensus
Probab=72.38 E-value=9.4 Score=48.55 Aligned_cols=11 Identities=18% Similarity=0.319 Sum_probs=5.6
Q ss_pred CCccCCcCCCC
Q psy833 174 LRCEGPVCSDP 184 (642)
Q Consensus 174 p~C~~~~C~~p 184 (642)
-.|....|-+.
T Consensus 886 ~~c~~c~c~p~ 896 (1705)
T KOG1836|consen 886 DKCFACGCVPA 896 (1705)
T ss_pred CccccccCccC
Confidence 34665555443
No 52
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=71.35 E-value=4.1 Score=29.70 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=3.7
Q ss_pred CccCCCCee
Q psy833 9 CLHCPAGTF 17 (642)
Q Consensus 9 C~~C~~G~~ 17 (642)
|+.|+.|+|
T Consensus 17 C~~C~~~~~ 25 (49)
T cd00064 17 CTSCRHGFY 25 (49)
T ss_pred CccCcCccC
Confidence 444444443
No 53
>KOG4611|consensus
Probab=68.71 E-value=5.3 Score=41.36 Aligned_cols=45 Identities=29% Similarity=0.689 Sum_probs=27.9
Q ss_pred CCCccCCCCeeecCCCCCcccCCCCc---eecCCCCCCceeCCCCceecC
Q psy833 7 PRCLHCPAGTFAGINQKTCTPCPRGF---YQNNDRQGVCLKCPMGTYTRE 53 (642)
Q Consensus 7 ~~C~~C~~G~~~~~~~~~C~~Cp~G~---y~~~~~~~~C~~Cp~g~~~~~ 53 (642)
.+|..||.-+..+.....| .|.++. |+.+ --..|..||.|+.+..
T Consensus 16 lrceicpnttipsddmmsc-kcsknqieifrng-fvptceecpegtlssp 63 (747)
T KOG4611|consen 16 LRCEICPNTTIPSDDMMSC-KCSKNQIEIFRNG-FVPTCEECPEGTLSSP 63 (747)
T ss_pred EEEEecCCCCCCcccceec-ccccchhhHhhcC-CCCccccCCCcccCCC
Confidence 3577777776655545555 555544 3333 3456899999987654
No 54
>smart00261 FU Furin-like repeats.
Probab=68.37 E-value=5.9 Score=28.38 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=3.8
Q ss_pred CceeCCCCc
Q psy833 41 VCLKCPMGT 49 (642)
Q Consensus 41 ~C~~Cp~g~ 49 (642)
.|+.|..|+
T Consensus 21 ~C~~C~~~~ 29 (46)
T smart00261 21 DCTSCKHGF 29 (46)
T ss_pred cCccCCccc
Confidence 344444443
No 55
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=65.20 E-value=8.2 Score=30.16 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=27.8
Q ss_pred ccccCcEEEEEcccCccccCCccCCCceEEeccCCeecCC
Q psy833 212 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFG 251 (642)
Q Consensus 212 ~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~ 251 (642)
....|.++...|..++...+........+.|.++|+|...
T Consensus 16 ~T~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~~ 55 (66)
T PF02793_consen 16 PTPAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEEH 55 (66)
T ss_dssp SBETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBECS
T ss_pred CCCCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCCc
Confidence 4788999999999987433221111134799999999863
No 56
>smart00261 FU Furin-like repeats.
Probab=64.48 E-value=5 Score=28.76 Aligned_cols=15 Identities=33% Similarity=1.019 Sum_probs=8.4
Q ss_pred CCCcccCCCCceecC
Q psy833 22 QKTCTPCPRGFYQNN 36 (642)
Q Consensus 22 ~~~C~~Cp~G~y~~~ 36 (642)
...|+.|..|+|...
