RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy833
(642 letters)
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 80.1 bits (197), Expect = 3e-17
Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 33/204 (16%)
Query: 311 EPECKIIKPLGLASGRIPDSSINATSE-----SPYLVRVNA-----CSVPLIPGPRVQ-E 359
+C ++ LG+ SG I I A+S+ S R+N +Q +
Sbjct: 3 HMKC--MEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVD 60
Query: 360 LLAEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRP--TEIRFFYKQAESENFV 417
L + V A+ +G ++ + + + +
Sbjct: 61 LGLLRFVT------------------AVGTQGAISKETKKKYYVKTYKIDVSSNGEDWIT 102
Query: 418 VYFPNFNLTMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGCEEPKVEP 477
+ N + + N ++ + PK + RFV + ++ ++FE+ GC+
Sbjct: 103 IKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKITDYVD 162
Query: 478 LLGYDYGYSPCVDNEPPVFQNCPQ 501
G PC + +F PQ
Sbjct: 163 GSGSGSPCGPCSERRKHLFVQDPQ 186
>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat,
sushi, complement control protein, N glycosylation,
multi-domain, membrane adhesion; HET: NAG MAN; 2.70A
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A
Length = 319
Score = 80.8 bits (199), Expect = 8e-17
Identities = 35/190 (18%), Positives = 54/190 (28%), Gaps = 33/190 (17%)
Query: 135 RYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVA 194
+ C+ + G C G+W L+C VC G +G
Sbjct: 23 EPGEEITYSCKPGYVSRG----GMRKFICPLTGLWPINTLKCTPRVCPFAGILENGAVRY 78
Query: 195 TSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLR 254
T++ Y ++ F C F L G + +C G W
Sbjct: 79 TTF----------------EYPNTISFSCNTGFYLNG-----ADSAKCTEEGKWSPELPV 117
Query: 255 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVR---- 310
C +C P P + + F C P + + ITC
Sbjct: 118 CAPIICPPPSIPTFAT-LRVYKPSAGNNSLYRDTAVFECL-PQHAMFGNDTITCTTHGNW 175
Query: 311 --EPECKIIK 318
PEC+ +K
Sbjct: 176 TKLPECREVK 185
Score = 70.8 bits (173), Expect = 2e-13
Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 35/194 (18%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQ 192
++ Y+ + F C + G ++ + C +G W C C P RP +G+
Sbjct: 144 NSLYRDTAVFECLPQHAMFG-----NDTITCTTHGNWT-KLPECREVKCPFPSRPDNGFV 197
Query: 193 VATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGD 252
+ Y+ FGC D + L G + C G W
Sbjct: 198 NYPAKP-------------TLYYKDKATFGCHDGYSLDG-----PEEIECTKLGNWS-AM 238
Query: 253 LRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQ---GSEVQFGCNKPGYILINPRPITC- 308
C+ C P + + G +V F C +
Sbjct: 239 PSCKAS-CKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCK-NKEKKCSYTEDAQC 296
Query: 309 ----VREPECKIIK 318
+ P+C
Sbjct: 297 IDGTIEVPKCFKEH 310
>2wii_C H factor 1, complement factor H; immune system, sushi, secreted,
polymorphism, glycoprotein, complement system,
complement pathway, immune response; HET: NAG BMA; 2.70A
{Homo sapiens} PDB: 2rlp_A 2rlq_A
Length = 277
Score = 78.4 bits (193), Expect = 3e-16
Identities = 35/228 (15%), Positives = 59/228 (25%), Gaps = 38/228 (16%)
Query: 102 CPANMFTYQPAAPA--RNFCRVPTP----GAEYGNFLDTRYQSSFFFGCQDTFKLAGQTD 155
C + + C P Y + C + ++L G+ +
Sbjct: 53 CRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEIN 112
Query: 156 KNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRY 215
R W CE C P +G V+++ E R + +
Sbjct: 113 -----YRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDR----------EYHF 157
Query: 216 QSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATS 275
+ F C +K+ G + C +G W +C C P
Sbjct: 158 GQAVRFVCNSGYKIEGDE-----EMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKI 212
Query: 276 YEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVR-----EPECKIIK 318
+ Q+ CN GY C P C+ +
Sbjct: 213 IYKE------NERFQYKCN-MGYEYSERGDAVCTESGWRPLPSCEEAR 253
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 81.3 bits (200), Expect = 5e-16
Identities = 47/296 (15%), Positives = 74/296 (25%), Gaps = 40/296 (13%)
Query: 28 CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVP---------VCGYGTYSPTGLVP 78
C G+ +C G + ++ V C P G
Sbjct: 665 CQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPPVIVNGKHTGMMAENFLYGNEV 724
Query: 79 CLECPRN-SYTGEPPVGGHKDCEA-----CPANMFTYQPAAPARNFCRVPTPGAEYGNFL 132
EC + GE + D + P+ P V
Sbjct: 725 SYECDQGFYLLGEKKLQCRSDSKGHGSWSGPSPQCLRSPPVTRCPNPEVKHGYKLNKTHS 784
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQ 192
+ + C F + G V+RC + W G C P
Sbjct: 785 AYSHNDIVYVDCNPGFIMNGS-----RVIRCHTDNTWVPGVPTCIKKAFIGCPPPP---- 835
Query: 193 VATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGD 252
+ + GN S + C + L G + ++ C G W
Sbjct: 836 ------KTPNGNHTGGNIARFSPGMSILYSCDQGYLLVG-----EALLLCTHEGTWSQPA 884
Query: 253 LRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITC 308
C+ CS P + + +Y G+ V C GY+L C
Sbjct: 885 PHCKEVNCSSPADMDGIQKGLEPRKMYQY----GAVVTLECE-DGYMLEGSPQSQC 935
Score = 69.4 bits (169), Expect = 2e-12
Identities = 50/322 (15%), Positives = 78/322 (24%), Gaps = 70/322 (21%)
Query: 11 HCPAG-TFAGINQKTCTPCPRGFYQNNDRQGVCL------KCPM----------GTYTRE 53
C G C + + C CP G+
Sbjct: 30 SCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYR 89
Query: 54 EGSKAVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAA 113
G C + + C N+ G +
Sbjct: 90 HGDSVTFACKT--NFSMNGN----KSVWCQANNMWGPTRLPTCVSVFPLE-----CPALP 138
Query: 114 PARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGD 173
N S + C+ + L G+ ++ C ++G W
Sbjct: 139 MIHNGHHTSENVGSI------APGLSVTYSCESGYLLVGE-----KIINCLSSGKWSAVP 187
Query: 174 LRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQT 233
CE C GR +G R + F C + ++L G
Sbjct: 188 PTCEEARCKSLGRFPNGKVKEPP---------------ILRVGVTANFFCDEGYRLQG-- 230
Query: 234 DKNDNVVRCQA--NGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQF 291
RC G+ CE C P ++G + S V Y GS V +
Sbjct: 231 ---PPSSRCVIAGQGVAWTKMPVCEEIFCPSPPPILNGRHIGNSLANVSY----GSIVTY 283
Query: 292 GCN-----KPGYILINPRPITC 308
C+ +ILI + C
Sbjct: 284 TCDPDPEEGVNFILIGESTLRC 305
Score = 68.2 bits (166), Expect = 5e-12
Identities = 51/311 (16%), Positives = 78/311 (25%), Gaps = 55/311 (17%)
Query: 11 HCPAG-TFAGINQKTCTPCPRGFYQNNDRQGVCLKCPM------GTYT------REEGSK 57
C G G C +G + CP G + GS
Sbjct: 221 FCDEGYRLQGPPSSRCVIAGQGVAWTKMPVCEEIFCPSPPPILNGRHIGNSLANVSYGSI 280
Query: 58 AVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARN 117
C P G L C +S G CE + + P
Sbjct: 281 VTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTWSGPAPRCELSTSAVQCPHPQILRGR 340
Query: 118 FCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCE 177
Y + F C F L G +RC A G W+
Sbjct: 341 MVSGQKDRYTYN--------DTVIFACMFGFTLKG-----SKQIRCNAQGTWE-PSAPVC 386
Query: 178 GPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKND 237
C P ++G + + + + +S + C + L G +
Sbjct: 387 EKECQAPPNILNGQK-------------EDRHMVRFDPGTSIKYSCNPGYVLVG-----E 428
Query: 238 NVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPG 297
++C + G+W +C+ C GR + +V C G
Sbjct: 429 ESIQCTSEGVWTPPVPQCKVAACEATGRQLLTKPQHQFV---------RPDVNSSCG-EG 478
Query: 298 YILINPRPITC 308
Y L C
Sbjct: 479 YKLSGSVYQEC 489
Score = 57.1 bits (137), Expect = 1e-08
Identities = 37/238 (15%), Positives = 63/238 (26%), Gaps = 47/238 (19%)
Query: 20 INQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPC 79
+ T CP ++ + L Y+ +C P G+ + C
Sbjct: 760 LRSPPVTRCPNPEVKHGYK----LNKTHSAYS--HNDIVYVDCNP--GFIMNGSRVIR-C 810
Query: 80 LECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSS 139
N++ P K CP P N A + S
Sbjct: 811 --HTDNTWVPGVPTCIKKAFIGCP-------PPPKTPNGNHTGGNIARF------SPGMS 855
Query: 140 FFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQ 199
+ C + L G + ++ C G W C+ CS P +
Sbjct: 856 ILYSCDQGYLLVG-----EALLLCTHEGTWSQPAPHCKEVNCSSPADMDGIQKG------ 904
Query: 200 VRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEG 257
+Y + C+D + L G +CQ++ W+ C
Sbjct: 905 -------LEPRKMYQYGAVVTLECEDGYMLEG-----SPQSQCQSDHQWNPPLAVCRS 950
Score = 55.5 bits (133), Expect = 5e-08
Identities = 48/315 (15%), Positives = 85/315 (26%), Gaps = 59/315 (18%)
Query: 42 CLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEA 101
C T+ + + CG G Y +G V + E + C
Sbjct: 451 CEATGRQLLTKPQHQFVRPDVNSSCGEG-YKLSGSVYQECQGTIPWFMEIRLCKEITCPP 509
Query: 102 CPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQ-TDKNDNV 160
P + +F Y ++ + C + + + ++
Sbjct: 510 PPVIYNGAHTGSSLEDF----------------PYGTTVTYTCNPGPERGVEFSLIGEST 553
Query: 161 VRCQAN----GIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQ 216
+RC +N G W C+ + + V + ++ + Y Y
Sbjct: 554 IRCTSNDQERGTWSGPAPLCKLSLLAVQCSHVH----IANGYKISGKEAPY------FYN 603
Query: 217 SSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSY 276
+ F C F L G + +RC+A+ WD CE C + + +
Sbjct: 604 DTVTFKCYSGFTLKG-----SSQIRCKADNTWDPEIPVCEKETCQHVRQSLQELPAGSR- 657
Query: 277 EQVRYDDEQGSEVQFGCNKPGYILINPRPITCV---------REPECKIIKPLGLASGRI 327
V C GY L C + P CK+I I
Sbjct: 658 ---------VELVNTSCQ-DGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPP--PVI 705
Query: 328 PDSSINATSESPYLV 342
+ +L
Sbjct: 706 VNGKHTGMMAENFLY 720
Score = 30.1 bits (67), Expect = 3.0
Identities = 8/54 (14%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 260 CSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVREPE 313
C P ++G +++ + G+ +++ C+ + LI + + C+ + +
Sbjct: 3 CGSPPPILNG-RISYYSTPIAV----GTVIRYSCS-GTFRLIGEKSLLCITKDK 50
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 77.8 bits (191), Expect = 4e-15
Identities = 42/226 (18%), Positives = 65/226 (28%), Gaps = 50/226 (22%)
Query: 108 TYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG 167
T A + C + + G+F + + + C F C++ G
Sbjct: 1 TPWSLARPQGSCSLEGVEIKGGSFRLLQEGQALEYVCPSGFYPYP-----VQTRTCRSTG 55
Query: 168 IWDFGDLRCEGPV---------CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSS 218
W + + V C P +G + Y
Sbjct: 56 SWSTLKTQDQKTVRKAECRAIHCPRPHDFENG--------EYWPRSPYY------NVSDE 101
Query: 219 FFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV--CSDPGRPVDGYQVATSY 276
F C D + L G CQ NG W C+ CS+PG P+ +V + Y
Sbjct: 102 ISFHCYDGYTLRG-----SANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQY 156
Query: 277 EQVRYDDEQGSEVQFGCNKPGYILINPRPITCV-------REPECK 315
V + C+ G L + TC EP C+
Sbjct: 157 -------RLEDSVTYHCS-RGLTLRGSQRRTCQEGGSWSGTEPSCQ 194
Score = 45.5 bits (107), Expect = 6e-05
Identities = 28/173 (16%), Positives = 48/173 (27%), Gaps = 20/173 (11%)
Query: 121 VPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV 180
+P + G+ R + S + C L G CQ G W + C+
Sbjct: 145 IPIGTRKVGS--QYRLEDSVTYHCSRGLTLRG-----SQRRTCQEGGSWSGTEPSCQDSF 197
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
D + V +++ E + D + G+ + +G + +
Sbjct: 198 MYDTPQEVAEAFLSSLTETIEGVDAEDGH------GPGEQQKRKIVLDPSGSMN-----I 246
Query: 241 RCQANGIWDFGDLRCEGPVCSDPG--RPVDGYQVATSYEQVRYDDEQGSEVQF 291
+G G G V Y V Y V Y V+
Sbjct: 247 YLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKV 299
>2c8i_E CD55, complement decay-accelerating factor; picornavirus, DAF,
virus-receptor complex, antigen, blood group antigen,
complement pathway, GPI-anchor; 14.00A {Homo sapiens}
SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
Length = 316
Score = 74.2 bits (182), Expect = 1e-14
Identities = 39/268 (14%), Positives = 69/268 (25%), Gaps = 56/268 (20%)
Query: 61 ECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCR 120
C G + C + S + ++ CE + + +
Sbjct: 91 VITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPT------RLNSASLKQPY 144
Query: 121 VPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV 180
+ G + + C+ ++ + C N W C+
Sbjct: 145 ITQNYFPVG--------TVVEYECRPGYRREP---SLSPKLTCLQNLKWSTAVEFCKKKS 193
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
C +PG +G + ++ F C +KL G
Sbjct: 194 CPNPGEIRNGQIDVPG---------------GILFGATISFSCNTGYKLFGS-----TSS 233
Query: 241 RCQANG---IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPG 297
C +G W C C P + +G + Y V + CN G
Sbjct: 234 FCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGER-DHYGY----RQSVTYACN-KG 287
Query: 298 YILINPRPITCVR----------EPECK 315
+ +I I C PEC+
Sbjct: 288 FTMIGEHSIYCTVNNDEGEWSGPPPECR 315
>3o8e_B Membrane cofactor protein; short consensus repeat, complement
control protein, fiber KN virus-receptor interaction,
cell adhesion-immunity complex; HET: NAG; 2.84A {Homo
sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M*
Length = 252
Score = 72.7 bits (178), Expect = 2e-14
Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 34/195 (17%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG---IWDFGDLRCEGPVCSDPGRPVD 189
+ F C + + L G + ++ C+ G IW CE +C+ P + +
Sbjct: 82 TYEFGYQMHFICNEGYYLIG-----EEILYCELKGSVAIWSGKPPICEKVLCTPPPKIKN 136
Query: 190 GYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWD 249
G + E Y + + C + ++ + C N +W
Sbjct: 137 GKHTFSEVE-------------VFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVWS 183
Query: 250 FGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV 309
C+ C P +G Q++ ++ Y + V F C+ G+ L I C
Sbjct: 184 RAAPECKVVKCRFPVVE-NGKQISGFGKKFYY----KATVMFECD-KGFYLDGSDTIVCD 237
Query: 310 R-------EPECKII 317
P+C +
Sbjct: 238 SNSTWDPPVPKCLKV 252
Score = 66.1 bits (161), Expect = 3e-12
Identities = 37/199 (18%), Positives = 60/199 (30%), Gaps = 41/199 (20%)
Query: 135 RYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIW-DFGDLRCEGPVCSDPGRPVDGYQV 193
+ C+ + C N W D C C P++G
Sbjct: 21 EIGERVDYKCKKGYFYIP---PLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNG--- 74
Query: 194 ATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG---IWDF 250
Q + Y + F C + + L G + ++ C+ G IW
Sbjct: 75 -----QAVPANGTY------EFGYQMHFICNEGYYLIG-----EEILYCELKGSVAIWSG 118
Query: 251 GDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCN----KPGYILINPRPI 306
CE +C+ P + +G + E Y V + C+ + LI I
Sbjct: 119 KPPICEKVLCTPPPKIKNGKHTFSEVEVFEY----LDAVTYSCDPAPGPDPFSLIGESTI 174
Query: 307 TCV-------REPECKIIK 318
C PECK++K
Sbjct: 175 YCGDNSVWSRAAPECKVVK 193
>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of
complement pathway, regulator of complement; 2.2A {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB:
1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A
2qzh_A 2qzf_A
Length = 254
Score = 71.1 bits (174), Expect = 6e-14
Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 32/179 (17%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQ 192
+ + C+ ++ + C N W C+ C +PG +G
Sbjct: 86 YFPVGTVVEYECRPGYRREP---SLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQI 142
Query: 193 VATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG---IWD 249
+ ++ F C +KL G C +G W
Sbjct: 143 DVPG---------------GILFGATISFSCNTGYKLFG-----STSSFCLISGSSVQWS 182
Query: 250 FGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITC 308
C C P + +G + + Y V + CN G+ +I I C
Sbjct: 183 DPLPECREIYCPAPPQIDNGI-IQGERDHYGY----RQSVTYACN-KGFTMIGEHSIYC 235
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 72.8 bits (178), Expect = 1e-13
Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 45/206 (21%)
Query: 117 NFCRVPTPGAEYGNFLDTRYQSSFFFG------CQDTFKLAGQTDKNDNVVRCQANGIWD 170
+ C P ++ +S F G C + + + C+ + W
Sbjct: 1 DHCPAP-SQLPSAKPINLTDESMFPIGTYLLYECLPGYIKRQFS------ITCKQDSTWT 53
Query: 171 FGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLA 230
+ +C C P P +G + + S + C ++L
Sbjct: 54 SAEDKCIRKQCKTPSDPENGLVHVHT---------------GIEFGSRINYTCNQGYRLI 98
Query: 231 GQTDKNDNVVRC---QANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGS 287
G + C + WD CE C P +G +++ E Y G
Sbjct: 99 G-----SSSAVCVITDQSVDWDTEAPICEWIPCEIPPGIPNGDFFSSTREDFHY----GM 149
Query: 288 EVQFGCN-----KPGYILINPRPITC 308
V + CN K + L+ + C
Sbjct: 150 VVTYRCNTDARGKALFNLVGEPSLYC 175
Score = 56.2 bits (135), Expect = 2e-08
Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 26/175 (14%)
Query: 135 RYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVA 194
