Query psy834
Match_columns 926
No_of_seqs 243 out of 1197
Neff 2.2
Searched_HMMs 46136
Date Sat Aug 17 01:11:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 100.0 4.5E-42 9.8E-47 398.8 18.5 202 379-669 949-1151(1163)
2 KOG0964|consensus 100.0 9.8E-40 2.1E-44 370.0 10.8 255 338-661 914-1174(1200)
3 TIGR02169 SMC_prok_A chromosom 100.0 1.5E-29 3.2E-34 284.0 18.4 198 380-667 959-1157(1164)
4 KOG0018|consensus 100.0 4.6E-30 1E-34 294.2 14.3 256 315-666 868-1131(1141)
5 KOG0996|consensus 99.9 5E-26 1.1E-30 262.9 15.6 192 380-660 1079-1271(1293)
6 TIGR02168 SMC_prok_B chromosom 99.9 2.9E-23 6.3E-28 231.8 17.8 199 380-667 966-1172(1179)
7 KOG0933|consensus 99.8 8.8E-20 1.9E-24 209.6 15.2 151 380-585 966-1117(1174)
8 PF02463 SMC_N: RecF/RecN/SMC 99.4 6.6E-14 1.4E-18 133.3 2.8 84 534-667 135-219 (220)
9 PRK02224 chromosome segregatio 99.1 2.3E-09 5E-14 121.8 18.4 93 518-660 766-867 (880)
10 PRK03918 chromosome segregatio 98.9 6.6E-08 1.4E-12 109.6 19.1 97 519-664 773-871 (880)
11 KOG0979|consensus 98.7 1.9E-07 4.1E-12 109.9 16.7 152 380-585 836-996 (1072)
12 PRK10869 recombination and rep 98.7 2.5E-07 5.5E-12 103.2 16.6 98 518-664 411-510 (553)
13 TIGR00634 recN DNA repair prot 98.7 3.4E-07 7.3E-12 101.6 16.4 98 518-664 421-520 (563)
14 PHA02562 46 endonuclease subun 98.5 1.4E-06 3E-11 94.3 14.6 89 521-660 454-550 (562)
15 TIGR03185 DNA_S_dndD DNA sulfu 98.3 2.6E-05 5.6E-10 88.2 17.5 90 426-557 484-573 (650)
16 COG0419 SbcC ATPase involved i 98.0 9.2E-05 2E-09 86.6 16.4 178 399-663 717-899 (908)
17 PRK01156 chromosome segregatio 97.9 0.00031 6.8E-09 81.4 17.7 90 528-666 794-888 (895)
18 TIGR02168 SMC_prok_B chromosom 97.8 8.4E-05 1.8E-09 85.1 11.0 84 377-461 970-1053(1179)
19 cd03278 ABC_SMC_barmotin Barmo 97.8 1.7E-05 3.6E-10 77.4 4.6 92 527-667 105-196 (197)
20 KOG0250|consensus 97.7 0.00044 9.6E-09 83.1 13.3 98 520-667 970-1072(1074)
21 cd03275 ABC_SMC1_euk Eukaryoti 97.5 6.9E-05 1.5E-09 74.7 3.1 92 523-662 143-234 (247)
22 cd03273 ABC_SMC2_euk Eukaryoti 97.2 0.0003 6.6E-09 70.0 4.2 87 530-666 161-247 (251)
23 TIGR00618 sbcc exonuclease Sbc 97.2 0.0063 1.4E-07 72.6 15.6 91 527-666 942-1039(1042)
24 PRK10246 exonuclease subunit S 97.1 0.018 3.9E-07 69.4 17.9 107 518-676 930-1043(1047)
25 cd03239 ABC_SMC_head The struc 97.0 0.001 2.3E-08 64.4 5.4 88 524-661 85-172 (178)
26 cd03274 ABC_SMC4_euk Eukaryoti 96.9 0.0015 3.3E-08 64.8 5.3 92 522-662 114-205 (212)
27 cd03241 ABC_RecN RecN ATPase i 96.8 0.0014 3.1E-08 66.7 4.6 88 530-666 165-252 (276)
28 PF13514 AAA_27: AAA domain 96.6 0.036 7.7E-07 67.0 14.9 88 521-658 1011-1103(1111)
29 COG0497 RecN ATPase involved i 96.5 0.055 1.2E-06 62.5 14.9 95 518-661 412-508 (557)
30 cd03272 ABC_SMC3_euk Eukaryoti 96.4 0.0032 7E-08 61.6 4.0 84 530-663 153-237 (243)
31 PF13166 AAA_13: AAA domain 95.9 0.57 1.2E-05 53.3 19.0 35 517-554 485-519 (712)
32 cd03227 ABC_Class2 ABC-type Cl 95.7 0.013 2.7E-07 55.4 4.5 84 533-665 75-159 (162)
33 COG1136 SalX ABC-type antimicr 95.6 0.0099 2.1E-07 61.5 3.6 78 531-660 138-216 (226)
34 cd03270 ABC_UvrA_I The excisio 95.5 0.015 3.3E-07 57.8 4.2 77 532-659 134-211 (226)
35 TIGR00606 rad50 rad50. This fa 95.5 0.25 5.4E-06 61.1 15.2 60 402-461 1095-1154(1311)
36 PRK00064 recF recombination pr 95.4 0.22 4.8E-06 53.5 12.8 158 391-585 142-313 (361)
37 cd03235 ABC_Metallic_Cations A 95.2 0.018 3.9E-07 55.6 3.7 75 532-658 129-204 (213)
38 TIGR02203 MsbA_lipidA lipid A 95.2 0.014 3E-07 64.1 3.0 73 534-659 468-540 (571)
39 TIGR02211 LolD_lipo_ex lipopro 95.1 0.016 3.5E-07 56.0 3.1 73 534-658 140-213 (221)
40 cd03240 ABC_Rad50 The catalyti 94.9 0.028 6.1E-07 55.4 4.0 84 532-663 112-199 (204)
41 TIGR02673 FtsE cell division A 94.8 0.025 5.5E-07 54.5 3.3 73 534-658 136-209 (214)
42 PRK04778 septation ring format 94.7 0.048 1E-06 61.8 5.9 71 380-457 456-527 (569)
43 cd03236 ABC_RNaseL_inhibitor_d 94.6 0.019 4.1E-07 58.7 2.1 76 532-659 136-212 (255)
44 cd03225 ABC_cobalt_CbiO_domain 94.5 0.038 8.2E-07 53.2 3.8 74 533-658 132-206 (211)
45 cd03271 ABC_UvrA_II The excisi 94.5 0.036 7.8E-07 57.7 3.8 78 531-657 165-242 (261)
46 PRK11264 putative amino-acid A 94.4 0.038 8.2E-07 54.6 3.7 76 532-659 141-217 (250)
47 cd03259 ABC_Carb_Solutes_like 94.4 0.034 7.4E-07 53.7 3.3 75 533-659 128-204 (213)
48 PRK14257 phosphate ABC transpo 94.4 0.038 8.2E-07 58.6 3.9 85 532-669 222-310 (329)
49 cd03268 ABC_BcrA_bacitracin_re 94.4 0.035 7.5E-07 53.5 3.3 75 533-659 124-199 (208)
50 cd03276 ABC_SMC6_euk Eukaryoti 94.4 0.042 9.1E-07 54.1 3.8 83 527-657 101-186 (198)
51 PRK11629 lolD lipoprotein tran 94.3 0.034 7.3E-07 54.7 2.9 73 533-657 143-216 (233)
52 cd03269 ABC_putative_ATPase Th 94.2 0.037 8.1E-07 53.3 3.2 76 532-659 125-201 (210)
53 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.2 0.037 8E-07 53.5 3.1 73 533-657 138-211 (218)
54 TIGR00960 3a0501s02 Type II (G 94.2 0.04 8.8E-07 53.3 3.3 72 534-657 137-209 (216)
55 PRK09493 glnQ glutamine ABC tr 94.2 0.044 9.4E-07 54.0 3.6 74 534-659 135-209 (240)
56 TIGR02324 CP_lyasePhnL phospho 94.2 0.044 9.5E-07 53.3 3.5 76 533-660 147-223 (224)
57 cd03266 ABC_NatA_sodium_export 94.1 0.038 8.2E-07 53.4 3.0 76 532-659 133-209 (218)
58 cd03261 ABC_Org_Solvent_Resist 94.1 0.039 8.4E-07 54.2 3.0 75 533-659 134-210 (235)
59 PRK13538 cytochrome c biogenes 94.1 0.034 7.4E-07 53.8 2.6 69 533-653 127-195 (204)
60 PRK11174 cysteine/glutathione 94.1 0.048 1E-06 60.5 4.1 72 535-659 485-556 (588)
61 PRK11614 livF leucine/isoleuci 94.0 0.042 9E-07 54.1 3.1 75 533-659 135-210 (237)
62 TIGR03608 L_ocin_972_ABC putat 94.0 0.044 9.5E-07 52.4 3.1 71 533-655 132-202 (206)
63 PRK15112 antimicrobial peptide 94.0 0.04 8.7E-07 55.8 3.0 75 533-659 147-223 (267)
64 PRK11124 artP arginine transpo 93.9 0.049 1.1E-06 53.7 3.4 74 534-659 140-214 (242)
65 cd03226 ABC_cobalt_CbiO_domain 93.9 0.053 1.1E-06 52.3 3.5 74 533-658 124-198 (205)
66 PRK13643 cbiO cobalt transport 93.9 0.048 1E-06 56.1 3.4 76 532-659 141-217 (288)
67 cd03260 ABC_PstB_phosphate_tra 93.9 0.053 1.1E-06 52.9 3.4 74 533-659 139-213 (227)
68 cd03258 ABC_MetN_methionine_tr 93.8 0.05 1.1E-06 53.3 3.1 75 533-659 138-214 (233)
69 cd03252 ABCC_Hemolysin The ABC 93.8 0.065 1.4E-06 52.6 3.9 75 532-659 135-209 (237)
70 cd03369 ABCC_NFT1 Domain 2 of 93.7 0.084 1.8E-06 51.0 4.5 75 532-659 122-196 (207)
71 cd03256 ABC_PhnC_transporter A 93.7 0.05 1.1E-06 53.2 3.0 76 532-659 141-218 (241)
72 cd03218 ABC_YhbG The ABC trans 93.7 0.065 1.4E-06 52.3 3.8 76 532-659 130-206 (232)
73 cd03292 ABC_FtsE_transporter F 93.7 0.062 1.3E-06 51.7 3.6 73 534-658 135-208 (214)
74 PRK10619 histidine/lysine/argi 93.7 0.063 1.4E-06 53.7 3.7 76 532-659 149-225 (257)
75 PRK13540 cytochrome c biogenes 93.7 0.04 8.6E-07 53.2 2.3 69 534-654 126-194 (200)
76 cd03231 ABC_CcmA_heme_exporter 93.7 0.048 1E-06 52.8 2.8 68 533-652 123-190 (201)
77 PRK13638 cbiO cobalt transport 93.7 0.056 1.2E-06 54.7 3.3 76 532-659 133-209 (271)
78 cd03214 ABC_Iron-Siderophores_ 93.7 0.063 1.4E-06 51.1 3.5 77 531-659 93-171 (180)
79 cd03262 ABC_HisP_GlnQ_permease 93.7 0.058 1.3E-06 51.9 3.3 74 533-658 133-207 (213)
80 cd03257 ABC_NikE_OppD_transpor 93.6 0.056 1.2E-06 52.3 3.2 75 533-659 143-219 (228)
81 cd03265 ABC_DrrA DrrA is the A 93.6 0.056 1.2E-06 52.6 3.1 73 533-657 129-203 (220)
82 PRK13649 cbiO cobalt transport 93.6 0.061 1.3E-06 54.6 3.5 77 531-659 141-218 (280)
83 TIGR00972 3a0107s01c2 phosphat 93.6 0.065 1.4E-06 53.2 3.5 76 531-659 140-216 (247)
84 PRK09580 sufC cysteine desulfu 93.6 0.067 1.5E-06 52.7 3.6 71 535-657 145-217 (248)
85 COG1122 CbiO ABC-type cobalt t 93.6 0.028 6E-07 57.9 1.0 77 529-657 132-210 (235)
86 TIGR01166 cbiO cobalt transpor 93.6 0.048 1E-06 51.9 2.5 63 533-647 125-187 (190)
87 cd03219 ABC_Mj1267_LivG_branch 93.6 0.061 1.3E-06 52.6 3.3 76 532-659 140-216 (236)
88 cd03264 ABC_drug_resistance_li 93.5 0.061 1.3E-06 51.9 3.2 75 532-659 127-202 (211)
89 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.5 0.069 1.5E-06 52.4 3.6 75 532-659 136-210 (238)
90 cd03224 ABC_TM1139_LivF_branch 93.5 0.071 1.5E-06 51.6 3.6 76 532-659 129-205 (222)
91 TIGR03864 PQQ_ABC_ATP ABC tran 93.5 0.056 1.2E-06 53.3 2.9 76 532-659 129-205 (236)
92 PRK10584 putative ABC transpor 93.4 0.056 1.2E-06 52.8 2.8 73 534-658 145-218 (228)
93 cd03237 ABC_RNaseL_inhibitor_d 93.4 0.062 1.3E-06 54.5 3.1 76 532-659 112-189 (246)
94 PRK10908 cell division protein 93.4 0.072 1.6E-06 52.0 3.4 75 533-659 135-210 (222)
95 cd03293 ABC_NrtD_SsuB_transpor 93.4 0.074 1.6E-06 51.8 3.5 73 534-658 130-204 (220)
96 cd03267 ABC_NatA_like Similar 93.4 0.062 1.3E-06 53.4 3.0 75 533-659 151-227 (236)
97 cd03248 ABCC_TAP TAP, the Tran 93.4 0.077 1.7E-06 51.7 3.6 74 533-659 148-221 (226)
98 cd03238 ABC_UvrA The excision 93.4 0.09 2E-06 51.6 4.1 78 530-659 82-161 (176)
99 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.076 1.7E-06 49.2 3.4 72 536-659 81-153 (157)
100 PRK10790 putative multidrug tr 93.3 0.068 1.5E-06 59.5 3.6 72 535-659 476-547 (592)
101 TIGR01189 ccmA heme ABC export 93.3 0.056 1.2E-06 52.0 2.5 64 533-648 125-188 (198)
102 TIGR03375 type_I_sec_LssB type 93.3 0.079 1.7E-06 60.3 4.1 73 534-659 600-672 (694)
103 cd03244 ABCC_MRP_domain2 Domai 93.2 0.1 2.2E-06 50.6 4.3 75 532-659 136-210 (221)
104 cd03234 ABCG_White The White s 93.2 0.1 2.2E-06 51.1 4.3 74 532-657 140-215 (226)
105 TIGR02315 ABC_phnC phosphonate 93.2 0.075 1.6E-06 52.2 3.3 76 532-659 142-219 (243)
106 PRK14272 phosphate ABC transpo 93.2 0.098 2.1E-06 51.8 4.1 75 532-659 145-220 (252)
107 TIGR02323 CP_lyasePhnK phospho 93.2 0.066 1.4E-06 53.2 2.9 76 532-659 145-222 (253)
108 PRK13631 cbiO cobalt transport 93.2 0.066 1.4E-06 56.6 3.1 76 532-659 173-249 (320)
109 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.2 0.074 1.6E-06 52.6 3.2 76 532-659 139-215 (224)
110 PRK13637 cbiO cobalt transport 93.1 0.069 1.5E-06 55.0 3.1 76 532-659 141-218 (287)
111 TIGR01978 sufC FeS assembly AT 93.1 0.086 1.9E-06 51.7 3.5 73 535-659 144-218 (243)
112 PRK11176 lipid transporter ATP 93.1 0.081 1.8E-06 58.6 3.8 72 535-659 480-551 (582)
113 PRK10789 putative multidrug tr 93.1 0.078 1.7E-06 59.3 3.6 73 534-659 450-522 (569)
114 PRK14247 phosphate ABC transpo 93.1 0.098 2.1E-06 51.9 3.9 75 532-659 143-218 (250)
115 cd03296 ABC_CysA_sulfate_impor 93.1 0.066 1.4E-06 52.9 2.7 75 533-659 134-210 (239)
116 cd03254 ABCC_Glucan_exporter_l 93.1 0.094 2E-06 51.1 3.7 75 532-659 136-210 (229)
117 PRK10938 putative molybdenum t 93.0 0.084 1.8E-06 57.6 3.7 77 531-659 131-208 (490)
118 cd03253 ABCC_ATM1_transporter 93.0 0.09 1.9E-06 51.5 3.5 74 533-659 135-208 (236)
119 PRK13657 cyclic beta-1,2-gluca 93.0 0.086 1.9E-06 58.8 3.8 72 535-659 471-542 (588)
120 COG4181 Predicted ABC-type tra 93.0 0.091 2E-06 54.6 3.6 81 531-663 142-223 (228)
121 TIGR02633 xylG D-xylose ABC tr 93.0 0.1 2.2E-06 57.1 4.2 77 531-659 399-476 (500)
122 cd03279 ABC_sbcCD SbcCD and ot 92.9 0.12 2.6E-06 50.8 4.2 81 530-659 118-205 (213)
123 PRK15056 manganese/iron transp 92.9 0.1 2.2E-06 53.0 3.9 73 532-656 139-212 (272)
124 PRK13541 cytochrome c biogenes 92.9 0.071 1.5E-06 51.3 2.6 67 532-650 120-186 (195)
125 TIGR00611 recf recF protein. A 92.9 1.3 2.9E-05 48.1 12.4 162 392-585 144-315 (365)
126 cd03245 ABCC_bacteriocin_expor 92.9 0.11 2.3E-06 50.5 3.8 74 532-658 137-210 (220)
127 TIGR03797 NHPM_micro_ABC2 NHPM 92.9 0.086 1.9E-06 60.0 3.6 72 533-659 586-657 (686)
128 PRK13636 cbiO cobalt transport 92.9 0.089 1.9E-06 54.0 3.4 77 531-659 137-215 (283)
129 cd03251 ABCC_MsbA MsbA is an e 92.9 0.1 2.2E-06 51.1 3.6 74 533-659 136-209 (234)
130 PRK13645 cbiO cobalt transport 92.8 0.085 1.8E-06 54.0 3.2 76 532-659 147-224 (289)
131 cd03263 ABC_subfamily_A The AB 92.8 0.095 2.1E-06 50.8 3.3 74 533-659 131-205 (220)
132 cd03298 ABC_ThiQ_thiamine_tran 92.8 0.1 2.2E-06 50.4 3.5 74 534-659 127-202 (211)
133 TIGR02204 MsbA_rel ABC transpo 92.8 0.1 2.2E-06 57.7 3.9 73 534-659 475-547 (576)
134 TIGR02770 nickel_nikD nickel i 92.7 0.084 1.8E-06 52.0 2.9 76 532-659 122-199 (230)
135 PRK14242 phosphate transporter 92.7 0.1 2.3E-06 51.8 3.6 75 532-659 146-221 (253)
136 PRK11231 fecE iron-dicitrate t 92.7 0.12 2.6E-06 51.7 3.9 76 532-659 135-211 (255)
137 PRK13633 cobalt transporter AT 92.7 0.079 1.7E-06 54.2 2.7 75 533-659 142-217 (280)
138 PRK14249 phosphate ABC transpo 92.7 0.12 2.6E-06 51.5 3.9 76 531-659 143-219 (251)
139 PRK13644 cbiO cobalt transport 92.7 0.091 2E-06 53.7 3.2 75 533-659 134-208 (274)
140 PRK14250 phosphate ABC transpo 92.7 0.097 2.1E-06 52.0 3.3 76 532-659 128-205 (241)
141 PRK14274 phosphate ABC transpo 92.7 0.12 2.7E-06 51.7 4.0 76 531-659 151-227 (259)
142 PRK14241 phosphate transporter 92.6 0.12 2.7E-06 51.7 3.9 76 531-659 144-220 (258)
143 cd03215 ABC_Carb_Monos_II This 92.6 0.1 2.3E-06 49.8 3.2 70 536-657 105-175 (182)
144 PRK14245 phosphate ABC transpo 92.6 0.12 2.7E-06 51.3 3.8 75 532-659 143-218 (250)
145 TIGR03740 galliderm_ABC gallid 92.6 0.1 2.3E-06 50.9 3.3 76 532-659 121-197 (223)
146 PRK10771 thiQ thiamine transpo 92.5 0.1 2.2E-06 51.3 3.2 74 534-659 128-203 (232)
147 cd03295 ABC_OpuCA_Osmoprotecti 92.5 0.1 2.2E-06 51.7 3.1 76 532-659 132-209 (242)
148 TIGR03873 F420-0_ABC_ATP propo 92.5 0.12 2.6E-06 51.7 3.7 75 533-659 135-210 (256)
149 PRK14079 recF recombination pr 92.5 2.2 4.7E-05 46.0 13.2 159 392-585 140-303 (349)
150 PF13558 SbcCD_C: Putative exo 92.4 0.15 3.4E-06 45.1 3.8 26 530-555 27-53 (90)
151 PRK10982 galactose/methyl gala 92.4 0.13 2.8E-06 56.3 4.0 77 531-659 387-464 (491)
152 PRK13632 cbiO cobalt transport 92.3 0.099 2.1E-06 53.1 2.9 73 533-657 140-213 (271)
153 cd03229 ABC_Class3 This class 92.3 0.11 2.3E-06 49.6 2.9 70 536-657 101-172 (178)
154 PRK14267 phosphate ABC transpo 92.3 0.12 2.6E-06 51.3 3.4 76 531-659 145-221 (253)
155 TIGR03269 met_CoM_red_A2 methy 92.3 0.12 2.5E-06 57.0 3.6 76 532-659 165-242 (520)
156 TIGR01184 ntrCD nitrate transp 92.3 0.12 2.7E-06 51.1 3.4 75 533-659 112-188 (230)
157 cd03230 ABC_DR_subfamily_A Thi 92.3 0.13 2.8E-06 48.8 3.4 71 536-658 96-167 (173)
158 PRK11831 putative ABC transpor 92.2 0.12 2.5E-06 52.6 3.2 74 533-658 141-216 (269)
159 PRK10575 iron-hydroxamate tran 92.2 0.13 2.8E-06 52.0 3.5 75 533-659 145-221 (265)
160 PRK13539 cytochrome c biogenes 92.2 0.1 2.2E-06 50.8 2.7 73 534-659 126-198 (207)
161 PRK13548 hmuV hemin importer A 92.2 0.15 3.3E-06 51.5 3.9 78 533-659 132-214 (258)
162 PRK14239 phosphate transporter 92.2 0.13 2.9E-06 50.9 3.5 75 532-659 145-220 (252)
163 PRK14235 phosphate transporter 92.2 0.15 3.2E-06 51.7 3.9 76 531-659 159-235 (267)
164 PRK14273 phosphate ABC transpo 92.1 0.15 3.2E-06 50.9 3.8 75 532-659 147-222 (254)
165 PRK13642 cbiO cobalt transport 92.1 0.11 2.3E-06 53.1 2.8 75 533-659 138-213 (277)
166 PRK13647 cbiO cobalt transport 92.0 0.14 2.9E-06 52.4 3.4 75 533-659 136-211 (274)
167 PRK13651 cobalt transporter AT 92.0 0.14 3.1E-06 53.7 3.6 77 531-659 161-238 (305)
168 cd03297 ABC_ModC_molybdenum_tr 92.0 0.13 2.9E-06 49.8 3.2 75 532-658 128-204 (214)
169 PRK13639 cbiO cobalt transport 91.9 0.13 2.7E-06 52.6 3.1 75 533-659 135-210 (275)
170 PRK13650 cbiO cobalt transport 91.9 0.11 2.4E-06 53.2 2.8 74 534-659 139-213 (279)
171 TIGR00968 3a0106s01 sulfate AB 91.9 0.14 3E-06 50.9 3.3 75 534-660 129-205 (237)
172 TIGR01187 potA spermidine/putr 91.9 0.13 2.7E-06 54.3 3.2 75 533-659 98-174 (325)