T Consensus 19 ~~~C~~C~~~~~l~~ 33 (46)
T smart00261 19 PDDCTSCKHGFFLDG 33 (46)
T ss_pred cCcCccCCcccCCCC
Confidence 345666666665543
No 57
>KOG1836|consensus
Probab=63.18 E-value=11 Score=48.02 Aligned_cols=68 Identities=26% Similarity=0.635 Sum_probs=39.4
Q ss_pred cCCCCeeecCCCCCcccCCCCceecCC--CC-CCceeCC-CCc-eecCCCCcccccccc--------CCCCCeecCC--C
Q psy833 11 HCPAGTFAGINQKTCTPCPRGFYQNND--RQ-GVCLKCP-MGT-YTREEGSKAVQECVP--------VCGYGTYSPT--G 75 (642)
Q Consensus 11 ~C~~G~~~~~~~~~C~~Cp~G~y~~~~--~~-~~C~~Cp-~g~-~~~~~gs~~~~~C~~--------~C~~G~y~~~--g 75 (642)
.||.|+- +..|..|+.|+.+... +. ..|.+|. .|+ -.....+..|. |+. .|..|||... |
T Consensus 698 ~C~~g~t----G~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~-C~~~t~G~~C~~C~~GfYg~~~~~ 772 (1705)
T KOG1836|consen 698 TCPVGYT----GQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCK-CKHNTFGGQCAQCVDGFYGLPDLG 772 (1705)
T ss_pred cCCCCcc----cchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCcee-cccCCCCCchhhhcCCCCCccccC
Confidence 4888776 4588888888877531 11 4566776 444 22233333343 432 7888888764 3
Q ss_pred CCC-cccCC
Q psy833 76 LVP-CLECP 83 (642)
Q Consensus 76 ~~~-C~~C~ 83 (642)
... |++|+
T Consensus 773 ~~~dC~~C~ 781 (1705)
T KOG1836|consen 773 TSGDCQPCP 781 (1705)
T ss_pred CCCCCccCC
Confidence 333 76555
No 58
>PF00020 TNFR_c6: TNFR/NGFR cysteine-rich region; InterPro: IPR001368 A number of proteins, some of which are known to be receptors for growth factors have been found to contain a cysteine-rich domain at the N-terminal region that can be subdivided into four (or in some cases, three) repeats containing six conserved cysteines all of which are involved in intrachain disulphide bonds []. CD27 (also called S152 or T14) mediates a co-stimulatory signal for T and B cell activation and is involved in murine T cell development. Tyrosine-phosphorylation of ZAP-70 following CD27 ligation of T cells has been reported [], but not confirmed independently. CD30 was originally identified as Ki-1, an antigen expressed on Reed-Sternberg cells in Hodgkin's lymphomas and other non-Hodgkin's lymphomas, particularly diffuse large-cell lymphoma and immunoblastic lymphoma. CD30 has pleiotropic effects on CD30-positive lymphoma cell lines ranging from cell proliferation to cell death. It is thought to be involved in negative selection of T-cells in the thymus and is involved in TCR-mediated cell death. CD30 is a member of the TNFR family of molecules, activate NFkB through interaction with TRAF2 and TRAF5. CD40 (Bp50) plays a central role in the regulation of cell-mediated immunity as well as antibody mediated immunity. It is central to T cell dependent (TD)-responses and may influence survival of B cell lymphomas. CD95 (also called APO-1, fas antigen, Fas tumour necrosis factor receptor superfamily, member 6, TNFRSF6 or apoptosis antigen 1, APT1) is expressed, typically at high levels, on activated T and B cells. It is involved in the mediation of apoptosis-inducing signals. Other proteins known to belong to this family [, , , ] are, tumour Necrosis Factor type I and type II receptors (TNFR), Rabbit fibroma virus soluble TNF receptor (protein T2), lymphotoxin alpha/beta receptor, low-affinity nerve growth factor receptor (LA-NGFR) (p75), T-cell antigen OX40, Wsl-1, a receptor (for a yet undefined ligand) that mediates apoptosis and Vaccinia virus protein A53 (SalF19R). CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0005488 binding; PDB: 3TJE_F 3QD6_S 3ALQ_U 3IJ2_Y 3BUK_D 1SG1_X 1NCF_B 1EXT_A 1FT4_B 1TNR_R ....
Probab=57.57 E-value=5.9 Score=27.39 Aligned_cols=9 Identities=44% Similarity=1.246 Sum_probs=5.0
Q ss_pred CCCCceecC
Q psy833 28 CPRGFYQNN 36 (642)
Q Consensus 28 Cp~G~y~~~ 36 (642)
|+.|+|.+.
T Consensus 1 C~~g~y~~~ 9 (39)
T PF00020_consen 1 CPPGTYSDS 9 (39)
T ss_dssp ECTTEEEES
T ss_pred CccCcccCC
Confidence 455566553
No 59
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=56.40 E-value=15 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.587 Sum_probs=18.7
Q ss_pred CCCcccCCCCceecCCCCCCceeCCC
Q psy833 22 QKTCTPCPRGFYQNNDRQGVCLKCPM 47 (642)
Q Consensus 22 ~~~C~~Cp~G~y~~~~~~~~C~~Cp~ 47 (642)
...|+.|..|+|... +...|.+|+.