+ F C F + G + V CQ+ W+ C V + + G+Q
Sbjct: 218 SLRDIVEFRCHPGFIMKG-----ASSVHCQSLNKWEPELPSCFKGVICRLPQEMSGFQKG 272
Query: 195 TSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLR 254
++ + Y + C+D + L G + +CQ++G W+ L
Sbjct: 273 LGMKK------------EYYYGENVTLECEDGYTLEGSS-----QSQCQSDGSWN-PLLA 314
Query: 255 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV 309
+DP P D + K + +TCV
Sbjct: 315 KCVSRLADPEVPRDCGCKPCICTVPEVSSVF---IFPPKPKDVLTITLTPKVTCV 366
>2qy0_A Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
Length = 159
Score = 67.5 bits (164), Expect = 2e-13
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 21/146 (14%)
Query: 135 RYQSSFFFGCQDTFKLAGQTDKNDNVVR-CQANGIWDFGDLRCEGPVCSDPGRPVDGYQV 193
+++ F C+ ++L + CQ +G W RC+ C P +G
Sbjct: 25 QFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFR 84
Query: 194 ATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKN----DNVVRCQANGIWD 249
T+ Y++ + C + + + V C A GIW
Sbjct: 85 YTTTMG------------VNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWK 132
Query: 250 FGDLRCEGP----VCSDPGRPVDGYQ 271
+ P VC P PV+ Q
Sbjct: 133 NEQKGEKIPRCLPVCGKPVNPVEQRQ 158
Score = 48.2 bits (114), Expect = 8e-07
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 18/134 (13%)
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
C P + + Q ++ + F C+ ++L +
Sbjct: 5 CPQPKTLDEFTIIQNLQPQYQF-------------RDYFIATCKQGYQLIEGNQVLHSFT 51
Query: 241 R-CQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYI 299
CQ +G W RC+ C P +G T+ + + +Q+ C+ Y
Sbjct: 52 AVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMG---VNTYKARIQYYCH-EPYY 107
Query: 300 LINPRPITCVREPE 313
+ R + E
Sbjct: 108 KMQTRAGSRESEQG 121
Score = 44.0 bits (103), Expect = 2e-05
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKN----DNVVRCQANGIWDFGDLRCEGP----VCSDP 184
Y++ + C + + + V C A GIW + P VC P
Sbjct: 91 VNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPVCGKP 150
Query: 185 GRPVDGYQ 192
PV+ Q
Sbjct: 151 VNPVEQRQ 158
>3iyp_F Complement decay-accelerating factor; virus, receptor, complex,
echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo
sapiens}
Length = 381
Score = 70.5 bits (172), Expect = 4e-13
Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 42/200 (21%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQ 192
+ + C+ ++ + C N W C+ C +PG +G
Sbjct: 118 YFPVGTVVEYECRPGYRREP---SLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQI 174
Query: 193 VATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG---IWD 249
+ ++ F C +KL G C +G W
Sbjct: 175 DVPG---------------GILFGATISFSCNTGYKLFG-----STSSFCLISGSSVQWS 214
Query: 250 FGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV 309
C C P + +G + + Y V + CN G+ +I I C
Sbjct: 215 DPLPECREIYCPAPPQIDNGI-IQGERDHYGY----RQSVTYACN-KGFTMIGEHSIYCT 268
Query: 310 R----------EPECKIIKP 319
PEC+
Sbjct: 269 VNNDEGEWSGPPPECRGKSL 288
Score = 40.8 bits (95), Expect = 0.001
Identities = 20/192 (10%), Positives = 34/192 (17%), Gaps = 48/192 (25%)
Query: 121 VPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQAN---GIWDFGDLRCE 177
G G Y+ S + C F + G ++ + C N G W C
Sbjct: 230 QIDNGIIQGERDHYGYRQSVTYACNKGFTMIG-----EHSIYCTVNNDEGEWSGPPPECR 284
Query: 178 GPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKND 237
G + P + + + T
Sbjct: 285 GKSLTSKVPPTVQKPTTVN-----------------------VPTTEVSPTSQKTT---- 317
Query: 238 NVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPG 297
N P G + G+ +
Sbjct: 318 -TKTTTPNAQATRSTPVSRTTKHFHETTPNKGSGTTS-----------GTTRLLSGH-TC 364
Query: 298 YILINPRPITCV 309
+ L
Sbjct: 365 FTLTGLLGTLVT 376
>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR,
CCP, immune system; NMR {Rattus norvegicus}
Length = 320
Score = 69.3 bits (169), Expect = 6e-13
Identities = 52/332 (15%), Positives = 86/332 (25%), Gaps = 72/332 (21%)
Query: 11 HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLK--CPM----------GTYTREEGSKA 58
C G TC + Q VC++ C GS
Sbjct: 34 ECRPGYIKRQFSITC--EVNSVW--TSPQDVCIRKQCETPLDPQNGIVHVNTDIRFGSSI 89
Query: 59 VQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNF 118
C GY + + + ++ E P+ CE P+
Sbjct: 90 TYTCNE--GYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPS-------------- 133
Query: 119 CRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKN-DNVVRCQA----NGIWDFGD 173
+P N D Y + C + + + + C + G+W
Sbjct: 134 --IPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPP 191
Query: 174 LRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQT 233
+C P + V+ + + F CQD F + G
Sbjct: 192 PQCIELNKCTPPHVENAVIVSKNKSLFSL-------------RDMVEFRCQDGFMMKG-- 236
Query: 234 DKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGC 293
D+ V C++ W+ C + ++ G++V F C
Sbjct: 237 ---DSSVYCRSLNRWEPQLPSCFKVKSCGAFLGELPNGHVFVPQNLQL----GAKVTFVC 289
Query: 294 NKPGYILINPRPITCVR----------EPECK 315
N GY L CV P C+
Sbjct: 290 N-TGYQLKGNSSSHCVLDGVESIWNSSVPVCE 320
Score = 62.3 bits (151), Expect = 1e-10
Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 52/244 (21%)
Query: 119 CRVPTPGAEYGNFLDTRYQSSFFFG------CQDTFKLAGQTDKNDNVVRCQANGIWDFG 172
C P P Y ++ +S+F G C+ + + + C+ N +W
Sbjct: 5 CPAP-PLFPYAKPINPTDESTFPVGTSLKYECRPGYIKRQFS------ITCEVNSVWTSP 57
Query: 173 DLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQ 232
C C P P +G + D R+ SS + C + ++L G
Sbjct: 58 QDVCIRKQCETPLDPQNGIVHVNT---------------DIRFGSSITYTCNEGYRLIGS 102
Query: 233 TDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFG 292
+ + + WD CE C P +G + + E Y G V +
Sbjct: 103 SSAMC--IISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHY----GMVVTYQ 156
Query: 293 CN-----KPGYILINPRPITCV-----------REPECKIIKPLGLASGRIPDSSINATS 336
CN K + L+ I C P+C + + ++ I + +
Sbjct: 157 CNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTP--PHVENAVIVSKN 214
Query: 337 ESPY 340
+S +
Sbjct: 215 KSLF 218
>3sw0_X H factor 1, complement factor H; innate immune response, sushi
domains, cofactor in the inact of C3B, C3B, human
plasma, immune system; 1.80A {Homo sapiens}
Length = 188
Score = 66.1 bits (161), Expect = 1e-12
Identities = 27/175 (15%), Positives = 45/175 (25%), Gaps = 26/175 (14%)
Query: 135 RYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVA 194
+ C+ +++ G D V C + + C P +G
Sbjct: 25 PSGERVRYQCRSPYEMFG-----DEEVMCLNGNWTEPPQCKDSTGKCGPPPPIDNGDIT- 78
Query: 195 TSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLR 254
SS + CQ+ ++L G N NG W +
Sbjct: 79 ------------SFPLSVYAPASSVEYQCQNLYQLEG------NKRITCRNGQWS-EPPK 119
Query: 255 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV 309
C P + + + G V+F C GY L +
Sbjct: 120 CLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCK-RGYRLSSRSHTLRT 173
>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi
domain, human complement system, complement second
component C2; 1.80A {Homo sapiens}
Length = 223
Score = 66.1 bits (161), Expect = 2e-12
Identities = 37/228 (16%), Positives = 64/228 (28%), Gaps = 53/228 (23%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWD-------FGDLRCEGPVCSDPG 185
S + C + + C+++G W C+ C P
Sbjct: 20 GWAPGSLLTYSCPQGLYPSPAS------RLCKSSGQWQTPGATRSLSKAVCKPVRCPAPV 73
Query: 186 RPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQAN 245
+G + F C+D F L G V +C+ N
Sbjct: 74 SFENGIYT--------------PRLGSYPVGGNVSFECEDGFILRG-----SPVRQCRPN 114
Query: 246 GIWDFGDLRCEGPV--CSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINP 303
G+WD C+ C +PG + + + G +V++ C+ +L
Sbjct: 115 GMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGH-------GDKVRYRCS-SNLVLTGS 166
Query: 304 RPITCV-------REPECKIIK----PLGLASGRIPDSSINATSESPY 340
C EP C+ P +A S + +P
Sbjct: 167 SERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPT 214
Score = 60.3 bits (146), Expect = 2e-10
Identities = 29/149 (19%), Positives = 44/149 (29%), Gaps = 28/149 (18%)
Query: 121 VPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV 180
G + F C+D F L G V +C+ NG+WD C+
Sbjct: 74 SFENGIYTPRLGSYPVGGNVSFECEDGFILRG-----SPVRQCRPNGMWDGETAVCDNGA 128
Query: 181 --CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDN 238
C +PG + + + + + C L G +
Sbjct: 129 GHCPNPGISLGAVRTGFRF----------------GHGDKVRYRCSSNLVLTG-----SS 167
Query: 239 VVRCQANGIWDFGDLRCEGPVCSDPGRPV 267
CQ NG+W + C P D V
Sbjct: 168 ERECQGNGVWSGTEPICRQPYSYDFPEDV 196
Score = 43.4 bits (102), Expect = 8e-05
Identities = 21/154 (13%), Positives = 31/154 (20%), Gaps = 41/154 (26%)
Query: 179 PVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDN 238
P C G + S + C + +
Sbjct: 2 PSCPQNVNISGGTFTLSH---------------GWAPGSLLTYSCPQGLYPSPAS----- 41
Query: 239 VVRCQANGIWD-------FGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQF 291
C+++G W C+ C P +G G V F
Sbjct: 42 -RLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENG-IYTPRLGSYPV----GGNVSF 95
Query: 292 GCNKPGYILINPRPITCVRE-------PECKIIK 318
C G+IL C C
Sbjct: 96 ECE-DGFILRGSPVRQCRPNGMWDGETAVCDNGA 128
Score = 39.1 bits (91), Expect = 0.002
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 119 CRVPTPGAEYGNFL---DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLR 175
P PG G + + C L G + CQ NG+W +
Sbjct: 129 GHCPNPGISLGAVRTGFRFGHGDKVRYRCSSNLVLTG-----SSERECQGNGVWSGTEPI 183
Query: 176 CEGPVCSDPGRPV 188
C P D V
Sbjct: 184 CRQPYSYDFPEDV 196
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response,
innate immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 68.7 bits (167), Expect = 4e-12
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 30/184 (16%)
Query: 134 TRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQV 193
F+ C+ + L G +RC G W CE C D + +V
Sbjct: 725 FSPGQEVFYSCEPGYDLRGAA-----SMRCTPQGDWSPAAPTCEVKSCDDFMGQLLNGRV 779
Query: 194 ATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDL 253
+ + + F C + F+L G + V +W+
Sbjct: 780 LFPV--------------NLQLGAKVDFVCDEGFQLKGSS--ASYCVLAGMESLWNSSVP 823
Query: 254 RCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCN-----KPGYILINPRPITC 308
CE C P +G E + G V + C+ + LI I C
Sbjct: 824 VCEQIFCPSPPVIPNGRHTGKPLEVFPF----GKAVNYTCDPHPDRGTSFDLIGESTIRC 879
Query: 309 VREP 312
+P
Sbjct: 880 TSDP 883
Score = 68.7 bits (167), Expect = 5e-12
Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 35/217 (16%)
Query: 108 TYQPAAPARNFCRVPTPGAEYGNFL-----DTRYQSSFFFGCQDTFKLAGQTDKNDNVVR 162
+ P P + P P +G + F+ C+ ++ L G +
Sbjct: 1597 RWGPKLPHCSRVCQPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRG-----AASLH 1651
Query: 163 CQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFG 222
C G W RC C D + +V L+ + + F
Sbjct: 1652 CTPQGDWSPEAPRCTVKSCDDFLGQLPHGRVLLP--------------LNLQLGAKVSFV 1697
Query: 223 CQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYD 282
C + F+L G++ + V +W+ CE C +P ++G T + + Y
Sbjct: 1698 CDEGFRLKGRS--ASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTGTPFGDIPY- 1754
Query: 283 DEQGSEVQFGCN-----KPGYILINPRPITCVREPEC 314
G E+ + C+ + LI I C +P+
Sbjct: 1755 ---GKEISYACDTHPDRGMTFNLIGESSIRCTSDPQG 1788
Score = 68.3 bits (166), Expect = 6e-12
Identities = 49/257 (19%), Positives = 71/257 (27%), Gaps = 39/257 (15%)
Query: 55 GSKAVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAP 114
G+K C G+ + L + + PV C PA + P
Sbjct: 1691 GAKVSFVCDE--GFRLKGRSASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTGTP 1748
Query: 115 ARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDL 174
+ YG + Y TF L G++ Q NG+W
Sbjct: 1749 FGDI--------PYGKEI--SYACDTHPDRGMTFNLIGES-SIRCTSDPQGNGVWSSPAP 1797
Query: 175 RCEGPV---CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAG 231
RCE V C P + +G+ + + + C + L G
Sbjct: 1798 RCELSVPAACPHPPKIQNGHYIGGHVSL-------------YLPGMTISYICDPGYLLVG 1844
Query: 232 QTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQF 291
+ C GIW D C+ CS P + + Y G V
Sbjct: 1845 -----KGFIFCTDQGIWSQLDHYCKEVNCSFPLFMNGISKELEMKKVYHY----GDYVTL 1895
Query: 292 GCNKPGYILINPRPITC 308
C GY L C
Sbjct: 1896 KCE-DGYTLEGSPWSQC 1911
Score = 63.7 bits (154), Expect = 1e-10
Identities = 54/309 (17%), Positives = 81/309 (26%), Gaps = 58/309 (18%)
Query: 8 RCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCG 67
C+ C P G G + + GS C G
Sbjct: 1003 ECILSGNTAHWSTKPPICQRIPCGLPPTIAN-GDFISTNRENFH--YGSVVTYRCNL--G 1057
Query: 68 YGTYSPTGLV--PCLECPRNS-----YTGEPPVGGHKDCEACPANMFTYQPAAPARNFCR 120
LV P + C N ++G P + P N
Sbjct: 1058 SRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPP----------NVENGIL 1107
Query: 121 VPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV 180
V + + F CQ F + G V+CQA W+ C V
Sbjct: 1108 VSDNRSLF------SLNEVVEFRCQPGFVMKGP-----RRVKCQALNKWEPELPSCS-RV 1155
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
C P + G + + F+ C+ + L G +
Sbjct: 1156 CQPPPEILHGEHT-------------PSHQDNFSPGQEVFYSCEPGYDLRG-----AASL 1197
Query: 241 RCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYIL 300
C G W RC C D + +V + + G++V F C+ G+ L
Sbjct: 1198 HCTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFP-----LNLQLGAKVSFVCD-EGFRL 1251
Query: 301 INPRPITCV 309
CV
Sbjct: 1252 KGSSVSHCV 1260
Score = 62.9 bits (152), Expect = 2e-10
Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 30/186 (16%)
Query: 134 TRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQV 193
F+ C+ + L G +RC G W CE C D + +V
Sbjct: 275 FSPGQEVFYSCEPGYDLRG-----AASMRCTPQGDWSPAAPTCEVKSCDDFMGQLLNGRV 329
Query: 194 ATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDL 253
++ + + F C + F+L G + V +W+
Sbjct: 330 LFP--------------VNLQLGAKVDFVCDEGFQLKGSS--ASYCVLAGMESLWNSSVP 373
Query: 254 RCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCN-----KPGYILINPRPITC 308
CE C P +G E + G V + C+ + LI I C
Sbjct: 374 VCEQIFCPSPPVIPNGRHTGKPLEVFPF----GKAVNYTCDPHPDRGTSFDLIGESTIRC 429
Query: 309 VREPEC 314
+P+
Sbjct: 430 TSDPQG 435
Score = 60.2 bits (145), Expect = 2e-09
Identities = 46/275 (16%), Positives = 81/275 (29%), Gaps = 42/275 (15%)
Query: 40 GVCLKCPMGTYTREEGSKAVQECVPVCGYGT-YSPTGLVPCLECPRNSYTGEPPVGGHKD 98
G P G G + C P G ++ G + C + +
Sbjct: 1289 GRHTGTPSGDIP--YGKEISYTCDPHPDRGMTFNLIG-ESTIRCTSDPHGNGVWSSPAPR 1345
Query: 99 CEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKND 158
CE P +P E+ +S + C+ + +
Sbjct: 1346 CELSVRAGHCKTPEQFPFASPTIPINDFEF------PVGTSLNYECRPGYFGKMFS---- 1395
Query: 159 NVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSS 218
+ C N +W + C C P P +G + DT++ S+
Sbjct: 1396 --ISCLENLVWSSVEDNCRRKSCGPPPEPFNGMVHINT---------------DTQFGST 1438
Query: 219 FFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQ 278
+ C + F+L G + + N WD CE C P +G + +
Sbjct: 1439 VNYSCNEGFRLIGSP--STTCLVSGNNVTWDKKAPICEIISCEPPPTISNGDFYSNNRTS 1496
Query: 279 VRYDDEQGSEVQFGCN-----KPGYILINPRPITC 308
G+ V + C+ + + L+ R I C
Sbjct: 1497 FHN----GTVVTYQCHTGPDGEQLFELVGERSIYC 1527
Score = 60.2 bits (145), Expect = 2e-09
Identities = 48/259 (18%), Positives = 70/259 (27%), Gaps = 47/259 (18%)
Query: 55 GSKAVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAP 114
GS+ C GY + + + E P+ C P
Sbjct: 83 GSQIKYSCTK--GYRLIGSSSATCIISGDTVIWDNETPICDRIPCGLPP----------T 130
Query: 115 ARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQ-TDKNDNVVRCQAN----GIW 169
N + T + Y S + C + + C +N GIW
Sbjct: 131 ITNGDFISTNRENF------HYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIW 184
Query: 170 DFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKL 229
+C P P +G V N F CQ F +
Sbjct: 185 SGPAPQCIIPNKCTPPNVENGILV-------------SDNRSLFSLNEVVEFRCQPGFVM 231
Query: 230 AGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEV 289
G V+CQA W+ +L VC P + + + G EV
Sbjct: 232 KGP-----RRVKCQALNKWE-PELPSCSRVCQPPPDVLHAERTQRDKDNFSP----GQEV 281
Query: 290 QFGCNKPGYILINPRPITC 308
+ C PGY L + C
Sbjct: 282 FYSCE-PGYDLRGAASMRC 299
Score = 59.4 bits (143), Expect = 3e-09
Identities = 49/308 (15%), Positives = 80/308 (25%), Gaps = 55/308 (17%)