173 TIGR02142 modC_ABC molybdenum 91.9 0.13 2.8E-06 54.8 3.3 75 533-659 129-205 (354)
174 cd03277 ABC_SMC5_euk Eukaryoti 91.9 0.11 2.5E-06 51.8 2.7 34 530-568 121-154 (213)
175 PRK15134 microcin C ABC transp 91.9 0.12 2.6E-06 57.2 3.1 77 531-659 152-230 (529)
176 CHL00131 ycf16 sulfate ABC tra 91.9 0.15 3.3E-06 50.5 3.5 73 535-659 151-225 (252)
177 cd03232 ABC_PDR_domain2 The pl 91.9 0.12 2.7E-06 49.8 2.8 72 535-658 108-181 (192)
178 PRK10895 lipopolysaccharide AB 91.8 0.15 3.2E-06 50.4 3.4 76 532-659 134-210 (241)
179 PRK13549 xylose transporter AT 91.8 0.13 2.8E-06 56.7 3.2 76 532-659 140-216 (506)
180 PRK11160 cysteine/glutathione 91.8 0.15 3.2E-06 57.2 3.7 73 534-659 474-546 (574)
181 PRK13648 cbiO cobalt transport 91.8 0.12 2.7E-06 52.2 2.8 75 533-659 140-215 (269)
182 PRK11308 dppF dipeptide transp 91.7 0.14 3E-06 54.4 3.2 75 533-659 152-228 (327)
183 PRK11248 tauB taurine transpor 91.7 0.13 2.9E-06 52.0 2.9 75 533-659 126-202 (255)
184 TIGR01192 chvA glucan exporter 91.7 0.15 3.2E-06 57.5 3.5 73 534-659 470-542 (585)
185 PRK11153 metN DL-methionine tr 91.7 0.12 2.7E-06 54.9 2.8 76 532-659 137-214 (343)
186 PRK13547 hmuV hemin importer A 91.7 0.16 3.6E-06 52.2 3.6 79 532-659 142-228 (272)
187 TIGR01288 nodI ATP-binding ABC 91.6 0.14 3.1E-06 53.0 3.2 76 532-659 132-208 (303)
188 PRK10247 putative ABC transpor 91.6 0.16 3.4E-06 50.1 3.2 77 532-660 134-211 (225)
189 PRK13635 cbiO cobalt transport 91.6 0.13 2.8E-06 52.8 2.8 75 533-659 138-213 (279)
190 TIGR01842 type_I_sec_PrtD type 91.6 0.17 3.7E-06 56.1 3.9 74 534-659 453-526 (544)
191 cd03213 ABCG_EPDR ABCG transpo 91.6 0.16 3.5E-06 49.2 3.3 73 535-659 111-185 (194)
192 TIGR01188 drrA daunorubicin re 91.5 0.15 3.3E-06 52.8 3.2 74 532-657 121-195 (302)
193 PRK14255 phosphate ABC transpo 91.5 0.18 3.9E-06 50.1 3.6 75 532-659 145-220 (252)
194 PRK14259 phosphate ABC transpo 91.5 0.19 4.1E-06 51.2 3.8 77 531-660 150-227 (269)
195 PRK10982 galactose/methyl gala 91.5 0.16 3.5E-06 55.6 3.6 76 532-659 131-207 (491)
196 cd03217 ABC_FeS_Assembly ABC-t 91.5 0.17 3.7E-06 49.2 3.3 74 534-659 103-178 (200)
197 PRK09700 D-allose transporter 91.5 0.21 4.4E-06 55.1 4.3 77 531-659 405-482 (510)
198 PRK14262 phosphate ABC transpo 91.5 0.15 3.3E-06 50.6 3.1 76 531-659 142-218 (250)
199 PRK14240 phosphate transporter 91.5 0.2 4.3E-06 49.8 3.8 75 532-659 143-218 (250)
200 TIGR00630 uvra excinuclease AB 91.4 0.17 3.6E-06 61.3 3.8 78 531-659 483-561 (924)
201 PRK13646 cbiO cobalt transport 91.4 0.17 3.6E-06 52.1 3.3 77 531-659 141-219 (286)
202 PRK15134 microcin C ABC transp 91.4 0.14 3.1E-06 56.6 3.1 77 531-659 421-499 (529)
203 TIGR03005 ectoine_ehuA ectoine 91.4 0.17 3.7E-06 50.4 3.3 74 534-659 145-220 (252)
204 COG1132 MdlB ABC-type multidru 91.4 0.17 3.7E-06 56.3 3.6 81 534-667 464-547 (567)
205 cd03294 ABC_Pro_Gly_Bertaine T 91.4 0.18 3.9E-06 51.3 3.5 75 533-659 158-234 (269)
206 TIGR01194 cyc_pep_trnsptr cycl 91.4 0.17 3.7E-06 56.6 3.6 75 534-659 469-543 (555)
207 TIGR02769 nickel_nikE nickel i 91.3 0.15 3.3E-06 51.5 2.9 76 532-659 147-224 (265)
208 COG2274 SunT ABC-type bacterio 91.3 0.14 3.1E-06 60.2 3.1 72 533-657 607-678 (709)
209 cd03247 ABCC_cytochrome_bd The 91.3 0.19 4.2E-06 47.7 3.4 73 533-658 96-168 (178)
210 PRK09700 D-allose transporter 91.2 0.17 3.6E-06 55.7 3.4 77 531-659 141-218 (510)
211 cd03223 ABCD_peroxisomal_ALDP 91.2 0.19 4.1E-06 47.7 3.3 70 532-656 88-157 (166)
212 PRK11247 ssuB aliphatic sulfon 91.2 0.16 3.5E-06 51.9 3.0 75 533-659 131-207 (257)
213 PRK14270 phosphate ABC transpo 91.2 0.21 4.6E-06 49.7 3.7 75 532-659 144-219 (251)
214 cd03299 ABC_ModC_like Archeal 91.2 0.19 4.1E-06 49.9 3.3 74 534-659 128-203 (235)
215 PRK11300 livG leucine/isoleuci 91.2 0.18 4E-06 50.0 3.3 76 532-659 150-227 (255)
216 TIGR01277 thiQ thiamine ABC tr 91.2 0.2 4.3E-06 48.8 3.4 74 534-659 127-202 (213)
217 TIGR03410 urea_trans_UrtE urea 91.2 0.18 3.8E-06 49.4 3.1 74 532-657 128-203 (230)
218 PRK13543 cytochrome c biogenes 91.1 0.18 3.8E-06 49.4 3.1 73 533-657 135-208 (214)
219 TIGR03796 NHPM_micro_ABC1 NHPM 91.1 0.26 5.6E-06 56.3 4.8 71 534-659 614-684 (710)
220 PRK10253 iron-enterobactin tra 91.1 0.18 3.9E-06 51.0 3.2 76 532-659 140-217 (265)
221 PRK13549 xylose transporter AT 91.1 0.21 4.6E-06 55.0 4.0 76 531-658 401-477 (506)
222 PRK11701 phnK phosphonate C-P 91.1 0.19 4.2E-06 50.4 3.3 77 531-659 147-225 (258)
223 PRK11288 araG L-arabinose tran 91.1 0.23 5E-06 54.6 4.2 77 531-659 136-213 (501)
224 cd03301 ABC_MalK_N The N-termi 91.1 0.17 3.7E-06 48.8 2.9 74 533-658 128-203 (213)
225 PRK14256 phosphate ABC transpo 91.0 0.25 5.4E-06 49.3 4.1 75 532-659 145-220 (252)
226 PRK14268 phosphate ABC transpo 91.0 0.2 4.3E-06 50.4 3.3 75 532-659 151-226 (258)
227 PRK13634 cbiO cobalt transport 90.9 0.17 3.7E-06 52.2 2.9 77 531-659 141-219 (290)
228 PRK13641 cbiO cobalt transport 90.9 0.23 4.9E-06 51.2 3.7 76 532-659 142-218 (287)
229 PRK13640 cbiO cobalt transport 90.9 0.17 3.7E-06 51.9 2.8 74 534-659 142-216 (282)
230 cd03290 ABCC_SUR1_N The SUR do 90.8 0.23 5E-06 48.4 3.5 73 532-656 137-211 (218)
231 PRK15439 autoinducer 2 ABC tra 90.8 0.19 4.2E-06 55.6 3.3 77 531-659 136-213 (510)
232 TIGR01193 bacteriocin_ABC ABC- 90.8 0.2 4.4E-06 57.3 3.6 73 533-659 609-681 (708)
233 TIGR02633 xylG D-xylose ABC tr 90.8 0.19 4.2E-06 55.0 3.3 76 532-659 138-214 (500)
234 TIGR00630 uvra excinuclease AB 90.8 0.21 4.5E-06 60.6 3.8 81 530-659 823-903 (924)
235 PRK14265 phosphate ABC transpo 90.7 0.25 5.5E-06 50.5 3.9 76 531-659 157-233 (274)
236 PRK09544 znuC high-affinity zi 90.7 0.19 4E-06 51.1 2.9 75 532-658 117-193 (251)
237 cd03246 ABCC_Protease_Secretio 90.6 0.23 4.9E-06 47.2 3.2 70 536-657 97-166 (173)
238 PRK15439 autoinducer 2 ABC tra 90.6 0.29 6.4E-06 54.2 4.5 77 531-659 399-476 (510)
239 PRK10419 nikE nickel transport 90.6 0.19 4.1E-06 51.1 2.8 76 532-659 148-225 (268)
240 PRK14269 phosphate ABC transpo 90.6 0.28 6.1E-06 48.9 3.9 75 532-659 139-214 (246)
241 PRK14244 phosphate ABC transpo 90.5 0.25 5.4E-06 49.3 3.5 75 532-659 146-221 (251)
242 TIGR03771 anch_rpt_ABC anchore 90.5 0.25 5.5E-06 48.7 3.6 74 532-657 110-184 (223)
243 PRK14251 phosphate ABC transpo 90.5 0.25 5.3E-06 49.2 3.5 74 532-658 144-218 (251)
244 PRK13409 putative ATPase RIL; 90.5 0.2 4.3E-06 57.4 3.1 77 531-659 449-527 (590)
245 PRK15079 oligopeptide ABC tran 90.5 0.19 4.2E-06 53.4 2.9 74 533-658 159-234 (331)
246 PRK14243 phosphate transporter 90.4 0.29 6.2E-06 49.7 3.9 75 532-659 148-223 (264)
247 PRK10762 D-ribose transporter 90.4 0.27 5.8E-06 54.2 4.0 76 531-658 391-467 (501)
248 TIGR01846 type_I_sec_HlyB type 90.4 0.25 5.5E-06 56.5 3.9 74 533-659 591-664 (694)
249 PRK14271 phosphate ABC transpo 90.4 0.26 5.7E-06 50.6 3.6 75 532-659 160-235 (276)
250 PRK11288 araG L-arabinose tran 90.3 0.29 6.3E-06 53.9 4.2 78 530-659 391-469 (501)
251 PRK10418 nikD nickel transport 90.3 0.22 4.8E-06 50.0 3.0 76 532-659 137-214 (254)
252 PRK10744 pstB phosphate transp 90.2 0.3 6.4E-06 49.2 3.8 75 532-659 153-228 (260)
253 PRK09984 phosphonate/organopho 90.2 0.28 6E-06 49.4 3.6 76 532-659 149-226 (262)
254 PRK14266 phosphate ABC transpo 90.2 0.34 7.5E-06 48.1 4.1 71 532-655 143-213 (250)
255 PRK03695 vitamin B12-transport 90.1 0.27 6E-06 49.3 3.5 79 532-659 123-206 (248)
256 TIGR03269 met_CoM_red_A2 methy 90.1 0.19 4.1E-06 55.5 2.5 77 531-659 423-501 (520)
257 PRK14254 phosphate ABC transpo 90.1 0.29 6.3E-06 50.6 3.8 72 532-656 177-249 (285)
258 cd03216 ABC_Carb_Monos_I This 90.0 0.26 5.7E-06 46.7 3.1 73 535-659 82-155 (163)
259 PRK11000 maltose/maltodextrin 89.9 0.22 4.7E-06 53.7 2.7 75 533-659 131-207 (369)
260 PF13304 AAA_21: AAA domain; P 89.9 0.33 7.1E-06 43.4 3.4 46 523-585 224-270 (303)
261 PRK10762 D-ribose transporter 89.9 0.26 5.5E-06 54.3 3.3 77 531-659 137-214 (501)
262 TIGR00958 3a01208 Conjugate Tr 89.9 0.29 6.2E-06 56.6 3.8 71 534-659 616-686 (711)
263 PRK10522 multidrug transporter 89.8 0.22 4.8E-06 55.4 2.8 74 534-659 448-522 (547)
264 PRK14253 phosphate ABC transpo 89.8 0.34 7.3E-06 48.2 3.8 75 532-659 142-217 (249)
265 PRK11144 modC molybdate transp 89.8 0.28 6.2E-06 52.4 3.5 75 533-659 126-202 (352)
266 PRK14258 phosphate ABC transpo 89.8 0.3 6.5E-06 49.3 3.4 75 532-658 147-223 (261)
267 TIGR02857 CydD thiol reductant 89.7 0.27 5.9E-06 54.0 3.4 71 534-657 457-527 (529)
268 cd03300 ABC_PotA_N PotA is an 89.6 0.26 5.7E-06 48.7 2.9 74 534-659 129-204 (232)
269 COG1126 GlnQ ABC-type polar am 89.5 0.21 4.5E-06 52.9 2.2 69 527-647 128-196 (240)
270 PRK13545 tagH teichoic acids e 89.5 0.29 6.3E-06 56.7 3.5 76 532-659 140-216 (549)
271 PRK10938 putative molybdenum t 89.4 0.24 5.2E-06 54.2 2.6 70 531-652 397-467 (490)
272 PRK13409 putative ATPase RIL; 89.4 0.27 5.9E-06 56.3 3.2 74 530-656 207-281 (590)
273 cd03233 ABC_PDR_domain1 The pl 89.2 0.32 6.9E-06 47.5 3.0 75 531-657 114-191 (202)
274 cd03222 ABC_RNaseL_inhibitor T 89.2 0.37 8.1E-06 47.5 3.5 70 536-657 72-143 (177)
275 PRK11650 ugpC glycerol-3-phosp 89.1 0.24 5.3E-06 53.3 2.4 75 533-659 132-208 (356)
276 PRK13546 teichoic acids export 89.1 0.35 7.6E-06 49.8 3.4 75 532-658 140-215 (264)
277 PRK14238 phosphate transporter 89.1 0.4 8.7E-06 48.9 3.8 75 532-659 164-239 (271)
278 PRK11432 fbpC ferric transport 89.0 0.32 6.9E-06 52.4 3.1 75 533-659 134-210 (351)
279 PRK14248 phosphate ABC transpo 89.0 0.44 9.5E-06 48.2 3.9 76 531-659 160-236 (268)
280 PRK11022 dppD dipeptide transp 88.9 0.36 7.9E-06 51.1 3.4 74 532-657 150-225 (326)
281 COG4694 Uncharacterized protei 88.8 5.9 0.00013 47.0 13.0 24 534-557 528-551 (758)
282 COG4717 Uncharacterized conser 88.8 9.3 0.0002 47.1 15.0 96 520-661 886-981 (984)
283 PRK10851 sulfate/thiosulfate t 88.8 0.33 7.1E-06 52.3 3.1 76 532-659 133-210 (353)
284 PRK14260 phosphate ABC transpo 88.7 0.45 9.8E-06 47.9 3.8 75 532-659 147-222 (259)
285 PRK14236 phosphate transporter 88.7 0.4 8.7E-06 48.8 3.5 75 532-659 165-240 (272)
286 PRK10261 glutathione transport 88.7 0.33 7.1E-06 55.5 3.1 77 531-659 164-242 (623)
287 PRK09452 potA putrescine/sperm 88.6 0.33 7.2E-06 52.9 3.0 75 533-659 142-218 (375)
288 PTZ00265 multidrug resistance 88.5 0.37 8.1E-06 60.6 3.7 75 534-660 1357-1432(1466)
289 PRK14261 phosphate ABC transpo 88.5 0.37 7.9E-06 48.1 3.0 75 532-659 146-221 (253)
290 TIGR03411 urea_trans_UrtD urea 88.4 0.43 9.4E-06 47.1 3.4 75 532-659 140-215 (242)
291 PRK14252 phosphate ABC transpo 88.3 0.39 8.6E-06 48.5 3.1 73 533-658 159-232 (265)
292 PRK10261 glutathione transport 88.3 0.36 7.8E-06 55.2 3.1 75 531-657 459-535 (623)
293 TIGR03258 PhnT 2-aminoethylpho 88.3 0.38 8.2E-06 52.2 3.1 28 532-568 134-161 (362)
294 PRK13652 cbiO cobalt transport 88.3 0.47 1E-05 48.6 3.6 75 533-659 135-211 (277)
295 cd03228 ABCC_MRP_Like The MRP 88.2 0.43 9.3E-06 45.2 3.1 71 536-659 97-167 (171)
296 cd03250 ABCC_MRP_domain1 Domai 88.2 0.53 1.1E-05 45.5 3.7 28 532-568 124-151 (204)
297 TIGR03265 PhnT2 putative 2-ami 88.0 0.39 8.4E-06 51.7 3.0 74 532-657 131-206 (353)
298 PRK00349 uvrA excinuclease ABC 88.0 0.43 9.4E-06 58.0 3.7 78 531-659 485-563 (943)
299 PRK14264 phosphate ABC transpo 87.8 0.5 1.1E-05 49.3 3.6 71 533-656 198-269 (305)
300 TIGR03719 ABC_ABC_ChvD ATP-bin 87.7 0.43 9.2E-06 53.4 3.2 74 530-658 438-512 (552)
301 TIGR01186 proV glycine betaine 87.6 0.41 9E-06 52.1 3.0 74 532-657 126-201 (363)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 87.6 0.52 1.1E-05 52.8 3.8 75 531-660 157-232 (552)
303 PRK10636 putative ABC transpor 87.5 0.51 1.1E-05 54.3 3.7 75 530-659 425-500 (638)
304 PRK11147 ABC transporter ATPas 87.4 0.52 1.1E-05 54.0 3.7 73 530-657 435-508 (635)
305 PRK10070 glycine betaine trans 87.4 0.43 9.4E-06 52.6 3.0 75 533-659 162-238 (400)
306 cd03288 ABCC_SUR2 The SUR doma 87.4 0.55 1.2E-05 47.4 3.5 74 533-659 154-227 (257)
307 PTZ00265 multidrug resistance 87.3 0.49 1.1E-05 59.6 3.7 81 533-665 577-658 (1466)
308 PRK09473 oppD oligopeptide tra 87.2 0.49 1.1E-05 50.4 3.2 74 533-658 159-234 (330)
309 PRK15064 ABC transporter ATP-b 87.2 0.57 1.2E-05 52.0 3.8 75 530-659 433-508 (530)
310 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.0 0.76 1.6E-05 43.0 4.0 68 535-657 70-138 (144)
311 TIGR02314 ABC_MetN D-methionin 87.0 0.5 1.1E-05 51.0 3.1 75 532-658 137-213 (343)
312 PLN03130 ABC transporter C fam 86.9 0.64 1.4E-05 59.1 4.4 75 533-659 738-812 (1622)
313 PRK14237 phosphate transporter 86.4 0.75 1.6E-05 46.8 3.8 76 531-659 159-235 (267)
314 PRK00349 uvrA excinuclease ABC 86.2 0.56 1.2E-05 57.1 3.3 80 531-659 826-905 (943)
315 COG1121 ZnuC ABC-type Mn/Zn tr 85.8 0.6 1.3E-05 49.6 2.9 78 529-658 133-211 (254)
316 PRK11819 putative ABC transpor 85.5 0.76 1.6E-05 51.7 3.7 74 531-659 159-233 (556)
317 PRK14263 phosphate ABC transpo 85.3 0.92 2E-05 46.2 3.9 75 532-659 146-221 (261)
318 PRK15093 antimicrobial peptide 85.3 0.69 1.5E-05 49.0 3.1 73 533-657 156-230 (330)
319 TIGR00957 MRP_assoc_pro multi 85.2 0.86 1.9E-05 57.5 4.3 82 534-668 1420-1504(1522)
320 PRK13536 nodulation factor exp 84.9 0.71 1.5E-05 49.6 3.0 77 531-659 168-245 (340)
321 PF00005 ABC_tran: ABC transpo 84.9 0.78 1.7E-05 40.9 2.8 28 532-568 105-132 (137)
322 TIGR02982 heterocyst_DevA ABC 84.7 0.66 1.4E-05 45.4 2.5 72 534-657 140-212 (220)
323 PRK13537 nodulation ABC transp 84.7 0.77 1.7E-05 48.2 3.0 76 532-659 135-211 (306)
324 TIGR00957 MRP_assoc_pro multi 84.7 0.7 1.5E-05 58.2 3.2 78 532-659 757-834 (1522)
325 PF13175 AAA_15: AAA ATPase do 84.5 5.8 0.00013 41.2 9.2 79 527-648 333-413 (415)
326 PLN03211 ABC transporter G-25; 84.5 0.7 1.5E-05 53.8 2.9 75 533-659 204-280 (659)
327 PRK14275 phosphate ABC transpo 84.5 0.9 1.9E-05 47.0 3.4 76 531-659 178-254 (286)
328 PLN03232 ABC transporter C fam 83.9 1.2 2.6E-05 56.2 4.8 74 534-659 739-812 (1495)
329 PRK15177 Vi polysaccharide exp 83.9 1 2.2E-05 44.6 3.4 29 531-568 100-128 (213)
330 PRK11819 putative ABC transpor 83.7 1 2.2E-05 50.7 3.6 73 530-657 440-513 (556)
331 TIGR02868 CydC thiol reductant 82.7 0.87 1.9E-05 50.2 2.7 32 535-585 470-501 (529)
332 PTZ00243 ABC transporter; Prov 82.7 0.99 2.2E-05 57.2 3.4 83 534-668 1444-1529(1560)
333 KOG2391|consensus 82.1 41 0.00088 38.2 14.8 53 405-457 243-295 (365)
334 PRK09536 btuD corrinoid ABC tr 82.0 1.1 2.5E-05 49.5 3.2 76 532-659 136-212 (402)
335 PRK11607 potG putrescine trans 81.9 1.1 2.3E-05 49.0 3.0 28 532-568 146-173 (377)
336 cd03289 ABCC_CFTR2 The CFTR su 81.3 1.5 3.2E-05 45.8 3.6 73 534-659 137-209 (275)
337 PF10046 BLOC1_2: Biogenesis o 81.3 37 0.0008 31.3 12.0 76 380-456 15-92 (99)
338 TIGR00954 3a01203 Peroxysomal 81.2 1.2 2.7E-05 51.4 3.3 71 534-659 581-651 (659)
339 TIGR03415 ABC_choXWV_ATP choli 81.1 1.1 2.5E-05 49.3 2.8 75 533-659 162-238 (382)
340 PRK15064 ABC transporter ATP-b 81.0 2.1 4.6E-05 47.6 4.9 29 531-568 151-179 (530)
341 PRK10535 macrolide transporter 81.0 1.3 2.8E-05 51.1 3.3 74 534-659 143-216 (648)
342 PLN03073 ABC transporter F fam 80.7 2 4.4E-05 50.7 4.8 30 530-568 622-651 (718)
343 COG1135 AbcC ABC-type metal io 80.7 0.83 1.8E-05 50.5 1.6 28 527-557 133-160 (339)
344 TIGR03522 GldA_ABC_ATP gliding 80.5 1.5 3.3E-05 45.7 3.3 75 532-659 130-205 (301)
345 PRK11147 ABC transporter ATPas 80.5 1.5 3.2E-05 50.4 3.6 29 531-568 152-180 (635)
346 COG1120 FepC ABC-type cobalami 80.3 1.1 2.5E-05 47.5 2.4 30 530-568 133-162 (258)
347 PRK00635 excinuclease ABC subu 79.7 1.3 2.8E-05 57.4 3.0 78 531-659 472-550 (1809)