T Consensus 3 ~~~Ct~C~~g~~~~~-~~~~C~~C~~ 27 (96)
T PTZ00382 3 PAVCTSCDSDKKPNK-DGSGCVLCSV 27 (96)
T ss_pred ccccCcCCCCCccCC-CCCcCCcCCC
Confidence 457889998888775 3456888874
No 60
>KOG4258|consensus
Probab=55.34 E-value=4.2 Score=47.01 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.6
Q ss_pred cceEEEEEEEeCCCC
Q psy833 548 HDMAVKYIAYDFDGN 562 (642)
Q Consensus 548 G~~~Vtyta~D~~Gn 562 (642)
|.+.+.-+|+..+||
T Consensus 897 G~y~~~vratSlaGn 911 (1025)
T KOG4258|consen 897 GNYSVRVRATSLAGN 911 (1025)
T ss_pred CcEEEEEEEEeeccC
Confidence 889999999999998
No 61
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=53.32 E-value=10 Score=23.40 Aligned_cols=15 Identities=13% Similarity=0.487 Sum_probs=11.7
Q ss_pred eEEeCCCCeeccCCc
Q psy833 140 FFFGCQDTFKLAGQT 154 (642)
Q Consensus 140 ~~~~C~~Gy~l~g~~ 154 (642)
|..+|.+||+|....
T Consensus 2 y~C~C~~Gy~l~~d~ 16 (24)
T PF12662_consen 2 YTCSCPPGYQLSPDG 16 (24)
T ss_pred EEeeCCCCCcCCCCC
Confidence 467899999987643
No 62
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=47.02 E-value=13 Score=26.87 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=4.8
Q ss_pred ceeCCCCcee
Q psy833 42 CLKCPMGTYT 51 (642)
Q Consensus 42 C~~Cp~g~~~ 51 (642)
|..|++|+|.
T Consensus 31 C~~C~~g~~g 40 (46)
T smart00180 31 CDRCAPGYYG 40 (46)
T ss_pred CCcCCCCcCC
Confidence 4444555443
No 63
>KOG1025|consensus
Probab=46.22 E-value=19 Score=42.11 Aligned_cols=73 Identities=26% Similarity=0.575 Sum_probs=40.6
Q ss_pred CCCCCCCCc-cCCCCeeecCCCCCcccCCCCceecCCCCCCc-eeCCCCceecCCCCccccccccCCCCCeecCC--CCC
Q psy833 2 DMNQVPRCL-HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVC-LKCPMGTYTREEGSKAVQECVPVCGYGTYSPT--GLV 77 (642)
Q Consensus 2 ~~~~~~~C~-~C~~G~~~~~~~~~C~~Cp~G~y~~~~~~~~C-~~Cp~g~~~~~~gs~~~~~C~~~C~~G~y~~~--g~~ 77 (642)
.+++.+.|. .||+-..++...++=..=|.|.|+-+. .| ..||.++.... | .|.-.|+.+.+... |..
T Consensus 244 ~f~d~G~C~~~CP~~~~yN~~T~~le~NPegkY~~Ga---~CVk~CP~n~lvD~-~-----sCVRaCp~~~~e~~~~g~~ 314 (1177)
T KOG1025|consen 244 KFNDSGICVETCPQLKVYNPTTFQLEPNPEGKYQYGA---TCVKECPHNLLVDN-G-----SCVRACPDDKMEVEENGVR 314 (1177)
T ss_pred ccccCceecccCCCceeEcCcceEEeeCCCccccccC---eehhhCCchhEecC-C-----ceeeecCCcccchhccCce
Confidence 456777787 788777666544444445566666541 24 35666655422 2 45556666655433 444
Q ss_pred CcccCC
Q psy833 78 PCLECP 83 (642)
Q Consensus 78 ~C~~C~ 83 (642)
.|.+|.
T Consensus 315 ~Ce~C~ 320 (1177)
T KOG1025|consen 315 MCEKCR 320 (1177)
T ss_pred eeeecC
Confidence 455544
No 64
>smart00008 HormR Domain present in hormone receptors.
Probab=46.10 E-value=23 Score=28.06 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=27.6
Q ss_pred ccccCcEEEEEcccCccccCCccCCCceEEeccCCeecC
Q psy833 212 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDF 250 (642)
Q Consensus 212 ~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~ 250 (642)
....|+++...|..++........ ..+.|.++|.|+.