Query: 28 CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPV-CGYGTYSPTGLVPCLECPRNS 86
C GF C+ M + + +V C + C P G
Sbjct: 795 CDEGFQLKGSSASYCVLAGMESLW----NSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFP 850
Query: 87 Y---------TGEPPVGGHK-------DCEACPANMFTYQPAAPA--RNFCRVPTPGAEY 128
+ C + P + AP +
Sbjct: 851 FGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLF 910
Query: 129 GNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPV 188
S F G ++ + + C N +W C+ C P PV
Sbjct: 911 AKLKTQTNASDFPIGTSLKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPV 970
Query: 189 DGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG-- 246
+G + D + S + C +L G + C +G
Sbjct: 971 NGMVHVIT---------------DIQVGSRINYSCTTGHRLIG-----HSSAECILSGNT 1010
Query: 247 -IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCN-----KPGYIL 300
W C+ C P +G ++T+ E Y GS V + CN + + L
Sbjct: 1011 AHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHY----GSVVTYRCNLGSRGRKVFEL 1066
Query: 301 INPRPITC 308
+ I C
Sbjct: 1067 VGEPSIYC 1074
Score = 56.0 bits (134), Expect = 4e-08
Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 45/204 (22%)
Query: 119 CRVPTPGAEYGNFLDTRYQSSFFFG------CQDTFKLAGQTDKNDNVVRCQANGIWDFG 172
C P + + + F G C+ + + + C N +W
Sbjct: 2 CNAP-EWLPFARPTNLTDEFEFPIGTYLNYECRPGYSGRPFS------IICLKNSVWTGA 54
Query: 173 DLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQ 232
RC C +P PV+G ++ S + C ++L G
Sbjct: 55 KDRCRRKSCRNPPDPVNGMVHVIK---------------GIQFGSQIKYSCTKGYRLIG- 98
Query: 233 TDKNDNVVRCQANG---IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEV 289
+ C +G IWD C+ C P +G ++T+ E Y GS V
Sbjct: 99 ----SSSATCIISGDTVIWDNETPICDRIPCGLPPTITNGDFISTNRENFHY----GSVV 150
Query: 290 QFGCN-----KPGYILINPRPITC 308
+ CN + + L+ I C
Sbjct: 151 TYRCNPGSGGRKVFELVGEPSIYC 174
Score = 54.0 bits (129), Expect = 1e-07
Identities = 23/125 (18%), Positives = 35/125 (28%), Gaps = 23/125 (18%)
Query: 136 YQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVAT 195
+ + C + L G + C GIW D C+ CS P +
Sbjct: 1828 PGMTISYICDPGYLLVG-----KGFIFCTDQGIWSQLDHYCKEVNCSFPLFMNGISK--- 1879
Query: 196 SYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRC 255
+ Y C+D + L G +CQA+ WD +C
Sbjct: 1880 ----------ELEMKKVYHYGDYVTLKCEDGYTLEG-----SPWSQCQADDRWDPPLAKC 1924
Query: 256 EGPVC 260
Sbjct: 1925 TSRAH 1929
Score = 52.1 bits (124), Expect = 6e-07
Identities = 48/308 (15%), Positives = 78/308 (25%), Gaps = 55/308 (17%)
Query: 28 CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPV-CGYGTYSPTGLVPCLECPRNS 86
C GF C+ + +V C + C P G
Sbjct: 345 CDEGFQLKGSSASYCVLAG----MESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFP 400
Query: 87 Y---------TGEPPVGGHKD-------CEACPANMFTYQPAAP--ARNFCRVPTPGAEY 128
+ C + P + AP +
Sbjct: 401 FGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLF 460
Query: 129 GNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPV 188
S F G ++ + + C N +W C+ C P PV
Sbjct: 461 AKLKTQTNASDFPIGTSLKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPV 520
Query: 189 DGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG-- 246
+G + D + S + C +L G + C +G
Sbjct: 521 NGMVHVIT---------------DIQVGSRINYSCTTGHRLIGH-----SSAECILSGNA 560
Query: 247 -IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCN-----KPGYIL 300
W C+ C P +G ++T+ E Y GS V + CN + + L
Sbjct: 561 AHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHY----GSVVTYRCNPGSGGRKVFEL 616
Query: 301 INPRPITC 308
+ I C
Sbjct: 617 VGEPSIYC 624
Score = 49.4 bits (117), Expect = 3e-06
Identities = 48/296 (16%), Positives = 87/296 (29%), Gaps = 37/296 (12%)
Query: 28 CPRGFYQNNDRQGVCLKCPMGTYTREEGS-KAVQECVPVCGYGTYSPTGLVPCLECPRNS 86
C GF R+ C + E S V + P +G ++P+
Sbjct: 1125 CQPGFVMKGPRRVKCQAL--NKWEPELPSCSRVCQPPPEILHGEHTPSHQDNFSPGQEVF 1182
Query: 87 YTGEP--PVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFL---DTRYQSSFF 141
Y+ EP + G P ++ + A C +G L + + +
Sbjct: 1183 YSCEPGYDLRGAASLHCTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKVS 1242
Query: 142 FGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVR 201
F C + F+L G + + V +W+ CE C +P ++G T
Sbjct: 1243 FVCDEGFRLKGSSV--SHCVLVGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSG--- 1297
Query: 202 YDDEQYGNFLDTRYQSSFFFGCQDTFKLA-GQTDKNDNVVRCQANGIWD--------FGD 252
D Y + C ++ +RC ++ + +
Sbjct: 1298 ----------DIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSSPAPRCE 1347
Query: 253 LRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITC 308
L C P + + G+ + + C PGY I+C
Sbjct: 1348 LSVRAGHCKTPEQFPFASPT-IPINDFEFPV--GTSLNYECR-PGY-FGKMFSISC 1398
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase,
nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo
sapiens} PDB: 2z4f_A
Length = 178
Score = 63.5 bits (154), Expect = 7e-12
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 15/170 (8%)
Query: 311 EPECKIIKPLGLASGRIPDSSINATSE-----SPYLVRVNACSVPLIPGPRVQELLAEKN 365
C+ PLG++ G+IPD I A+S+ + R+++ P + +
Sbjct: 15 PAICR--YPLGMSGGQIPDEDITASSQWSESTAAKYGRLDSEEGDGAWCPEIPVEPDDLK 72
Query: 366 VRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRPTEIRFFYKQAESENFVVYFPNFNL 425
L + ++ L + + Y + + ++ +
Sbjct: 73 EFL-----QIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSR-DGTRWISWRNRHGK 126
Query: 426 TMRDPGNYGE-LAMITLPKFVQARFV-ILGIVSYMDNACLKFELMGCEEP 473
+ D + + + L + ARFV + + + N C++ EL GC
Sbjct: 127 QVLDGNSNPYDIFLKDLEPPIVARFVRFIPVTDHSMNVCMRVELYGCVWL 176
>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_A
Length = 155
Score = 61.5 bits (149), Expect = 2e-11
Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 19/139 (13%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVR-CQANGIWDFGDLRCEGPVCSDPGRPVDGY 191
++ C +K+ + D C +G W C+ C PG G
Sbjct: 25 KYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGL 84
Query: 192 QVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFG 251
++ + T Y+S + CQ+ + N + C A G+W
Sbjct: 85 ITFSTRNNL------------TTYKSEIKYSCQEPYYKMLN--NNTGIYTCSAQGVWMNK 130
Query: 252 DLRCEGP----VCSDPGRP 266
L P VC P
Sbjct: 131 VLGRSLPTCLPVCGLPKFS 149
Score = 52.7 bits (126), Expect = 2e-08
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 20/136 (14%)
Query: 176 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDK 235
G C + PV G ++ +Y ++ C +K+ +
Sbjct: 3 MTGNECPELQPPVHG--------KIEPSQAKY------FFKDQVLVSCDTGYKVLKDNVE 48
Query: 236 NDNVVR-CQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCN 294
D C +G W C+ C PG G ++ + SE+++ C
Sbjct: 49 MDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTT---YKSEIKYSCQ 105
Query: 295 KPGYILIN--PRPITC 308
+P Y ++N TC
Sbjct: 106 EPYYKMLNNNTGIYTC 121
>2uwn_A H factor 1, human complement factor H; alternative splicing,
sucrose octasulphate, AGE-related macular degeneration,
complement alternate pathway; HET: SCR; 2.35A {Homo
sapiens} PDB: 2v8e_A* 2ic4_A 2w80_A 2w81_A 2jgw_A 2jgx_A
Length = 187
Score = 61.9 bits (150), Expect = 3e-11
Identities = 25/196 (12%), Positives = 50/196 (25%), Gaps = 38/196 (19%)
Query: 127 EYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGR 186
+ + + C + F+ + + C +G W + C C P
Sbjct: 21 MRRPYFPVAVGKYYSYYCDEHFETPSG--SYWDHIHCTQDG-WS-PAVPCL-RKCYFP-Y 74
Query: 187 PVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG 246
+GY + ++ S C + L
Sbjct: 75 LENGY--------NQNHGRKF------VQGKSIDVACHPGYALPK-----AQTTVTCMEN 115
Query: 247 IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRP- 305
W CS ++ ++ S + ++ C GY+ +
Sbjct: 116 GWSPTPRCIRVKTCSKSSIDIENGFISESQYTYAL----KEKAKYQCK-LGYVTADGETS 170
Query: 306 --ITCVR-----EPEC 314
ITC + +P C
Sbjct: 171 GSITCGKDGWSAQPTC 186
Score = 44.5 bits (105), Expect = 3e-05
Identities = 23/223 (10%), Positives = 47/223 (21%), Gaps = 46/223 (20%)
Query: 27 PCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLECPRNS 86
PC ++ ++ P G C + T S + + C ++
Sbjct: 5 PCDYPDIKHGGLYHENMRRPYFPVA--VGKYYSYYCDE--HFETPSGS-YWDHIHCTQDG 59
Query: 87 YTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQD 146
++ P C G + S C
Sbjct: 60 WSPAVPC-----LRKCY---------------FPYLENGYNQNHGRKFVQGKSIDVACHP 99
Query: 147 TFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQ 206
+ L W CS ++ ++ S +
Sbjct: 100 GYALPK-----AQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKE-- 152
Query: 207 YGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWD 249
+ C+ + A + + C +G W
Sbjct: 153 -----------KAKYQCKLGYVTAD--GETSGSITCGKDG-WS 181
>1rid_A Complement control protein; regulation, SCR, immune system; HET:
IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1
g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A
1vvc_A 1vvd_A 1vve_A
Length = 244
Score = 63.4 bits (154), Expect = 3e-11
Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 51/228 (22%)
Query: 119 CRVPT--PGAEYGNFLDTRYQSSFFFG------CQDTFKLAGQTDKNDNVVRCQANGIWD 170
C +P+ ++ N ++T +++ G C ++ + + G
Sbjct: 2 CTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQK-----MGPIYAKCTGTGW 56
Query: 171 FGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLA 230
+C C P +G + + SS + C + L
Sbjct: 57 TLFNQCIKRRCPSPRDIDNGQLDIGGVD----------------FGSSITYSCNSGYHLI 100
Query: 231 GQTDKNDNVVRCQA----NGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQG 286
G ++ C+ + +W+ CE C P +G + + G
Sbjct: 101 G-----ESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNG-RHNGYEDFYTD----G 150
Query: 287 SEVQFGCNKPGYILINPRPITCVR-----EPECKIIK--PLGLASGRI 327
S V + CN GY LI + C P C+I+K +++G +
Sbjct: 151 SVVTYSCN-SGYSLIGNSGVLCSGGEWSDPPTCQIVKCPHPTISNGYL 197
Score = 60.7 bits (147), Expect = 2e-10
Identities = 35/180 (19%), Positives = 55/180 (30%), Gaps = 36/180 (20%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQA----NGIWDFGDLRCEGPVCSDPGRPV 188
+ SS + C + L G ++ C+ + +W+ CE C P
Sbjct: 82 GVDFGSSITYSCNSGYHLIG-----ESKSYCELGSTGSMVWNPEAPICESVKCQSPPSIS 136
Query: 189 DGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIW 248
+G + ++ Y S + C + L G ++ V C G W
Sbjct: 137 NG--------RHNGYEDFY------TDGSVVTYSCNSGYSLIG-----NSGVLCS-GGEW 176
Query: 249 DFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITC 308
C+ C P +GY + Y V F C GY L TC
Sbjct: 177 S-DPPTCQIVKCPHPTIS-NGYLSSGFKRSYSY----NDNVDFKCK-YGYKLSGSSSSTC 229
Score = 44.5 bits (105), Expect = 5e-05
Identities = 20/115 (17%), Positives = 30/115 (26%), Gaps = 26/115 (22%)
Query: 135 RYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVA 194
S + C + L G ++ V C G W C+ C P
Sbjct: 148 TDGSVVTYSCNSGYSLIG-----NSGVLCS-GGEWS-DPPTCQIVKCPHPTISNGYLS-- 198
Query: 195 TSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWD 249
G Y + F C+ +KL+G + C W
Sbjct: 199 ------------SGFKRSYSYNDNVDFKCKYGYKLSG-----SSSSTCSPGNTWK 236
Score = 32.2 bits (73), Expect = 0.42
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 119 CRVPTP---GAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWD 170
C PT G Y + F C+ +KL+G + C W
Sbjct: 187 CPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSG-----SSSSTCSPGNTWK 236
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 65.9 bits (160), Expect = 3e-11
Identities = 46/288 (15%), Positives = 84/288 (29%), Gaps = 57/288 (19%)
Query: 23 KTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLEC 82
+ C P L T EG++A+ +C P GY + + C
Sbjct: 1 EDCNELPPRRN------TEILTGSWSDQTYPEGTQAIYKCRP--GYRSLGNV----IMVC 48
Query: 83 PRNSYTGEPPVGGHKDCEA--CPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSF 140
+ + P+ C+ C P + Y
Sbjct: 49 RKGEWVALNPLRK---CQKRPCGH------PGDTPFGTFTLTGGN-------VFEYGVKA 92
Query: 141 FFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQV 200
+ C + ++L G+ + R W CE C P +G V+++ E
Sbjct: 93 VYTCNEGYQLLGEIN-----YRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPD 147
Query: 201 RYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVC 260
R + + + F C +K+ G D + C +G W +C +
Sbjct: 148 R----------EYHFGQAVRFVCNSGYKIEG-----DEEMHCSDDGFWSKEKPKCV-EIS 191
Query: 261 SDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITC 308
++G ++ ++ Q+ CN GY C
Sbjct: 192 CKSPDVINGSPISQKIIY-----KENERFQYKCN-MGYEYSERGDAVC 233
Score = 63.2 bits (153), Expect = 2e-10
Identities = 41/292 (14%), Positives = 78/292 (26%), Gaps = 43/292 (14%)
Query: 28 CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVP---------VCGYGTYSPTGLVP 78
C G+ + V C ++ V+ C +
Sbjct: 398 CHPGYALPKAQTTVT--CMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKA 455
Query: 79 CLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQS 138
+C T + C + ++ QP V +F +
Sbjct: 456 KYQCKLGYVTADGET---SGSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLND 512
Query: 139 SFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYE 198
+ + C D ++ C C P V +
Sbjct: 513 TLDYECHDGYESNT----GSTTGSIVCGYNGWSDLPICYERECELPKIDVHLV---PDRK 565
Query: 199 QVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIW-DFGDLRCEG 257
+ +Y + F C+ F + G N V+C G+ D + +
Sbjct: 566 KDQY-----------KVGEVLKFSCKPGFTIVGP-----NSVQCYHFGLSPDLPICKEQV 609
Query: 258 PVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV 309
C P ++G + E+ + V++ CN P +++ P I CV
Sbjct: 610 QSCGPPPELLNGNVKEKTKEEYGH----SEVVEYYCN-PRFLMKGPNKIQCV 656
Score = 63.2 bits (153), Expect = 2e-10
Identities = 32/211 (15%), Positives = 58/211 (27%), Gaps = 29/211 (13%)
Query: 102 CPANMFTYQPAAPARNFCRVPTP---GAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKND 158
C + +T +P + PT + C+ +++ G D
Sbjct: 1014 CINSRWTGRPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFG-----D 1068
Query: 159 NVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSS 218
V C + + C P +G + SS
Sbjct: 1069 EEVMCLNGNWTEPPQCKDSTGKCGPPPPIDNGDITSFPLSV-------------YAPASS 1115
Query: 219 FFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQ 278
+ CQ+ ++L G + + C+ NG W +C P + +
Sbjct: 1116 VEYQCQNLYQLEG-----NKRITCR-NGQWS-EPPKCLHPCVISREIMENYNIALRWTAK 1168
Query: 279 VRYDDEQGSEVQFGCNKPGYILINPRPITCV 309
+ G V+F C GY L +
Sbjct: 1169 QKLYSRTGESVEFVCK-RGYRLSSRSHTLRT 1198
Score = 62.5 bits (151), Expect = 3e-10
Identities = 51/309 (16%), Positives = 86/309 (27%), Gaps = 57/309 (18%)
Query: 28 CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLECPR--- 84
C F R + C G +T+ + +CV + + L+ E +
Sbjct: 701 CSESFTMIGHRS---ITCIHGVWTQ------LPQCVAIDKLKKCKSSNLIILEEHLKNKK 751
Query: 85 ----NSYTGEPPVGGHKDCEACPAN----MFTYQPAAPARNFCRVPTP--GAEYGNFLDT 134
NS G N A + P L+
Sbjct: 752 EFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNY 811
Query: 135 RYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVA 194
R CQ+ + + + C+ +G W L E CS P + G +
Sbjct: 812 RDGEKVSVLCQENYLIQE-----GEEITCK-DGRWQSIPLCVEKIPCSQPPQIEHGTINS 865
Query: 195 TSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLR 254
+ Q Y + + + C+ F+++ + N C +
Sbjct: 866 SRSSQESY-----------AHGTKLSYTCEGGFRISEE-----NETTCYMGKWSS--PPQ 907
Query: 255 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVRE--- 311
CEG C P G + + G EV + C G+ + P C+ E
Sbjct: 908 CEGLPCKSPPEISHGV-----VAHMSDSYQYGEEVTYKCF-EGFGIDGPAIAKCLGEKWS 961
Query: 312 --PECKIIK 318
P C
Sbjct: 962 HPPSCIKTD 970
Score = 62.1 bits (150), Expect = 4e-10
Identities = 32/215 (14%), Positives = 57/215 (26%), Gaps = 37/215 (17%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQ 192
+Y + C + F + G + W C C +
Sbjct: 930 SYQYGEEVTYKCFEGFGIDGPA------IAKCLGEKWS-HPPSCIKTDCLSLPSFENAIP 982
Query: 193 VATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGD 252
+ + + + C +K+ G + V C N W G
Sbjct: 983 MGEKKDVY-------------KAGEQVTYTCATYYKMDGA-----SNVTCI-NSRWT-GR 1022
Query: 253 LRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVR-- 310
C C +P + Y V+ + G V++ C Y + + C+
Sbjct: 1023 PTCRDTSCVNPPTVQNAYIVSRQMSKYPS----GERVRYQCR-SPYEMFGDEEVMCLNGN 1077
Query: 311 ---EPECKIIKPLGLASGRIPDSSINATSESPYLV 342
P+CK I + I + S Y
