BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy834
(926 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28298|RRBP1_CANFA Ribosome-binding protein 1 OS=Canis familiaris GN=RRBP1 PE=2 SV=1
Length = 1534
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/297 (16%), Positives = 118/297 (39%), Gaps = 18/297 (6%)
Query: 578 QGELSPPTPGPNPHSRVNPNPNSRAN--PNPNPNSRANPNLSRRAQANNSAQNPLPEVSS 635
QG+ + TP + PN + + PN S PN ++ + AQN +V
Sbjct: 348 QGKKAEGTPNQGKKAEGAPNQGKKTDGAPNQGKKSEGAPNQGKKVEG---AQNQGKKVEG 404
Query: 636 SPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTK 695
N + + + + + + + E+G+PN + + S N QG + +
Sbjct: 405 VQNQGKKAEGAQNQGKKAEGTSSQGRKEEGTPNLGKKAEGSPN-----QGKKVEVVQNQS 459
Query: 696 YTLQSTKSNLSRRAQAN-------NSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTT 748
++ N ++A+ + A N +V + N + + +P +V+ +
Sbjct: 460 KKVEGA-PNQGKKAEGSQNQGKKTEGASNQGKKVDGAQNQGKKAEGAPNQGKKVEGAQNQ 518
Query: 749 RSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNT 808
+ + +P + + + +G+PN + + + N +G+P+ + +PN
Sbjct: 519 GKKAEGTPNQGKKAEGAQNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQ 578
Query: 809 RSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSS 865
+ +++ +G+P +GAP + +++PN + +PN + + +
Sbjct: 579 GKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGA 635
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/294 (17%), Positives = 113/294 (38%), Gaps = 26/294 (8%)
Query: 596 PNPNSRANPNPNPNSR------------ANPNLSRRAQAN-------NSAQNPLPEVSSS 636
PN +A +PN + PN ++A+ + A N +V +
Sbjct: 436 PNLGKKAEGSPNQGKKVEVVQNQSKKVEGAPNQGKKAEGSQNQGKKTEGASNQGKKVDGA 495
Query: 637 PNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKY 696
N + + +P +V+ + +G+PN + + + N +G+P +
Sbjct: 496 QNQGKKAEGAPNQGKKVEGAQNQGKKAEGTPNQGKKAEGAQNQGKKAEGAPNQGKKAEGA 555
Query: 697 TLQSTKS----NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRV 752
Q K+ N ++A+ A N + ++PN + + +P + + +P +
Sbjct: 556 PNQGKKAEGAPNQGKKAEG---APNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKA 612
Query: 753 QSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRV 812
+++P + + + +G+PN + + + N +G+ + + +PN +
Sbjct: 613 EAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAQNQGKKAEGAPNQGKKA 672
Query: 813 QSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSA 866
+ +G +GAP + + +PN + SPN +V +SA
Sbjct: 673 DLVANQGTKAEGVAGQGKKAEGAPNQGKKGEGTPNQGKKSEGSPNQGKKVDASA 726
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/253 (16%), Positives = 96/253 (37%), Gaps = 24/253 (9%)
Query: 596 PNPNSRANPNPNPNSRAN--PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV 653
PN + N +A PN ++A+ AQN + +PN + + +P +
Sbjct: 506 PNQGKKVEGAQNQGKKAEGTPNQGKKAEG---AQNQGKKAEGAPNQGKKAEGAPNQGKKA 562
Query: 654 QSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANN 713
+ + +G+PN + +++ N +G+P N ++A+
Sbjct: 563 EGAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAP----------------NQGKKAEG-- 604
Query: 714 SAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQ 773
A N + ++PN + + +P + + +P + + +P + + + +
Sbjct: 605 -APNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAQNQGKKAE 663
Query: 774 GSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQ 833
G+PN + AN + +G + +PN + + + +GSP V
Sbjct: 664 GAPNQGKKADLVANQGTKAEGVAGQGKKAEGAPNQGKKGEGTPNQGKKSEGSPNQGKKVD 723
Query: 834 GAPRIHSREQSSP 846
+ R +S+P
Sbjct: 724 ASANQSKRAESAP 736
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/251 (17%), Positives = 95/251 (37%), Gaps = 10/251 (3%)
Query: 597 NPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSS 656
N + +A PN +A L++ +A AQN +V +PN + + +V+ +
Sbjct: 207 NQSRKAEGAPNQGKKAEGALNQGKKAE-GAQNQGKKVEVAPNQGKKAEGGQNQGKKVEGA 265