348 TIGR01271 CFTR_protein cystic 79.6 1.7 3.7E-05 54.9 3.9 120 534-722 1352-1474(1490)
349 PLN03232 ABC transporter C fam 79.3 1.8 3.9E-05 54.7 4.0 82 534-668 1370-1454(1495)
350 PF08580 KAR9: Yeast cortical 79.3 2.6 5.5E-05 50.1 5.0 111 340-461 199-334 (683)
351 COG3840 ThiQ ABC-type thiamine 79.0 1.3 2.8E-05 46.7 2.3 78 527-656 121-199 (231)
352 PF09403 FadA: Adhesion protei 79.0 24 0.00052 34.6 10.6 77 384-461 25-106 (126)
353 COG4988 CydD ABC-type transpor 78.8 1.8 4E-05 50.5 3.6 82 534-668 455-539 (559)
354 PRK10636 putative ABC transpor 77.9 2 4.3E-05 49.7 3.5 29 531-568 145-173 (638)
355 PF06005 DUF904: Protein of un 77.6 53 0.0012 29.5 11.6 48 391-438 8-55 (72)
356 PF01025 GrpE: GrpE; InterPro 77.5 42 0.00091 32.2 11.7 82 378-460 17-108 (165)
357 PRK11637 AmiB activator; Provi 77.1 31 0.00067 38.2 12.1 62 397-458 71-135 (428)
358 PRK14156 heat shock protein Gr 76.7 35 0.00076 35.0 11.5 81 379-460 34-121 (177)
359 PRK00635 excinuclease ABC subu 76.7 2.1 4.5E-05 55.7 3.5 81 530-659 804-884 (1809)
360 PRK14246 phosphate ABC transpo 76.7 2.8 6.1E-05 42.7 3.8 75 532-659 150-225 (257)
361 PLN03130 ABC transporter C fam 76.2 2.2 4.9E-05 54.5 3.6 82 534-668 1373-1457(1622)
362 cd03291 ABCC_CFTR1 The CFTR su 75.8 2.6 5.6E-05 44.2 3.4 27 533-568 157-183 (282)
363 PRK11637 AmiB activator; Provi 75.7 20 0.00043 39.6 10.3 64 383-447 72-135 (428)
364 PRK14153 heat shock protein Gr 75.0 31 0.00068 35.8 10.7 81 379-460 40-130 (194)
365 COG2884 FtsE Predicted ATPase 74.7 2.9 6.3E-05 44.2 3.4 78 526-655 128-205 (223)
366 TIGR00955 3a01204 The Eye Pigm 74.7 2.2 4.7E-05 49.0 2.7 72 534-657 165-238 (617)
367 TIGR01271 CFTR_protein cystic 74.6 2.6 5.6E-05 53.4 3.6 75 533-659 546-620 (1490)
368 PTZ00243 ABC transporter; Prov 74.3 2.7 6E-05 53.5 3.7 76 532-659 779-854 (1560)
369 PRK14155 heat shock protein Gr 73.9 48 0.001 34.8 11.8 83 377-460 18-113 (208)
370 COG1118 CysA ABC-type sulfate/ 73.9 2.4 5.1E-05 47.2 2.6 24 531-557 133-156 (345)
371 cd07681 F-BAR_PACSIN3 The F-BA 73.8 42 0.00091 36.2 11.6 77 380-460 169-253 (258)
372 COG0488 Uup ATPase components 72.8 2 4.2E-05 49.6 1.8 37 523-568 426-463 (530)
373 PRK14139 heat shock protein Gr 72.5 67 0.0015 33.2 12.3 81 379-460 39-127 (185)
374 PLN03073 ABC transporter F fam 72.4 2.8 6E-05 49.6 3.0 75 530-659 339-414 (718)
375 COG1131 CcmA ABC-type multidru 72.1 3.7 7.9E-05 43.4 3.4 72 530-653 131-203 (293)
376 PRK14143 heat shock protein Gr 71.8 50 0.0011 35.3 11.6 80 380-460 75-165 (238)
377 TIGR00956 3a01205 Pleiotropic 71.8 3.6 7.8E-05 51.9 3.9 74 535-659 901-976 (1394)
378 TIGR00956 3a01205 Pleiotropic 71.5 2.5 5.3E-05 53.3 2.4 76 532-659 206-284 (1394)
379 COG3842 PotA ABC-type spermidi 70.6 2 4.3E-05 47.5 1.2 25 530-557 131-155 (352)
380 PF04111 APG6: Autophagy prote 70.3 53 0.0012 35.8 11.6 52 380-432 44-95 (314)
381 PRK04778 septation ring format 70.1 27 0.00059 40.3 10.0 80 380-461 356-435 (569)
382 COG5293 Predicted ATPase [Gene 70.1 25 0.00055 41.2 9.5 31 397-427 375-405 (591)
383 PRK14163 heat shock protein Gr 69.9 49 0.0011 35.0 10.9 81 379-460 47-130 (214)
384 PRK14151 heat shock protein Gr 69.7 86 0.0019 32.1 12.3 81 379-460 27-118 (176)
385 PF13851 GAS: Growth-arrest sp 69.6 68 0.0015 33.0 11.6 40 402-441 87-126 (201)
386 PRK14154 heat shock protein Gr 68.7 66 0.0014 33.9 11.5 80 380-460 60-150 (208)
387 PRK14147 heat shock protein Gr 68.5 69 0.0015 32.6 11.3 81 379-460 25-113 (172)
388 smart00787 Spc7 Spc7 kinetocho 68.0 9.2 0.0002 41.7 5.5 72 380-452 205-276 (312)
389 COG1116 TauB ABC-type nitrate/ 67.8 3.9 8.5E-05 43.7 2.6 25 530-557 125-149 (248)
390 COG4133 CcmA ABC-type transpor 67.1 4.8 0.0001 42.4 3.0 68 530-649 125-192 (209)
391 PRK00409 recombination and DNA 66.9 71 0.0015 38.8 12.8 28 610-647 715-742 (782)
392 PF09738 DUF2051: Double stran 66.2 75 0.0016 35.1 11.8 77 380-458 78-154 (302)
393 PLN03140 ABC transporter G fam 66.1 4.7 0.0001 51.4 3.2 74 534-659 1018-1093(1470)
394 PRK09039 hypothetical protein; 65.8 80 0.0017 34.8 12.0 65 397-461 140-204 (343)
395 COG0178 UvrA Excinuclease ATPa 65.7 20 0.00044 44.3 8.1 78 532-659 478-555 (935)
396 PF10498 IFT57: Intra-flagella 65.7 62 0.0013 36.3 11.2 61 380-441 253-320 (359)
397 COG4604 CeuD ABC-type enteroch 65.7 1.5 3.3E-05 46.7 -0.9 24 529-552 129-152 (252)
398 COG3839 MalK ABC-type sugar tr 65.7 3.3 7.2E-05 45.7 1.6 22 531-552 129-150 (338)
399 PRK14140 heat shock protein Gr 65.1 97 0.0021 32.3 11.7 81 379-460 44-134 (191)
400 TIGR03185 DNA_S_dndD DNA sulfu 65.1 66 0.0014 37.7 11.8 8 627-634 597-604 (650)
401 PRK14141 heat shock protein Gr 64.7 90 0.0019 32.9 11.5 81 379-460 38-134 (209)
402 PRK14157 heat shock protein Gr 64.2 67 0.0015 34.4 10.6 80 380-460 85-167 (227)
403 PRK14159 heat shock protein Gr 64.0 1.1E+02 0.0024 31.5 11.8 81 379-460 30-120 (176)
404 PF04111 APG6: Autophagy prote 63.9 1E+02 0.0022 33.7 12.2 56 391-447 47-102 (314)
405 PF04156 IncA: IncA protein; 63.8 1.2E+02 0.0027 29.7 11.7 58 399-457 93-150 (191)
406 COG4619 ABC-type uncharacteriz 63.1 6.2 0.00013 41.6 2.9 78 530-661 128-209 (223)
407 cd07651 F-BAR_PombeCdc15_like 62.9 1.2E+02 0.0026 31.1 11.9 75 379-457 150-224 (236)
408 COG3638 ABC-type phosphate/pho 62.7 3.5 7.6E-05 44.4 1.1 25 527-551 139-163 (258)
409 COG1123 ATPase components of v 62.6 4.2 9E-05 47.5 1.8 24 531-557 425-448 (539)
410 PRK14162 heat shock protein Gr 62.5 1.4E+02 0.003 31.2 12.3 80 380-460 47-136 (194)
411 PRK14158 heat shock protein Gr 62.3 1.1E+02 0.0023 32.0 11.5 79 381-460 49-136 (194)
412 KOG0058|consensus 61.9 3.9 8.5E-05 49.1 1.4 35 532-585 601-635 (716)
413 TIGR01257 rim_protein retinal- 61.7 6.2 0.00013 52.5 3.2 30 530-568 1056-1085(2272)
414 COG4026 Uncharacterized protei 61.6 47 0.001 36.2 9.0 12 448-459 195-206 (290)
415 cd07596 BAR_SNX The Bin/Amphip 61.6 62 0.0014 31.1 9.2 29 431-459 179-207 (218)
416 COG1124 DppF ABC-type dipeptid 61.2 4.6 9.9E-05 43.5 1.6 72 530-653 136-208 (252)
417 PRK14161 heat shock protein Gr 61.0 1.6E+02 0.0035 30.3 12.3 80 380-460 27-118 (178)
418 KOG0057|consensus 60.8 9.1 0.0002 45.3 4.0 83 531-666 483-568 (591)
419 KOG0062|consensus 60.7 4.2 9E-05 47.8 1.3 30 530-568 477-506 (582)
420 TIGR01069 mutS2 MutS2 family p 60.7 93 0.002 37.9 12.3 45 406-450 527-571 (771)
421 TIGR01257 rim_protein retinal- 60.6 5.4 0.00012 53.1 2.4 75 531-657 2066-2141(2272)
422 PRK14148 heat shock protein Gr 59.7 1.7E+02 0.0036 30.7 12.3 80 380-460 48-137 (195)
423 COG0444 DppD ABC-type dipeptid 59.5 6.5 0.00014 43.4 2.4 84 533-668 151-239 (316)
424 KOG0979|consensus 58.8 68 0.0015 40.6 10.8 64 397-460 244-313 (1072)
425 PRK14149 heat shock protein Gr 58.8 1.7E+02 0.0038 30.6 12.2 80 380-460 44-133 (191)
426 KOG1962|consensus 58.6 30 0.00065 36.8 6.9 52 380-432 159-210 (216)
427 COG4026 Uncharacterized protei 58.5 98 0.0021 33.9 10.7 33 402-434 129-161 (290)
428 COG1195 RecF Recombinational D 58.1 74 0.0016 36.0 10.2 169 391-585 142-315 (363)
429 TIGR01069 mutS2 MutS2 family p 57.7 1.3E+02 0.0028 36.7 12.8 17 630-646 714-730 (771)
430 KOG0055|consensus 57.5 8.9 0.00019 48.6 3.4 81 535-668 489-572 (1228)
431 cd07680 F-BAR_PACSIN1 The F-BA 57.5 1.4E+02 0.0029 32.3 11.6 77 380-460 169-253 (258)
432 cd03242 ABC_RecF RecF is a rec 57.3 7.7 0.00017 40.0 2.5 38 532-585 180-223 (270)
433 PF04949 Transcrip_act: Transc 57.2 73 0.0016 32.8 9.0 67 379-446 84-157 (159)
434 PF02403 Seryl_tRNA_N: Seryl-t 56.6 1.6E+02 0.0034 26.8 10.3 40 398-437 26-65 (108)
435 PRK09343 prefoldin subunit bet 56.4 35 0.00077 32.5 6.5 15 352-366 43-57 (121)
436 COG0488 Uup ATPase components 56.2 6.8 0.00015 45.3 2.1 25 530-557 148-172 (530)
437 KOG0055|consensus 56.1 5.7 0.00012 50.2 1.5 83 532-667 1123-1208(1228)
438 KOG0063|consensus 55.7 6.1 0.00013 46.0 1.5 37 530-585 451-487 (592)
439 cd07599 BAR_Rvs167p The Bin/Am 55.3 2E+02 0.0043 29.2 11.8 64 398-461 121-195 (216)
440 cd07648 F-BAR_FCHO The F-BAR ( 55.3 1.2E+02 0.0026 31.4 10.6 63 391-456 154-216 (261)
441 COG1123 ATPase components of v 55.1 9.2 0.0002 44.8 2.9 83 532-666 151-238 (539)
442 cd07627 BAR_Vps5p The Bin/Amph 55.1 2E+02 0.0043 29.4 11.9 33 428-460 174-206 (216)
443 PRK14146 heat shock protein Gr 55.1 2E+02 0.0044 30.4 12.2 80 380-460 62-151 (215)
444 PRK14144 heat shock protein Gr 55.0 2E+02 0.0044 30.3 12.1 81 379-460 52-141 (199)
445 cd07679 F-BAR_PACSIN2 The F-BA 54.8 1.5E+02 0.0033 32.3 11.5 78 379-460 168-253 (258)
446 PF00261 Tropomyosin: Tropomyo 54.2 2.7E+02 0.0059 28.9 13.1 64 397-460 165-234 (237)
447 PRK14142 heat shock protein Gr 54.0 1.2E+02 0.0026 32.5 10.4 80 380-460 41-124 (223)
448 cd07674 F-BAR_FCHO1 The F-BAR 53.5 1.5E+02 0.0031 31.3 10.9 60 391-453 154-213 (261)
449 cd07655 F-BAR_PACSIN The F-BAR 53.1 1.2E+02 0.0026 31.9 10.3 71 379-453 168-238 (258)
450 PF09325 Vps5: Vps5 C terminal 53.0 1.5E+02 0.0033 29.5 10.5 34 427-460 193-226 (236)
451 PRK03918 chromosome segregatio 53.0 1.8E+02 0.0039 34.6 12.7 15 446-460 742-756 (880)
452 PF09325 Vps5: Vps5 C terminal 52.9 1.3E+02 0.0027 30.0 9.9 55 407-461 162-216 (236)
453 PRK00591 prfA peptide chain re 52.8 4E+02 0.0086 30.4 14.8 26 435-460 73-98 (359)
454 PLN03140 ABC transporter G fam 52.8 4.3 9.4E-05 51.7 -0.2 76 532-659 333-411 (1470)
455 cd07647 F-BAR_PSTPIP The F-BAR 52.4 1.9E+02 0.004 30.0 11.3 72 379-454 153-224 (239)
456 PF00957 Synaptobrevin: Synapt 52.2 1.7E+02 0.0036 25.9 9.8 58 380-438 4-61 (89)
457 PF00261 Tropomyosin: Tropomyo 51.8 1.5E+02 0.0032 30.9 10.5 52 391-442 180-231 (237)
458 COG1117 PstB ABC-type phosphat 51.6 17 0.00036 39.4 3.8 23 532-557 146-168 (253)
459 PRK14160 heat shock protein Gr 51.4 1.9E+02 0.0041 30.7 11.3 79 381-460 70-155 (211)
460 COG1579 Zn-ribbon protein, pos 51.2 2.2E+02 0.0048 30.8 11.9 37 398-434 107-143 (239)
461 cd07673 F-BAR_FCHO2 The F-BAR 50.8 1.7E+02 0.0036 31.3 10.9 67 386-456 157-223 (269)
462 PF13851 GAS: Growth-arrest sp 50.7 3.1E+02 0.0066 28.4 12.6 80 381-461 50-131 (201)
463 PF07106 TBPIP: Tat binding pr 50.4 1.3E+02 0.0028 29.5 9.4 53 383-436 83-137 (169)
464 PF07889 DUF1664: Protein of u 49.9 2.5E+02 0.0054 27.8 11.1 73 380-460 40-112 (126)
465 PF11932 DUF3450: Protein of u 49.3 1.9E+02 0.0041 30.1 10.9 23 527-554 211-233 (251)
466 PF06160 EzrA: Septation ring 49.0 2.5E+02 0.0053 32.9 12.8 22 440-461 440-461 (560)
467 PF02183 HALZ: Homeobox associ 48.9 62 0.0013 26.9 5.9 36 402-437 6-41 (45)
468 COG0410 LivF ABC-type branched 48.6 15 0.00032 39.4 3.0 27 528-557 129-155 (237)
469 PF15290 Syntaphilin: Golgi-lo 48.3 1.6E+02 0.0034 33.1 10.4 74 381-456 63-154 (305)
470 KOG3859|consensus 48.3 1.2E+02 0.0026 34.4 9.7 27 318-344 305-331 (406)
471 PRK00409 recombination and DNA 47.8 1.9E+02 0.0041 35.4 12.0 17 159-175 150-166 (782)
472 PF07374 DUF1492: Protein of u 47.7 66 0.0014 29.4 6.6 60 401-460 22-81 (100)
473 COG4942 Membrane-bound metallo 47.7 1.7E+02 0.0037 34.0 11.0 65 391-459 63-127 (420)
474 COG4559 ABC-type hemin transpo 47.7 11 0.00025 40.6 2.0 27 530-557 130-156 (259)
475 PF03961 DUF342: Protein of un 47.6 95 0.0021 34.9 9.0 9 240-248 176-184 (451)
476 COG4608 AppF ABC-type oligopep 47.0 13 0.00027 40.4 2.2 66 530-647 104-170 (268)
477 cd07671 F-BAR_PSTPIP1 The F-BA 46.9 2.3E+02 0.005 30.0 11.2 75 379-457 153-227 (242)
478 PRK10884 SH3 domain-containing 46.9 1.9E+02 0.0041 30.3 10.4 22 417-438 134-155 (206)
479 COG4148 ModC ABC-type molybdat 46.7 9 0.0002 42.7 1.1 34 631-666 172-206 (352)
480 COG4598 HisP ABC-type histidin 46.5 12 0.00026 39.9 1.9 24 529-552 146-169 (256)
481 PF05700 BCAS2: Breast carcino 46.4 1.2E+02 0.0025 31.5 8.8 60 380-440 151-214 (221)
482 cd07672 F-BAR_PSTPIP2 The F-BA 46.3 2.5E+02 0.0055 29.7 11.4 66 379-448 154-219 (240)
483 PF11932 DUF3450: Protein of u 45.5 3.8E+02 0.0081 28.0 12.6 40 397-436 52-91 (251)
484 smart00721 BAR BAR domain. 45.0 3.1E+02 0.0067 27.1 11.1 41 420-460 175-215 (239)
485 KOG0056|consensus 44.7 9.4 0.0002 45.3 0.9 73 534-659 673-745 (790)
486 PF01442 Apolipoprotein: Apoli 44.3 2.7E+02 0.0058 25.9 12.7 16 438-453 105-120 (202)
487 PF11172 DUF2959: Protein of u 43.9 3.2E+02 0.0069 29.3 11.5 70 381-451 30-107 (201)
488 PF10146 zf-C4H2: Zinc finger- 43.9 3.7E+02 0.0081 28.7 12.2 48 398-445 32-83 (230)
489 PF09602 PhaP_Bmeg: Polyhydrox 43.8 3.6E+02 0.0078 28.1 11.6 52 410-461 80-131 (165)
490 PRK14145 heat shock protein Gr 43.4 3.2E+02 0.007 28.8 11.4 80 380-460 53-139 (196)
491 smart00502 BBC B-Box C-termina 43.3 2.3E+02 0.005 24.9 11.9 77 381-458 30-126 (127)
492 COG0216 PrfA Protein chain rel 43.2 1.1E+02 0.0025 34.8 8.7 44 435-485 74-117 (363)
493 PF03962 Mnd1: Mnd1 family; I 43.0 1.7E+02 0.0037 29.9 9.3 53 408-460 103-162 (188)
494 PF06156 DUF972: Protein of un 42.8 2.9E+02 0.0063 26.5 10.1 54 382-436 4-57 (107)
495 PRK02224 chromosome segregatio 42.6 2.2E+02 0.0047 34.1 11.4 65 397-461 687-751 (880)
496 PRK10884 SH3 domain-containing 42.4 1.1E+02 0.0025 31.9 8.1 22 406-427 137-158 (206)
497 PF04420 CHD5: CHD5-like prote 42.3 48 0.001 32.9 5.2 42 380-422 41-87 (161)
498 PF03114 BAR: BAR domain; Int 41.9 3.1E+02 0.0068 26.1 11.5 19 437-455 168-186 (229)
499 TIGR02338 gimC_beta prefoldin, 41.8 96 0.0021 28.8 6.8 13 352-364 39-51 (110)
500 PF04912 Dynamitin: Dynamitin 41.7 3.2E+02 0.007 30.3 11.8 75 381-460 300-384 (388)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.5e-42 Score=398.84 Aligned_cols=202 Identities=21% Similarity=0.340 Sum_probs=190.6
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYK 458 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFK 458 (926)
..++.+..++. .|..+|++|+++|+++.++|++|..+++++.++++.|.+.|+++|++++++|+.||+.||++|+.||+
T Consensus 949 ~~i~~le~~i~-~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~ 1027 (1163)
T COG1196 949 REIERLEEEIE-ALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFK 1027 (1163)
T ss_pred HHHHHHHHHHH-hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666 77777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCch
Q psy834 459 VHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSG 538 (926)
Q Consensus 459 eLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSG 538 (926)
.|+ +||+|+|.+ .+++|||++||.|.|+||||+++.|++|||
T Consensus 1028 ~L~-------------------------------------~GG~a~L~l-~~~dd~l~~Giei~a~ppgK~~~~l~~LSG 1069 (1163)
T COG1196 1028 ELF-------------------------------------GGGTAELEL-TEPDDPLTAGIEISARPPGKKLQSLSLLSG 1069 (1163)
T ss_pred HhC-------------------------------------CCCeeEEEe-CCCCchhhcCcEEEEECCCCCccchhhcCC
Confidence 974 699999999 677889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q psy834 539 GERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSR 618 (926)
Q Consensus 539 GEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R 618 (926)
|||||+|||||||||+|+| +|||++ ||||||| |++ ||.|
T Consensus 1070 GEKsLtAlAllFAi~~~~P-----aPf~vL----------DEVDAaL------------------------D~~--Nv~r 1108 (1163)
T COG1196 1070 GEKSLTALALLFAIQKYRP-----APFYVL----------DEVDAAL------------------------DDA--NVER 1108 (1163)
T ss_pred cHHHHHHHHHHHHHHhhCC-----CCeeee----------ccchhhc------------------------cHH--HHHH
Confidence 9999999999999999999 999999 9999999 999 9999
Q ss_pred hhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCCCc
Q psy834 619 RAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSPNT 669 (926)
Q Consensus 619 ~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~~~ 669 (926)
+ |++|.+|+ .+|.|+| ||.+.||..+|++|||||.+.||...