Sbjct: 1078 WTEPPQCKDSTGKCGPPPPIDNGDITSFPLSVYAP 1112
Score = 58.6 bits (141), Expect = 4e-09
Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 30/188 (15%)
Query: 121 VPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPV 180
G + Y S F C ++F + G + C +G+W +C
Sbjct: 678 ELEHGWAQLSSPPYYYGDSVEFNCSESFTMIG-----HRSITCI-HGVWT-QLPQCVAID 730
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
+ + + + + F ++ G K +
Sbjct: 731 KLKKCKSSNLIILEEHL----------------KNKKEFDHNSNIRYRCRG---KEGWIH 771
Query: 241 RCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYIL 300
NG WD ++ C P + Y D G +V C Y++
Sbjct: 772 TVCINGRWD-PEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRD--GEKVSVLCQ-ENYLI 827
Query: 301 INPRPITC 308
ITC
Sbjct: 828 QEGEEITC 835
Score = 54.0 bits (129), Expect = 1e-07
Identities = 55/326 (16%), Positives = 92/326 (28%), Gaps = 72/326 (22%)
Query: 11 HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLK--CPM------GTYTREEGSKAV--Q 60
C G + + C +G + + C K C GT+T G+
Sbjct: 33 KCRPG-YRSLGNVIMV-CRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGV 90
Query: 61 ECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEA--CPANMFTYQPAAP--AR 116
+ V C G Y G + EC + +T + P+ CE C AP +
Sbjct: 91 KAVYTCNEG-YQLLGEINYRECDTDGWTNDIPI-----CEVVKCLP------VTAPENGK 138
Query: 117 NFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRC 176
P EY + + F C +K+ G D + C +G W +C
Sbjct: 139 IVSSAMEPDREY------HFGQAVRFVCNSGYKIEG-----DEEMHCSDDGFWSKEKPKC 187
Query: 177 EGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKN 236
+ ++G ++ + F + C ++ +
Sbjct: 188 V-EISCKSPDVINGSPISQKII--------------YKENERFQYKCNMGYEYSE----- 227
Query: 237 DNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKP 296
C +G CE D +G Y +R G E+ + C
Sbjct: 228 RGDAVCTESGWRPLP--SCE-EKSCDNPYIPNGD-----YSPLRIKHRTGDEITYQCRNG 279
Query: 297 GYILINPRPITCVRE-----PECKII 317
Y C P C +
Sbjct: 280 FYPATRGNTAKCTSTGWIPAPRCTLK 305
Score = 50.5 bits (120), Expect = 2e-06
Identities = 37/334 (11%), Positives = 75/334 (22%), Gaps = 46/334 (13%)
Query: 20 INQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPC 79
+ + C F + + C ++ P G G
Sbjct: 331 VGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYF-PYLENGYNQNHG-RKF 388
Query: 80 LECPRNSYTGEP---PVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDT-- 134
++ P C N ++ P C + E G ++
Sbjct: 389 VQGKSIDVACHPGYALPKAQTTVT-CMENGWSPTPRCIRVKTCSKSSIDIENGFISESQY 447
Query: 135 --RYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQ 192
+ + C+ + A G + C P
Sbjct: 448 TYALKEKAKYQCKLGYVTAD-----GETSGSIRCGKDGWSAQPTCIKSCDIPVFMNART- 501
Query: 193 VATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGD 252
+F + + + C D ++
Sbjct: 502 --------------KNDFTWFKLNDTLDYECHDGYESNT----GSTTGSIVCGYNGWSDL 543
Query: 253 LRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV--- 309
C C P V +Q + G ++F C PG+ ++ P + C
Sbjct: 544 PICYERECELPKIDVHL-VPDRKKDQYKV----GEVLKFSCK-PGFTIVGPNSVQCYHFG 597
Query: 310 ---REPECKIIKPLGLASGRIPDSSINATSESPY 340
P CK + + ++ ++ Y
Sbjct: 598 LSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEY 631
Score = 45.1 bits (106), Expect = 8e-05
Identities = 26/286 (9%), Positives = 52/286 (18%), Gaps = 53/286 (18%)
Query: 24 TCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLECP 83
CT P + + G C + T S + + C
Sbjct: 301 RCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDE--HFETPSGSYW-DHIHCT 357
Query: 84 RNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSFFFG 143
++ ++ P C G + S
Sbjct: 358 QDGWSPAVPC-----LRKCY---------------FPYLENGYNQNHGRKFVQGKSIDVA 397
Query: 144 CQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYD 203
C + L W RC +
Sbjct: 398 CHPGYALPK-----AQTTVTCMENGWS-PTPRCIRVKTCSKSSI------DIENGFISES 445
Query: 204 DEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDP 263
Y + + C+ + A G + C P
Sbjct: 446 QYTY------ALKEKAKYQCKLGYVTAD-----GETSGSIRCGKDGWSAQPTCIKSCDIP 494
Query: 264 GRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV 309
+ ++ ++ + + C+ GY +
Sbjct: 495 VFMNARTKNDFTWFKL------NDTLDYECH-DGYESNTGSTTGSI 533
>2xrb_A Complement regulatory protein CRRY; immune system, immunology;
2.50A {Rattus norvegicus} PDB: 2xrd_A
Length = 290
Score = 62.0 bits (150), Expect = 1e-10
Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 30/194 (15%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQ 192
D R+ SS + C + ++L G + + + WD CE C P +G
Sbjct: 115 DIRFGSSITYTCNEGYRLIGSSSAMC--IISDQSVAWDAEAPICESIPCEIPPSIPNGDF 172
Query: 193 VATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQA----NGIW 248
+ + E Y YQ + + F L G + + C + G+W
Sbjct: 173 FSPNREDFHYGMV-------VTYQCNTDARGKKLFNLVG-----EPSIHCTSIDGQVGVW 220
Query: 249 DFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITC 308
+C P + V+ + V+F C G+++ + C
Sbjct: 221 SGPPPQCIELNKCTPPHVENAVIVSKNKSLFSL----RDMVEFRCQ-DGFMMKGDSSVYC 275
Query: 309 VR-------EPECK 315
P C
Sbjct: 276 RSLNRWEPQLPSCA 289
Score = 61.2 bits (148), Expect = 2e-10
Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 52/244 (21%)
Query: 119 CRVPTPGAEYGNFLDTRYQSSFFFG------CQDTFKLAGQTDKNDNVVRCQANGIWDFG 172
C P P Y ++ +S+F G C+ + + + C+ N +W
Sbjct: 38 CPAP-PLFPYAKPINPTDESTFPVGTSLKYECRPGYIKRQFS------ITCEVNSVWTSP 90
Query: 173 DLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQ 232
C C P P +G + D R+ SS + C + ++L G
Sbjct: 91 QDVCIRKQCETPLDPQNGIVHVNT---------------DIRFGSSITYTCNEGYRLIGS 135
Query: 233 TDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFG 292
+ + + WD CE C P +G + + E Y G V +
Sbjct: 136 SSAMC--IISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHY----GMVVTYQ 189
Query: 293 CN-----KPGYILINPRPITCVRE-----------PECKIIKPLGLASGRIPDSSINATS 336
CN K + L+ I C P+C + + ++ I + +
Sbjct: 190 CNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTP--PHVENAVIVSKN 247
Query: 337 ESPY 340
+S +
Sbjct: 248 KSLF 251
Score = 45.0 bits (106), Expect = 3e-05
Identities = 36/213 (16%), Positives = 57/213 (26%), Gaps = 51/213 (23%)
Query: 55 GSKAVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAP 114
GS C GY + + + ++ E P+ CE P+
Sbjct: 119 GSSITYTCNE--GYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPS---------- 166
Query: 115 ARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQD------TFKLAGQTDKNDNVVRCQA--- 165
+P N D Y + C F L G + + C +
Sbjct: 167 ------IPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVG-----EPSIHCTSIDG 215
Query: 166 -NGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQ 224
G+W +C P + V N + F CQ
Sbjct: 216 QVGVWSGPPPQCIELNKCTPPHVENAVIV-------------SKNKSLFSLRDMVEFRCQ 262
Query: 225 DTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEG 257
D F + G D+ V C++ W+ C
Sbjct: 263 DGFMMKG-----DSSVYCRSLNRWEPQLPSCAA 290
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system;
NMR {Homo sapiens}
Length = 133
Score = 54.5 bits (131), Expect = 3e-09
Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 40/154 (25%)
Query: 176 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDK 235
C P P+D T ++ ++ + C + + T
Sbjct: 3 CGPPPTLSFAAPMDITLTETRFK----------------TGTTLKYTCLPGYVRSHST-- 44
Query: 236 NDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDG-YQVATSYEQVRYDDEQGSEVQFGCN 294
+ C ++G W + C C PG +G ++ T GS+++F C+
Sbjct: 45 --QTLTCNSDGEWV-YNTFCIYKRCRHPGELRNGQVEIKTDL-------SFGSQIEFSCS 94
Query: 295 KPGYILINPRPITCV----------REPECKIIK 318
G+ LI C P+C+I++
Sbjct: 95 -EGFFLIGSTTSRCEVQDRGVGWSHPLPQCEILE 127
Score = 46.0 bits (109), Expect = 3e-06
Identities = 22/135 (16%), Positives = 38/135 (28%), Gaps = 28/135 (20%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQ 192
+ ++ + C + + T + C ++G W + C C PG +G
Sbjct: 23 RFKTGTTLKYTCLPGYVRSHST----QTLTCNSDGEWV-YNTFCIYKRCRHPGELRNGQV 77
Query: 193 VATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG---IWD 249
+ D + S F C + F L G RC+ W
Sbjct: 78 EIKT---------------DLSFGSQIEFSCSEGFFLIG-----STTSRCEVQDRGVGWS 117
Query: 250 FGDLRCEGPVCSDPG 264
+CE
Sbjct: 118 HPLPQCEILEHHHHH 132
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood
coagulation, calcium, DIS mutation, disulfide bond,
glycoprotein, hemophilia; 1.07A {Homo sapiens} PDB:
3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Length = 159
Score = 54.5 bits (131), Expect = 6e-09
Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 38/177 (21%)
Query: 312 PECKIIKPLGLASGRIPDSSINATSE--------SPYLVRVNA-------CSVPLIPGPR 356
C PLG+ S I D+ I A+S SP R++ P
Sbjct: 3 NSC--SMPLGMESKAISDAQITASSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPKEW 60
Query: 357 VQ-ELLAEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRPTEIRFFYKQAESEN 415
+Q + V + +GV + E Q +
Sbjct: 61 LQVDFQKTMKVT------------------GVTTQGVKSLLTSMYVKEFLISSSQ-DGHQ 101
Query: 416 FVVYFPN-FNLTMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGCE 471
+ ++F N + + + +L + R++ + S++ L+ E++GCE
Sbjct: 102 WTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSWVHQIALRMEVLGCE 158
>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1
Length = 128
Score = 53.7 bits (129), Expect = 7e-09
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 35/147 (23%)
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
C P + ++ T + +S + C+ + + +
Sbjct: 6 CQAPDHFLFA-KLKTQTTASDFP-----------IGTSLKYECRPEYYGRPFS------I 47
Query: 241 RCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYIL 300
C N +W C+ C P PV+G + QV GS + + C G+ L
Sbjct: 48 TCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQV------GSRITYSCT-TGHRL 100
Query: 301 INPRPITCV----------REPECKII 317
I C+ + P C+ I
Sbjct: 101 IGHSSAECILSGNTAHWSTKPPICQRI 127
Score = 46.7 bits (111), Expect = 2e-06
Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 33/138 (23%)
Query: 115 ARNFCRVPTPGAEYGNFLDTRYQSSFFFG------CQDTFKLAGQTDKNDNVVRCQANGI 168
A C+ P + S F G C+ + + + C N +
Sbjct: 2 AEAHCQAP-DHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGRPFS------ITCLDNLV 54
Query: 169 WDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFK 228
W C+ C P PV+G + D + S + C +
Sbjct: 55 WSSPKDVCKRKSCKTPPDPVNGMVHVIT---------------DIQVGSRITYSCTTGHR 99
Query: 229 LAGQTDKNDNVVRCQANG 246
L G + C +G
Sbjct: 100 LIG-----HSSAECILSG 112
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant,
anti- coagulant, membrane binding, phosphatidyl-serine
binding; 1.67A {Bos taurus} PDB: 2pqs_A
Length = 158
Score = 53.4 bits (128), Expect = 1e-08
Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 41/175 (23%)
Query: 318 KPLGLASGRIPDSSINATSE-----------SPYLVRVNA-------CSVPLIPGPRVQ- 358
+PLGL IP+ I A+S PY R++ + +Q
Sbjct: 3 EPLGLKDNTIPNKQITASSYYKTWGLSAFSWFPYYARLDNQGKFNAWTAQTNSASEWLQI 62
Query: 359 ELLAEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRPTEIRFFYKQAESENFVV 418
+L ++K V I+ +G + R Y + +
Sbjct: 63 DLGSQKRVT------------------GIITQGARDFGHIQYVAAYRVAYGD-DGVTWTE 103
Query: 419 YFPNFNL---TMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGC 470
Y + QARFV + V++ + L+ EL+GC
Sbjct: 104 YKDPGASESKIFPGNMDNNSHKKNIFETPFQARFVRIQPVAWHNRITLRVELLGC 158
>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain,
regulator of C activation, C3D, immune system; 1.52A
{Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A
3kzj_A 2xqw_C
Length = 129
Score = 51.9 bits (124), Expect = 2e-08
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 21/134 (15%)
Query: 176 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDK 235
E C P +G TS+ Y SS + CQ+ ++L G
Sbjct: 2 AEFGKCGPPPPIDNGD--ITSFPLSVY-----------APASSVEYQCQNLYQLEGN--- 45
Query: 236 NDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNK 295
+ C+ NG W +C P + + + G V+F C
Sbjct: 46 --KRITCR-NGQWS-EPPKCLHPCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCK- 100
Query: 296 PGYILINPRPITCV 309
GY L +
Sbjct: 101 RGYRLSSRSHTLRT 114
Score = 35.4 bits (81), Expect = 0.016
Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 26/125 (20%)
Query: 136 YQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVAT 195
SS + CQ+ ++L G + C+ NG W +C P +
Sbjct: 28 PASSVEYQCQNLYQLEGN-----KRITCR-NGQWS-EPPKCLHPCVISREIMENYNI--- 77
Query: 196 SYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRC 255
+R+ +Q R S F C+ ++L+ +
Sbjct: 78 ---ALRWRAKQKLYS---RTGESVEFVCKRGYRLSS-----RSHTLRTTCWDGKL----- 121
Query: 256 EGPVC 260
E P C
Sbjct: 122 EYPTC 126
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune
system-transferase complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 351
Score = 54.8 bits (131), Expect = 4e-08
Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 28/188 (14%)
Query: 312 PECKIIKPLGLASGRIPDSSINATSE-----SPYLVRVNACSVPLIPGPRVQELLAEKNV 366
+C+ LG+ IPDS I+A+S + R+ + P E+
Sbjct: 4 AKCR--YALGMQDRTIPDSDISASSSWSDSTAARHSRLESSDGDGAWCPAGSVFPKEEEY 61
Query: 367 RLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRP------TEIRFFYKQAESENFVVY- 419
++ R LV V T R Y + + ++ +
Sbjct: 62 LQVDLQRLH------------LVALVGTQGRHAGGLGKEFSRSYRLRYSR-DGRRWMGWK 108
Query: 420 FPNFNLTMRDPGNYGELAMITLPKFVQARFV-ILGIVSYMDNACLKFELMGCEEPKVEPL 478
+ + + + L + AR V + + CL+ EL GC
Sbjct: 109 DRWGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCLRVELYGCLWRDGLLS 168
Query: 479 LGYDYGYS 486
G +
Sbjct: 169 YTAPVGQT 176
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family,
calcium- independent, blood clotting; 1.87A {Homo
sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Length = 160
Score = 51.4 bits (123), Expect = 7e-08
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 39/174 (22%)
Query: 318 KPLGLASGRIPDSSINATSE---------SPYLVRVNA-------CSVPLIPGPRVQ-EL 360
PLG+ +G+I + I A+S P+ R+NA + ++ +L
Sbjct: 4 TPLGMENGKIENKQITASSFKKSWWGDYWEPFRARLNAQGRVNAWQAKANNNKQWLEIDL 63
Query: 361 LAEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRPTEIRFFYKQAESENFVVYF 420
L K + AI+ +G + Y + + + Y
Sbjct: 64 LKIKKIT------------------AIITQGCKSLSSEMYVKSYTIHYSE-QGVEWKPYR 104
Query: 421 PNFNLTMR---DPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGCE 471
++ + N + +RF+ + ++ + L+ EL GC+
Sbjct: 105 LKSSMVDKIFEGNTNTKGHVKNFFNPPIISRFIRVIPKTWNQSITLRLELFGCD 158
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 53.2 bits (128), Expect = 1e-07
Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 17/133 (12%)
Query: 136 YQSSFFFGCQDTFKLAGQTDKNDN-VVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVA 194
+ SF C+ ++L + CQ +G WD C C P G
Sbjct: 37 LKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEY 96
Query: 195 TSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLR 254
+ V T Y++ + C++TF ND C+A+G W
Sbjct: 97 ITGPGV------------TTYKAVIQYSCEETFY---TMKVNDGKYVCEADGFWTSSKGE 141
Query: 255 CEGPVCSDP-GRP 266
PVC G
Sbjct: 142 KSLPVCEPVCGLS 154
Score = 44.4 bits (105), Expect = 9e-05
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 215 YQSSFFFGCQDTFKLAGQTDKNDN-VVRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVA 273
+ SF C+ ++L + CQ +G WD C C P G
Sbjct: 37 LKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEY 96
Query: 274 TSYEQVRYDDEQGSEVQFGCNKPGYILI-NPRPITC 308
+ V + +Q+ C + Y + N C
Sbjct: 97 ITGPGV---TTYKAVIQYSCEETFYTMKVNDGKYVC 129
Score = 30.5 bits (69), Expect = 1.9
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 28 CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTG 75
C FY G + G +T +G K++ C PVCG + G
Sbjct: 113 CEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVCGLSARTTGG 160
>1gkg_A Complement receptor type 1; module, SCR, structure, sushi; NMR
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1ppq_A
Length = 136
Score = 49.9 bits (119), Expect = 2e-07
Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 32/141 (22%)
Query: 176 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDK 235
E C P PV+G + D + S + C +L G
Sbjct: 2 AEAKSCKTPPDPVNGMVHVIT---------------DIQVGSRITYSCTTGHRLIGH--- 43