T Consensus 17 ~t~~G~~~~~~CP~~~~g~~~~~~--a~R~C~~~G~W~~ 53 (70)
T smart00008 17 QTPAGQLVEVPCPDYFSGFSYKTG--ASRNCTENGGWSP 53 (70)
T ss_pred CCCCCCEEEecCCCcccCcCCCCC--EEEEcCCCCCCcc
Confidence 367899999999998766543210 2479999999985
No 65
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=43.83 E-value=7.9 Score=35.86 Aligned_cols=66 Identities=35% Similarity=0.842 Sum_probs=30.6
Q ss_pred CCCcccCCCCceecCCCCCCce-eCCCCceecCCCCccccccc--cCCC--------CCeecCCCCCCc-ccCCCCcccC
Q psy833 22 QKTCTPCPRGFYQNNDRQGVCL-KCPMGTYTREEGSKAVQECV--PVCG--------YGTYSPTGLVPC-LECPRNSYTG 89 (642)
Q Consensus 22 ~~~C~~Cp~G~y~~~~~~~~C~-~Cp~g~~~~~~gs~~~~~C~--~~C~--------~G~y~~~g~~~C-~~C~~G~y~~ 89 (642)
...|..| ++++-.. .|. .||+|+|.. |. .|. ..|+ ..+....| .| ..||.|+...
T Consensus 64 ~~~C~aC-r~~~~~g----~Cv~~CP~~~Y~~--~~----rCVt~~~C~~~~~~~~~~~~~~~~~--~Cv~~CP~gy~~~ 130 (149)
T PF00757_consen 64 PSDCYAC-RHFSYNG----TCVEQCPPGKYEF--GR----RCVTKEECPSMCESSKEYPFLIFNG--SCVRECPSGYMEV 130 (149)
T ss_dssp TTSESCE-SSEEETT----EEESS-STT-EEE--TT----EEE-HSSHHCCTTTTSTTSEEEETT--EEESS-TTTEEEE
T ss_pred CCcCHHH-hCcCcCC----eecccCChhhccc--cc----EeeccccCCchhhcccccceeeeCC--cccccCCCCCEEC
Confidence 5677777 4444322 353 677777776 22 343 3454 33322222 34 4677776653
Q ss_pred CCCCCCCCCCCCCC
Q psy833 90 EPPVGGHKDCEACP 103 (642)
Q Consensus 90 ~~p~~g~~~C~~Cp 103 (642)
. .+...|++|.
T Consensus 131 ~---~~~~~C~~C~ 141 (149)
T PF00757_consen 131 E---NNTRECVPCD 141 (149)
T ss_dssp E---TTCEEEEE-S
T ss_pred C---CCCceEeeCC
Confidence 2 2445565553
No 66
>smart00208 TNFR Tumor necrosis factor receptor / nerve growth factor receptor repeats. Repeats in growth factor receptors that are involved in growth factor binding. TNF/TNFR
Probab=41.40 E-value=25 Score=24.05 Aligned_cols=8 Identities=38% Similarity=0.916 Sum_probs=3.5
Q ss_pred CCCCceec
Q psy833 28 CPRGFYQN 35 (642)
Q Consensus 28 Cp~G~y~~ 35 (642)
|+.|+|.+
T Consensus 1 C~~g~y~~ 8 (39)
T smart00208 1 CKEGTYCS 8 (39)
T ss_pred CCCCeecC
Confidence 34444443
No 67
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=41.05 E-value=2.2e+02 Score=23.90 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=26.4
Q ss_pred eecceEEEEEEEeCCCCEEEEEEEEEEecCC
Q psy833 546 TFHDMAVKYIAYDFDGNVAICEINITVVDET 576 (642)
Q Consensus 546 ~~G~~~Vtyta~D~~Gn~a~C~f~v~v~d~~ 576 (642)
.+|...|..+|+|..|.++.=.|.|.|.+..