T Consensus 1109 ~-------~~~i~e~s--~~sQFIvIThr~~~m~~ad~l~GVtm~~~GvS~v 1151 (1163)
T COG1196 1109 V-------ARLIKEMS--KETQFIVITHRKGTMEAADRLVGVTMQEKGVSKV 1151 (1163)
T ss_pred H-------HHHHHHhC--cCCeEEEEEcChHHHHHHHHHeeeEeecCCceEE
Confidence 9 99999999 5888999 99999999999999999999998643
No 2
>KOG0964|consensus
Probab=100.00 E-value=9.8e-40 Score=369.99 Aligned_cols=255 Identities=13% Similarity=0.166 Sum_probs=211.2
Q ss_pred HhhccccccCchhhhhhh---hCCCCCCCcccCCccccCCCccccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy834 338 LYKKSCISFSPRRESLDS---IGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYE 414 (926)
Q Consensus 338 l~~K~~il~skR~E~IRk---LGsLPeeA~s~ekYss~eiPll~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELe 414 (926)
+.++++++..||+||+.+ ||+||++|| .+|.......+++.+..|..+|. +|.++|+||++||..|.+|+++|.
T Consensus 914 ~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf--~ky~~~~~~el~kkL~~~neelk-~ys~VNKkAldQf~nfseQre~L~ 990 (1200)
T KOG0964|consen 914 LVRRKHMLLKKREECCEKIRELGVLPEDAF--EKYQDKKSKELMKKLHRCNEELK-GYSNVNKKALDQFVNFSEQRESLK 990 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHH--HHhccCCHHHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHHHH
Confidence 456677888899988776 599999997 46988888888899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcc
Q psy834 415 ADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQ 494 (926)
Q Consensus 415 aRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFsps 494 (926)
++.++|+.+.++|.++|..||++|.+++..||++|+++|.+||.+|| |+|.|.++|....++- ..
T Consensus 991 ~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~LV--------------p~G~a~iim~k~d~~~-d~ 1055 (1200)
T KOG0964|consen 991 KRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRLV--------------PGGTALIIMRKRDNAN-DH 1055 (1200)
T ss_pred HHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC--------------CCCceeehhhcccccc-cc
Confidence 99999999999999999999999999999999999999999999998 8999966665443322 11
Q ss_pred cccCCCceeeeeccCCCCCccccceEEEEeCCCC--cccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCC
Q psy834 495 ALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGR--SYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSD 572 (926)
Q Consensus 495 al~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGK--r~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~ 572 (926)
..-++.++++-.-..+..|.| +||.|.|+|.+| +++.|+|||||||||||||||||||+||| ||||.+
T Consensus 1056 ~e~d~~~~~~s~~~~~sv~~y-tGIsI~VSFnskq~E~~~m~QLSGGQKsvvALaLIFaIQrcDP-----APFYlf---- 1125 (1200)
T KOG0964|consen 1056 DEDDGDMDGESNEGKDSVEMY-TGISIKVSFNSKQGETLEMEQLSGGQKSVVALALIFAIQRCDP-----APFYLF---- 1125 (1200)
T ss_pred ccccccccccccccccchhhc-cceeEEEEeecCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-----cchhhH----
Confidence 100011111111123446666 599999999775 78999999999999999999999999999 999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHH
Q psy834 573 PESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRS 651 (926)
Q Consensus 573 ~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~s 651 (926)
||+||-| | | |---+..+++.|||.. +-|+. |-.|-..+
T Consensus 1126 ------DEIDAaL------------------------D-a--------QyR~aVa~lIkelS~~--aQFI~TTFRpEll~ 1164 (1200)
T KOG0964|consen 1126 ------DEIDAAL------------------------D-A--------QYRTAVADLIKELSDS--AQFITTTFRPELLS 1164 (1200)
T ss_pred ------hHHhhhc------------------------c-H--------HHHHHHHHHHHHHhhc--cceEeecccHHHHH
Confidence 9999999 3 2 3333447899999996 66999 88888888
Q ss_pred hhhhhcceee
Q psy834 652 RVQSSLTIQS 661 (926)
Q Consensus 652 r~~~~~~v~~ 661 (926)
-.|..|||-.
T Consensus 1165 vAdKfygV~f 1174 (1200)
T KOG0964|consen 1165 VADKFYGVKF 1174 (1200)
T ss_pred HHHhhhceee
Confidence 8899999964
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.96 E-value=1.5e-29 Score=284.01 Aligned_cols=198 Identities=18% Similarity=0.297 Sum_probs=181.3
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKV 459 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKe 459 (926)
.+..+..++. ++..++++|+++|+++.++|+++..++++|.++++.|.+.|+.|++++++.|+.||+.|+.+|..||..
T Consensus 959 ~l~~l~~~i~-~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~ 1037 (1164)
T TIGR02169 959 ELQRVEEEIR-ALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAE 1037 (1164)
T ss_pred HHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555565 666666999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchh
Q psy834 460 HLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGG 539 (926)
Q Consensus 460 LV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGG 539 (926)
|+ ||.|.|.+ .+++|||..||.|.|.|+|+.+..+..||||
T Consensus 1038 l~--------------------------------------~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgg 1078 (1164)
T TIGR02169 1038 LS--------------------------------------GGTGELIL-ENPDDPFAGGLELSAKPKGKPVQRLEAMSGG 1078 (1164)
T ss_pred Hh--------------------------------------CCeEEEEe-cCCCCcccCCeEEEEEcCCCCCCcchhcCcc
Confidence 74 78999998 6678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q psy834 540 ERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRR 619 (926)
Q Consensus 540 EKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~ 619 (926)
||+++||||+||++.+.| .|||++ ||+++.+ |.. |+.++
T Consensus 1079 e~~~~~la~~~~~~~~~~-----~~~~~l----------DE~~~~l------------------------d~~--~~~~~ 1117 (1164)
T TIGR02169 1079 EKSLTALSFIFAIQRYKP-----SPFYAF----------DEVDMFL------------------------DGV--NVERV 1117 (1164)
T ss_pred hHHHHHHHHHHHHHhcCC-----CCcEEe----------ccccccc------------------------CHH--HHHHH
Confidence 999999999999999999 999999 9999999 888 89999
Q ss_pred hhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCC
Q psy834 620 AQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSP 667 (926)
Q Consensus 620 ~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~ 667 (926)
..+|.+++. ++.|+| ||++.+|...|+++||+|.|.||-
T Consensus 1118 -------~~~l~~~~~--~~~~i~~t~~~~~~~~~d~~~~~~~~~~g~S 1157 (1164)
T TIGR02169 1118 -------AKLIREKAG--EAQFIVVSLRSPMIEYADRAIGVTMRRNGES 1157 (1164)
T ss_pred -------HHHHHHhcC--CCeEEEEECcHHHHHhcceeEeEEEecCCee
Confidence 778888876 366888 999999999999999999999974
No 4
>KOG0018|consensus
Probab=99.96 E-value=4.6e-30 Score=294.22 Aligned_cols=256 Identities=23% Similarity=0.322 Sum_probs=195.5
Q ss_pred cccccccccCCchhhHHHHHHHHHhhccccccCchhhhhhh--hCCCCCCCccc--CCccccCCCc---cccChhHHHHH
Q psy834 315 LCGTLNFQDCTPHPLIIKIQQVFLYKKSCISFSPRRESLDS--IGSSPSKQHSV--GHTTSCNIPL---RWQDRGGVCRQ 387 (926)
Q Consensus 315 l~g~~n~~d~~~h~Li~K~qq~fl~~K~~il~skR~E~IRk--LGsLPeeA~s~--ekYss~eiPl---l~KdleeL~~e 387 (926)
|...|+-+|...|-+-.++.+.-.-+..-+.+-|- |+|.= +|-.+.+.... =+|+. +|. +.++++++...
T Consensus 868 ~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl-~~I~vPl~~gs~~d~~~~ieidy~~--L~~~y~L~~kl~e~~~~ 944 (1141)
T KOG0018|consen 868 LVKELTKLDKEITSIESKIERKESERHNLLSKCKL-EDIEVPLSSGSMDDIVIGIEIDYSG--LPREYKLQQKLEEKQSV 944 (1141)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh-ccccccccCCCccccceeccccccc--ccHHHHHHHHHHHHHHH
Confidence 44556677777777777665544433332222221 22220 10011111000 12322 222 22344444555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy834 388 HDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQ 467 (926)
Q Consensus 388 L~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssP 467 (926)
|. ++. -|+||++.|+.+. +.++..+++.++++.+.+++.|+.++++|.++|++||++|+.+++.||+.|+ |
T Consensus 945 l~-~~~-Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Lt-n---- 1015 (1141)
T KOG0018|consen 945 LN-RIA-PNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKELT-N---- 1015 (1141)
T ss_pred HH-HhC-cchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c----
Confidence 55 442 2389999999999 9999999999999999999999999999999999999999999999999997 1
Q ss_pred hhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHH
Q psy834 468 VYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALA 547 (926)
Q Consensus 468 i~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALA 547 (926)
..|+|+|.+ +|++|||..||.|.|+||||++++|.+|||||||++|||
T Consensus 1016 -------------------------------t~g~AyL~~-en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLA 1063 (1141)
T KOG0018|consen 1016 -------------------------------TEGQAYLGL-ENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALA 1063 (1141)
T ss_pred -------------------------------cccceeecC-CCCCcchhcCccccccCCccccCchhhcCccHHHHHHHH
Confidence 248999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCC
Q psy834 548 MIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQ 627 (926)
Q Consensus 548 LIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~ 627 (926)
|+||||.|+| |||+|| |||||.| |-- ||.|.|-
T Consensus 1064 LLFaihsy~P-----aPFfvl----------DEiDAAL------------------------Dnt--Ni~kvas------ 1096 (1141)
T KOG0018|consen 1064 LLFAIHSYKP-----APFFVL----------DEIDAAL------------------------DNT--NIGKVAS------ 1096 (1141)
T ss_pred HHHHhccCCC-----CCceeh----------hhHHHHh------------------------hhc--cHHHHHH------
Confidence 9999999999 999999 9999999 655 9999943
Q ss_pred CChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCC
Q psy834 628 NPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGS 666 (926)
Q Consensus 628 ~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~ 666 (926)
-+. +.|--|+| +-.+.--...|.|.||.--+.++
T Consensus 1097 -yIr----~~~~Q~IvISLK~~~y~kadaLVGvyr~~~~~ 1131 (1141)
T KOG0018|consen 1097 -YIR----SSNFQFIVISLKEEFYQKADALVGVYRDQEDC 1131 (1141)
T ss_pred -HHh----cCCceEEEEeccHHHhhhhhceeeeccCcccc
Confidence 222 55677999 88888889999999999875555
No 5
>KOG0996|consensus
Probab=99.93 E-value=5e-26 Score=262.87 Aligned_cols=192 Identities=20% Similarity=0.273 Sum_probs=171.0
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKV 459 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKe 459 (926)
++..|+.+++ .+..+...++.+|....+.|..-...++......++.++.++.|+++|.+.||..|..|+.++.++|+.
T Consensus 1079 ~i~~lE~~~~-~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQm 1157 (1293)
T KOG0996|consen 1079 KIALLEKRVE-ELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQM 1157 (1293)
T ss_pred HHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666 665555799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchh
Q psy834 460 HLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGG 539 (926)
Q Consensus 460 LV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGG 539 (926)
+| .||+|+|++ .|..|||..||.|+|+||.|.|+.|.+||||
T Consensus 1158 IT-------------------------------------~GGdAeLEl-VDslDPFseGV~FSVrPpKKSWK~I~NLSGG 1199 (1293)
T KOG0996|consen 1158 IT-------------------------------------LGGDAELEL-VDSLDPFSEGVMFSVRPPKKSWKNISNLSGG 1199 (1293)
T ss_pred Hh-------------------------------------cCCcceeEe-eccCCCcccCceEEeeCchhhhhhcccCCcc
Confidence 98 399999999 7789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q psy834 540 ERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRR 619 (926)
Q Consensus 540 EKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~ 619 (926)
||||.+||||||+|+|+| .||||- ||+||.| |-- ||+=.
T Consensus 1200 EKTLSSLALVFALH~YkP-----TPlYVM----------DEIDAAL------------------------Dfk--NVSIV 1238 (1293)
T KOG0996|consen 1200 EKTLSSLALVFALHHYKP-----TPLYVM----------DEIDAAL------------------------DFK--NVSIV 1238 (1293)
T ss_pred hhHHHHHHHHHHHHccCC-----CCceeh----------hhHHHhh------------------------ccc--cchhH
Confidence 999999999999999999 999999 9999999 777 99988
Q ss_pred hhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhccee
Q psy834 620 AQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTIQ 660 (926)
Q Consensus 620 ~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v~ 660 (926)
.|-+.|++. |.-|+|-+=.--|= =-++|+||-
T Consensus 1239 -------anYIkErTk--NAQFIIISLRnnMFELa~rLvGIY 1271 (1293)
T KOG0996|consen 1239 -------ANYIKERTK--NAQFIIISLRNNMFELANRLVGIY 1271 (1293)
T ss_pred -------HHHHHHhcc--CCeEEEEEehhhHHHHHhhheeeE
Confidence 677889888 66699966554443 347888874
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.90 E-value=2.9e-23 Score=231.80 Aligned_cols=199 Identities=21% Similarity=0.315 Sum_probs=175.9
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLL----DRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKF---ENMYDFVNDN 452 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfe----EQyEELeaRrEELdKekeSIrELIEeLDKEKrEAF---mkTFKQVNen 452 (926)
.+..+..++. .|+. |+++|+.+. ++|++|..+++||..++..|.+.|..+++..++.| ..+|..|+.+
T Consensus 966 ~~~~l~~~i~-~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~ 1040 (1179)
T TIGR02168 966 DEEEARRRLK-RLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQ 1040 (1179)
T ss_pred CHHHHHHHHH-HHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666 6665 999999988 99999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccc
Q psy834 453 IDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVG 532 (926)
Q Consensus 453 FsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~Qs 532 (926)
|..+|..|.. .+| .||.++|.+ ++++|||..||.|.|.|+++....
T Consensus 1041 f~~~F~~lf~--------------------------~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1179)
T TIGR02168 1041 VNENFQRVFP--------------------------KLF-------GGGEAELRL-TDPEDLLEAGIEIFAQPPGKKNQN 1086 (1179)
T ss_pred HHHHHHHHHH--------------------------HHh-------CCCeEEEEe-CCCCcccccCceEEEeCCCCcccc
Confidence 9999999861 134 589999999 677899999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||++||++.+.| .||+.+ ||+++-+ |..
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~-----~~~~~l----------DE~~~~l------------------------d~~ 1127 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKP-----APFCIL----------DEVDAPL------------------------DDA 1127 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCC-----CCeEEe----------cCccccc------------------------cHH
Confidence 9999999999999999999999999 999999 9999988 666
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCC
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSP 667 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~ 667 (926)
|...+ .++|..++.. .+ |+| +|++..+..+|+.+||++.|.|+-
T Consensus 1128 --~~~~~-------~~~~~~~~~~-~~-~i~~sh~~~~~~~~d~~~~~~~~~~~~~ 1172 (1179)
T TIGR02168 1128 --NVERF-------ANLLKEFSKN-TQ-FIVITHNKGTMEVADQLYGVTMQEKGVS 1172 (1179)
T ss_pred --HHHHH-------HHHHHHhccC-CE-EEEEEcChhHHHHhhhHeeeeeccCCce
Confidence 77777 6778888764 33 665 999999999999999999999953
No 7
>KOG0933|consensus
Probab=99.82 E-value=8.8e-20 Score=209.62 Aligned_cols=151 Identities=19% Similarity=0.296 Sum_probs=131.6
Q ss_pred ChhHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQL-NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYK 458 (926)
Q Consensus 380 dleeL~~eL~~KLk~vn-kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFK 458 (926)
.+.++..... +|...+ +++++-++..++++.+|..+++.+.+.+.+|.+-|+.||+++++.+..+|.+||..|..||.