Query: 236 NDNVVRCQANG---IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFG 292
+ C +G W C+ C P +G ++T+ E Y GS V +
Sbjct: 44 --SSAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHY----GSVVTYR 97
Query: 293 CN-----KPGYILINPRPITC 308
CN + + L+ I C
Sbjct: 98 CNLGSRGRKVFELVGEPSIYC 118
Score = 36.4 bits (84), Expect = 0.006
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 24/124 (19%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG---IWDFGDLRCEGPVCSDPGRPVD 189
D + S + C +L G + C +G W C+ C P +
Sbjct: 23 DIQVGSRITYSCTTGHRLIGH-----SSAECILSGNTAHWSTKPPICQRIPCGLPPTIAN 77
Query: 190 GYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQAN---- 245
G ++T+ E Y Y+ + + F+L G + + C +N
Sbjct: 78 GDFISTNRENFHYGSV-------VTYRCNLGSRGRKVFELVG-----EPSIYCTSNDDQV 125
Query: 246 GIWD 249
GIW
Sbjct: 126 GIWS 129
Score = 36.0 bits (83), Expect = 0.010
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 19/75 (25%)
Query: 255 CEGPVCSDPGRPVDGY-QVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV---- 309
E C P PV+G V T + GS + + C G+ LI C+
Sbjct: 2 AEAKSCKTPPDPVNGMVHVITDIQV-------GSRITYSCT-TGHRLIGHSSAECILSGN 53
Query: 310 ------REPECKIIK 318
+ P C+ I
Sbjct: 54 TAHWSTKPPICQRIP 68
>1h03_P Complement decay-accelerating factor; immune system protein,
enteroviral receptor, bacterial receptor, ligand for
CD97, complement pathway; 1.7A {Homo sapiens} SCOP:
g.18.1.1 g.18.1.1 PDB: 1h2q_P 1uot_P 1upn_E 1h2p_P
1h04_P 2qzd_A
Length = 125
Score = 48.3 bits (115), Expect = 4e-07
Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 39/148 (26%)
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
C +PG +G + ++ F C +KL G T
Sbjct: 3 CPNPGEIRNGQIDVPG---------------GILFGATISFSCNTGYKLFGST-----SS 42
Query: 241 RCQANG---IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPG 297
C +G W C C P + +G + + Y V + CN G
Sbjct: 43 FCLISGSSVQWSDPLPECREIYCPAPPQIDNGI-IQGERDHYGY----RQSVTYACN-KG 96
Query: 298 YILINPRPITCVR----------EPECK 315
+ +I I C PEC+
Sbjct: 97 FTMIGEHSIYCTVNNDEGEWSGPPPECR 124
Score = 41.4 bits (97), Expect = 1e-04
Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 34/138 (24%)
Query: 122 PTPGA-EYGNFL---DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG---IWDFGDL 174
P PG G + ++ F C +KL G T C +G W
Sbjct: 4 PNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGST-----SSFCLISGSSVQWSDPLP 58
Query: 175 RCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTD 234
C C P + +G ++ + + Y Y+ S + C F + G
Sbjct: 59 ECREIYCPAPPQIDNGI--------IQGERDHY------GYRQSVTYACNKGFTMIG--- 101
Query: 235 KNDNVVRCQAN---GIWD 249
++ + C N G W
Sbjct: 102 --EHSIYCTVNNDEGEWS 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 5e-07
Identities = 73/501 (14%), Positives = 152/501 (30%), Gaps = 121/501 (24%)
Query: 150 LAGQTDKNDNVVRCQANGI-W-DFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQY 207
+A + V I W + + C+ P ++ + Q+ +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKN-------CNSPETVLE--MLQKLLYQIDPNWTSR 216
Query: 208 GNFLDTRYQSSFFFGCQDTFKLAGQTDKN-----DNVVRCQANGIWD-FGDLRCEGPVCS 261
+ + L + +N NV Q W+ F +L C
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAF-NLSC------ 266
Query: 262 DPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVREPECK--IIKP 319
+ + + T ++QV D + +I ++ +T + E K ++K
Sbjct: 267 ---KIL----LTTRFKQV-TDFLSAATTT-------HISLDHHSMT-LTPDEVKSLLLKY 310
Query: 320 LGLASGRIPDSSINATSESPYLVRVNACSVPLIPGP-RVQELLAEKNVRLFNVLR-TLAN 377
L +P + +P + + A S + G +L ++ +L
Sbjct: 311 LDCRPQDLPRE---VLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 378 MEVYVYR-----LAILVKGVVTNDIVGRPTEI--RFFY--KQAESENFVVYFPNFNLTMR 428
+E YR L++ I PT + ++ +++ V ++L +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSA---HI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 429 DPGNYG----ELAMITLPKFVQARFV---ILGIVSYMDNACLKFELMGCEEPKVEPLLGY 481
P + + K + I+ Y N F+ P ++ Y
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVD--HY--NIPKTFDSDDLIPPYLD---QY 472
Query: 482 DY---GY--SPCVDNE-----PPVFQNCP--QQPIIVRKGPNGIEPVNITEPVAVDNSGS 529
Y G+ E VF + +Q I A + SGS
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDST------------AWNASGS 519
Query: 530 IARLEIKPQSFKTPMITFHDMAVKYIAYDFDGNVAICEINITVVDETPPLLSCPQSYIIE 589
I + + +K P I +D + + + E N L+ + ++
Sbjct: 520 ILNTLQQLKFYK-PYICDNDPKYERLVNAILDFLPKIEEN---------LICSKYTDLLR 569
Query: 590 --LVDKQDSYVMNFNETRRRV 608
L+ + ++ F E ++V
Sbjct: 570 IALMAEDEAI---FEEAHKQV 587
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis,
developmen protein, differentiation, glycoprotein,
heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A
3i97_A* 1kex_A
Length = 318
Score = 49.4 bits (117), Expect = 2e-06
Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 35/193 (18%)
Query: 313 ECKIIKPLGLASGRIPDSSINATSE-----SPYLVRVNA-----CSVPLIPGPRVQ-ELL 361
+C + LG+ SG I I A+S+ S R+N +Q +L
Sbjct: 6 KCM--EALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLG 63
Query: 362 AEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRP--TEIRFFYKQAESENFVVY 419
+ V A+ +G ++ + + + E+++
Sbjct: 64 LLRFVT------------------AVGTQGAISKETKKKYYVKTYKIDVSS-NGEDWITI 104
Query: 420 F-PNFNLTMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGCEEPKVEPL 478
N + + N ++ + PK + RFV + ++ ++FE+ GC+
Sbjct: 105 KEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKITDYPCS 164
Query: 479 LGYDYGYSPCVDN 491
D+
Sbjct: 165 GMLGMVSGLISDS 177
Score = 39.4 bits (91), Expect = 0.003
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 386 AILVKGVVTNDIVGRPTEIRFFYKQAESENFVVYFPNFNLTMRDPGNY-GELAMITLPKF 444
I+++G + + + Y S+ ++ + GN + +
Sbjct: 229 GIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTFPA 288
Query: 445 VQARFV-ILGIVSYMDNACLKFELMGCE 471
+ RF+ I + L+ EL+GCE
Sbjct: 289 LSTRFIRIYPERATHGGLGLRMELLGCE 316
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 50.0 bits (119), Expect = 2e-06
Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 42/183 (22%)
Query: 312 PECKIIKPLGLASGRIPDSSINATSE-----SPYLVRVN--------ACSVPLIPGPRVQ 358
+ LG+ SG I DS I+A+S SP R+ +Q
Sbjct: 408 TDAPCSNMLGMLSGLIADSQISASSTQEYLWSPSAARLVSSRSGWFPRIPQAQPGEEWLQ 467
Query: 359 -ELLAEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGRP------TEIRFFYKQA 411
+L K V+ ++++G D + + + Y
Sbjct: 468 VDLGTPKTVK------------------GVIIQGARGGDSITAVEARAFVRKFKVSYSL- 508
Query: 412 ESENFVVY-FPNFNLTMRDPGNY-GELAMITLPKFVQARFV-ILGIVSYMDNACLKFELM 468
+++ P GN + I + A++V + ++ E++
Sbjct: 509 NGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFDPIPAQYVRVYPERWSPAGIGMRLEVL 568
Query: 469 GCE 471
GC+
Sbjct: 569 GCD 571
Score = 35.7 bits (82), Expect = 0.053
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 389 VKGVVTNDIVGRPTEIRFF---YKQAES---ENFVVYF-PNFNLTMRDPGNYGELAMITL 441
+ + T + R T+ ++ YK S E+++VY + + + E+ + L
Sbjct: 317 LTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVVLNKL 376
Query: 442 PKFVQARFVILGIVSYMDNACLKFELMGCE 471
+ RFV + ++ L+ EL GC
Sbjct: 377 HAPLLTRFVRIRPQTWHSGIALRLELFGCR 406
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 47.3 bits (111), Expect = 8e-06
Identities = 26/109 (23%), Positives = 34/109 (31%), Gaps = 12/109 (11%)
Query: 23 KTCTPCPRGFYQNNDR----QGVCLKCPMGTYTREEGSKAVQ-ECVPVCGYGTYS--PTG 75
+ G Y++ DR C KCP GTY E + C C GT++ G
Sbjct: 3 EQKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSS-CPVGTFTRHENG 61
Query: 76 LVPCLEC----PRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCR 120
+ C +C P P CP MF C
Sbjct: 62 IEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNATCAPHTVCP 110
Score = 44.6 bits (104), Expect = 6e-05
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 13/120 (10%)
Query: 9 CLHCPAGTFA-----GINQKTCTPCPRGFYQNN-DRQGVCLKC----PMGTYTREEGSKA 58
C CPAGT+ + + C+ CP G + + + C C P + + A
Sbjct: 26 CDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCA-A 84
Query: 59 VQECVPVCGYGTY-SPTGLVPCLECPRNSYTGEPPVGGHK-DCEACPANMFTYQPAAPAR 116
+ + C G + S P CP + C+ C F+ P++ +
Sbjct: 85 LTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMK 144
Score = 41.5 bits (96), Expect = 5e-04
Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 17/136 (12%)
Query: 4 NQVPRCLHCPAGTFAGINQK--------TCTPCPRGFYQNNDRQGVCLKCPMGTYTREEG 55
N + +C C + +K CP G +Q+N CP+G R++G
Sbjct: 60 NGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKG 119
Query: 56 -SKAVQECVPVCGYGTYSPTGL-----VPCLECPRNSYTGEPPVGGHKD--CEACPANMF 107
C C GT+S +C + P D C P+
Sbjct: 120 TETEDVRCKQ-CARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSS 178
Query: 108 TYQPAAPARNFCRVPT 123
+ P+ F R
Sbjct: 179 STSPSPGTAIFPRPEH 194
Score = 41.1 bits (95), Expect = 7e-04
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 8 RCLHCPAGTF-----AGINQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREEGSKA 58
+ GT+ A TC CP G Y + VC CP+GT+TR E
Sbjct: 4 QKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENG-- 61
Query: 59 VQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEAC 102
+++C + +PC P G + C
Sbjct: 62 IEKCHDCSQPCPWPMIEKLPC--AALTDRECTCPPGMFQSNATC 103
Score = 37.2 bits (85), Expect = 0.011
Identities = 25/144 (17%), Positives = 38/144 (26%), Gaps = 24/144 (16%)
Query: 8 RCLHCPAGTF-AGINQKTCTPCPRGFYQNNDRQG----VCLKCPMGTYTREEGSKAVQEC 62
R CP G F + T CP G+ C +C GT++ S +
Sbjct: 88 RECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKA 147
Query: 63 VPVCGYGTY------SPTGLVPCLECPRNSYTGEPPVGGHKD-------------CEACP 103
C + C P S + P G P
Sbjct: 148 YTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVP 207
Query: 104 ANMFTYQPAAPARNFCRVPTPGAE 127
M + + + A +V + E
Sbjct: 208 KGMNSTESNSSASVRPKVLSSIQE 231
Score = 35.3 bits (80), Expect = 0.051
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 45 CPMGTYTREEGSKAVQECVPVCGYGTY-----SPTGLVPCLECPRNSYTGEPPVGGHKDC 99
+GTY + + C GTY + T L C CP ++T G + C
Sbjct: 8 NLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHE--NGIEKC 65
Query: 100 EAC----PANMFTYQPAAPARNFCRVPTPG 125
C P M P A + PG
Sbjct: 66 HDCSQPCPWPMIEKLPCAALTDRECTCPPG 95
Score = 31.5 bits (70), Expect = 0.82
Identities = 14/90 (15%), Positives = 21/90 (23%), Gaps = 2/90 (2%)
Query: 9 CLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPV--C 66
C P+ + + PR + P G + E S A +
Sbjct: 170 CGTLPSFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKVLSSI 229
Query: 67 GYGTYSPTGLVPCLECPRNSYTGEPPVGGH 96
GT + N V H
Sbjct: 230 QEGTVPDNTSSARGKEDVNKTLPNLQVVNH 259
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member;
immune regulator, cytokine-cytokine receptor compl; HET:
NAG; 3.50A {Homo sapiens}
Length = 177
Score = 45.7 bits (107), Expect = 9e-06
Identities = 16/111 (14%), Positives = 26/111 (23%), Gaps = 9/111 (8%)
Query: 24 TCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPT--GLVPCLE 81
T C Y N + C C G + ++ + CG + T C +
Sbjct: 2 PPTACREKQYLINSQ--CCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQ 59
Query: 82 CP-----RNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAE 127
+ C A + R +PG
Sbjct: 60 HKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFG 110
Score = 39.1 bits (90), Expect = 0.001
Identities = 18/128 (14%), Positives = 25/128 (19%), Gaps = 12/128 (9%)
Query: 9 CLHCPAGTFAGINQKTCTPCPRGFYQ----NNDRQGVCLKCPMGTYTREEGS----KAVQ 60
C + IN + C+ C G + CL C + +
Sbjct: 3 PTACREKQYL-INSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHK 61
Query: 61 ECVPVCGYGTYSP---TGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARN 117
C P G C T E P +
Sbjct: 62 YCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDT 121
Query: 118 FCRVPTPG 125
C G
Sbjct: 122 ICEPCPVG 129
Score = 37.2 bits (85), Expect = 0.007
Identities = 19/136 (13%), Positives = 33/136 (24%), Gaps = 17/136 (12%)
Query: 9 CLHCPAGTFA-----GINQKTCTPCPRGFYQNND-RQGVCLKCPMGTYTREEGSK----A 58
C C G + C PC + + R+ C + + +
Sbjct: 18 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 77
Query: 59 VQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHK-----DCEACPANMFTYQPAA 113
+ + C G + + R+ G CE CP + +
Sbjct: 78 ETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVG--FFSNVS 135
Query: 114 PARNFCRVPTPGAEYG 129
A C T
Sbjct: 136 SAFEKCHPWTSCETKD 151
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental
protein, differentiation, glycoprotein, membrane,
neurogenesis, transmembrane; 1.95A {Homo sapiens}
Length = 325
Score = 46.7 bits (110), Expect = 1e-05
Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 36/216 (16%)
Query: 313 ECKIIKPLGLASGRIPDSSINATSE------SPYLVRVNA-----CSVPLIPGPRVQ-EL 360
+C PLG+ SGRI + I+A+S +P R++ +Q +L
Sbjct: 6 QCN--VPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDNGWTPNLDSNKEYLQVDL 63
Query: 361 LAEKNVRLFNVLRTLANMEVYVYRLAILVKGVVTNDIVGR--PTEIRFFYKQAESENFVV 418
+ AI +G ++ + + + V
Sbjct: 64 RFLTMLT------------------AIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVY 105
Query: 419 YFPNFNLTMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGCEEPKVEPL 478
+ + + E+ + L + RFV + ++ L+ EL GC
Sbjct: 106 RHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLELFGCRVTDAPCS 165
Query: 479 --LGYDYGYSPCVDNEPPVFQNCPQQPIIVRKGPNG 512
LG G Q P R +
Sbjct: 166 NMLGMLSGLIADSQISASSTQEYLWSPSAARLVSSR 201
Score = 28.6 bits (63), Expect = 6.1
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 445 VQARFVILGIVSYMDNA-CLKFELMGCE 471
+ A++V + + ++ E++GC+
Sbjct: 296 IPAQYVRVYPERWSPAGIGMRLEVLGCD 323
>2ehf_A CUB and sushi domain-containing protein 1; CUB and sushi multiple
domains protein 1, CSMD1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 73
Score = 42.5 bits (100), Expect = 1e-05
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 248 WDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPIT 307
E C DPG P G + +S+ G + F C + L+ R IT
Sbjct: 2 SSGSSGEIEKGGCGDPGIPAYGKRTGSSF-------LHGDTLTFECP-AAFELVGERVIT 53
Query: 308 CV-------REPECKIIK 318
C +P C
Sbjct: 54 CQQNNQWSGNKPSCSGPS 71
Score = 42.1 bits (99), Expect = 2e-05
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 21/92 (22%)
Query: 169 WDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFK 228
E C DPG P G + +S+ + + F C F+
Sbjct: 2 SSGSSGEIEKGGCGDPGIPAYGKRTGSSF----------------LHGDTLTFECPAAFE 45
Query: 229 LAGQTDKNDNVVRCQANGIWDFGDLRCEGPVC 260
L G + V+ CQ N W C GP
Sbjct: 46 LVG-----ERVITCQQNNQWSGNKPSCSGPSS 72
Score = 32.1 bits (73), Expect = 0.065
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 122 PTPGA-EYGNFLDTRY--QSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEG 178
PG YG + + + F C F+L G + V+ CQ N W C G
Sbjct: 15 GDPGIPAYGKRTGSSFLHGDTLTFECPAAFELVG-----ERVITCQQNNQWSGNKPSCSG 69
Query: 179 PVC 181
P
Sbjct: 70 PSS 72
>2yby_A Complement factor H; immune system, complement regulation, innate
immunity, infec; 1.58A {Mus musculus}
Length = 124
Score = 44.1 bits (104), Expect = 1e-05
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 18/119 (15%)
Query: 202 YDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCS 261
Y +E + + + C + F + + +RC A G W+ ++ C C
Sbjct: 16 YYEESLRPNFPVSIGNKYSYKCDNGFSPPSGY--SWDYLRCTAQG-WE-PEVPCV-RKCV 70
Query: 262 DPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILIN-PRPITCVR-----EPEC 314
+G ++Y + Y QG ++ C GY L N +TC P+C
Sbjct: 71 FHY-VENGD---SAYWEKVY--VQGQSLKVQCY-NGYSLQNGQDTMTCTENGWSPPPKC 122
Score = 27.5 bits (61), Expect = 7.1
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 10/64 (15%)
Query: 260 CSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPR---PITCVR-----E 311
C P G + + G++ + C+ G+ + + C E
Sbjct: 5 CEFPQFK-YGRLYYEESLRPNFPVSIGNKYSYKCD-NGFSPPSGYSWDYLRCTAQGWEPE 62
Query: 312 PECK 315
C
Sbjct: 63 VPCV 66
>1ly2_A CD21, complement receptor type 2; epstein BARR virus, regulator of
comple activation, short consensus repeat, viral
receptor; HET: NAG; 1.80A {Homo sapiens} SCOP: g.18.1.1
g.18.1.1 PDB: 1w2r_A 1w2s_B 1ghq_B* 3oed_C