T Consensus 65 ~~g~~~i~v~a~D~~g~~~~~~f~i~V~~~~ 95 (97)
T smart00736 65 DVGSLSLKVTATDSSGASASDTFTITVVNTN 95 (97)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEEEEeCCC
Confidence 3589999999999999998889999886643
No 68
>KOG1225|consensus
Probab=40.90 E-value=50 Score=36.99 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=6.4
Q ss_pred EEeCCCCee
Q psy833 141 FFGCQDTFK 149 (642)
Q Consensus 141 ~~~C~~Gy~ 149 (642)
+..|++||+
T Consensus 328 ~C~C~~Gy~ 336 (525)
T KOG1225|consen 328 ECLCDEGYT 336 (525)
T ss_pred ceEeCCCCc
Confidence 667777776
No 69
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=40.88 E-value=38 Score=32.35 Aligned_cols=111 Identities=15% Similarity=0.378 Sum_probs=55.8
Q ss_pred CccceecCCCCeeeEEeCCCCeeccCCcCCCCceEecccCCeeecCCCCccCCcCCCCCCCCCceeeecceeeeeeCCcC
Q psy833 127 EYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQ 206 (642)
Q Consensus 127 ~nG~~~~~~~~~~~~~~C~~Gy~l~g~~~~~~~~~~C~~~G~Ws~~~p~C~~~~C~~p~~~~~g~~~~~~~~~C~~~~~~ 206 (642)
.||++... ..++...|++||.|.... +|.+ ++.|..+..... .--.|-.|...+
T Consensus 9 KNG~LiQM--SNHfEC~Cnegfvl~~En-------tCE~------------kv~C~~~e~~~K---~Cgdya~C~~~~-- 62 (197)
T PF06247_consen 9 KNGYLIQM--SNHFECKCNEGFVLKNEN-------TCEE------------KVECDKLENVNK---PCGDYAKCINQA-- 62 (197)
T ss_dssp BTEEEEEE--SSEEEEEESTTEEEEETT-------EEEE----------------SG-GGTTS---EEETTEEEEE-S--
T ss_pred cCCEEEEc--cCceEEEcCCCcEEcccc-------cccc------------ceecCcccccCc---cccchhhhhcCC--
Confidence 46776654 234588899999988443 3421 234555433221 111245565431
Q ss_pred CCCccccccCcEEEEEcccCccccCCccCCCceEEeccCCeecCCCCceecCcCCCCCCCCCcEEEccCCccccccCCCC
Q psy833 207 YGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQG 286 (642)
Q Consensus 207 ~g~~~~~~~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~~~~C~~p~~~~~g~~~~~~~~~~~~~~~~g 286 (642)
....-....-.|..||.|... +|. +..|..+.|+ +|.-+..+.. +.
T Consensus 63 -----~~~~~~~~~C~C~~gY~~~~~--------vCv--------p~~C~~~~Cg------~GKCI~d~~~-------~~ 108 (197)
T PF06247_consen 63 -----NKGEERAYKCDCINGYILKQG--------VCV--------PNKCNNKDCG------SGKCILDPDN-------PN 108 (197)
T ss_dssp -----STTSSTSEEEEE-TTEEESSS--------SEE--------EGGGSS---T------TEEEEEEEGG-------GS
T ss_pred -----CcccceeEEEecccCceeeCC--------eEc--------hhhcCceecC------CCeEEecCCC-------CC
Confidence 112223455567899988766 463 2367766675 4665554333 33
Q ss_pred CEEEEEccCCCeE
Q psy833 287 SEVQFGCNKPGYI 299 (642)
Q Consensus 287 s~~~~~C~~~Gy~ 299 (642)
.. .-+|+ -|+.