Query: 657 LTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQ 716
+G+PN + + + N G+P + Q K+ AQ
Sbjct: 266 QNQGKKAEGTPNQGKKAEGAPNQGKKTDGAPNQGKKSEGAPNQGKKAE---------GAQ 316
Query: 717 NPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSP 776
N +V +PN + + +V+ + + + +P + + + G+P
Sbjct: 317 NQGKKVEVAPNQGKKAEGGQNQGKKVEGAQNQGKKAEGTPNQGKKAEGAPNQGKKTDGAP 376
Query: 777 NTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAP 836
N + + + N +G+ + V+ N + + + +G+ + +G P
Sbjct: 377 NQGKKSEGAPNQGKKVEGAQNQGKKVEGVQNQGKKAEGAQNQGKKAEGTSSQGRKEEGTP 436
Query: 837 RIHSREQSSPN 847
+ + + SPN
Sbjct: 437 NLGKKAEGSPN 447
Score = 36.6 bits (83), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 13/162 (8%)
Query: 704 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQ 763
N ++A+ QN +V + N + + +P + + +P + +P + +
Sbjct: 247 NQGKKAEG---GQNQGKKVEGAQNQGKKAEGTPNQGKKAEGAPNQGKKTDGAPNQGKKSE 303
Query: 764 SSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQ 823
G+PN + + + N + +P+ + N +V+ + +
Sbjct: 304 ----------GAPNQGKKAEGAQNQGKKVEVAPNQGKKAEGGQNQGKKVEGAQNQGKKAE 353
Query: 824 GSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSS 865
G+P +GAP + +PN + +PN +V+ +
Sbjct: 354 GTPNQGKKAEGAPNQGKKTDGAPNQGKKSEGAPNQGKKVEGA 395
>sp|Q9P2E9|RRBP1_HUMAN Ribosome-binding protein 1 OS=Homo sapiens GN=RRBP1 PE=1 SV=4
Length = 1410
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/287 (16%), Positives = 104/287 (36%), Gaps = 18/287 (6%)
Query: 564 PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPN----SRANPNPNPNSRANPNLSRR 619
P T Q GTQ + PN + PN + PN + PN ++
Sbjct: 192 PATGTTQGKKAEGTQNQSKKAEGAPNQGRKAEGTPNQGKKTEGTPNQGKKAEGTPNQGKK 251
Query: 620 AQAN-------NSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSR 672
A+ AQN +V ++PN +V+ +PT + + + +G+ N +
Sbjct: 252 AEGTPNQGKKAEGAQNQGKKVDTTPNQGKKVEGAPTQGRKAEGAQNQAKKVEGAQNQGKK 311
Query: 673 VQSSANIRSAEQGSPISRTRFTKYTLQSTKS----NLSRRAQANNSAQNPLPEVSSSPNT 728
+ + N +G+ + Q K+ N ++A+ AQN + + N
Sbjct: 312 AEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEG---AQNQGKKAEGAQNQ 368
Query: 729 RSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANI 788
+ + + + + + +V+ + + + + +G+ N + + + N
Sbjct: 369 GKKAEGAQNQGKKSEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQ 428
Query: 789 RSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGA 835
+G+ + + + N + + + +G+ V+GA
Sbjct: 429 GKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGA 475
>sp|Q8ILR9|YPF17_PLAF7 Protein PF14_0175 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0175
PE=4 SV=1
Length = 4662
Score = 38.1 bits (87), Expect = 0.30, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 105/295 (35%), Gaps = 32/295 (10%)
Query: 636 SPNTRSRVQSSPTTRSRVQSSLTIQSA-EQGSPNTRSRVQSSANIRSAEQGSP------- 687
SP + +Q + +S +++S+ S+ ++ PN R+ N+++ Q +
Sbjct: 3822 SPTISNSLQQTNMYQSDMKNSIIYNSSIQEKDPNNRNYNTQGNNVQTMNQSNGNVYNVNV 3881
Query: 688 -----------ISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSS-----PNTRSR 731
++ F L SN + + +A+ S N +S PN +
Sbjct: 3882 PNRKQSNLNQYVNPMNFLIQVLNKCNSNTNGQVKASASNANVNYANVNSTSLNQPNINNV 3941
Query: 732 VQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSA 791
+ P + + P + + P + + I + PN + + NI +
Sbjct: 3942 GMNQPNINNVGMNQPNINNVGMNQPNINNVGMNQPNINNVSMNQPNINNVNMNQPNINNV 4001
Query: 792 EQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTR--STVQGAPRIHSREQSSPNTH 849
P+I + NT + + +T S P+T S + + S Q+S N
Sbjct: 4002 SMNQPNINNFSMNQSNTNNFNMNKPSTSSFSMNQPSTNNFSMNKSSTNNFSINQTSANNF 4061
Query: 850 SAEQRSPNTRSRVQSSATTRSTEQRSRSRSPLTRSTEQGSPNIRSTEQRASRTRS 904
S Q S N S + S ST + P T + PNI + T +
Sbjct: 4062 SMHQPSTNNFSMNKPSTNNFSTNK------PSTNNFSMNQPNINNISMNQPNTNN 4110
Score = 35.4 bits (80), Expect = 1.9, Method: Composition-based stats.