Length = 130
Score = 43.7 bits (103), Expect = 2e-05
Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 42/153 (27%)
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
C P ++G ++ Y + + C TF+L G+ +
Sbjct: 4 CGSPPPILNG--------RISYYSTPI------AVGTVIRYSCSGTFRLIGE-----KSL 44
Query: 241 RC----QANGIWDFGDLRCEG----PVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFG 292
C + +G WD +CE C +P P R+ G V F
Sbjct: 45 LCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKI--RGSTPYRH----GDSVTFA 98
Query: 293 CNKPGYILINPRPITC--------VREPECKII 317
C + + + + C R P C I
Sbjct: 99 CK-TNFSMNGNKSVWCQANNMWGPTRLPTCVSI 130
Score = 41.8 bits (98), Expect = 8e-05
Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 37/136 (27%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRC----QANGIWDFGDLRCEG----PVCSDP 184
+ + C TF+L G+ + C + +G WD +CE C +P
Sbjct: 21 PIAVGTVIRYSCSGTFRLIGE-----KSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEP 75
Query: 185 GRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQA 244
P ++ R+ S F C+ F + G + V CQA
Sbjct: 76 IVPGGYKIRGST---------------PYRHGDSVTFACKTNFSMNG-----NKSVWCQA 115
Query: 245 NGIWDFGDLRCEGPVC 260
N +W L P C
Sbjct: 116 NNMWGPTRL----PTC 127
Score = 32.2 bits (73), Expect = 0.21
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 122 PTPGAEYGNFLDT----RYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCE 177
P P G + R+ S F C+ F + G + V CQAN +W L
Sbjct: 73 PEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNG-----NKSVWCQANNMWGPTRL--- 124
Query: 178 GPVC 181
P C
Sbjct: 125 -PTC 127
Score = 31.4 bits (71), Expect = 0.30
Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Query: 260 CSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVRE-------- 311
C P ++G +++ + G+ +++ C+ + LI + + C+ +
Sbjct: 4 CGSPPPILNG-RISYYSTPIAV----GTVIRYSCS-GTFRLIGEKSLLCITKDKVDGTWD 57
Query: 312 ---PECKIIKPLG 321
P+C+
Sbjct: 58 KPAPKCEYFNKYS 70
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 44.1 bits (103), Expect = 3e-05
Identities = 16/106 (15%), Positives = 25/106 (23%), Gaps = 6/106 (5%)
Query: 25 CTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTY--SPTGLVPCLEC 82
+ C Y + Q C KC G + + +K C TY + CL C
Sbjct: 5 GSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSC 64
Query: 83 PRNSYTGEPPVG----GHKDCEACPANMFTYQPAAPARNFCRVPTP 124
+ + C + C
Sbjct: 65 GSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRK 110
Score = 38.3 bits (88), Expect = 0.003
Identities = 23/146 (15%), Positives = 33/146 (22%), Gaps = 36/146 (24%)
Query: 9 CLHCPAGTFAG-INQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREEGSK------ 57
C + Q C+ C G + VC C TYT+
Sbjct: 5 GSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSC 64
Query: 58 ---------------AVQECVPVCGYGTYSPTGL-------VPCLECPRNSYTGEPPVGG 95
Q + C G Y P +C P
Sbjct: 65 GSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTET 124
Query: 96 H-KDCEACPANMFTYQPAAPARNFCR 120
C+ C T+ + + CR
Sbjct: 125 SDVVCKPCAPG--TFSNTTSSTDICR 148
Score = 29.4 bits (65), Expect = 2.6
Identities = 9/56 (16%), Positives = 13/56 (23%), Gaps = 6/56 (10%)
Query: 8 RCLHCPAGTFAGINQK-----TCTPCPRGFYQN-NDRQGVCLKCPMGTYTREEGSK 57
C G C PC G + N +C + G+
Sbjct: 107 PLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGNA 162
Score = 28.3 bits (62), Expect = 5.1
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 8 RCLHCPAGTFAGINQKT-------CTPCPRGFYQNNDRQG----VCLKCPMGTYTREEGS 56
R C G + ++++ C GF VC C GT++ S
Sbjct: 84 RICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSS 143
Query: 57 KAVQECVPVCGYGTYSPT 74
+ +C
Sbjct: 144 TDICRPHQICNVVAIPGN 161
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 46.0 bits (109), Expect = 3e-05
Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 31/172 (18%)
Query: 102 CPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLA-GQTDKNDNV 160
CP QP +Y +++ F C+ ++L G +
Sbjct: 3 CP------QPKTLDEFTIIQN-LQPQY------QFRDYFIATCKQGYQLIEGNQVLHSFT 49
Query: 161 VRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFF 220
CQ +G W RC+ C P +G T+ V Y++
Sbjct: 50 AVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGV------------NTYKARIQ 97
Query: 221 FGCQDTFK----LAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDP-GRPV 267
+ C + + AG + V C A GIW + P C G+PV
Sbjct: 98 YYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPVCGKPV 149
Score = 42.1 bits (99), Expect = 4e-04
Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 17/132 (12%)
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLA-GQTDKNDNV 239
C P + Q +Y +++ F C+ ++L G +
Sbjct: 3 CPQPKTLDEFT--IIQNLQPQY-----------QFRDYFIATCKQGYQLIEGNQVLHSFT 49
Query: 240 VRCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYI 299
CQ +G W RC+ C P +G T+ V + + +Q+ C++P Y
Sbjct: 50 AVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGV---NTYKARIQYYCHEPYYK 106
Query: 300 LINPRPITCVRE 311
+ +
Sbjct: 107 MQTRAGSRESEQ 118
>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 86
Score = 41.9 bits (98), Expect = 3e-05
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 19/93 (20%)
Query: 181 CSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 240
C P G + V T Y++ + C++TF ND
Sbjct: 8 CGPPDDLPSGRVEYITGPGV------------TTYKAVIQYSCEETFY---TMKVNDGKY 52
Query: 241 RCQANGIWDFGDLRCEGP----VCSDPGRPVDG 269
C A+G W P VC R G
Sbjct: 53 VCDADGFWTSSKGEKSLPVCEPVCGLSARTTGG 85
Score = 40.8 bits (95), Expect = 8e-05
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 133 DTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGP----VCSDPGRPV 188
T Y++ + C++TF ND C A+G W P VC R
Sbjct: 27 VTTYKAVIQYSCEETFY---TMKVNDGKYVCDADGFWTSSKGEKSLPVCEPVCGLSARTT 83
Query: 189 DG 190
G
Sbjct: 84 GG 85
Score = 28.4 bits (63), Expect = 1.9
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 28 CPRGFYQNNDRQGVCLKCPM-GTYTREEGSKAVQECVPVCG 67
C FY G C G +T +G K++ C PVCG
Sbjct: 38 CEETFYTMKVNDGK-YVCDADGFWTSSKGEKSLPVCEPVCG 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 4e-05
Identities = 65/449 (14%), Positives = 130/449 (28%), Gaps = 170/449 (37%)
Query: 251 GDLRCEGPVCSDPGRPVDGYQVAT------------SYEQVRYDDEQGSEV----QFGCN 294
G L V P + +A+ E DDE + +F
Sbjct: 14 GSLEHVLLV------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--- 64
Query: 295 KPGYI--LINPRPI--------TCVREPECKIIKPLG-----LASGRIPDSSINATSESP 339
GY+ L+ P + C+ E E ++ G LA+ ++ + ++
Sbjct: 65 -LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GNDIHALAA-KLLQENDTTLVKTK 120
Query: 340 YLVR--VNACSVPLIPGPRVQE--LL---AEKNVRLFNV-------------LRTLANME 379
L++ + A + P + L E N +L + LR L +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY--Q 178
Query: 380 VYVYRLAILVK--GVVTNDIVGRPTEIRFFYKQAESENFVVYFPNFNLT--MRDPG---- 431
Y + L+K ++++ + + Q N+ + +P
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-----------LNILEWLENPSNTPD 227
Query: 432 -NYGELAMITLPKFVQARFVILGIVS---YMDNACLKFELMGCEEPKVEPLLGYDYGYSP 487
+Y I+ P ++G++ Y+ +L+G ++ L G +
Sbjct: 228 KDYLLSIPISCP--------LIGVIQLAHYV-VTA---KLLGFTPGELRSYLK---GATG 272
Query: 488 CVDNEPPVFQNCPQQPIIVRKGPNGIEPVNITEPVAVDNSGSIARLEIKPQSFKTPMITF 547
Q ++ VA+ + S +F
Sbjct: 273 HS------------QGLVT--------------AVAIAETDSWE--------------SF 292
Query: 548 HDMAVKYIAYDF-------------DGNVAICEINITVVDETP-PLLSC---PQSYIIEL 590
K I F +I E ++ + P P+LS Q + +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 591 VDK--------QDSYVMNFNETRRRVNVS 611
V+K + + N + + VS
Sbjct: 353 VNKTNSHLPAGKQVEISLVN-GAKNLVVS 380
Score = 42.7 bits (100), Expect = 4e-04
Identities = 70/430 (16%), Positives = 120/430 (27%), Gaps = 126/430 (29%)
Query: 10 LHCPAGTFAGINQKTCTPCP---RGFYQNNDRQGVCLKCPMGTYTREEGS---KAVQE-- 61
+H A N T + + + K P + ++ S +AV E
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITAR----IMAKRP---FDKKSNSALFRAVGEGN 153
Query: 62 --CVPVCG---------------YGTYSPTGLV-PCLECPRNSYTGEPPVGGHKDCEACP 103
V + G Y TY LV ++ ++ T + D E
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHV--LVGDLIK--FSAETLSELIRTTLDAE--- 206
Query: 104 ANMFTYQPAAPARNFCRVP--TPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVV 161
+ + P TP +Y L + + L G VV
Sbjct: 207 ---KVFTQGLNILEWLENPSNTPDKDY---LLS---------IPISCPLIGVIQLAHYVV 251
Query: 162 RCQANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFF 221
+ G + G+LR + G G A + + + + + FF
Sbjct: 252 TAKLLG-FTPGELR--SYLKGATGH-SQGLVTAVAIAETDSWESFFVSVRKA-ITVLFFI 306
Query: 222 G--CQDTFKLAGQTDKNDNVVR-CQANGIWDFGDLRCEGPVCSDPGRP---VDGYQVATS 275
G C + + T +++ N EG P P +
Sbjct: 307 GVRCYEAY---PNTSLPPSILEDSLENN---------EGV----PS-PMLSISNLTQEQV 349
Query: 276 YEQVRYDDEQGSEVQFGCNKPGYI-LIN-PRPITCVREPE---------CKIIKPLGLAS 324
+ V + K I L+N + + P+ K P GL
Sbjct: 350 QDYVNKTNSHLPA-----GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 325 GRIPDSS-----------INATSESPYLVRVNACSVPLIPGPRVQELLAEKNVRLFNVLR 373
RIP S + + S LV + + + L + NV FN
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPAS---------DLINKDLVKNNV-SFNA-- 452
Query: 374 TLANMEVYVY 383
++++ VY
Sbjct: 453 --KDIQIPVY 460
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth
factor, NGF, neurotrophin, common neurotrophin receptor;
2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1
g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Length = 161
Score = 43.2 bits (101), Expect = 5e-05
Identities = 27/125 (21%), Positives = 32/125 (25%), Gaps = 16/125 (12%)
Query: 9 CLHCPAGTFA----GINQKTCTPCPRGFYQNNDRQG-----VCLKCPMGTYTREEGSKAV 59
C C G G NQ C PC ++ C +C
Sbjct: 16 CKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSATEPCKPCTECLGLQSMSAPCV-EA 74
Query: 60 QECVPVCGYGTYSPTG---LVPCLECPRNSYTGEPPVGGHK-DCEACPANMFTYQPAAPA 115
+ V C YG Y C C S CE CP TY A
Sbjct: 75 DDAVCRCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQNTVCEECPEG--TYSDEANH 132
Query: 116 RNFCR 120
+ C
Sbjct: 133 VDPCL 137
Score = 41.7 bits (97), Expect = 2e-04
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 28 CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGL-----VPCLEC 82
C G Y ++ C C +G + C P T+S PC EC
Sbjct: 4 CSTGLYTHSGE--CCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSATEPCKPCTEC 61
Query: 83 PRNSYTGEPPVGGHKDCEACPANMF 107
P V C +
Sbjct: 62 LGLQSMSAPCVEADDAVCRCAYGYY 86
Score = 33.2 bits (75), Expect = 0.13
Identities = 20/104 (19%), Positives = 26/104 (25%), Gaps = 16/104 (15%)
Query: 4 NQVPRCLHCPAGTFAGINQKTCTP-------CPRGFYQN--NDRQGVCLKCPMGTYTREE 54
+ C C C C G+YQ+ C C +G+
Sbjct: 50 SATEPCKPCTECLGLQSMSAPCVEADDAVCRCAYGYYQDEETGHCEACSVCEVGSGLVFS 109
Query: 55 G-SKAVQECVPVCGYGTYSPTGL-----VPCLECPRNSYTGEPP 92
K C C GTYS +PC C
Sbjct: 110 CQDKQNTVCEE-CPEGTYSDEANHVDPCLPCTVCEDTERQLREC 152
Score = 27.8 bits (61), Expect = 6.9
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 9/54 (16%)
Query: 12 CPAGTFAGIN-----QKTCTPCPRGFYQNNDRQGV----CLKCPMGTYTREEGS 56
C G+ + C CP G Y + C C E +
Sbjct: 100 CEVGSGLVFSCQDKQNTVCEECPEGTYSDEANHVDPCLPCTVCEDTERQLRECT 153
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor
immunomodulator, TNF alpha receptor; 2.0A {Vaccinia
virus}
Length = 142
Score = 42.0 bits (98), Expect = 1e-04
Identities = 24/103 (23%), Positives = 30/103 (29%), Gaps = 15/103 (14%)
Query: 12 CPAGTF--AGINQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREEGSK-AVQECVP 64
C G K C C G Y ++ +C CP T+T C
Sbjct: 2 CEQGVSYYNSQELKCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNRSPWCHSCRG 61
Query: 65 VCGYGTY-----SPTGLVPCLECPRNSYTGEPPVGGHKDCEAC 102
CG +PT C C NSY +C C
Sbjct: 62 PCGTNRVEVTPCTPTTNRIC-HCDSNSY--CLLKASDGNCVTC 101
Score = 42.0 bits (98), Expect = 1e-04
Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 19/117 (16%)
Query: 9 CLHCPAGTFA-----GINQKTCTPCPRGFYQNN-DRQGVCL----KCPMGTYTREEGSKA 58
C C GT++ + C CP + + +R C C +
Sbjct: 17 CKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNRSPWCHSCRGPCGTNRVEVTPCT-P 75
Query: 59 VQECVPVCGYGTYSPTGL--------VPCLECPRNSYTGEPPVGGHKDCEACPANMF 107
+ C +Y P +C R G+ C+ C +
Sbjct: 76 TTNRICHCDSNSYCLLKASDGNCVTCAPKTKCGRGYGKKGEDEMGNTICKKCRKGTY 132
Score = 37.8 bits (87), Expect = 0.002
Identities = 22/89 (24%), Positives = 25/89 (28%), Gaps = 16/89 (17%)
Query: 2 DMNQVPRCLHCPAGTFAGINQKT-CTP-------CPRGFYQNNDRQGV-------CLKCP 46
N+ P C C + T CTP C Y KC
Sbjct: 49 IYNRSPWCHSCRGPCGTNRVEVTPCTPTTNRICHCDSNSYCLLKASDGNCVTCAPKTKCG 108
Query: 47 MGTYTREEGSKAVQECVPVCGYGTYSPTG 75
G + E C C GTYS TG
Sbjct: 109 RGYGKKGEDEMGNTICKK-CRKGTYSKTG 136
Score = 35.9 bits (82), Expect = 0.013
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 28 CPRG-FYQNNDRQGVCLKCPMGTYTREEGSKAVQ-ECVPVCGYGTYSPT--GLVPCL--- 80
C +G Y N+ C C GTY+ K C C T++ C
Sbjct: 2 CEQGVSYYNSQELKCCKLCKPGTYSDHRCDKYSDTICGH-CPSDTFTSIYNRSPWCHSCR 60
Query: 81 -ECPRNSYTGEPPVGGHKDCEACPANMF 107
C N P C +N +
Sbjct: 61 GPCGTNRVEVTPCTPTTNRICHCDSNSY 88
Score = 28.1 bits (62), Expect = 5.6
Identities = 6/36 (16%), Positives = 8/36 (22%), Gaps = 4/36 (11%)
Query: 8 RCLHCPAGTFAGINQKT----CTPCPRGFYQNNDRQ 39
C G + C C +G Y
Sbjct: 103 PKTKCGRGYGKKGEDEMGNTICKKCRKGTYSKTGHH 138
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
3qbq_B 3nzy_B
Length = 216
Score = 42.2 bits (98), Expect = 2e-04
Identities = 19/146 (13%), Positives = 34/146 (23%), Gaps = 10/146 (6%)
Query: 7 PRCLHCPAGTFAGINQKT--CTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQ-ECV 63
P G+ + PC + + + + C +C G Y + + C+
Sbjct: 10 HSSGLVPRGSHMHMQVTLQVTPPCTQERHYEHLGR-CCSRCEPGKYLSSKCTPTSDSVCL 68
Query: 64 PVCGYGTYSPTGL-----VPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNF 118
P CG Y T + C G H C + +
Sbjct: 69 P-CGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRCACTAGYHWNSDCECCR 127
Query: 119 CRVPTPGAEYGNFLDTRYQSSFFFGC 144
+ + C
Sbjct: 128 RNTECAPGFGAQHPLQLNKDTVCTPC 153
Score = 31.4 bits (70), Expect = 0.73
Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 4/77 (5%)
Query: 33 YQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPCLECPRNSY-TGEP 91
++ P G++ + + P C + C C Y + +
Sbjct: 3 SSHHHHHHSSGLVPRGSHM---HMQVTLQVTPPCTQERHYEHLGRCCSRCEPGKYLSSKC 59
Query: 92 PVGGHKDCEACPANMFT 108
C C + +
Sbjct: 60 TPTSDSVCLPCGPDEYL 76
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 40.9 bits (95), Expect = 3e-04
Identities = 26/114 (22%), Positives = 34/114 (29%), Gaps = 19/114 (16%)
Query: 8 RCLHCPAGTFAGINQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREEGSKAVQECV 63
LHC T+ N + C C G + + VC C G Y SK + C
Sbjct: 3 HMLHCVGDTYP-SNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPC- 60
Query: 64 PVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHK---------DCEACPANMFT 108
C +G C T G + DC CP F+
Sbjct: 61 TWCNLR----SGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFS 110
Score = 36.2 bits (83), Expect = 0.009
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 4 NQVPRCLHCPAGTF-AGINQKTCTPCPRGFYQNNDRQGVC--------LKCPMGTYTREE 54
+Q C C G + ++ K C PC ++ + +C GT +
Sbjct: 35 SQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDS 94
Query: 55 GSKAVQECVPVCGYGTYSPTGLVPCLECPRNSYTGE 90
V +C P C G +SP C + G+
Sbjct: 95 YKPGV-DCAP-CPPGHFSPGDNQACKPWTNCTLAGK 128
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR
superfamily, viral protein; HET: NAG; 2.65A {Human
herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 40.9 bits (95), Expect = 3e-04
Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 15/128 (11%)
Query: 12 CPAGTFAGINQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREEGS----KAVQECV 63
C + + + C C G+ VC CP GTY Q C
Sbjct: 4 CKEDEY-PVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCD 62
Query: 64 PVCGYGTYSP--TGLVPCLECPRNSYTGEPPVGGHKDCEA---CPANMFTYQPAAPARNF 118
P G C + C A + +++
Sbjct: 63 PAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDT 122
Query: 119 -CRVPTPG 125
C+ PG
Sbjct: 123 LCQNCPPG 130
Score = 39.0 bits (90), Expect = 0.002