T Consensus 966 ~l~~Lq~k~~-~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs 1044 (1174)
T KOG0933|consen 966 ELKKLQEKKE-KLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFS 1044 (1174)
T ss_pred HHHHhhHHHH-HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444 444333 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCch
Q psy834 459 VHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSG 538 (926)
Q Consensus 459 eLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSG 538 (926)
.|. .|..|.|...+ ...|..|++|.|.|.|-.-..+..|||
T Consensus 1045 ~LL-------------------------------------Pga~AkL~Ppe--g~~~~dGLEvkV~~G~iWKeSL~ELSG 1085 (1174)
T KOG0933|consen 1045 TLL-------------------------------------PGAMAKLEPPE--GKTVLDGLEVKVKFGGIWKESLSELSG 1085 (1174)
T ss_pred HhC-------------------------------------CCccccccCCC--CCccccceEEEEEeCccHHHHHHHhcC
Confidence 986 26778887732 334667999999996666678999999
Q ss_pred hHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 539 GERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 539 GEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
||+|||||+||||+.+|+| ||||.+ |||||.|
T Consensus 1086 GQRSLVALsLIlamL~fkP-----APlYIL----------DEVDAAL 1117 (1174)
T KOG0933|consen 1086 GQRSLVALSLILAMLKFKP-----APLYIL----------DEVDAAL 1117 (1174)
T ss_pred chHHHHHHHHHHHHHcCCC-----Cceeeh----------hhhHHhh
Confidence 9999999999999999999 999999 9999999
No 8
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.41 E-value=6.6e-14 Score=133.32 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=71.2
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++||||+||+++++| .|||++ ||||+.| |+.
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~-----~p~~il----------DEvd~~L------------------------D~~- 174 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKP-----SPFLIL----------DEVDAAL------------------------DEQ- 174 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS-------SEEEE----------ESTTTTS-------------------------HH-
T ss_pred cccccccccccccccccccccccc-----cccccc----------ccccccc------------------------ccc-
Confidence 489999999999999999999999 999999 9999999 888
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCC
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSP 667 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~ 667 (926)
|..++ +.+|.+.+. +..|+| ||.+.+++.+|..+||+|.|.|+-
T Consensus 175 -~~~~l-------~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~~~~v~~~~~g~~ 219 (220)
T PF02463_consen 175 -NRKRL-------ADLLKELSK--QSQFIITTHNPEMFEDADKLIGVTMVENGVS 219 (220)
T ss_dssp -HHHHH-------HHHHHHHTT--TSEEEEE-S-HHHHTT-SEEEEEEECCTTCE
T ss_pred -ccccc-------ccccccccc--ccccccccccccccccccccccccccccccC
Confidence 89999 888988876 466888 999999999999999999999983
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=99.11 E-value=2.3e-09 Score=121.84 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=69.4
Q ss_pred ceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhcc--------ccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCC
Q psy834 518 GMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKL--------VVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPN 589 (926)
Q Consensus 518 GVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKc--------DP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~ 589 (926)
+|.+ +.++|+ ...+..||||||.++||||.|||.++ .| .|++++ ||..+.+
T Consensus 766 ~i~~-~~~~g~-~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~-----~~~~il----------DEp~~~l---- 824 (880)
T PRK02224 766 ELTV-YQKDGE-PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAP-----LPPLIL----------DEPTVFL---- 824 (880)
T ss_pred ceee-eCCCCC-ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCC-----CCceEe----------cCCcccC----
Confidence 4444 334444 55788999999999999999998763 23 466778 7877777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHhhhhhccee
Q psy834 590 PHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSRVQSSLTIQ 660 (926)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr~~~~~~v~ 660 (926)
|.. ++.++ +++|..++.... +=++|+|++-.+..+|+.++|+
T Consensus 825 --------------------D~~--~~~~~-------~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~ 867 (880)
T PRK02224 825 --------------------DSG--HVSQL-------VDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVE 867 (880)
T ss_pred --------------------CHH--HHHHH-------HHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEee
Confidence 666 77777 778888875444 3445599999999999999985
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=98.89 E-value=6.6e-08 Score=109.63 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=66.3
Q ss_pred eEEEEeCCCCcccccccCchhHHHHHHHHHHHHHh--ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 519 MNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIW--KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNP 596 (926)
Q Consensus 519 VeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQ--KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~ 596 (926)
+.+.+.. ++....+..|||||+.++||||.+||- .+.+ .|++++ ||..+.+
T Consensus 773 ~~i~~l~-~g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~-----~~~lil----------DEp~~~l----------- 825 (880)
T PRK03918 773 VKLFVVY-QGKERPLTFLSGGERIALGLAFRLALSLYLAGN-----IPLLIL----------DEPTPFL----------- 825 (880)
T ss_pred eEEEEeC-CCCcCChhhCCHhHHHHHHHHHHHHHHHHhcCC-----CCeEEE----------eCCCccc-----------
Confidence 4454444 444678899999999999999877664 3444 578888 7766666
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecC
Q psy834 597 NPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQ 664 (926)
Q Consensus 597 ~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~ 664 (926)
|.. +..++ .+.|..+.....|=++|||++.....+|+.+.|.....
T Consensus 826 -------------D~~--~~~~l-------~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~~~~ 871 (880)
T PRK03918 826 -------------DEE--RRRKL-------VDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSLEGG 871 (880)
T ss_pred -------------CHH--HHHHH-------HHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEecCC
Confidence 444 44444 45566655444455566999988888888888776653
No 11
>KOG0979|consensus
Probab=98.74 E-value=1.9e-07 Score=109.87 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=124.3
Q ss_pred ChhHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQL------NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNI 453 (926)
Q Consensus 380 dleeL~~eL~~KLk~vn------kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenF 453 (926)
+.+++...+.+.....+ ..|+++|+...+++.+|..+++...+..+.|++.|..++..=...+.....+||+.|
T Consensus 836 t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~F 915 (1072)
T KOG0979|consen 836 TMDELDQAITDELTRALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERF 915 (1072)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555444 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCC---cc
Q psy834 454 DATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGR---SY 530 (926)
Q Consensus 454 sEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGK---r~ 530 (926)
..+|..+- ..|...|+. ++.|--.=||.|.|.|-.. .-
T Consensus 916 s~~F~~mg-------------------------------------~aGeV~L~~--~~~DydkwgI~ImVkFR~s~~L~~ 956 (1072)
T KOG0979|consen 916 SQLFSSMG-------------------------------------CAGEVSLEV--NPLDYDKWGIMIMVKFRDSEGLKV 956 (1072)
T ss_pred HHHHhhcc-------------------------------------cCceEEecc--CcccHhHhceEEEEEEccCccccc
Confidence 99999852 234444432 4444222399999999533 23
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
..-+.-||||+|+..+=.++|||-+.| +||-+- ||+--=+
T Consensus 957 L~sh~QSGGERSVSTiLYLlALQ~l~~-----~PFRvV----------DEINQGM 996 (1072)
T KOG0979|consen 957 LDSHRQSGGERSVSTILYLLALQELTP-----APFRVV----------DEINQGM 996 (1072)
T ss_pred ccccccCCcchHHHHHHHHHHHhhccC-----CCeeeh----------hhhhcCC
Confidence 456778999999999999999999999 999999 9987666
No 12
>PRK10869 recombination and repair protein; Provisional
Probab=98.73 E-value=2.5e-07 Score=103.21 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=78.5
Q ss_pred ceEEEEeC-CCCcccccc-cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 518 GMNFSCTP-QGRSYVGIQ-HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN 595 (926)
Q Consensus 518 GVeISVSP-PGKr~QsIQ-QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~ 595 (926)
.|+|.+++ ||+..+++. .|||||+++++||+.+++..+++ .|++++ ||+|+-+
T Consensus 411 ~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~-----~~~li~----------DEpd~gl---------- 465 (553)
T PRK10869 411 RIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKME-----TPALIF----------DEVDVGI---------- 465 (553)
T ss_pred EEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCC-----CCEEEE----------ECCCCCC----------
Confidence 57888876 677777754 79999999999999999988887 799999 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecC
Q psy834 596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQ 664 (926)
Q Consensus 596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~ 664 (926)
|.. ...++ ++.|.+++.. .|=++|||.|-..+..|+.|-|.-...
T Consensus 466 --------------d~~--~~~~v-------~~~l~~l~~~-~qvi~iTH~~~~~~~ad~~~~v~k~~~ 510 (553)
T PRK10869 466 --------------SGP--TAAVV-------GKLLRQLGES-TQVMCVTHLPQVAGCGHQHFFVSKETD 510 (553)
T ss_pred --------------CHH--HHHHH-------HHHHHHHhcC-CEEEEEecCHHHHHhCCEEEEEecccc
Confidence 554 56666 7788999753 444555999988888899988865443
No 13
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.70 E-value=3.4e-07 Score=101.62 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=78.4
Q ss_pred ceEEEEeC-CCCccccc-ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 518 GMNFSCTP-QGRSYVGI-QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN 595 (926)
Q Consensus 518 GVeISVSP-PGKr~QsI-QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~ 595 (926)
.|+|.+++ +|+..+++ ..|||||+++++||+.+++..+++ .|++++ ||+++-+
T Consensus 421 ~v~f~~~~n~g~~~~pl~~~lSgGe~~rv~la~~l~~~~~~~-----~~~lil----------DEp~~gl---------- 475 (563)
T TIGR00634 421 QVEFLFSANTGEPVKPLAKVASGGELSRVMLALKVVLSSSAA-----VTTLIF----------DEVDVGV---------- 475 (563)
T ss_pred EEEEEEecCCCCCCCChhhhcCHhHHHHHHHHHHHhhCCCCC-----CCEEEE----------ECCCCCC----------
Confidence 58888877 68777877 689999999999999999877666 699999 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecC
Q psy834 596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQ 664 (926)
Q Consensus 596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~ 664 (926)
|.. +..++ ...|.+++. ..|=++|||.|-.+...|+.+.|.-...
T Consensus 476 --------------d~~--~~~~~-------~~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~k~~~ 520 (563)
T TIGR00634 476 --------------SGE--TAQAI-------AKKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVEKEGL 520 (563)
T ss_pred --------------CHH--HHHHH-------HHHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEEEccC
Confidence 555 56666 667888875 3444555999999998999988865543
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.52 E-value=1.4e-06 Score=94.31 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=62.5
Q ss_pred EEEeCCCCcccccccCchhHHHHHHHHHHHHHhc-------cccCCCCCCceecCCCCCCCCCCCCCC-CCCCCCCCCCC
Q psy834 521 FSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWK-------LVVRVQQLRPLTPPPQSDPESGTQGEL-SPPTPGPNPHS 592 (926)
Q Consensus 521 ISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQK-------cDP~V~q~aPi~~~~~~~~~~~~~~Ev-~~p~~~~~~~~ 592 (926)
..+...|.....+..||||||.+++||+.||+.. .+| +|+.+ ||. ++-+
T Consensus 454 ~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~------~~lil----------DEp~~~~l------- 510 (562)
T PHA02562 454 ETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDT------NLLIL----------DEVFDGAL------- 510 (562)
T ss_pred hHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCc------CeEEE----------ecccCccc-------
Confidence 3344445444577899999999999999998522 244 78888 776 3556
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee
Q psy834 593 RVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ 660 (926)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~ 660 (926)
|.. +..++ .+.|.++ ...|-++|+|++..+..+|+.+.+.
T Consensus 511 -----------------d~~--~~~~~-------~~~l~~~--~~~~iiiish~~~~~~~~d~~~~l~ 550 (562)
T PHA02562 511 -----------------DAE--GTKAL-------LSILDSL--KDTNVFVISHKDHDPQKFDRHLKME 550 (562)
T ss_pred -----------------chh--HHHHH-------HHHHHhC--CCCeEEEEECchhchhhhhcEEEEE
Confidence 544 56666 5566666 2346666799998889999887664
No 15
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.28 E-value=2.6e-05 Score=88.19 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeee
Q psy834 426 ILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFL 505 (926)
Q Consensus 426 SIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeL 505 (926)
.+..+.+.|+.-+..........+.+.+.++|++|... .+-...+
T Consensus 484 ~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k-----------------------------------~~~~~~v 528 (650)
T TIGR03185 484 IADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK-----------------------------------HNLISRL 528 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------------cCceeEE
Confidence 33444555555555555566667888888888887510 0001233
Q ss_pred eccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhcccc
Q psy834 506 DITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 506 dLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
.+ + .+.| .+.+.-..+....+..||||||.++||||++||.++..
T Consensus 529 ~i-d--~~~~----~~~l~~~~g~~~~~~~lS~Ge~~~~~la~~~al~~~~~ 573 (650)
T TIGR03185 529 KI-D--PETF----AVSLYDNNGKHIDKERLSAGERQILAIALLWGLAKVSG 573 (650)
T ss_pred EE-c--CCce----eEEEEcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33 1 1223 33333333456788999999999999999999988654
No 16
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.05 E-value=9.2e-05 Score=86.63 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCC
Q psy834 399 EQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHT--RRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWP 476 (926)
Q Consensus 399 AIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKE--KrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP 476 (926)
.++++.....+++.+..+.+.+.+....+..+-..+.+. +...+......|...+..+|..++.+
T Consensus 717 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~------------- 783 (908)
T COG0419 717 LIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKLSLN------------- 783 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 444555555555555566666665555555555555555 67777777777777777777776511
Q ss_pred CcccchhhhhhccccCcccccCCCceeeeecc-CCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhcc
Q psy834 477 KKKENLVIVVQSNLFSPQALTQSFGHAFLDIT-GAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKL 555 (926)
Q Consensus 477 ~GkGNLvIv~qSnLFspsal~qgGGsAeLdLt-EDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKc 555 (926)
..++... ...+.. +|..|.|.-++. +..+..|||||+.++||||-+||..+
T Consensus 784 -------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~-~r~~~~LSGGE~~~~sLalrLALs~~ 835 (908)
T COG0419 784 -------------------------RYDLRRLTIRKDGN--GGLVVVVYDGGE-VRPIKTLSGGERFLASLALRLALSDL 835 (908)
T ss_pred -------------------------cHHHHHHHHHhccc--cceEEEEecCCC-ccccccCCchHHHHHHHHHHHHHHHH
Confidence 1111000 000000 133444444444 78999999999999999999999877
Q ss_pred ccCCCCC--CceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhh
Q psy834 556 VVRVQQL--RPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEV 633 (926)
Q Consensus 556 DP~V~q~--aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~ 633 (926)
-- .- -++..+ ||=-.=| |.. ++++. -..|.++
T Consensus 836 ~~---~~~~l~~l~L----------DEpf~~L------------------------D~e--~l~~l-------~~~l~~i 869 (908)
T COG0419 836 LQ---GRARLELLFL----------DEPFGTL------------------------DEE--RLEKL-------AEILEEL 869 (908)
T ss_pred Hh---cccCCCeeEe----------eCCCCCC------------------------CHH--HHHHH-------HHHHHHH
Confidence 54 22 355566 4422222 444 67777 5567888
Q ss_pred ccCCCceeEeecChhhHHhhhhhcceeeec
Q psy834 634 SSSPNTRSRVQSSPTTRSRVQSSLTIQSAE 663 (926)
Q Consensus 634 ~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE 663 (926)
.+...+=-+|+|.+--..|++..+-|.-..
T Consensus 870 ~~~~~qiiIISH~eel~e~~~~~i~V~k~~ 899 (908)
T COG0419 870 LSDGRQIIIISHVEELKERADVRIRVKKDG 899 (908)
T ss_pred HhcCCeEEEEeChHHHHHhCCeEEEEEecC
Confidence 776444455599999999999999998776
No 17
>PRK01156 chromosome segregation protein; Provisional
Probab=97.93 E-value=0.00031 Score=81.37 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=60.5
Q ss_pred CcccccccCchhHHHHHHHHHHHHHhc--cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 528 RSYVGIQHLSGGERTLAALAMIFTIWK--LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPN 605 (926)
Q Consensus 528 Kr~QsIQQLSGGEKSLVALALIFAIQK--cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~ 605 (926)
.....+..||||||.++||||-+||-+ +.+ .+|+.+ ||..+.+
T Consensus 794 ~~~~~~~~lS~G~~~~~~la~rlala~~l~~~-----~~~lil----------DEpt~~l-------------------- 838 (895)
T PRK01156 794 GMVEGIDSLSGGEKTAVAFALRVAVAQFLNND-----KSLLIM----------DEPTAFL-------------------- 838 (895)
T ss_pred CccCccccCCHhHHHHHHHHHHHHHHHHhccC-----CCeEEE----------eCCCCcC--------------------
Confidence 345678899999999999998888743 344 588888 8866666
Q ss_pred CCCCCCCCCchhhhhhcccCCCCChhhhc-cCC--CceeEeecChhhHHhhhhhcceeeecCCC
Q psy834 606 PNPNSRANPNLSRRAQANNSAQNPLPEVS-SSP--NTRSRVQSSPTTRSRVQSSLTIQSAEQGS 666 (926)
Q Consensus 606 ~~~~~~a~~N~~R~~~~~~~~~~~l~e~~-~~~--~tr~~v~~~~~t~sr~~~~~~v~~aE~G~ 666 (926)
|+. +...+ .+.|.... ... .|=++|||++....-+|+.+.|+-- .|+
T Consensus 839 ----D~~--~~~~l-------~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~~~~~-~~~ 888 (895)
T PRK01156 839 ----DED--RRTNL-------KDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVKKS-SGS 888 (895)
T ss_pred ----CHH--HHHHH-------HHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEEEEec-CCe
Confidence 555 44444 33343322 221 2345569999988888888888753 443
No 18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.84 E-value=8.4e-05 Score=85.06 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=79.0
Q ss_pred cccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 377 RWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDAT 456 (926)
Q Consensus 377 l~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEI 456 (926)
+...++.+-..+. .|+.+.++|+++|+.+.+++++|...+++|.+.+.+|.+.|..+..++.++|+.+|+.++..|..+
T Consensus 970 l~~~i~~lg~aie-e~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~l 1048 (1179)
T TIGR02168 970 ARRRLKRLENKIK-ELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRV 1048 (1179)
T ss_pred HHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888 999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy834 457 YKVHL 461 (926)
Q Consensus 457 FKeLV 461 (926)
|..|+
T Consensus 1049 f~~~~ 1053 (1179)
T TIGR02168 1049 FPKLF 1053 (1179)
T ss_pred HHHHh
Confidence 99998
No 19
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.84 E-value=1.7e-05 Score=77.42 Aligned_cols=92 Identities=25% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNP 606 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~ 606 (926)
+.....+..||||||.+++||..+++..+.| .++..+ ||..+-+
T Consensus 105 ~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~-----~~illl----------DEP~~~L--------------------- 148 (197)
T cd03278 105 GKKVQRLSLLSGGEKALTALALLFAIFRVRP-----SPFCVL----------DEVDAAL--------------------- 148 (197)
T ss_pred CccccchhhcCHHHHHHHHHHHHHHHhccCC-----CCEEEE----------eCCcccC---------------------
Confidence 3445678899999999999999998877778 789999 8877777
Q ss_pred CCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCCC
Q psy834 607 NPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSP 667 (926)
Q Consensus 607 ~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~~ 667 (926)
|.. +...+ .+.|.++.. ..|=.+|+|++-.+...|+.++|+|.+.|++
T Consensus 149 ---D~~--~~~~l-------~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~~~~~~~ 196 (197)
T cd03278 149 ---DDA--NVERF-------ARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTMQESGVS 196 (197)
T ss_pred ---CHH--HHHHH-------HHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEeccCCCC
Confidence 555 56666 667778765 2343344999999999999999999999986
No 20
>KOG0250|consensus
Probab=97.65 E-value=0.00044 Score=83.06 Aligned_cols=98 Identities=18% Similarity=0.348 Sum_probs=75.8
Q ss_pred EEEE-eCCCC-c--ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 520 NFSC-TPQGR-S--YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN 595 (926)
Q Consensus 520 eISV-SPPGK-r--~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~ 595 (926)
+|.| .|+++ + ..++.-|||||||-+.+||++|||..-- .||..+ ||.|-=+
T Consensus 970 ~i~v~~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me-----~Pfr~L----------DEFDVFM---------- 1024 (1074)
T KOG0250|consen 970 SISVKLPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVME-----CPFRAL----------DEFDVFM---------- 1024 (1074)
T ss_pred chhhccCCCCcccccccccccCcccchHHHHHHHHHHhHhhc-----Cchhhh----------hHHHHHH----------
Confidence 5566 55433 3 7899999999999999999999999999 999999 9999877
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCC
Q psy834 596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSP 667 (926)
Q Consensus 596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~ 667 (926)
| +|.|. -+-++|-+|+..--+-|++ | |--|+-+.+..||+..+-+-|
T Consensus 1025 --------------D----~vNRK-----i~~dlLv~~a~~~~~Q~IfiT--Pqdi~~l~~~~~i~v~rm~~p 1072 (1074)
T KOG0250|consen 1025 --------------D----MVNRK-----ISMDLLVDFAKKKGRQFIFIT--PQDISKLNSDDGIVVFRMSDP 1072 (1074)
T ss_pred --------------H----HHHHH-----HHHHHHHHHHHhhcceEEEEc--cccHhhhccccceEEeeccCC
Confidence 3 46776 2356777777666666776 5 556777777888887766554
No 21
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.48 E-value=6.9e-05 Score=74.70 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=72.8
Q ss_pred EeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 523 CTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRA 602 (926)
Q Consensus 523 VSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~ 602 (926)
..|+++....+..||||||.+++||..|+...|.| .+++.+ ||..+-+
T Consensus 143 ~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~-----p~~lll----------DEPt~~L----------------- 190 (247)
T cd03275 143 KNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQP-----APFFVL----------DEVDAAL----------------- 190 (247)
T ss_pred ccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCC-----CCEEEE----------ecccccC-----------------
Confidence 34566777888999999999999999999988888 789999 8877777
Q ss_pred CCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeee
Q psy834 603 NPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSA 662 (926)
Q Consensus 603 ~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~a 662 (926)
|.. ....+ .+.|.++.....|=++|+|++..+.-.|+.+++.+-
T Consensus 191 -------D~~--~~~~l-------~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~~ 234 (247)
T cd03275 191 -------DNT--NVGKV-------ASYIREQAGPNFQFIVISLKEEFFSKADALVGVYRD 234 (247)
T ss_pred -------CHH--HHHHH-------HHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEec
Confidence 444 45556 556777776545656669999999999999998764
No 22
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.22 E-value=0.0003 Score=70.01 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=67.9
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
...+..||||||.+++||..||...+.| ..++.+ ||..+.+
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~-----~~illl----------DEPt~~l------------------------ 201 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKP-----APMYIL----------DEVDAAL------------------------ 201 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccC-----CCEEEE----------eCCCcCC------------------------
Confidence 3467799999999999999999877777 789999 8877777
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCC
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGS 666 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~ 666 (926)
|.. +...+ ...|.++.. .-|=.+|+|.+-.+...|+.++|+|. +|+
T Consensus 202 d~~--~~~~~-------~~~l~~~~~-g~~ii~iSH~~~~~~~~d~v~~~~~~-~~~ 247 (251)
T cd03273 202 DLS--HTQNI-------GRMIKTHFK-GSQFIVVSLKEGMFNNANVLFRTRFV-DGT 247 (251)
T ss_pred CHH--HHHHH-------HHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEEEee-CCE
Confidence 555 55555 556777754 22334449999999999999999986 664
No 23
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.0063 Score=72.65 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=66.8
Q ss_pred CCcccccccCchhHHHHHHHHHHHHH-------hccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTI-------WKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPN 599 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAI-------QKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~ 599 (926)
+.....+..|||||+-+++||+.+++ ...+| ++.++ ||-..-+
T Consensus 942 ~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~------~~l~l----------DEp~~~L-------------- 991 (1042)
T TIGR00618 942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVL------DSLFI----------DEGFGSL-------------- 991 (1042)
T ss_pred CCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCC------CeEEe----------cCCCCCC--------------
Confidence 34557889999999999999999998 44566 67777 6655555
Q ss_pred CCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCC
Q psy834 600 SRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGS 666 (926)
Q Consensus 600 ~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~ 666 (926)
|.. .+..+ .+.|.++.....|=++|+|.+--..++..-+.|.-...|+
T Consensus 992 ----------D~~--~~~~~-------~~~l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~~gS 1039 (1042)
T TIGR00618 992 ----------DED--SLDRA-------IGILDAIREGSKMIGIISHVPEFRERIPHRILVKKTNAGS 1039 (1042)
T ss_pred ----------CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECCCCc
Confidence 433 45555 6778888765555455699999999998888877665554
No 24
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.10 E-value=0.018 Score=69.45 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=70.5
Q ss_pred ceEEEEeC--CCCcccccccCchhHHHHHHHHHHHHH-----hccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 518 GMNFSCTP--QGRSYVGIQHLSGGERTLAALAMIFTI-----WKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNP 590 (926)
Q Consensus 518 GVeISVSP--PGKr~QsIQQLSGGEKSLVALALIFAI-----QKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~ 590 (926)
|+.+.+.. .++....+..|||||+.+++||+.+++ ...+| .+.++ ||--.-+
T Consensus 930 ~l~~~~~d~~~~~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~------~~l~l----------DEp~~~l----- 988 (1047)
T PRK10246 930 ALELEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRI------DSLFL----------DEGFGTL----- 988 (1047)
T ss_pred CCceeeeehhccCCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCC------CEEEE----------eCCCCcC-----
Confidence 44444332 244557789999999999999999997 22223 45666 5533333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCCCCcc
Q psy834 591 HSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTR 670 (926)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~~~~~ 670 (926)
|.. .+..+ .+.|..+....-|=.+|+|....+.||..-+-|+-.. -..+
T Consensus 989 -------------------D~~--~~~~~-------~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~~---g~g~ 1037 (1047)
T PRK10246 989 -------------------DSE--TLDTA-------LDALDALNASGKTIGVISHVEAMKERIPVQIKVKKIN---GLGY 1037 (1047)
T ss_pred -------------------CHH--HHHHH-------HHHHHHHHHCCCEEEEEecHHHHHHhccceEEEEECC---CCCc
Confidence 333 44555 6678888776556566699999999998888887622 2246
Q ss_pred cccccc
Q psy834 671 SRVQSS 676 (926)
Q Consensus 671 ~~~~~~ 676 (926)
|+|.|.