Identities = 62/279 (22%), Positives = 109/279 (39%), Gaps = 24/279 (8%)
Query: 589 NPHSR-VNPNPNSRANPNPNPNSRANPNLSRRAQAN-NSAQNP---LPEVSSSPNTRSRV 643
+P++R N N+ N + + N N+ R Q+N N NP L +V + N+ +
Sbjct: 3853 DPNNRNYNTQGNNVQTMNQSNGNVYNVNVPNRKQSNLNQYVNPMNFLIQVLNKCNSNTNG 3912
Query: 644 QSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSP-ISRTRFTKYTLQSTK 702
Q + + + + S PN + + NI + P I+ + + +
Sbjct: 3913 QVKASASNANVNYANVNSTSLNQPNINNVGMNQPNINNVGMNQPNINNVGMNQPNINNVG 3972
Query: 703 SNLSRRAQANNSAQNPLPEVSS----SPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTT 758
N + NN + N P +++ PN + + P + + T + + P+T
Sbjct: 3973 MN---QPNINNVSMNQ-PNINNVNMNQPNINNVSMNQPNINNFSMNQSNTNNFNMNKPST 4028
Query: 759 RSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTT 818
S S Q S N S +SS N S Q S + S Q S N S + S
Sbjct: 4029 SSF--------SMNQPSTNNFSMNKSSTNNFSINQTSANNFSMHQPSTNNFSMNKPSTNN 4080
Query: 819 HSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPN 857
S + P+T + P I++ + PNT++ + N
Sbjct: 4081 FSTNK--PSTNNFSMNQPNINNISMNQPNTNNVHMNNLN 4117
>sp|Q60528|MUC1_MESAU Mucin-1 OS=Mesocricetus auratus GN=MUC1 PE=2 SV=1
Length = 676
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 103/251 (41%), Gaps = 33/251 (13%)
Query: 622 ANNSAQNPLPEVSSSPNTRSRV----------QSSPTTRSRVQSSLTIQSAEQGSPNTRS 671
A +SA P SS+P T S V S+P T S V S+ T + +P T S
Sbjct: 53 AVDSATTPGHSGSSAPPTSSAVNSATTPGHSGSSAPPTSSAVNSATTPVHSGSSAPVTSS 112
Query: 672 RVQSSAN-IRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRS 730
V S+ + S P S + T + S+ + A NSA P+ SS+P T S
Sbjct: 113 AVNSATTPVHSGSSAPPTSSAVNSATTPVHSGSSAPVTSSAVNSATTPVHSGSSAPVTSS 172
Query: 731 RVQSSPTTRSRVQSSPTTRSRV----------QSSPTTRSRVQSSLTIQSAEQGSPNTRS 780
V S+ T S+P T S V S+P T S V S+ T + +P T S
Sbjct: 173 AVDSATTPVHSGSSAPPTSSAVNSATTPVHSGSSAPVTSSAVNSATTPVHSGSSAPVTSS 232
Query: 781 RVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLT-THSAEQGSPTTRSTVQGAPRIH 839
V S+ GS +P T S V S+ T HS PT+ + +H
Sbjct: 233 AVNSA--TTPVHSGS--------SAPPTSSVVNSATTPVHSGSSAPPTSSAVNLATTPVH 282
Query: 840 SREQSSPNTHS 850
S S+P T+S
Sbjct: 283 SGS-STPATNS 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.122 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,452,235
Number of Sequences: 539616
Number of extensions: 13815677
Number of successful extensions: 99129
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 2407
Number of HSP's that attempted gapping in prelim test: 65811
Number of HSP's gapped (non-prelim): 22927
length of query: 926
length of database: 191,569,459
effective HSP length: 127
effective length of query: 799
effective length of database: 123,038,227
effective search space: 98307543373
effective search space used: 98307543373
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)