Identities = 22/118 (18%), Positives = 30/118 (25%), Gaps = 20/118 (16%)
Query: 9 CLHCPAGTFA-----GINQKTCTPCPRGFYQNN-DRQGVCLKCP-----MGTYTREEGSK 57
C C G + C PCP G Y + + CL+C MG S
Sbjct: 16 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCS- 74
Query: 58 AVQECVPVCGYGTYSPTGL-------VPCLECPRNSYTGEPPVGGH-KDCEACPANMF 107
+ V C G + + C+ CP F
Sbjct: 75 RTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTF 132
Score = 34.4 bits (78), Expect = 0.052
Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 21/111 (18%)
Query: 2 DMNQVPRCLHCPAGTFAG---------INQKTCTPCPRGFYQNNDRQGVCL------KCP 46
+N + +CL C A + C G + C
Sbjct: 48 HLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSS 107
Query: 47 MGTYTREEG-SKAVQECVPVCGYGTYSPTGLV----PCLECPRNSYTGEPP 92
G ++ G C C GT+SP G + +C
Sbjct: 108 PGQRVQKGGTESQDTLCQN-CPPGTFSPNGTLEECQHQTKCSWLVTKAGAG 157
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 42.9 bits (100), Expect = 3e-04
Identities = 43/315 (13%), Positives = 64/315 (20%), Gaps = 48/315 (15%)
Query: 9 CLHCPAGTFAGINQKTCTPCPR-GFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCG 67
C G G + C + TRE + A Q C
Sbjct: 522 CQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCE 581
Query: 68 YGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAE 127
N K+ + + P +
Sbjct: 582 GEKRQEEDCTFS-IMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQL 640
Query: 128 YGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRP 187
Y C F+ G RC +G W GD+ C+ C P
Sbjct: 641 YL------VGEDVEISCLTGFETVG-----YQYFRCLPDGTWRQGDVECQRTECIKPVVQ 689
Query: 188 VDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANG- 246
+ Y R S C F +AG + CQ N
Sbjct: 690 EVL--------TITPFQRLY------RIGESIELTCPKGFVVAG-----PSRYTCQGNSW 730
Query: 247 -IWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRP 305
L CE + ++ + + C + +
Sbjct: 731 TPPISNSLTCEKDTLTKLKGHCQL------GQKQSGSECICMSPEEDC---SHHSEDLCV 781
Query: 306 ITC-----VREPECK 315
P CK
Sbjct: 782 FDTDSNDYFTSPACK 796
>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain,
SCR, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 38.2 bits (89), Expect = 5e-04
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 255 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCV----- 309
CSD +G+ TS+ ++ G+ + + C+ PGY ++ +TC
Sbjct: 3 SGSSGCSDLPEIQNGW-KTTSHTELVR----GARITYQCD-PGYDIVGSDTLTCQWDLSW 56
Query: 310 --REPECKIIK 318
P C+ +
Sbjct: 57 SSDPPFCEKTE 67
Score = 36.6 bits (85), Expect = 0.002
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 19/88 (21%)
Query: 176 CEGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDK 235
CSD +G++ + + + + C + + G
Sbjct: 3 SGSSGCSDLPEIQNGWKTTSHT--------------ELVRGARITYQCDPGYDIVG---- 44
Query: 236 NDNVVRCQANGIWDFGDLRCEGPVCSDP 263
+ + CQ + W CE S P
Sbjct: 45 -SDTLTCQWDLSWSSDPPFCEKTEESGP 71
Score = 32.8 bits (75), Expect = 0.043
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 119 CRVPTP---GAEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLR 175
C G + + + + + C + + G + + CQ + W
Sbjct: 8 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVG-----SDTLTCQWDLSWSSDPPF 62
Query: 176 CEGPVCSDP 184
CE S P
Sbjct: 63 CEKTEESGP 71
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 40.0 bits (93), Expect = 6e-04
Identities = 25/133 (18%), Positives = 35/133 (26%), Gaps = 34/133 (25%)
Query: 12 CPAGTF--AGINQKTCTPCPRGFYQNND-----RQGVCLKCPMGTYT------------- 51
CP G + N CT C +G Y ND + C +C G++T
Sbjct: 5 CPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCS 64
Query: 52 ---REEGSKAVQECVP------VCGYGTYSPTGLVPCLECPRNS-----YTGEPPVGGHK 97
+E G + C C Y +C S
Sbjct: 65 KCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQN 124
Query: 98 DCEACPANMFTYQ 110
C A F +
Sbjct: 125 TVCTCHAGFFLRE 137
Score = 36.6 bits (84), Expect = 0.010
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 26 TPCPRGFYQNNDRQGV-CLKCPMGTYTREE--GSKAVQECVPVCGYGTYS--PTGLVPCL 80
+ CP+G Y + + C KC GTY + G +C C G+++ L CL
Sbjct: 3 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRE-CESGSFTASENHLRHCL 61
Query: 81 ECPR 84
C +
Sbjct: 62 SCSK 65
Score = 35.4 bits (81), Expect = 0.024
Identities = 11/46 (23%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 8 RCLHCPAGTFA---GINQKTCTPCPRGFYQNNDRQGVCLKCPMGTY 50
C C GT Q T C GF+ + C C
Sbjct: 106 NCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLE 151
Score = 31.6 bits (71), Expect = 0.48
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 12 CPAGTFAGINQKT------CTPCPRGFYQN--NDRQGVCLKCPMGTYTREEGSKAVQECV 63
C + + C+ C G ++Q C G + RE + C
Sbjct: 88 CRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCK 147
Query: 64 P 64
Sbjct: 148 K 148
Score = 31.2 bits (70), Expect = 0.60
Identities = 28/128 (21%), Positives = 41/128 (32%), Gaps = 23/128 (17%)
Query: 4 NQVPRCLHCPAGTF-AGINQ----KTCTPCPRGFYQ------NNDRQGVCLKCPMGTYTR 52
Q C C +G+F A N +C+ C + Q DR VC C Y R
Sbjct: 37 GQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVC-GCRKNQY-R 94
Query: 53 EEGSKAVQECVP--VCGYGTY----SPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANM 106
S+ + +C +C GT C C + E C C ++
Sbjct: 95 HYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVC-TCHAGFFLRE---NECVSCSNCKKSL 150
Query: 107 FTYQPAAP 114
+ P
Sbjct: 151 ECTKLCLP 158
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D
bond, glycoprotein, membrane, secreted, signal-anchor,
transmembrane, apoptosis; 2.45A {Homo sapiens} PDB:
3mi8_D 3mhd_D
Length = 176
Score = 39.4 bits (91), Expect = 0.001
Identities = 19/117 (16%), Positives = 29/117 (24%), Gaps = 10/117 (8%)
Query: 23 KTCTPCP--RGFYQNNDRQGVCLKCPMGTYTREEGSK-AVQECVPVCGYGTYS--PTGLV 77
++ P + VC +CP GT+ + + + C P C Y+ L
Sbjct: 1 RSVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGP-CPPRHYTQFWNYLE 59
Query: 78 PCLEC----PRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGN 130
C C H C F + C G
Sbjct: 60 RCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGT 116
Score = 37.5 bits (86), Expect = 0.006
Identities = 24/128 (18%), Positives = 36/128 (28%), Gaps = 15/128 (11%)
Query: 8 RCLHCPAGTFA----GINQKT-CTPCPRGFYQNN-DRQGVCLKC----PMGTYTREEGSK 57
C CP GTF + T C PCP Y + C C
Sbjct: 21 VCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACH- 79
Query: 58 AVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKD--CEACPANMFTYQPAAPA 115
A C G ++ G P ++ C+ CP T+ ++ +
Sbjct: 80 ATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPG--TFSASSSS 137
Query: 116 RNFCRVPT 123
C+
Sbjct: 138 SEQCQPHR 145
Score = 35.5 bits (81), Expect = 0.021
Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 10/94 (10%)
Query: 21 NQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREEGSKAV-QECVPVCGYGTYSPTG 75
+ C CP G + C CP YT+ + C +CG
Sbjct: 18 ERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEAR- 76
Query: 76 LVPCLECPRNSYTGEPPVGGHKDCEACPANMFTY 109
C + G C +
Sbjct: 77 --ACHATHNRACR--CRTGFFAHAGFCLEHASCP 106
Score = 32.8 bits (74), Expect = 0.20
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 12/98 (12%)
Query: 4 NQVPRCLHCPAGTFAG--------INQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEG 55
N + RC +C C GF+ + CP G G
Sbjct: 56 NYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPG 115
Query: 56 S-KAVQECVPVCGYGTYSPT--GLVPCLECPRNSYTGE 90
+ +C P C GT+S + C + G
Sbjct: 116 TPSQNTQCQP-CPPGTFSASSSSSEQCQPHRNCTALGL 152
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP:
g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R
1d4v_A
Length = 130
Score = 38.5 bits (89), Expect = 0.001
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 7 PRCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGV-----CLKCPMGTYTREEGSKAVQE 61
P CP G + + C C G + + C +C G + +
Sbjct: 23 PSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCT-TTRN 81
Query: 62 CVPVCGYGTY-SPTGLVPCLEC 82
V C GT+ C +C
Sbjct: 82 TVCQCEEGTFREEDSPEMCRKC 103
Score = 29.7 bits (66), Expect = 1.3
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 13/119 (10%)
Query: 8 RCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMG-TYTREEGSKAVQECVP-- 64
A + + CP G + + D C+ C G Y+ + C+
Sbjct: 8 LAPQQRAAPQQKRSSPSEGLCPPGHHISED-GRDCISCKYGQDYSTHWND--LLFCLRCT 64
Query: 65 VCGYGTY-----SPTGLVPCLECPRNSYTGEPPVGGHKDCE-ACPANMFTYQPAAPARN 117
C G + T C +C ++ E + C CP M P +
Sbjct: 65 RCDSGEVELSPCTTTRNTVC-QCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSD 122
Score = 28.1 bits (62), Expect = 4.7
Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 11/96 (11%)
Query: 18 AGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTY---SPT 74
A I Q+ P R Q CP G + E+G +C+ C YG
Sbjct: 1 ALITQQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGR----DCIS-CKYGQDYSTHWN 55
Query: 75 GL---VPCLECPRNSYTGEPPVGGHKDCEACPANMF 107
L + C C P C F
Sbjct: 56 DLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTF 91
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic
antibody, FAB fragment, antibody-receptor complex,
cysteine-rich domain, FAS, immune; HET: EDO; 1.93A
{Homo sapiens} PDB: 3thm_F*
Length = 156
Score = 37.4 bits (86), Expect = 0.004
Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 8/79 (10%)
Query: 10 LHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQ--ECVPVCG 67
++ T G + + CP G + + +CVP C
Sbjct: 14 INSKGLELRKTVTTVETQNLEGLHHDGQF--CHKPCPPGERKARDCTVNGDEPDCVP-CQ 70
Query: 68 YGTY---SPTGLVPCLECP 83
G C C
Sbjct: 71 EGKEYTDKAHFSSKCRRCR 89
Score = 35.9 bits (82), Expect = 0.013
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 25/117 (21%)
Query: 9 CLHCPAGTF------AGINQKTCTPCPRG--FYQNNDRQGVCLKCPMGTYTREEGSKAVQ 60
CP G ++ C PC G + C +C G +
Sbjct: 44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCR--LCDEGHGLEVEI 101
Query: 61 ECVP------VCGYGTYSPTGL----VPCLECPRNSYTGEPPVGGHKD--CEACPAN 105
C C + + + PC +C + C+ +
Sbjct: 102 NCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIK---ECTLTSNTKCKEEGSR 155
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 39.1 bits (90), Expect = 0.004
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 11 HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGT 70
CP P G Y KCP + GS CV CG +
Sbjct: 239 TCPPLMLYNPTTYQMDVNPEGKYSFGATC--VKKCPRNYVVTDHGS-----CVRACGADS 291
Query: 71 Y--SPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFC 119
Y G+ C +C +G + ++ N + +
Sbjct: 292 YEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 29.1 bits (64), Expect = 4.7
Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 10/92 (10%)
Query: 21 NQKTCTP-CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPC 79
++ TC CP N P G Y+ CV C
Sbjct: 232 DEATCKDTCPPLMLYNPTTY-QMDVNPEGKYSFG------ATCVKKCPRNYVVTDHGSCV 284
Query: 80 LECPRNSYTGEPPVGGHKDCEACPANMFTYQP 111
C +SY E G + C+ C
Sbjct: 285 RACGADSY--EMEEDGVRKCKKCEGPCRKVCN 314
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 37.1 bits (85), Expect = 0.006
Identities = 29/115 (25%), Positives = 33/115 (28%), Gaps = 13/115 (11%)
Query: 21 NQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREE-GSKAVQECVPVCGYGTYSPTG 75
+Q C CP G Y + VC CP YT S C PVC Y
Sbjct: 16 HQLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQE 75
Query: 76 LVP----CLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNF-CRVPTPG 125
EC Y +CP Q P RN C+ G
Sbjct: 76 CNRTHNRVCECKEGRYLEIE---FCLKHRSCPPGFGVVQAGTPERNTVCKRCPDG 127
Score = 37.1 bits (85), Expect = 0.006
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 26 TPCPRGFYQNNDRQG--VCLKCPMGTYTREEGSKAVQ-ECVPVCGYGTYS--PTGLVPCL 80
T P+ + + + +C KCP GTY ++ + + C P C Y+ CL
Sbjct: 2 TFPPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCAP-CPDHYYTDSWHTSDECL 60
Query: 81 EC----PRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFC 119
C Y + H C + C
Sbjct: 61 YCSPVCKELQYVKQECNRTHNRVCECKEGRYLEIEFCLKHRSC 103
Score = 35.6 bits (81), Expect = 0.023
Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 10/102 (9%)
Query: 2 DMNQVPRCLHCPAGTFAG--------INQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTRE 53
+ CL+C C G Y + CP G +
Sbjct: 52 SWHTSDECLYCSPVCKELQYVKQECNRTHNRVCECKEGRYLEIEFCLKHRSCPPGFGVVQ 111
Query: 54 EGSKAVQ-ECVPVC-GYGTYSPTGLVPCLECPRNSYTGEPPV 93
G+ C G+ + + PC + S G
Sbjct: 112 AGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLT 153
Score = 35.2 bits (80), Expect = 0.024
Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 15/133 (11%)
Query: 9 CLHCPAGTFA-----GINQKTCTPCPRGFYQNN-DRQGVCLKC----PMGTYTREEGSKA 58
C CP GT+ + C PCP +Y ++ CL C Y ++E +
Sbjct: 20 CDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECN-R 78
Query: 59 VQECVPVCGYGTYSPTGL-VPCLECPRNSYTGEPPVGGH-KDCEACPANMFTYQPAAPAR 116
V C G Y + CP + C+ CP F+ + ++ A
Sbjct: 79 THNRVCECKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAP 138
Query: 117 NFCRVPTPGAEYG 129
CR T + +G
Sbjct: 139 --CRKHTNCSVFG 149
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich
domain, TNF receptor, structural genomics, PSI protein
structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Length = 134
Score = 36.5 bits (84), Expect = 0.006
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 23 KTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPT--GLVPCL 80
++ C Y C KC G +E + C GTY GL CL
Sbjct: 1 RSLPSCKEDEYPVGSE--CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCL 58
Query: 81 ECPR 84
+C
Sbjct: 59 QCQM 62
Score = 35.8 bits (82), Expect = 0.011
Identities = 19/126 (15%), Positives = 32/126 (25%), Gaps = 20/126 (15%)
Query: 8 RCLHCPAGTFAGINQKTCTPCPRGFYQNND----RQGVCLKCPMGTYTREEGSKAVQECV 63
C + + + C C G+ VC CP GTY + +C+
Sbjct: 2 SLPSCKEDEYP-VGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG--LSKCL 58
Query: 64 P--VCGYGTY-------SPTGLVPCLECPRNSYTGEPPVGGHKDCEA---CPANMFTYQP 111
+C S T C C + C A +
Sbjct: 59 QCQMCDPAMGLRASRNCSRTENAVC-GCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKG 117
Query: 112 AAPARN 117
+++
Sbjct: 118 GTESQD 123
Score = 30.8 bits (69), Expect = 0.66
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 19/99 (19%)
Query: 7 PRCLHCPAGTF-AGINQKT----CTPCPRGFYQ------NNDRQGVCLKCPMGTYTREEG 55
C CP GT+ A +N + C C + VC C G + +
Sbjct: 37 TVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVC-GCSPGHFCIVQD 95
Query: 56 SKAVQECVP--VCGYGTY-----SPTGLVPCLECPRNSY 87
C G + + C + +
Sbjct: 96 GDHCAACRAYATSSPGQRVQKGGTESQDTLCTGHHHHHH 134
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion;
1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A*
2vme_A*
Length = 257
Score = 35.8 bits (82), Expect = 0.027
Identities = 21/166 (12%), Positives = 50/166 (30%), Gaps = 27/166 (16%)
Query: 319 PLGLASG-RIPDSSINATSE-----SPYLVRVNACSVPLIPGPRVQELLA----EKNVRL 368
P G S ++ ++++ +N + R + +
Sbjct: 4 PAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSK--DASRFDGSESWSSSVLDKNQ 61
Query: 369 FNVLRTLANMEVYVYRLAILVKGVVT---NDIVGRPTEIRFFYKQAESENFVVYFPNFNL 425
F + + + T D T + Y ++ N+V Y N
Sbjct: 62 F--------IVAGSDSVKH-FVAISTQGRGDHDQWVTSYKLRYTL-DNVNWVEY--NNGE 109
Query: 426 TMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGCE 471
+ + + I ++AR + + +Y ++ L++EL
Sbjct: 110 IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWELYALP 155
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 36.4 bits (83), Expect = 0.028
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 12/99 (12%)
Query: 7 PRCL-HCPAGTFA--GINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECV 63
RC+ CP + + C ++ + + +C+
Sbjct: 235 GRCVETCPPPYYHFQDWRCVNFSFCQDL---HHKCKNSRRQGCHQYVIHN------NKCI 285
Query: 64 PVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEAC 102
P C G + + C C + G K ++
Sbjct: 286 PECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSV 324
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 35.6 bits (81), Expect = 0.052
Identities = 15/115 (13%), Positives = 22/115 (19%), Gaps = 22/115 (19%)
Query: 9 CLHCPAGTFAGINQKTCTP-CPRGFYQNNDRQ-----------GVCLKCPMGTYTREEGS 56