T Consensus 1038 S~v~~~ 1043 (1047)
T PRK10246 1038 SKLDSA 1043 (1047)
T ss_pred ceeehh
Confidence 776653
No 25
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.99 E-value=0.001 Score=64.38 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=66.2
Q ss_pred eCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 524 TPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRAN 603 (926)
Q Consensus 524 SPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~ 603 (926)
..|.++...+ ||||||..++||..++.+.+.. .++..+ ||.++-+
T Consensus 85 ~~~~~~~~~~--LS~Ge~~r~~Laral~~~~~~~-----p~llil----------DEp~~~L------------------ 129 (178)
T cd03239 85 LVLQGKVEQI--LSGGEKSLSALALIFALQEIKP-----SPFYVL----------DEIDAAL------------------ 129 (178)
T ss_pred EecCCcCccc--CCHHHHHHHHHHHHHHHhcCCC-----CCEEEE----------ECCCCCC------------------
Confidence 3456666676 9999999999999999876666 578888 8888877
Q ss_pred CCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceee
Q psy834 604 PNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQS 661 (926)
Q Consensus 604 ~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~ 661 (926)
|.. +...+ .+.|.+++...-|=..++|.+-.+...|+.+.|+-
T Consensus 130 ------D~~--~~~~i-------~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 130 ------DPT--NRRRV-------SDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred ------CHH--HHHHH-------HHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 544 44455 34677776653444455999999999999999986
No 26
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.86 E-value=0.0015 Score=64.75 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=70.2
Q ss_pred EEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 522 SCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSR 601 (926)
Q Consensus 522 SVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~ 601 (926)
.+.-++.....+..||||||.+++||..|++.+++| .++..+ ||..+.+
T Consensus 114 ~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~-----p~ilil----------DEPt~gL---------------- 162 (212)
T cd03274 114 IAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKP-----TPLYVM----------DEIDAAL---------------- 162 (212)
T ss_pred eeccccccccchhhcCHHHHHHHHHHHHHHhcccCC-----CCEEEE----------cCCCcCC----------------
Confidence 333355556678899999999999999999988877 678888 7877777
Q ss_pred CCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeee
Q psy834 602 ANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSA 662 (926)
Q Consensus 602 ~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~a 662 (926)
|.. +...+ ++.|.++++. .|=.+|+|++..+...|+.++++-.
T Consensus 163 --------D~~--~~~~l-------~~~l~~~~~~-~~~iivs~~~~~~~~~d~v~~~~~~ 205 (212)
T cd03274 163 --------DFR--NVSIV-------ANYIKERTKN-AQFIVISLRNNMFELADRLVGIYKT 205 (212)
T ss_pred --------CHH--HHHHH-------HHHHHHHcCC-CEEEEEECcHHHHHhCCEEEEEEec
Confidence 544 55666 7778888653 3444559999999999999988753
No 27
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0014 Score=66.71 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=67.4
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
......|||||+.+++||+.+++..+++ .++..+ ||..+-+
T Consensus 165 ~~~~~~lS~G~~~r~~la~~~~~~~~~~-----p~vlll----------DEp~~~L------------------------ 205 (276)
T cd03241 165 KPLAKIASGGELSRLMLALKAILARKDA-----VPTLIF----------DEIDTGI------------------------ 205 (276)
T ss_pred chhhhhcChhHHHHHHHHHHHHHhcCCC-----CCEEEE----------ECCccCC------------------------
Confidence 3446689999999999999888766666 789998 8866666
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCC
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGS 666 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~ 666 (926)
|.. ....+ .+.|.++.. ..|-++|+|++..+..+|+.+.+.....|+
T Consensus 206 d~~--~~~~l-------~~~l~~~~~-~~tii~isH~~~~~~~~d~~~~l~~~~~~~ 252 (276)
T cd03241 206 SGE--VAQAV-------GKKLKELSR-SHQVLCITHLPQVAAMADNHFLVEKEVEGG 252 (276)
T ss_pred CHH--HHHHH-------HHHHHHHhC-CCEEEEEechHHHHHhcCcEEEEEEecCCC
Confidence 444 45555 566777765 345556699999999999999998888775
No 28
>PF13514 AAA_27: AAA domain
Probab=96.57 E-value=0.036 Score=66.97 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=58.9
Q ss_pred EEEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCC--CceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 521 FSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQL--RPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNP 598 (926)
Q Consensus 521 ISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~--aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~ 598 (926)
+.|...++....+..||+|=+=-+-|||=||+...-- .+- -||..
T Consensus 1011 l~~~~~~G~~~~~~~LS~GT~dQLYLALRLA~~e~~~--~~~~~lP~Il------------------------------- 1057 (1111)
T PF13514_consen 1011 LVVVRADGERVPVEELSRGTRDQLYLALRLALAELLA--EQGEPLPFIL------------------------------- 1057 (1111)
T ss_pred ceEEecCCeEeeHHHhCHHHHHHHHHHHHHHHHHHHH--hCCCCCcEEe-------------------------------
Confidence 3444445567899999999999999999999876551 011 23322
Q ss_pred CCCCCCCCCCCCCCCCch--hhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcc
Q psy834 599 NSRANPNPNPNSRANPNL--SRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLT 658 (926)
Q Consensus 599 ~~~~~~~~~~~~~a~~N~--~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~ 658 (926)
||.--|. .|. ..++.+|.+|+.... .++ |||+-.+.-+...+|
T Consensus 1058 -----------DD~fvnfDd~R~----~~~l~~L~~ls~~~Q--VI~FTch~~l~~~a~~~~~ 1103 (1111)
T PF13514_consen 1058 -----------DDIFVNFDDERA----RAALELLAELSRRRQ--VIYFTCHEHLVELAREVFG 1103 (1111)
T ss_pred -----------eCCccccCHHHH----HHHHHHHHHhccCCe--EEEEeccHHHHHHHHHhcC
Confidence 2222222 233 234889999998644 555 999999988888765
No 29
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.055 Score=62.47 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=71.3
Q ss_pred ceEEEEeC-CCCcccc-cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 518 GMNFSCTP-QGRSYVG-IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN 595 (926)
Q Consensus 518 GVeISVSP-PGKr~Qs-IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~ 595 (926)
-|.|.++. ||...++ .+-.||||=|++.|||-.++-.... .|..+. ||||.=.-|+
T Consensus 412 ~VeF~istNpG~~~~PL~KvASGGELSRimLAlk~i~~~~~~-----~ptlIF----------DEVD~GIsG~------- 469 (557)
T COG0497 412 KVEFLISTNPGEPLKPLAKVASGGELSRIMLALKVILSRKDD-----TPTLIF----------DEVDTGISGR------- 469 (557)
T ss_pred eEEEEEeCCCCCCCccHHhhcchhHHHHHHHHHHHHHhccCC-----CCeEEE----------ecccCCCChH-------
Confidence 46777777 6777776 5789999999999999999988887 788888 9999988332
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceee
Q psy834 596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQS 661 (926)
Q Consensus 596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~ 661 (926)
-|++- ...|..++.... =+.|||-|-.-++-|.-|-|.-
T Consensus 470 -----------------------~A~aV---g~~L~~Ls~~~Q-Vl~VTHlPQVAa~ad~H~~V~K 508 (557)
T COG0497 470 -----------------------VAQAV---GKKLRRLSEHHQ-VLCVTHLPQVAAMADTHFLVEK 508 (557)
T ss_pred -----------------------HHHHH---HHHHHHHhcCce-EEEEecHHHHHhhhcceEEEEE
Confidence 12221 234777877554 2444999999999998887754
No 30
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.39 E-value=0.0032 Score=61.62 Aligned_cols=84 Identities=23% Similarity=0.251 Sum_probs=62.5
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
...+..||||||..++||..|+++.++| .++..+ ||-.+-+
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~-----~~illl----------DEp~~~l------------------------ 193 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDP-----APFYLF----------DEIDAAL------------------------ 193 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCC-----CCEEEE----------ECCccCC------------------------
Confidence 3567899999999999999999887777 689999 7766666
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeec
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAE 663 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE 663 (926)
|.. +..++ .+.|.++.. .+-+++ +|.+..+..+|+.+.+..-.
T Consensus 194 d~~--~~~~~-------~~~l~~~~~--~~~ii~~~h~~~~~~~~d~i~~l~~~~ 237 (243)
T cd03272 194 DAQ--YRTAV-------ANMIKELSD--GAQFITTTFRPELLEVADKFYGVKFRN 237 (243)
T ss_pred CHH--HHHHH-------HHHHHHHhC--CCEEEEEecCHHHHhhCCEEEEEEEEC
Confidence 433 44455 556677655 455666 88888777788888776543
No 31
>PF13166 AAA_13: AAA domain
Probab=95.89 E-value=0.57 Score=53.33 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=25.9
Q ss_pred cceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhc
Q psy834 517 AGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWK 554 (926)
Q Consensus 517 SGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQK 554 (926)
.|..|... |+ ......||-|||+.+|||..||-..
T Consensus 485 ~~y~l~~~--~~-~~~~~~LSEGEk~~iAf~yFla~l~ 519 (712)
T PF13166_consen 485 KGYKLQRK--GG-SKPAKILSEGEKRAIAFAYFLAELK 519 (712)
T ss_pred CeEEEEEC--CC-CcccCccCHHHHHHHHHHHHHHHHh
Confidence 34455443 32 2344899999999999999999888
No 32
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.73 E-value=0.013 Score=55.40 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=63.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+|||||+.+++||.+++...+.+ .+++.+ ||...-+ |..
T Consensus 75 ~~~lS~G~~~~~~la~~L~~~~~~~-----~~llll----------DEp~~gl------------------------d~~ 115 (162)
T cd03227 75 RLQLSGGEKELSALALILALASLKP-----RPLYIL----------DEIDRGL------------------------DPR 115 (162)
T ss_pred eeeccccHHHHHHHHHHHHhcCCCC-----CCEEEE----------eCCCCCC------------------------CHH
Confidence 3469999999999999999776666 689999 9988888 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCC
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQG 665 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G 665 (926)
+..++ ...|-++... .+.+++ ||.+-.....|+.+.+.....|
T Consensus 116 --~~~~l-------~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~l~~~~~~ 159 (162)
T cd03227 116 --DGQAL-------AEAILEHLVK-GAQVIVITHLPELAELADKLIHIKKVITG 159 (162)
T ss_pred --HHHHH-------HHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEEEEEEecc
Confidence 34444 4445555444 455555 9999999999999988877643
No 33
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.61 E-value=0.0099 Score=61.54 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=55.0
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+...+||||||++||+|=-++- +| +|... || ||- | -|
T Consensus 138 ~~p~eLSGGqqQRVAIARAL~~---~P------~iilA----------DE---PTg--------------------n-LD 174 (226)
T COG1136 138 KKPSELSGGQQQRVAIARALIN---NP------KIILA----------DE---PTG--------------------N-LD 174 (226)
T ss_pred CCchhcCHHHHHHHHHHHHHhc---CC------CeEEe----------eC---ccc--------------------c-CC
Confidence 5578999999999999998886 77 34444 33 550 0 03
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeE-eecChhhHHhhhhhccee
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSR-VQSSPTTRSRVQSSLTIQ 660 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~-v~~~~~t~sr~~~~~~v~ 660 (926)
.. |-... -++|.++....++-.+ |||+|....++||.+-+.
T Consensus 175 ~~--t~~~V-------~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~ 216 (226)
T COG1136 175 SK--TAKEV-------LELLRELNKERGKTIIMVTHDPELAKYADRVIELK 216 (226)
T ss_pred hH--HHHHH-------HHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEe
Confidence 33 34444 6788889887664444 499999999999987654
No 34
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.48 E-value=0.015 Score=57.81 Aligned_cols=77 Identities=22% Similarity=0.112 Sum_probs=54.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
...+||||||.+++||..++. +| . .|..+ ||-.+-+ |
T Consensus 134 ~~~~LSgG~~qrv~laral~~---~p-----~~~llll----------DEPt~gL------------------------D 171 (226)
T cd03270 134 SAPTLSGGEAQRIRLATQIGS---GL-----TGVLYVL----------DEPSIGL------------------------H 171 (226)
T ss_pred ccCcCCHHHHHHHHHHHHHHh---CC-----CCCEEEE----------eCCccCC------------------------C
Confidence 456899999999999999985 44 3 48888 6655444 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
.. +...+ .+.|.++.....|-.+|+|+.-.+..+|+.+-+
T Consensus 172 ~~--~~~~l-------~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l 211 (226)
T cd03270 172 PR--DNDRL-------IETLKRLRDLGNTVLVVEHDEDTIRAADHVIDI 211 (226)
T ss_pred HH--HHHHH-------HHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEe
Confidence 33 44555 666777766666767779999877666665443
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.46 E-value=0.25 Score=61.05 Aligned_cols=60 Identities=7% Similarity=0.034 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 402 RLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 402 QYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
+|..+.++|.+-.-+.+-...+...|..-...||+.-.+-=-.-.+.||..+.++|+..+
T Consensus 1095 ~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~~~ 1154 (1311)
T TIGR00606 1095 QFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTY 1154 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555555555555555555555555555543333333335677888888887754
No 36
>PRK00064 recF recombination protein F; Reviewed
Probab=95.39 E-value=0.22 Score=53.52 Aligned_cols=158 Identities=10% Similarity=0.016 Sum_probs=84.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhh
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYL 470 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L 470 (926)
.+.+.-..++.+|..+.+++..+.+.... ...+...+.+.++-.+-...=..+++.++..|.++|..|.... ..+-|
T Consensus 142 ~~~~~y~~~~~~y~k~lkqrn~lLk~~~~--~~l~~w~~~l~~~g~~I~~~R~~~~~~L~~~~~~~~~~l~~~~-~~~~l 218 (361)
T PRK00064 142 QIEPVYASALSQYERALKQRNALLKQADY--AWLDVWDEQLAELGAAIAAARLEYLERLAPLAAKTHQEISPEF-ELASL 218 (361)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceEE
Confidence 33344467888888888888887763111 1244444555555444444455677888889999999874211 01100
Q ss_pred hh-cCCCCcccc----hhh----hhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHH
Q psy834 471 IV-SGWPKKKEN----LVI----VVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGER 541 (926)
Q Consensus 471 ~l-SgwP~GkGN----LvI----v~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEK 541 (926)
.. ++|+..... +.- ....++- -|.. ..-|.-.-+.|.+ .| ......+|+|||
T Consensus 219 ~y~~~~~~~~~~~~~~~~~~l~~~~~~d~~--------~g~T-------~~GpHrdDl~~~~--~g--~~~~~~~S~Gq~ 279 (361)
T PRK00064 219 SYQSSVEDDAEKIEEDLLEALAKNRERDRA--------RGRT-------LVGPHRDDLRFRI--NG--LPAADFGSTGQQ 279 (361)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHhHHHHHh--------cCCC-------CCCcchhceEEEE--CC--CCHHHhCChHHH
Confidence 00 222200000 000 0000000 0000 0122222334444 23 356779999999
Q ss_pred HHHHHHHHHHHhc-----cccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 542 TLAALAMIFTIWK-----LVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 542 SLVALALIFAIQK-----cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
.+++||+.+|-.. +.. .||..+ ||+-+=+
T Consensus 280 ~~~~lal~la~~~~~~~~~~~-----~~ilLl----------Dd~~s~L 313 (361)
T PRK00064 280 KLLLLALKLAEAELLKEETGE-----APILLL----------DDVASEL 313 (361)
T ss_pred HHHHHHHHHHHHHHHHHhhCC-----CCEEEE----------ccchhhh
Confidence 9999999998532 344 599999 8877777
No 37
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.21 E-value=0.018 Score=55.58 Aligned_cols=75 Identities=19% Similarity=0.031 Sum_probs=54.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 129 ~~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 165 (213)
T cd03235 129 QIGELSGGQQQRVLLARALVQ---DP------DLLLL----------DEPFAGV------------------------DP 165 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 356899999999999998875 66 88888 7765555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
. +...+ .+.|.+++....|=.+|+|++-...+ .|+.+-
T Consensus 166 ~--~~~~l-------~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 166 K--TQEDI-------YELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred H--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 4 45555 67788887654565566999877766 466553
No 38
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.16 E-value=0.014 Score=64.05 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=56.5
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||++.|||=.|+- +| ||+.+ ||-.+-+ |..