T Consensus 109 ~~-~CSC~-IGkV 119 (197)
T PF06247_consen 109 NP-TCSCN-IGKV 119 (197)
T ss_dssp EE-EEEE--TEEE
T ss_pred Cc-eeEee-eceE
Confidence 33 77898 8998
No 70
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=36.39 E-value=32 Score=25.21 Aligned_cols=9 Identities=44% Similarity=1.187 Sum_probs=3.5
Q ss_pred ceeCCCCce
Q psy833 42 CLKCPMGTY 50 (642)
Q Consensus 42 C~~Cp~g~~ 50 (642)
|..|++|+|
T Consensus 32 C~~C~~g~~ 40 (50)
T cd00055 32 CDRCAPGYY 40 (50)
T ss_pred CCCCCCCCc
Confidence 333444433
No 71
>KOG1214|consensus
Probab=32.75 E-value=1.1e+02 Score=35.86 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=29.9
Q ss_pred CCCCCCCCceeeccCCCCCCCCCCCCCCCCCccceecCCCCeeeEEeCCCCeeccCCc
Q psy833 97 KDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQT 154 (642)
Q Consensus 97 ~~C~~Cp~G~~~~~~~~~s~~~C~~~~~~p~nG~~~~~~~~~~~~~~C~~Gy~l~g~~ 154 (642)
..|. |-.|+....-.+.+...|... --+-...|-....++..+|.+||+-.|.+
T Consensus 809 y~C~-CLPGfsGDG~~c~dvDeC~ps---rChp~A~CyntpgsfsC~C~pGy~GDGf~ 862 (1289)
T KOG1214|consen 809 YSCA-CLPGFSGDGHQCTDVDECSPS---RCHPAATCYNTPGSFSCRCQPGYYGDGFQ 862 (1289)
T ss_pred EEEe-ecCCccCCccccccccccCcc---ccCCCceEecCCCcceeecccCccCCCce
Confidence 3444 777776665555555666521 11111122222233488999999977766
No 72
>PF14704 DERM: Dermatopontin
Probab=31.86 E-value=1.4e+02 Score=27.59 Aligned_cols=122 Identities=20% Similarity=0.499 Sum_probs=71.5
Q ss_pred eEEeCCCCeeccCCcCCCCceEecc--cCCeeecCCCCccCCcCCCCCC-CCCceeeecceeeeeeCCcCCCCccccccC
Q psy833 140 FFFGCQDTFKLAGQTDKNDNVVRCQ--ANGIWDFGDLRCEGPVCSDPGR-PVDGYQVATSYEQVRYDDEQYGNFLDTRYQ 216 (642)
Q Consensus 140 ~~~~C~~Gy~l~g~~~~~~~~~~C~--~~G~Ws~~~p~C~~~~C~~p~~-~~~g~~~~~~~~~C~~~~~~~g~~~~~~~g 216 (642)
+.|+|+.|..|.+-. ..... +|..|.- .|..+ +. +..+. .|.. + ....++
T Consensus 7 f~f~Cp~gq~i~~v~-----S~~~n~~eDR~W~F---~C~~~-----~~~~~~~~-------~~~~-----~--~vN~~d 59 (152)
T PF14704_consen 7 FSFQCPSGQGISGVR-----SYHSNNREDRRWSF---GCSPV-----GSGPTQGS-------SCWW-----S--YVNNYD 59 (152)
T ss_pred EEEECCCCCEEEEEE-----EEeCCCCCcccEEE---EEEeC-----CCCCCccc-------eEcc-----h--hhhccC
Confidence 489999999998877 66665 6888985 35533 22 11111 1221 1 225788
Q ss_pred cEEEEEcccCccccCCccCCCceEEeccCCeecCCCCceecCcCCCCCCCCCcEEEccCCccccccCCCCCEEEEEccCC
Q psy833 217 SSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKP 296 (642)
Q Consensus 217 s~~~~~C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~P~C~~~~C~~p~~~~~g~~~~~~~~~~~~~~~~gs~~~~~C~~~ 296 (642)
..+.|+|..|+.|.|-.+.+++. .+|-.|. ..|..+.= ..+.+-... ..+. ..++....|.-. .
T Consensus 60 ~~~~~tCp~n~~i~G~~S~h~n~---~eDR~w~---f~C~~~~~---~~~~~C~~~-t~~~-----N~~d~~~~~~~~-~ 123 (152)
T PF14704_consen 60 QPFNFTCPSNYYITGMQSYHDNS---KEDRRWQ---FQCCRING---ATLYNCYWT-TGYV-----NNYDGPLDFTVP-S 123 (152)
T ss_pred CcEEEECCCCCEEEEEEEEecCC---cccCceE---EEEEecCC---ceeecceec-cccc-----ccCCCcEEEEcC-C
Confidence 99999999999999975533211 1466676 35654310 011111101 1111 117778888887 8
Q ss_pred CeEEeCCC
Q psy833 297 GYILINPR 304 (642)
Q Consensus 297 Gy~l~G~~ 304 (642)
||.|.|-.
T Consensus 124 ~~~i~G~~ 131 (152)
T PF14704_consen 124 GYVITGVS 131 (152)
T ss_pred CcEEEeEe
Confidence 99998754
No 73
>KOG1225|consensus
Probab=29.86 E-value=1.2e+02 Score=34.22 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=5.1
Q ss_pred EecccCCeee
Q psy833 161 VRCQANGIWD 170 (642)
Q Consensus 161 ~~C~~~G~Ws 170 (642)
.-|...|.+.