C+ C +AG C P CP Y+ + G +
Sbjct: 218 CVACRHYYYAG----VCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHD--- 270
Query: 57 KAVQECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQP 111
EC+ C G + Q
Sbjct: 271 ---GECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQG 322
Score = 31.0 bits (69), Expect = 1.6
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 8/98 (8%)
Query: 8 RCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPM---GTYTREEGSKAVQECVP 64
L + + + K C + + +C K + Y ++ + C
Sbjct: 129 LILDAVSNNYI-VGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPS 187
Query: 65 VCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEAC 102
CG + EC + + C AC
Sbjct: 188 TCGKRACTENNECCHPECLGSCSAPDND----TACVAC 221
Score = 29.4 bits (65), Expect = 4.2
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 4 NQVPRCLHCPAGTFAGINQKTCTP-CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQEC 62
N + G I+ C CP GF +N + C+ C E K +
Sbjct: 254 NILSAESSDSEGFV--IHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTI 311
Query: 63 VPVCGYGTYSP 73
V
Sbjct: 312 DSVTSAQMLQG 322
Score = 28.3 bits (62), Expect = 8.2
Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 10/111 (9%)
Query: 1 MDMNQVPRCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQ 60
+ CP + T Y+ CP R ++ +
Sbjct: 141 GNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRA-CTENNE 199
Query: 61 ECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDC-EACPANMFTYQ 110
C P C +P C+ C Y G C ACP N + ++
Sbjct: 200 CCHPECLGSCSAPDNDTACVACRHYYYAGV--------CVPACPPNTYRFE 242
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 35.4 bits (80), Expect = 0.061
Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 27/114 (23%)
Query: 8 RCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKC-----PMGTYTREEGSKAVQ-- 60
+C++C + C +G + CL C P + GS+A Q
Sbjct: 506 QCVNCSHFLRGQECVEEC-RVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCA 564
Query: 61 ---------ECVPVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPAN 105
CV C G +P + P C+ CP N
Sbjct: 565 ACAHYKDSSSCVARCPSGVKPDLSYMPIWKYP----------DEEGICQPCPIN 608
Score = 35.0 bits (79), Expect = 0.095
Identities = 16/84 (19%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 11 HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGT 70
HCPA + P G Y C+ Y E C P
Sbjct: 246 HCPALVTYNTDTFESMHNPEGRYTFGAS---CVTTCPYNYLSTEVGSCTLVC-PPNNQEV 301
Query: 71 YSPTGLVPCLECPRNSYTGEPPVG 94
+ G C +C + +G
Sbjct: 302 TAEDGTQRCEKCSKPCARVCYGLG 325
Score = 29.2 bits (64), Expect = 4.9
Identities = 21/130 (16%), Positives = 29/130 (22%), Gaps = 8/130 (6%)
Query: 21 NQKTCTP-CPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGTYSPTGLVPC 79
+ C CP N D + P G YT CV C Y S
Sbjct: 239 HSGICELHCPALVTYNTD-TFESMHNPEGRYTFGA------SCVTTCPYNYLSTEVGSCT 291
Query: 80 LECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFCRVPTPGAEYGNFLDTRYQSS 139
L CP N+ G + + F +
Sbjct: 292 LVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIFG 351
Query: 140 FFFGCQDTFK 149
++F
Sbjct: 352 SLAFLPESFD 361
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 35.1 bits (80), Expect = 0.071
Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 23/112 (20%)
Query: 8 RCLHCPAGTFAGINQKTCTPCPRGFYQNNDR----QGVCLKCPMGTYTREEGSKAVQECV 63
C +C T + C C ++Q+ +R +C C GS+ C
Sbjct: 344 VCDNCQHNTMG----RNCEQCKPFYFQHPERDIRDPNLCEPCTCDPA----GSENGGICD 395
Query: 64 PVCGYGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPA 115
+ G C + V G + C+ C + P
Sbjct: 396 GYTDFSVGLIAGQCRC----------KLHVEGER-CDVCKEGFYDLSAEDPY 436
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.092
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 11/33 (33%)
Query: 313 ECKIIKPLGLASGRI----PDSS----INATSE 337
E + +K L + DS+ I AT E
Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKATME 47
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 34.4 bits (79), Expect = 0.12
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 11/58 (18%)
Query: 12 CPAGTFAGINQK-----TCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVP 64
C + C PC Y ++ C+ C G + + S C
Sbjct: 489 CAPNEMKNMQPGDVCCWICIPCEPYEYLVDEFT--CMDCGPGQWPTADLSG----CYN 540
Score = 32.4 bits (74), Expect = 0.54
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 9 CLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLK 44
C+ C + +++ TC C G + D G C
Sbjct: 507 CIPCEPYEYL-VDEFTCMDCGPGQWPTADLSG-CYN 540
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 33.9 bits (76), Expect = 0.19
Identities = 13/89 (14%), Positives = 16/89 (17%), Gaps = 8/89 (8%)
Query: 11 HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGT 70
CP P P YQ CP + CV C
Sbjct: 239 RCPQPLVYNKLTFQLEPNPHTKYQYGGVC--VASCPHNFVVDQ------TSCVRACPPDK 290
Query: 71 YSPTGLVPCLECPRNSYTGEPPVGGHKDC 99
+ P + G
Sbjct: 291 MEVDKNGLKMCEPCGGLCPKACEGTGSGS 319
Score = 28.5 bits (62), Expect = 7.9
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 21/103 (20%)
Query: 8 RCLHCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCG 67
+CL C + G+ C G + + C C EC P+ G
Sbjct: 497 QCLSCRNYSRGGVCVTHCNFLN-GEPREFAHEAECFSC-------------HPECQPMEG 542
Query: 68 YGTYSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQ 110
T + +G C +C +CP + +
Sbjct: 543 TATCNGSGSDTCAQCAHFRDGPHC-------VSSCPHGVLGAK 578
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 32.8 bits (74), Expect = 0.35
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 440 TLPKFVQARFVILGIVSYMDNACLKFELMGCE 471
+ +RF+ + ++ + L+ EL GC+
Sbjct: 614 FFNPPIISRFIRIIPKTWNQSIALRLELFGCD 645
Score = 29.4 bits (65), Expect = 4.5
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 407 FYKQAESENFVVYFPNFNLTMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFE 466
+K + N + + N + + + + V AR++ + + L+ E
Sbjct: 429 IFKGNSTRNVMYFGGNSDAS--------TIKENQIDPPVVARYIRISPTGSYNKPALRLE 480
Query: 467 LMGCE 471
L GCE
Sbjct: 481 LQGCE 485
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 32.5 bits (73), Expect = 0.46
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 440 TLPKFVQARFVILGIVSYMDNACLKFELMGCE 471
+L + R++ + S++ L+ E++GCE
Sbjct: 734 SLDPPLLTRYLRIHPQSWVHQIALRMEVLGCE 765
Score = 29.0 bits (64), Expect = 6.3
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 407 FYKQAESENFVVYFPNFNLTMRDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFE 466
Y+ + +V+F N + + + + AR++ L Y + L+ E
Sbjct: 552 TYRGNSTGTLMVFFGNVDSS--------GIKHNIFNPPIIARYIRLHPTHYSIRSTLRME 603
Query: 467 LMGCEEPKVEPLLGYDYGY 485
LMGC+ LG +
Sbjct: 604 LMGCDLNSCSMPLGMESKA 622
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 32.3 bits (73), Expect = 0.46
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 1/84 (1%)
Query: 108 TYQPAAPARNFCRVPTPGAEYGNFLDTRYQSSFFFGCQDTFKLAGQ-TDKNDNVVRCQAN 166
+Y+ A + P G + ++ C +K+ + + + C +
Sbjct: 274 SYRAAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKD 333
Query: 167 GIWDFGDLRCEGPVCSDPGRPVDG 190
G W C+
Sbjct: 334 GTWSNKIPTCKKNEIDLESELKSE 357
Score = 30.3 bits (68), Expect = 1.9
Identities = 6/59 (10%), Positives = 15/59 (25%), Gaps = 1/59 (1%)
Query: 212 DTRYQSSFFFGCQDTFKLAGQ-TDKNDNVVRCQANGIWDFGDLRCEGPVCSDPGRPVDG 269
++ C +K+ + + + C +G W C+
Sbjct: 299 KYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKKNEIDLESELKSE 357
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 31.8 bits (71), Expect = 0.62
Identities = 34/213 (15%), Positives = 50/213 (23%), Gaps = 18/213 (8%)
Query: 122 PTPGAEYG----NFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDL-RC 176
P P G R+ S F C+ F + G + V CQAN +W L C
Sbjct: 73 PEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNG-----NKSVWCQANNMWGPTRLPTC 127
Query: 177 EGPVCSDPGRPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKN 236
+ G E R + S F F + L
Sbjct: 128 VSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPK 187
Query: 237 DNVVRCQ-------ANGIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEV 289
V W D+ + + S + + D +
Sbjct: 188 VTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWL-NGK 246
Query: 290 QFGCNKPGYILINPRPITCVREPECKIIKPLGL 322
+F C P T + L
Sbjct: 247 EFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYT 279
Score = 30.3 bits (67), Expect = 1.8
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 17/92 (18%)
Query: 260 CSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVRE-------- 311
C P ++G +++ + G+ +++ C+ + LI + + C+ +
Sbjct: 4 CGSPPPILNG-RISYYSTPIAV----GTVIRYSCS-GTFRLIGEKSLLCITKDKVDGTWD 57
Query: 312 ---PECKIIKPLGLASGRIPDSSINATSESPY 340
P+C+ I +PY
Sbjct: 58 KPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPY 89
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 31.9 bits (71), Expect = 0.63
Identities = 30/310 (9%), Positives = 59/310 (19%), Gaps = 15/310 (4%)
Query: 11 HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGT 70
CP Y KCP CV C
Sbjct: 237 QCPQTFVYNPTTFQLEHNFNAKYTYGAFC--VKKCPHNFVVDS------SSCVRACPSSK 288
Query: 71 Y-SPTGLVPCLECPRNSYTGEPPVGGHKDCEAC----PANMFTYQPAAPARNFCRVPTPG 125
+ + + G + +N+ + G
Sbjct: 289 MEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTG 348
Query: 126 AEYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDPG 185
+ T + + + + G V
Sbjct: 349 IHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGL 408
Query: 186 RPVDGYQVATSYEQVRYDDEQYGNFLDTRYQSSFFFGCQDTFKLAGQTDKNDNVVRCQAN 245
+ Q + Q + E + S+ + + T V+R
Sbjct: 409 SLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRK 468
Query: 246 GIWDFGDLRCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRP 305
+ +CS G G S + + +
Sbjct: 469 AENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSIC 528
Query: 306 ITCVREPECK 315
+ C +P+C+
Sbjct: 529 VEC--DPQCE 536
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 31.9 bits (71), Expect = 0.77
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 11 HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGT 70
CP P G Y KCP + GS CV CG +
Sbjct: 239 TCPPLMLYNPTTYQMDVNPEGKYSFGATC--VKKCPRNYVVTDHGS-----CVRACGADS 291
Query: 71 Y--SPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQPAAPARNFC 119
Y G+ C +C +G + ++ N + +
Sbjct: 292 YEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 31.3 bits (71), Expect = 1.0
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 28 CPRGFYQNNDRQGVCLKC-PMGTYTREEGSKAVQECVPVCG 67
C +Y + G C G++ E + +CVPVCG
Sbjct: 31 CEEPYYYMENGGGGEYHCAGNGSWVNEVLGPELPKCVPVCG 71
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 30.8 bits (69), Expect = 1.3
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 413 SENFVVYFPNFNLTM-RDPGNYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGCE 471
E+++VY N + + + E+ + L + RFV + ++ L+ EL GC
Sbjct: 228 GEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLELFGCR 287
Query: 472 EPKVEPLLGYDYGYSPCVDNEPPV 495
D++
Sbjct: 288 VTDAPCSNMLGMLSGLIADSQISA 311
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI
BIG-open NESG, cell WALL, hydrolase,
peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Length = 103
Score = 29.0 bits (65), Expect = 1.4
Identities = 10/98 (10%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 489 VDNEPPVFQNCPQQPIIVRKGPNGIEPVNITEPVAVDNSGSIARLEIKPQSFKTPMITFH 548
+ P + G + + + A+D ++ + +
Sbjct: 6 TSDLEPKLTV--PVGATIHVGDSFVPMAEVL---AIDKEDG----DLTSKIKVDGEVDTT 56
Query: 549 DM---AVKYIAYDFDGNVAICEINITVVDETPPLLSCP 583
+ Y D G+ + +TV P
Sbjct: 57 KAGTYVLTYTVTDSKGHEVTAKQTVTVKVREEVKNDKP 94
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin
domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium
discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Length = 254
Score = 30.4 bits (68), Expect = 1.7
Identities = 14/171 (8%), Positives = 43/171 (25%), Gaps = 23/171 (13%)
Query: 322 LASGRIPDSSINATSE-----SPYLVRVNACSVPLIPGPRVQELLAEKNVRLFNVLRTLA 376
+ + ++ + + +N + + +
Sbjct: 8 VQLLANAQCHLRTSTNYNGVHTQFNSALNYKNNGTNTIDGSEAWCSSIVDT--------- 58
Query: 377 N--MEVYVYRLAILVKGVVT---NDIVGRPTEIRFFYKQAESENFVVYFPNFNLTMRDPG 431
N + V D T + Y ++ ++ Y +T
Sbjct: 59 NQYIVAGCEVPRT-FMCVALQGRGDADQWVTSYKIRYSL-DNVSWFEYRNGAAVT--GVT 114
Query: 432 NYGELAMITLPKFVQARFVILGIVSYMDNACLKFELMGCEEPKVEPLLGYD 482
+ + ++AR + + +++ + L+ E +G D
Sbjct: 115 DRNTVVNHFFDTPIRARSIAIHPLTWNGHISLRCEFYTQPVQSSVTQVGAD 165
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 30.1 bits (68), Expect = 2.1
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 119 CRVPTPGAEYGNFL------DTRYQSSFFFGCQDTFK----LAGQTDKNDNVVRCQANGI 168
C P G+F Y++ + C + + AG + V C A GI
Sbjct: 2 CGQPRNLPN-GDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGI 60
Query: 169 WDFGDLRCEGPVCSDP-GRPV 188
W + P C G+PV
Sbjct: 61 WKNEQKGEKIPRCLPVCGKPV 81
Score = 29.7 bits (67), Expect = 2.7
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 212 DTRYQSSFFFGCQDTFK----LAGQTDKNDNVVRCQANGIWDFGDLRCEGPVCSDP-GRP 266
Y++ + C + + AG + V C A GIW + P C G+P
Sbjct: 21 VNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPVCGKP 80
Query: 267 V 267
V
Sbjct: 81 V 81
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 30.3 bits (67), Expect = 2.5
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 12/81 (14%)
Query: 8 RCL-HCPAGTFA--GINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVP 64
RC+ CP + + C ++ + + +C+P
Sbjct: 236 RCVETCPPPYYHFQDWRCVNFSFCQDL---HHKCKNSRRQGCHQYVIHN------NKCIP 286
Query: 65 VCGYGTYSPTGLVPCLECPRN 85
C G + + C C
Sbjct: 287 ECPSGYTMNSSNLLCTPCLGP 307
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 30.0 bits (66), Expect = 2.8
Identities = 15/100 (15%), Positives = 19/100 (19%), Gaps = 11/100 (11%)
Query: 11 HCPAGTFAGINQKTCTPCPRGFYQNNDRQGVCLKCPMGTYTREEGSKAVQECVPVCGYGT 70
CP P G Y C+K G R+ G+ CV C
Sbjct: 241 ECPPMRKYNPTTYVLETNPEGKYAYGAT---CVKECPGHLLRDNGA-----CVRSCPQDK 292
Query: 71 YSPTGLVPCLECPRNSYTGEPPVGGHKDCEACPANMFTYQ 110
G P +
Sbjct: 293 MDKGG---ECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTV 329
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 29.2 bits (65), Expect = 4.3
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 445 VQARFV-ILGIVSYMDNACLKFELMGCE 471
+ RF+ I + L+ EL+GCE
Sbjct: 421 LSTRFIRIYPERATHGGLGLRMELLGCE 448
Score = 29.2 bits (65), Expect = 4.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 440 TLPKFVQARFVILGIVSYMDNACLKFELMGCE 471
PK + RFV + ++ ++FE+ GC+
Sbjct: 258 VFPKPLITRFVRIKPATWETGISMRFEVYGCK 289
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B)
receptor, CIS-trans isomerization, CCP module, sushi
domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB:
1ss2_A
Length = 68
Score = 26.6 bits (58), Expect = 5.6
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 254 RCEGPVCSDPGRPVDGYQVATSYEQVRYDDEQGSEVQFGCNKPGYILINPRPITCVR--- 310
+G T + D G+ V+F C+ P + L+ C +
Sbjct: 3 EFVRICSKSYLTLENGKVFLTGGDLPALD---GARVEFRCD-PDFHLVGSSRSVCSQGQW 58
Query: 311 ---EPECKI 316
+P C++
Sbjct: 59 STPKPHCQV 67
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
unknown function; 2.20A {Bacteroides thetaiotaomicron}
SCOP: c.108.1.25
Length = 142
Score = 27.3 bits (60), Expect = 8.4
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 553 KYIAYDFDGNVAICEINITVVDETPPLLSCPQSYIIELVDK 593
IA DFDG T+V+ P + + +E +
Sbjct: 4 MTIAVDFDG---------TIVEHRYPRIGEEIPFAVETLKL 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.440
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,989,427
Number of extensions: 616472
Number of successful extensions: 1995
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1464
Number of HSP's successfully gapped: 273
Length of query: 642
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 542
Effective length of database: 3,909,693
Effective search space: 2119053606
Effective search space used: 2119053606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)