T Consensus 468 ~~LSgGqrQRiaLARall~---~~------~illL----------DEpts~L------------------------D~~- 503 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLK---DA------PILIL----------DEATSAL------------------------DNE- 503 (571)
T ss_pred CcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CHH-
Confidence 4799999999999976652 44 89999 8877666 555
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|-.++ .+.|.++.. ..|..+|||++.....+|+.+-+
T Consensus 504 -~~~~i-------~~~L~~~~~-~~tiIiitH~~~~~~~~D~ii~l 540 (571)
T TIGR02203 504 -SERLV-------QAALERLMQ-GRTTLVIAHRLSTIEKADRIVVM 540 (571)
T ss_pred -HHHHH-------HHHHHHHhC-CCEEEEEehhhHHHHhCCEEEEE
Confidence 55556 555666643 47888889999999999998766
No 39
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.13 E-value=0.016 Score=56.02 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=53.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| +|..+ ||--+-+ |..
T Consensus 140 ~~LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~~- 175 (221)
T TIGR02211 140 SELSGGERQRVAIARALVN---QP------SLVLA----------DEPTGNL------------------------DNN- 175 (221)
T ss_pred hhCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCCCcC------------------------CHH-
Confidence 5899999999999999986 66 78888 7766655 544
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLT 658 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~ 658 (926)
+...+ .+.|.++... ..|=.+|+|++-....+|+.+-
T Consensus 176 -~~~~l-------~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~ 213 (221)
T TIGR02211 176 -NAKII-------FDLMLELNRELNTSFLVVTHDLELAKKLDRVLE 213 (221)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEE
Confidence 55566 5667777654 4455566999887776766443
No 40
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.89 E-value=0.028 Score=55.40 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=60.6
Q ss_pred ccccCchhHHHHHHHHHHHHHh--ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIW--KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQ--KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+..||||||.+++|||.+||- .+.. .++..+ ||..+.+
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~-----p~illl----------DEP~~~L------------------------ 152 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSN-----CGILAL----------DEPTTNL------------------------ 152 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccC-----CCEEEE----------cCCcccc------------------------
Confidence 5689999999999887655543 2334 588888 8877777
Q ss_pred CCCCCchh-hhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcceeeec
Q psy834 610 SRANPNLS-RRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTIQSAE 663 (926)
Q Consensus 610 ~~a~~N~~-R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v~~aE 663 (926)
|.. +.. ++ +..|.++... .-|=++|+|++......|+.+.+...-
T Consensus 153 D~~--~~~~~l-------~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 153 DEE--NIEESL-------AEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred CHH--HHHHHH-------HHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 544 556 66 7778888765 345566699998888888877665443
No 41
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.76 E-value=0.025 Score=54.48 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=53.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||..++||..|+. +| ++..+ ||-.+-+ |-.
T Consensus 136 ~~LS~G~~qrl~la~al~~---~p------~lllL----------DEPt~~L------------------------D~~- 171 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVN---SP------PLLLA----------DEPTGNL------------------------DPD- 171 (214)
T ss_pred hhCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence 5899999999999999885 66 88888 7765555 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ .+.|.++.....|=.+|+|++-.... +|+.+-
T Consensus 172 -~~~~l-------~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~ 209 (214)
T TIGR02673 172 -LSERI-------LDLLKRLNKRGTTVIVATHDLSLVDRVAHRVII 209 (214)
T ss_pred -HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 44555 66788876655666666999887766 466543
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.71 E-value=0.048 Score=61.82 Aligned_cols=71 Identities=6% Similarity=0.110 Sum_probs=61.6
Q ss_pred ChhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQ-RLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY 457 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIE-QYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF 457 (926)
.+..+..+|. + .++|+.|++ +|+++.++++.|..+.++|..++..++.+|.. .++|..+|+.|+.+|.+--
T Consensus 456 ~i~~l~~~L~-~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f~~Ae 527 (569)
T PRK04778 456 EIEALAEELE-E-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYRSDNEEVAEALNEAE 527 (569)
T ss_pred HHHHHHHHhc-c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHHHHHHHHHH
Confidence 3455555555 4 556699999 99999999999999999999999999999998 9999999999999998743
No 43
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.58 E-value=0.019 Score=58.65 Aligned_cols=76 Identities=17% Similarity=0.058 Sum_probs=56.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+.+ |.
T Consensus 136 ~~~~LS~G~~qrv~laral~~---~p------~illl----------DEPts~L------------------------D~ 172 (255)
T cd03236 136 NIDQLSGGELQRVAIAAALAR---DA------DFYFF----------DEPSSYL------------------------DI 172 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCCCCC------------------------CH
Confidence 446899999999999999986 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ +.+|.++.....|-.+|+|..-...+ +|+.+-+
T Consensus 173 ~--~~~~l-------~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l 212 (255)
T cd03236 173 K--QRLNA-------ARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL 212 (255)
T ss_pred H--HHHHH-------HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 4 55566 78888887765666666998876654 6766544
No 44
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.48 E-value=0.038 Score=53.17 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=51.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 132 ~~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 168 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAM---DP------DILLL----------DEPTAGL------------------------DPA 168 (211)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 46899999999999998875 66 78888 7755555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ .+.|.++....-|=.+++|++..... +|+.+-
T Consensus 169 --~~~~~-------~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 206 (211)
T cd03225 169 --GRREL-------LELLKKLKAEGKTIIIVTHDLDLLLELADRVIV 206 (211)
T ss_pred --HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 44555 56677777654454555999887766 566543
No 45
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.47 E-value=0.036 Score=57.75 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=55.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..++-....| .++.+ ||-.+-+ |
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p------~lllL----------DEPtsgL------------------------D 204 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGK------TLYIL----------DEPTTGL------------------------H 204 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCC------cEEEE----------ECCCCCC------------------------C
Confidence 345689999999999999887532223 57777 6654444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~ 657 (926)
.. +...+ .+.|.++.....|-.+|+|++-.....|+.+
T Consensus 205 ~~--~~~~l-------~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii 242 (261)
T cd03271 205 FH--DVKKL-------LEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 (261)
T ss_pred HH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 34 45556 5677888777788888899998777666543
No 46
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.41 E-value=0.038 Score=54.63 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=55.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..|+. +| ++..+ ||-.+-+ |-
T Consensus 141 ~~~~LS~Gq~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D~ 177 (250)
T PRK11264 141 YPRRLSGGQQQRVAIARALAM---RP------EVILF----------DEPTSAL------------------------DP 177 (250)
T ss_pred ChhhCChHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 457999999999999999985 66 78888 7776666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.....|=.+++|+.-.... +|+.+-+
T Consensus 178 ~--~~~~l-------~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l 217 (250)
T PRK11264 178 E--LVGEV-------LNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM 217 (250)
T ss_pred H--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4 55556 66778887655565566999877655 5766544
No 47
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.034 Score=53.70 Aligned_cols=75 Identities=17% Similarity=0.081 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| ++..+ ||-.+-+ |..
T Consensus 128 ~~~LSgG~~qrl~la~al~~---~p------~~lll----------DEPt~~L------------------------D~~ 164 (213)
T cd03259 128 PHELSGGQQQRVALARALAR---EP------SLLLL----------DEPLSAL------------------------DAK 164 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 35899999999999998885 66 88888 7766666 544
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+++|++-...+ .|+.+-+
T Consensus 165 --~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 204 (213)
T cd03259 165 --LREEL-------REELKELQRELGITTIYVTHDQEEALALADRIAVM 204 (213)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE
Confidence 55555 6777787654 4455555998875544 5655443
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.038 Score=58.63 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=62.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||-.++. +| +|..+ ||..+-+ |-
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~---~p------~IlLL----------DEPts~L------------------------D~ 258 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIAL---EP------EVLLM----------DEPTSAL------------------------DP 258 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456999999999999988865 66 78888 7766666 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce---eeecCCCCCc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI---QSAEQGSPNT 669 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v---~~aE~G~~~~ 669 (926)
. +...+ ++.|.++.. .-|..+|+|+.-+... .|+.+-+ ...|.|.|..
T Consensus 259 ~--~~~~i-------~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 259 I--ATAKI-------EELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred H--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 3 44555 667777776 3788888999999877 7887655 3456666543
No 49
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.39 E-value=0.035 Score=53.48 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 124 ~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~~ 160 (208)
T cd03268 124 VKGFSLGMKQRLGIALALLG---NP------DLLIL----------DEPTNGL------------------------DPD 160 (208)
T ss_pred HhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCcccC------------------------CHH
Confidence 56899999999999999886 56 78888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ ...|.++.....|=.+|+|++-.... +|+.+-+
T Consensus 161 --~~~~l-------~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 199 (208)
T cd03268 161 --GIKEL-------RELILSLRDQGITVLISSHLLSEIQKVADRIGII 199 (208)
T ss_pred --HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 44555 56777877644555555999876654 5665544
No 50
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=94.35 E-value=0.042 Score=54.06 Aligned_cols=83 Identities=14% Similarity=0.249 Sum_probs=58.6
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNP 606 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~ 606 (926)
....+.+..||||||.+++||..+|++.+.. .+|+.+ ||..+=+
T Consensus 101 ~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~-----p~illl----------DEP~~gl--------------------- 144 (198)
T cd03276 101 KAAVRDVKTLSGGERSFSTVCLLLSLWEVME-----SPFRCL----------DEFDVFM--------------------- 144 (198)
T ss_pred cccCCcccccChhHHHHHHHHHHHHHhcccC-----CCEEEe----------cCccccc---------------------
Confidence 3456788999999999999999999887666 699999 8866666
Q ss_pred CCCCCCCCchhhhhhcccCCCCChhhhccC-CC--ceeEeecChhhHHhhhhhc
Q psy834 607 NPNSRANPNLSRRAQANNSAQNPLPEVSSS-PN--TRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 607 ~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~-~~--tr~~v~~~~~t~sr~~~~~ 657 (926)
|.. +...+ .+.|.++... .. |=++++|+.....++|+..
T Consensus 145 ---D~~--~~~~~-------~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~ 186 (198)
T cd03276 145 ---DMV--NRKIS-------TDLLVKEAKKQPGRQFIFITPQDISGLASSDDVK 186 (198)
T ss_pred ---CHH--HHHHH-------HHHHHHHHhcCCCcEEEEEECCccccccccccee
Confidence 444 45555 4456666543 12 4444488887777776443
No 51
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.25 E-value=0.034 Score=54.72 Aligned_cols=73 Identities=22% Similarity=0.132 Sum_probs=54.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
...||||||.+++||..|+. +| +|..+ ||-.+-+ |..
T Consensus 143 ~~~LSgG~~qrl~la~al~~---~p------~lllL----------DEPt~~L------------------------D~~ 179 (233)
T PRK11629 143 PSELSGGERQRVAIARALVN---NP------RLVLA----------DEPTGNL------------------------DAR 179 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CHH
Confidence 35799999999999998886 66 88999 8866656 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~ 657 (926)
+...+ .+.|.++... .-|=.+|+|++-...++++.+
T Consensus 180 --~~~~l-------~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~ 216 (233)
T PRK11629 180 --NADSI-------FQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216 (233)
T ss_pred --HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEE
Confidence 44555 6678887653 456566699998888887543
No 52
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.037 Score=53.32 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=52.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 125 ~~~~LS~G~~qrl~la~al~~---~p------~~lll----------DEP~~~L------------------------D~ 161 (210)
T cd03269 125 RVEELSKGNQQKVQFIAAVIH---DP------ELLIL----------DEPFSGL------------------------DP 161 (210)
T ss_pred cHhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence 346899999999999999887 56 78888 7765555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.....|=.+++|.+..... .|+.+-+
T Consensus 162 ~--~~~~~-------~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 201 (210)
T cd03269 162 V--NVELL-------KDVIRELARAGKTVILSTHQMELVEELCDRVLLL 201 (210)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEE
Confidence 4 44455 55677776554455555999876654 5665443
No 53
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.22 E-value=0.037 Score=53.52 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=51.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 138 ~~~LS~G~~qrv~la~al~~---~p------~lllL----------DEP~~~L------------------------D~~ 174 (218)
T cd03255 138 PSELSGGQQQRVAIARALAN---DP------KIILA----------DEPTGNL------------------------DSE 174 (218)
T ss_pred hhhcCHHHHHHHHHHHHHcc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 35899999999999988876 66 78888 7755555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~ 657 (926)
+...+ .+.|.++..+ .-|=.+|+|++-...-+|+.+
T Consensus 175 --~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~ 211 (218)
T cd03255 175 --TGKEV-------MELLRELNKEAGTTIVVVTHDPELAEYADRII 211 (218)
T ss_pred --HHHHH-------HHHHHHHHHhcCCeEEEEECCHHHHhhhcEEE
Confidence 55556 6678888763 445555599886655555543
No 54
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.19 E-value=0.04 Score=53.31 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=51.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 137 ~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~- 172 (216)
T TIGR00960 137 MQLSGGEQQRVAIARAIVH---KP------PLLLA----------DEPTGNL------------------------DPE- 172 (216)
T ss_pred hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCcC------------------------CHH-
Confidence 5899999999999999987 66 78888 7755555 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
+...+ .+.|.++.....|=.+|+|++-.... .|+.+
T Consensus 173 -~~~~l-------~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~ 209 (216)
T TIGR00960 173 -LSRDI-------MRLFEEFNRRGTTVLVATHDINLVETYRHRTL 209 (216)
T ss_pred -HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 45555 56677776554454555999877665 36544
No 55
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.18 E-value=0.044 Score=54.04 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=55.0
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 135 ~~LS~G~~qrv~la~al~~---~p------~llll----------DEP~~~L------------------------D~~- 170 (240)
T PRK09493 135 SELSGGQQQRVAIARALAV---KP------KLMLF----------DEPTSAL------------------------DPE- 170 (240)
T ss_pred hhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH-
Confidence 6899999999999999985 66 78888 7776666 555
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++.....|=.+++|+.-...+ +|+.+-+
T Consensus 171 -~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 171 -LRHEV-------LKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred -HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 56666 67788887654555555999887655 5665544
No 56
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.16 E-value=0.044 Score=53.34 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 147 ~~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 183 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFIA---DY------PILLL----------DEPTASL------------------------DAA 183 (224)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 56899999999999998874 56 68888 7765555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhccee
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTIQ 660 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v~ 660 (926)
+...+ .+.|.++....-|=.+|+|++.... -+|+.+.+|
T Consensus 184 --~~~~l-------~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 184 --NRQVV-------VELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred --HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 45555 6778888665456556699976554 467666554
No 57
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.14 E-value=0.038 Score=53.45 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=54.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||..+-+ |.
T Consensus 133 ~~~~LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~ 169 (218)
T cd03266 133 RVGGFSTGMRQKVAIARALVH---DP------PVLLL----------DEPTTGL------------------------DV 169 (218)
T ss_pred hhhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCcCC------------------------CH
Confidence 456899999999999999886 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.....|=.+|+|++-.... .|+.+-+
T Consensus 170 ~--~~~~l-------~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l 209 (218)
T cd03266 170 M--ATRAL-------REFIRQLRALGKCILFSTHIMQEVERLCDRVVVL 209 (218)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4 55556 66788876655566666999876543 5665543
No 58
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.039 Score=54.24 Aligned_cols=75 Identities=16% Similarity=0.056 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||-.+-+ |-.
T Consensus 134 ~~~LSgG~~qrv~ia~al~~---~p------~llll----------DEPt~~L------------------------D~~ 170 (235)
T cd03261 134 PAELSGGMKKRVALARALAL---DP------ELLLY----------DEPTAGL------------------------DPI 170 (235)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CHH
Confidence 35899999999999999886 66 88888 7755555 443
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... ..|=.+|+|++-.... +|+.+-+
T Consensus 171 --~~~~l-------~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 171 --ASGVI-------DDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred --HHHHH-------HHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE
Confidence 45555 5678888764 4455555999876544 6766544
No 59
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.11 E-value=0.034 Score=53.78 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=51.6
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |-.
T Consensus 127 ~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~ 163 (204)
T PRK13538 127 VRQLSAGQQRRVALARLWLT---RA------PLWIL----------DEPFTAI------------------------DKQ 163 (204)
T ss_pred hhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence 56899999999999998887 66 78888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV 653 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~ 653 (926)
+...+ ...|.++.....|=.+|+|++....+.
T Consensus 164 --~~~~l-------~~~l~~~~~~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 164 --GVARL-------EALLAQHAEQGGMVILTTHQDLPVASD 195 (204)
T ss_pred --HHHHH-------HHHHHHHHHCCCEEEEEecChhhhccC
Confidence 55666 677888766555655569998877654
No 60
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.10 E-value=0.048 Score=60.48 Aligned_cols=72 Identities=17% Similarity=0.030 Sum_probs=53.3
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||+++|||=.|.= +| ||..+ ||--+-+ |..
T Consensus 485 ~LSGGQrQRialARAll~---~~------~IliL----------DE~TSaL------------------------D~~-- 519 (588)
T PRK11174 485 GLSVGQAQRLALARALLQ---PC------QLLLL----------DEPTASL------------------------DAH-- 519 (588)
T ss_pred CCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH--
Confidence 699999999999864432 44 89999 8876666 544
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|-.+. .+.|.++. ...|..+|+|++-+...+|+.+-+
T Consensus 520 te~~i-------~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 520 SEQLV-------MQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred HHHHH-------HHHHHHHh-CCCEEEEEecChHHHHhCCEEEEE
Confidence 44444 34455554 347888889999999999998766
No 61
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.05 E-value=0.042 Score=54.08 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=53.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||-.+-+ |-.
T Consensus 135 ~~~LS~G~~qrl~la~al~~---~p------~illl----------DEPt~~L------------------------D~~ 171 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMS---QP------RLLLL----------DEPSLGL------------------------API 171 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------cCccccC------------------------CHH
Confidence 34799999999999999987 66 88888 7766666 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChh-hHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT-TRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~-t~sr~~~~~~v 659 (926)
+...+ ...|.++.....|=.+++|++- ...-.|+.+-+
T Consensus 172 --~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (237)
T PRK11614 172 --IIQQI-------FDTIEQLREQGMTIFLVEQNANQALKLADRGYVL 210 (237)
T ss_pred --HHHHH-------HHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEE
Confidence 45555 5567777766667666699976 45556776544
No 62
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.01 E-value=0.044 Score=52.41 Aligned_cols=71 Identities=25% Similarity=0.229 Sum_probs=51.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||.+++||..++. +| ++..+ ||-.+-+ |.+
T Consensus 132 ~~~lS~G~~qr~~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 168 (206)
T TIGR03608 132 IYELSGGEQQRVALARAILK---DP------PLILA----------DEPTGSL------------------------DPK 168 (206)
T ss_pred hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcCCC------------------------CHH
Confidence 46799999999999998886 66 88888 8877766 655
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhh
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQS 655 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~ 655 (926)
+...+ ...|.++....-|-.+++|++-....+|+
T Consensus 169 --~~~~l-------~~~l~~~~~~~~tii~~sh~~~~~~~~d~ 202 (206)
T TIGR03608 169 --NRDEV-------LDLLLELNDEGKTIIIVTHDPEVAKQADR 202 (206)
T ss_pred --HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHhhcCE
Confidence 66666 67788877654455566998865544443
No 63
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.01 E-value=0.04 Score=55.76 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=55.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||..+-+ |..
T Consensus 147 ~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~~ 183 (267)
T PRK15112 147 PHMLAPGQKQRLGLARALIL---RP------KVIIA----------DEALASL------------------------DMS 183 (267)
T ss_pred chhcCHHHHHHHHHHHHHHh---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 45899999999999999986 56 88888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|++-...+ +|+.+-+
T Consensus 184 --~~~~l-------~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 184 --MRSQL-------INLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred --HHHHH-------HHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 55566 7778888764 4455555999877766 5766554
No 64
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.93 E-value=0.049 Score=53.75 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=53.9
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| +|..+ ||..+-+ |-.
T Consensus 140 ~~LS~G~~qrv~laral~~---~p------~llil----------DEPt~~L------------------------D~~- 175 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMM---EP------QVLLF----------DEPTAAL------------------------DPE- 175 (242)
T ss_pred hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCcC------------------------CHH-
Confidence 5899999999999998887 66 78888 7766666 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ ...|.++.....|=.+|+|++-.... +|+.+-+
T Consensus 176 -~~~~l-------~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 214 (242)
T PRK11124 176 -ITAQI-------VSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214 (242)
T ss_pred -HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 45555 55677776555554555999887655 6766554
No 65
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.92 E-value=0.053 Score=52.26 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=51.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||-.+-+ |..
T Consensus 124 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 160 (205)
T cd03226 124 PLSLSGGQKQRLAIAAALLS---GK------DLLIF----------DEPTSGL------------------------DYK 160 (205)
T ss_pred chhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCccC------------------------CHH
Confidence 35899999999999998886 66 78888 7755555 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ .+.|.++.....|=.+++|++-...+ +|+.+-
T Consensus 161 --~~~~l-------~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 198 (205)
T cd03226 161 --NMERV-------GELIRELAAQGKAVIVITHDYEFLAKVCDRVLL 198 (205)
T ss_pred --HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 44455 56777876655565666999876654 566543
No 66
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.048 Score=56.15 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=53.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.++|||..|+. +| ++..+ ||..+-+ |.