T Consensus 316 adC~g~G~Ci 325 (525)
T KOG1225|consen 316 ADCSGHGKCI 325 (525)
T ss_pred ccCCCCCccc
Confidence 3455555554
No 74
>PF09463 Opy2: Opy2 protein; InterPro: IPR018571 Opy2p acts as a membrane anchor in the HOG signalling pathway []. This entry represents a conserved N-terminal domain.
Probab=24.15 E-value=50 Score=22.50 Aligned_cols=22 Identities=32% Similarity=0.809 Sum_probs=10.5
Q ss_pred CcccCCCCceecCCCCCCceeCC
Q psy833 24 TCTPCPRGFYQNNDRQGVCLKCP 46 (642)
Q Consensus 24 ~C~~Cp~G~y~~~~~~~~C~~Cp 46 (642)
.|-.|+.|.+.... ...|..||
T Consensus 10 ~CP~C~~ge~C~~t-~~tC~~C~ 31 (35)
T PF09463_consen 10 SCPSCPSGEECVLT-SQTCTSCP 31 (35)
T ss_pred CCCCCCCCCEEEec-CCChhhcc
Confidence 44445555555442 33355554
No 75
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=24.02 E-value=67 Score=32.47 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=7.1
Q ss_pred cCCCCeeecC
Q psy833 11 HCPAGTFAGI 20 (642)
Q Consensus 11 ~C~~G~~~~~ 20 (642)
+|.+|+=-+.
T Consensus 221 sC~PGfG~N~ 230 (271)
T PF07354_consen 221 SCRPGFGKND 230 (271)
T ss_pred ccCCCCCcCc
Confidence 6888886553
No 76
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=23.72 E-value=33 Score=24.90 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=4.1
Q ss_pred ceeCCCCceec
Q psy833 42 CLKCPMGTYTR 52 (642)
Q Consensus 42 C~~Cp~g~~~~ 52 (642)
|..|.+|+|..
T Consensus 31 C~~C~~g~~~~ 41 (49)
T PF00053_consen 31 CDQCKPGYFGL 41 (49)
T ss_dssp S-EE-TTEECS
T ss_pred CcCCCCccccc
Confidence 44444444443
No 77
>PF13948 DUF4215: Domain of unknown function (DUF4215)
Probab=22.51 E-value=76 Score=23.04 Aligned_cols=6 Identities=50% Similarity=1.353 Sum_probs=2.3
Q ss_pred CCCCCe
Q psy833 65 VCGYGT 70 (642)
Q Consensus 65 ~C~~G~ 70 (642)
+|..|.
T Consensus 20 ~CGDgi 25 (47)
T PF13948_consen 20 ICGDGI 25 (47)
T ss_pred ccCCCe
Confidence 333333
No 78
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=22.21 E-value=33 Score=29.58 Aligned_cols=31 Identities=32% Similarity=0.740 Sum_probs=21.7
Q ss_pred CCCcccC-CCCceecCCCCCCceeCCCCceecC
Q psy833 22 QKTCTPC-PRGFYQNNDRQGVCLKCPMGTYTRE 53 (642)
Q Consensus 22 ~~~C~~C-p~G~y~~~~~~~~C~~Cp~g~~~~~ 53 (642)
-..|..| +.|||+.. ++..|..|-.-.....
T Consensus 35 ~daCeiC~~~GY~q~g-~~lvC~~C~~~~~~~~ 66 (102)
T PF10080_consen 35 FDACEICGPKGYYQEG-DQLVCKNCGVRFNLPT 66 (102)
T ss_pred EEeccccCCCceEEEC-CEEEEecCCCEEehhh
Confidence 3678888 77888777 7778888865444433
No 79
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.11 E-value=1.2e+02 Score=27.29 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=21.1
Q ss_pred EEccCCCceeEEEecCCCcceeeecCCC-CeEEEeCCCCcc
Q psy833 588 IELVDKQDSYVMNFNETRRRVNVSDASG-EVTVTFSPDRAT 627 (642)
Q Consensus 588 i~~~~~~~~~~v~w~~p~~~~~~~Dnsg-~~~v~~~~~~g~ 627 (642)
+.++++ -+.|+|.|| -| .|.+++.++.+.
T Consensus 57 v~lteg--iYkvsWtEP---------TGTdVaL~f~pne~~ 86 (175)
T COG3479 57 VRLTEG--IYKVSWTEP---------TGTDVALTFNPNEYV 86 (175)
T ss_pred EEeeee--EEEEEeeCC---------CCceEEEEeccccce
Confidence 334444 789999999 66 788888877654
No 80
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=21.99 E-value=78 Score=21.36 Aligned_cols=14 Identities=29% Similarity=0.914 Sum_probs=9.8
Q ss_pred CCCcccCCCCceecC
Q psy833 22 QKTCTPCPRGFYQNN 36 (642)
Q Consensus 22 ~~~C~~Cp~G~y~~~ 36 (642)
..+| .||.||-.++
T Consensus 17 ~~~C-~CPeGyIlde 30 (34)
T PF09064_consen 17 PGQC-FCPEGYILDE 30 (34)
T ss_pred CCce-eCCCceEecC
Confidence 3467 7888877766
No 81
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=20.68 E-value=1.5e+02 Score=30.94 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=24.3
Q ss_pred cceEEEEE-EEeCCCCEEEE-EEEEEEecCC---CCeEe
Q psy833 548 HDMAVKYI-AYDFDGNVAIC-EINITVVDET---PPLLS 581 (642)
Q Consensus 548 G~~~Vtyt-a~D~~Gn~a~C-~f~v~v~d~~---pP~i~ 581 (642)
|.+.|+.+ ++|.+||.++= ...++ .|+. +|.|.
T Consensus 110 g~~ti~v~~~tD~aGN~~t~~s~~~~-vDt~~~~~p~vt 147 (317)
T PF13753_consen 110 GDYTITVTTVTDAAGNTSTAASQTFT-VDTTAPTAPTVT 147 (317)
T ss_pred CcceeEEEEEEccCCccccccccccc-cccccccccccc
Confidence 88899998 99999998765 44443 3665 57665
No 82
>PF14704 DERM: Dermatopontin
Probab=20.02 E-value=1.2e+02 Score=28.06 Aligned_cols=74 Identities=20% Similarity=0.461 Sum_probs=46.1
Q ss_pred cCcEEEEEcccCccccCCccCCCceEEec--cCCeecCCCCceecCcCCCCCCCCCcEEEccCCccccccCCCCCEEEEE
Q psy833 215 YQSSFFFGCQDTFKLAGQTDKNDNVVRCQ--ANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFG 292 (642)
Q Consensus 215 ~gs~~~~~C~~Gy~l~G~~~~~~~~~~C~--~~G~Ws~~~P~C~~~~C~~p~~~~~g~~~~~~~~~~~~~~~~gs~~~~~ 292 (642)
+...+.|+|..|..|.+-.+ .... +|-.|.- .|..+. ..+..+.-....+. +.++..+.|+
T Consensus 3 ~d~~f~f~Cp~gq~i~~v~S-----~~~n~~eDR~W~F---~C~~~~----~~~~~~~~~~~~~v-----N~~d~~~~~t 65 (152)
T PF14704_consen 3 YDQPFSFQCPSGQGISGVRS-----YHSNNREDRRWSF---GCSPVG----SGPTQGSSCWWSYV-----NNYDQPFNFT 65 (152)
T ss_pred CCCCEEEECCCCCEEEEEEE-----EeCCCCCcccEEE---EEEeCC----CCCCccceEcchhh-----hccCCcEEEE
Confidence 45668999999998888654 3443 6778983 676531 11111111111111 1188899999
Q ss_pred ccCCCeEEeCCCce
Q psy833 293 CNKPGYILINPRPI 306 (642)
Q Consensus 293 C~~~Gy~l~G~~~~ 306 (642)
|. .|+.|.|-.+.
T Consensus 66 Cp-~n~~i~G~~S~ 78 (152)
T PF14704_consen 66 CP-SNYYITGMQSY 78 (152)
T ss_pred CC-CCCEEEEEEEE
Confidence 99 89999876543
No 83
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=20.00 E-value=1.1e+02 Score=27.59 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=27.8
Q ss_pred cccCccceeeeeEEeeEEEEEeCcccceeeccc
Q psy833 438 MITLPKFVQARFVILGIVSYMDNACLKFELMGC 470 (642)
Q Consensus 438 ~~~~~~~~~~~~~~~~~v~~~C~~~~gf~l~GC 470 (642)
...++.+..+||+.....++.=..+|.++|.||
T Consensus 107 ~~~~~~~v~ARyvRi~p~~~~~~~~~r~ElyGc 139 (139)
T smart00231 107 VNEFPPPIVARYIRILPTGWNGNIILRVELLGC 139 (139)
T ss_pred EEecCCCEEEEEEEEEEeEcCCCcEEEEEEEcC
Confidence 345666678999999999998889999999997
Done!