T Consensus 141 ~~~~LSgGqkqrvaiA~aL~~---~p------~illL----------DEPt~gL------------------------D~ 177 (288)
T PRK13643 141 SPFELSGGQMRRVAIAGILAM---EP------EVLVL----------DEPTAGL------------------------DP 177 (288)
T ss_pred CcccCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCccCC------------------------CH
Confidence 456899999999999999988 77 78888 7766655 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ -+.|.++....-|=.+|+|+.--..+ .|+.+-+
T Consensus 178 ~--~~~~l-------~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l 217 (288)
T PRK13643 178 K--ARIEM-------MQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL 217 (288)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 3 33344 45667776655576677999876654 6766443
No 67
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.86 E-value=0.053 Score=52.90 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 139 ~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~~ 175 (227)
T cd03260 139 ALGLSGGQQQRLCLARALAN---EP------EVLLL----------DEPTSAL------------------------DPI 175 (227)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence 46899999999999988886 66 88999 7766666 544
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .|=.+++|++-.... .|+.+-+
T Consensus 176 --~~~~l-------~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l 213 (227)
T cd03260 176 --STAKI-------EELIAELKKE-YTIVIVTHNMQQAARVADRTAFL 213 (227)
T ss_pred --HHHHH-------HHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEE
Confidence 45555 6778888775 554555999876543 6766544
No 68
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.05 Score=53.27 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=54.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 138 ~~~LS~G~~qrv~la~al~~---~p------~lllL----------DEP~~~L------------------------D~~ 174 (233)
T cd03258 138 PAQLSGGQKQRVGIARALAN---NP------KVLLC----------DEATSAL------------------------DPE 174 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCCCcC------------------------CHH
Confidence 36899999999999998875 66 78888 7755555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+++|++-...+ +|+.+-+
T Consensus 175 --~~~~l-------~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 214 (233)
T cd03258 175 --TTQSI-------LALLRDINRELGLTIVLITHEMEVVKRICDRVAVM 214 (233)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 45555 6678888765 4455555999877665 5776554
No 69
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.76 E-value=0.065 Score=52.62 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=52.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..|+. +| .+..+ ||-.+-+ |.
T Consensus 135 ~~~~LSgG~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~ 171 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIH---NP------RILIF----------DEATSAL------------------------DY 171 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999999885 67 67888 6655555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +...+ -+.|.++.. .-|=.+++|++-.....|+.+-+
T Consensus 172 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~d~v~~l 209 (237)
T cd03252 172 E--SEHAI-------MRNMHDICA-GRTVIIIAHRLSTVKNADRIIVM 209 (237)
T ss_pred H--HHHHH-------HHHHHHhcC-CCEEEEEeCCHHHHHhCCEEEEE
Confidence 4 44555 455666653 34544459999888777765544
No 70
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.74 E-value=0.084 Score=50.98 Aligned_cols=75 Identities=20% Similarity=0.100 Sum_probs=53.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..|||||+.+++||..|+. +| +|..+ ||-.+.+ |.
T Consensus 122 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~ 158 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALLK---RP------RVLVL----------DEATASI------------------------DY 158 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCcccC------------------------CH
Confidence 467899999999999999975 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. ...++ .++|.++.. .-|-.+++|++-.....|+.+-+
T Consensus 159 ~--~~~~l-------~~~l~~~~~-~~tiii~th~~~~~~~~d~v~~l 196 (207)
T cd03369 159 A--TDALI-------QKTIREEFT-NSTILTIAHRLRTIIDYDKILVM 196 (207)
T ss_pred H--HHHHH-------HHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEE
Confidence 3 44455 456766643 34555569998776667777655
No 71
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.05 Score=53.25 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=54.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..++. +| +|..+ ||-.+-+ |.
T Consensus 141 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 177 (241)
T cd03256 141 RADQLSGGQQQRVAIARALMQ---QP------KLILA----------DEPVASL------------------------DP 177 (241)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence 456899999999999998886 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
. +...+ .+.|.++... ..|=.+|+|++-... -+|+.+-+
T Consensus 178 ~--~~~~l-------~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 178 A--SSRQV-------MDLLKRINREEGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 55555 6678887754 445455599987766 46666544
No 72
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.72 E-value=0.065 Score=52.32 Aligned_cols=76 Identities=13% Similarity=0.036 Sum_probs=52.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 130 ~~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 166 (232)
T cd03218 130 KASSLSGGERRRVEIARALAT---NP------KFLLL----------DEPFAGV------------------------DP 166 (232)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CH
Confidence 346899999999999999987 66 78888 6655444 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ..+|.++.....|=.+++|++-...+ +|+.+-+
T Consensus 167 ~--~~~~~-------~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 206 (232)
T cd03218 167 I--AVQDI-------QKIIKILKDRGIGVLITDHNVRETLSITDRAYII 206 (232)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 44555 56788887655565555999865444 5665444
No 73
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.72 E-value=0.062 Score=51.71 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=51.4
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| +|..+ ||-.+-+ |..
T Consensus 135 ~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~- 170 (214)
T cd03292 135 AELSGGEQQRVAIARAIVN---SP------TILIA----------DEPTGNL------------------------DPD- 170 (214)
T ss_pred hhcCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCcC------------------------CHH-
Confidence 4899999999999999886 66 78888 7755555 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ .+.|.++....-|=.+|+|++-.... +|+.+-
T Consensus 171 -~~~~~-------~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~ 208 (214)
T cd03292 171 -TTWEI-------MNLLKKINKAGTTVVVATHAKELVDTTRHRVIA 208 (214)
T ss_pred -HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 45555 66777876554555555999876655 466543
No 74
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.72 E-value=0.063 Score=53.72 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=56.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||-.+-+ |.
T Consensus 149 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 185 (257)
T PRK10619 149 YPVHLSGGQQQRVSIARALAM---EP------EVLLF----------DEPTSAL------------------------DP 185 (257)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999998887 66 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=++|+|++-.... +|+.+-+
T Consensus 186 ~--~~~~l-------~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l 225 (257)
T PRK10619 186 E--LVGEV-------LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 225 (257)
T ss_pred H--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4 55555 56778887655566666999987776 5777555
No 75
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.72 E-value=0.04 Score=53.19 Aligned_cols=69 Identities=13% Similarity=0.039 Sum_probs=51.8
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 126 ~~LS~G~~~rv~laral~~---~p------~~lil----------DEP~~~L------------------------D~~- 161 (200)
T PRK13540 126 GLLSSGQKRQVALLRLWMS---KA------KLWLL----------DEPLVAL------------------------DEL- 161 (200)
T ss_pred hhcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccc------------------------CHH-
Confidence 4799999999999999987 66 78888 7766666 555
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhh
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQ 654 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~ 654 (926)
+...+ ++.|.++.....|=.+++|.+..-..+|
T Consensus 162 -~~~~l-------~~~l~~~~~~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 162 -SLLTI-------ITKIQEHRAKGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred -HHHHH-------HHHHHHHHHcCCEEEEEeCCchhccccc
Confidence 56666 7778887665556455589887766655
No 76
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.68 E-value=0.048 Score=52.78 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=50.3
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 123 ~~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 159 (201)
T cd03231 123 VAQLSAGQQRRVALARLLLS---GR------PLWIL----------DEPTTAL------------------------DKA 159 (201)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CHH
Confidence 46899999999999999886 66 78888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR 652 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr 652 (926)
+...+ .+.|.++.....|=.+|+|++..-..
T Consensus 160 --~~~~l-------~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 160 --GVARF-------AEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred --HHHHH-------HHHHHHHHhCCCEEEEEecCchhhhh
Confidence 55556 67788877655665556998875443
No 77
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.67 E-value=0.056 Score=54.72 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=53.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| +|..+ ||-.+-+ |-
T Consensus 133 ~~~~LSgG~~qrl~laraL~~---~p------~lllL----------DEPt~~L------------------------D~ 169 (271)
T PRK13638 133 PIQCLSHGQKKRVAIAGALVL---QA------RYLLL----------DEPTAGL------------------------DP 169 (271)
T ss_pred CchhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 356899999999999999886 66 88888 7765555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus 170 ~--~~~~l-------~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 170 A--GRTQM-------IAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 44555 66788877544454555898876654 6766554
No 78
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.66 E-value=0.063 Score=51.14 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=56.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 93 ~~~~~LS~G~~qrl~laral~~---~p------~llll----------DEP~~~L------------------------D 129 (180)
T cd03214 93 RPFNELSGGERQRVLLARALAQ---EP------PILLL----------DEPTSHL------------------------D 129 (180)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------C
Confidence 4578999999999999988887 66 78888 7766666 5
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
.. +...+ .+.|.++... ..|=.+++|++.... -.|+.+-+
T Consensus 130 ~~--~~~~~-------~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 171 (180)
T cd03214 130 IA--HQIEL-------LELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171 (180)
T ss_pred HH--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44 56666 6778888765 446666699988754 45766543
No 79
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.65 E-value=0.058 Score=51.86 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=52.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| +|..+ ||-.+-+ |-.
T Consensus 133 ~~~LS~G~~qrv~la~al~~---~p------~llll----------DEP~~~L------------------------D~~ 169 (213)
T cd03262 133 PAQLSGGQQQRVAIARALAM---NP------KVMLF----------DEPTSAL------------------------DPE 169 (213)
T ss_pred ccccCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH
Confidence 36899999999999998887 66 78888 7765555 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ ...|.++.....|=.+++|++..... +|+.+-
T Consensus 170 --~~~~l-------~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~ 207 (213)
T cd03262 170 --LVGEV-------LDVMKDLAEEGMTMVVVTHEMGFAREVADRVIF 207 (213)
T ss_pred --HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 45555 66788887644454444999877655 565543
No 80
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.63 E-value=0.056 Score=52.32 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||-.+-+ |..
T Consensus 143 ~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~~ 179 (228)
T cd03257 143 PHELSGGQRQRVAIARALAL---NP------KLLIA----------DEPTSAL------------------------DVS 179 (228)
T ss_pred chhcCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCCCCC------------------------CHH
Confidence 35899999999999998876 66 88888 7755555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.+++.. ..|=.+++|++..+.. +|+.+-+
T Consensus 180 --~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 219 (228)
T cd03257 180 --VQAQI-------LDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM 219 (228)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 55666 6778888765 4565666999877663 6766543
No 81
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.056 Score=52.63 Aligned_cols=73 Identities=10% Similarity=-0.029 Sum_probs=52.4
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||--+-+ |..
T Consensus 129 ~~~LS~G~~qr~~la~al~~---~p------~llll----------DEPt~~L------------------------D~~ 165 (220)
T cd03265 129 VKTYSGGMRRRLEIARSLVH---RP------EVLFL----------DEPTIGL------------------------DPQ 165 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCccCC------------------------CHH
Confidence 46899999999999998886 66 78888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
+...+ .+.|.++... ..|=.+++|+.-.... +|+.+
T Consensus 166 --~~~~l-------~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~ 203 (220)
T cd03265 166 --TRAHV-------WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVA 203 (220)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 45555 6778888765 3454555998876554 56654
No 82
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.59 E-value=0.061 Score=54.57 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=55.8
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| +|..+ ||-.+.+ |
T Consensus 141 ~~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D 177 (280)
T PRK13649 141 KNPFELSGGQMRRVAIAGILAM---EP------KILVL----------DEPTAGL------------------------D 177 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------C
Confidence 3467899999999999999887 66 78888 8877766 5
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ ...|.++....-|=.+|+|++-.... .|+.+-+
T Consensus 178 ~~--~~~~l-------~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 218 (280)
T PRK13649 178 PK--GRKEL-------MTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVL 218 (280)
T ss_pred HH--HHHHH-------HHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEE
Confidence 44 55555 66777776554555566999876654 5665544
No 83
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.58 E-value=0.065 Score=53.19 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=54.1
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |
T Consensus 140 ~~~~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D 176 (247)
T TIGR00972 140 DSALGLSGGQQQRLCIARALAV---EP------EVLLL----------DEPTSAL------------------------D 176 (247)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------C
Confidence 3456899999999999999985 66 77888 6655555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.++... .|-.+|+|++-...+ +|+.+-+
T Consensus 177 ~~--~~~~l-------~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~~l 216 (247)
T TIGR00972 177 PI--ATGKI-------EELIQELKKK-YTIVIVTHNMQQAARISDRTAFF 216 (247)
T ss_pred HH--HHHHH-------HHHHHHHHhc-CeEEEEecCHHHHHHhCCEEEEE
Confidence 33 44455 5667777664 566777999987655 6776544
No 84
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.57 E-value=0.067 Score=52.70 Aligned_cols=71 Identities=11% Similarity=0.018 Sum_probs=53.0
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||.+++||..++. +| +|..+ ||-.+-+ |..
T Consensus 145 ~LS~G~~qrv~laral~~---~p------~illL----------DEPt~~L------------------------D~~-- 179 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVL---EP------ELCIL----------DESDSGL------------------------DID-- 179 (248)
T ss_pred CCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CHH--
Confidence 799999999999998887 56 88999 8876666 555
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhc
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSL 657 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~ 657 (926)
....+ .+.|.++.....|=.+++|++..... .|+.+
T Consensus 180 ~~~~l-------~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~ 217 (248)
T PRK09580 180 ALKIV-------ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH 217 (248)
T ss_pred HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE
Confidence 55666 66777887655565666999877666 36543
No 85
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.57 E-value=0.028 Score=57.92 Aligned_cols=77 Identities=13% Similarity=0.026 Sum_probs=52.4
Q ss_pred cccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 529 SYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNP 608 (926)
Q Consensus 529 r~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~ 608 (926)
..+.+..||||||.+||||=++|+ +| =|..+ ||=-+.+
T Consensus 132 ~~r~p~~LSGGqkqRvaIA~vLa~---~P------~iliL----------DEPta~L----------------------- 169 (235)
T COG1122 132 LDRPPFNLSGGQKQRVAIAGVLAM---GP------EILLL----------DEPTAGL----------------------- 169 (235)
T ss_pred ccCCccccCCcceeeHHhhHHHHc---CC------CEEEE----------cCCCCCC-----------------------
Confidence 457889999999999999999999 46 45666 5544444
Q ss_pred CCCCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 609 NSRANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 609 ~~~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
|.. +.... -.+|.++... .-|-.+|||.--...- .|+.+
T Consensus 170 -D~~--~~~~l-------~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~ 210 (235)
T COG1122 170 -DPK--GRREL-------LELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210 (235)
T ss_pred -CHH--HHHHH-------HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEE
Confidence 333 33333 5567777776 3577777998655544 55543
No 86
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.56 E-value=0.048 Score=51.94 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=46.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||-.+-+ |-.
T Consensus 125 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 161 (190)
T TIGR01166 125 THCLSGGEKKRVAIAGAVAM---RP------DVLLL----------DEPTAGL------------------------DPA 161 (190)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 36899999999999998875 66 78888 7766666 544
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecCh
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP 647 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~ 647 (926)
+..++ .+.|.++.....|=.+|+|++
T Consensus 162 --~~~~~-------~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 162 --GREQM-------LAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred --HHHHH-------HHHHHHHHHcCCEEEEEeecc
Confidence 56666 677888876544555558875
No 87
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.55 E-value=0.061 Score=52.63 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=52.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 140 ~~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 176 (236)
T cd03219 140 PAGELSYGQQRRLEIARALAT---DP------KLLLL----------DEPAAGL------------------------NP 176 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 456899999999999998886 56 78888 7755555 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.....|=.+|+|++-.... +|+.+-+
T Consensus 177 ~--~~~~l-------~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 216 (236)
T cd03219 177 E--ETEEL-------AELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216 (236)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 3 34444 56677777544454555999887655 5665544
No 88
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.061 Score=51.93 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=52.2
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |-
T Consensus 127 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 163 (211)
T cd03264 127 KIGSLSGGMRRRVGIAQALVG---DP------SILIV----------DEPTAGL------------------------DP 163 (211)
T ss_pred chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 346899999999999999986 66 78888 6655555 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ -+.|.+++.. .|=.+|+|++....+ .|+.+-+
T Consensus 164 ~--~~~~l-------~~~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~l 202 (211)
T cd03264 164 E--ERIRF-------RNLLSELGED-RIVILSTHIVEDVESLCNQVAVL 202 (211)
T ss_pred H--HHHHH-------HHHHHHHhCC-CEEEEEcCCHHHHHHhCCEEEEE
Confidence 3 44555 5678888764 565555999887654 5766433
No 89
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.51 E-value=0.069 Score=52.44 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=53.2
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..++. +| ++..+ ||-.+-+ |-
T Consensus 136 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEP~~gL------------------------D~ 172 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLR---NP------KILLL----------DEATSAL------------------------DA 172 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence 346899999999999998875 66 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +...+ ...|.++. ..-|-.+++|++-...-+|+.+-+
T Consensus 173 ~--~~~~l-------~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l 210 (238)
T cd03249 173 E--SEKLV-------QEALDRAM-KGRTTIVIAHRLSTIRNADLIAVL 210 (238)
T ss_pred H--HHHHH-------HHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEE
Confidence 4 55556 55676765 444555559998777666665443
No 90
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.49 E-value=0.071 Score=51.59 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=52.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||-.+-+ |.
T Consensus 129 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 165 (222)
T cd03224 129 LAGTLSGGEQQMLAIARALMS---RP------KLLLL----------DEPSEGL------------------------AP 165 (222)
T ss_pred chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCcccC------------------------CH
Confidence 345899999999999988874 55 88888 7766655 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ..+|.++....-|=.+++|++-...+ .|+.+-+
T Consensus 166 ~--~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (222)
T cd03224 166 K--IVEEI-------FEAIRELRDEGVTILLVEQNARFALEIADRAYVL 205 (222)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEe
Confidence 4 44555 66777877644565666999876544 5655443
No 91
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.46 E-value=0.056 Score=53.28 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=55.2
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |-
T Consensus 129 ~~~~LS~G~~qrl~laral~~---~p------~llll----------DEP~~~L------------------------D~ 165 (236)
T TIGR03864 129 KVRELNGGHRRRVEIARALLH---RP------ALLLL----------DEPTVGL------------------------DP 165 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCccCC------------------------CH
Confidence 345899999999999999986 66 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +...+ .+.|.+++.. ..|=.+++|++-....+|+.+-+
T Consensus 166 ~--~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l 205 (236)
T TIGR03864 166 A--SRAAI-------VAHVRALCRDQGLSVLWATHLVDEIEADDRLVVL 205 (236)
T ss_pred H--HHHHH-------HHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEE
Confidence 4 55556 6677787643 44545559998777667776655
No 92
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.43 E-value=0.056 Score=52.77 Aligned_cols=73 Identities=22% Similarity=0.156 Sum_probs=53.2
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| +|..+ ||-.+-+ |..
T Consensus 145 ~~LS~Ge~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~- 180 (228)
T PRK10584 145 AQLSGGEQQRVALARAFNG---RP------DVLFA----------DEPTGNL------------------------DRQ- 180 (228)
T ss_pred hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CHH-
Confidence 4899999999999998886 56 78888 7766555 444
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLT 658 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~ 658 (926)
+...+ ...|.++... ..|=.+++|++-....+|+.+-
T Consensus 181 -~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~ 218 (228)
T PRK10584 181 -TGDKI-------ADLLFSLNREHGTTLILVTHDLQLAARCDRRLR 218 (228)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence 55556 6678887654 4455556999877777776543
No 93
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.41 E-value=0.062 Score=54.54 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=54.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.++|||..++. +| .|+.+ ||-.+-| |-
T Consensus 112 ~~~~LSgGe~qrv~iaraL~~---~p------~llll----------DEPt~~L------------------------D~ 148 (246)
T cd03237 112 EVPELSGGELQRVAIAACLSK---DA------DIYLL----------DEPSAYL------------------------DV 148 (246)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999998885 55 88898 7766666 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++... .-|=++|+|+...... .|+.+-+
T Consensus 149 ~--~~~~l-------~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l 189 (246)
T cd03237 149 E--QRLMA-------SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189 (246)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 45555 6778888764 4555666999776654 5766543
No 94
>PRK10908 cell division protein FtsE; Provisional
Probab=93.38 E-value=0.072 Score=51.96 Aligned_cols=75 Identities=19% Similarity=0.035 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 135 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 171 (222)
T PRK10908 135 PIQLSGGEQQRVGIARAVVN---KP------AVLLA----------DEPTGNL------------------------DDA 171 (222)
T ss_pred chhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCcC------------------------CHH
Confidence 36899999999999998886 66 78888 7766666 544
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ ...|.++....-|=++++|++-.... +|+.+-+
T Consensus 172 --~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 172 --LSEGI-------LRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred --HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 55556 56677776554455556999877665 4665443
No 95
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.074 Score=51.79 Aligned_cols=73 Identities=18% Similarity=0.098 Sum_probs=51.0
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 130 ~~LSgG~~qrl~la~al~~---~p------~lllL----------DEPt~~L------------------------D~~- 165 (220)
T cd03293 130 HQLSGGMRQRVALARALAV---DP------DVLLL----------DEPFSAL------------------------DAL- 165 (220)
T ss_pred ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------CCCCCCC------------------------CHH-
Confidence 5899999999999999987 66 78888 7755555 444
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLT 658 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~ 658 (926)
+...+ .+.|.++... ..|=++|+|++-... -+|+.+-
T Consensus 166 -~~~~~-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (220)
T cd03293 166 -TREQL-------QEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV 204 (220)
T ss_pred -HHHHH-------HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence 45555 5667777544 445556699987544 3566543
No 96
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.36 E-value=0.062 Score=53.37 Aligned_cols=75 Identities=17% Similarity=0.049 Sum_probs=55.7
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| +|..+ ||-.+.+ |..
T Consensus 151 ~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~ 187 (236)
T cd03267 151 VRQLSLGQRMRAEIAAALLH---EP------EILFL----------DEPTIGL------------------------DVV 187 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------CHH
Confidence 45799999999999999987 66 78888 8877777 555
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|++-...+ .|+.+-+
T Consensus 188 --~~~~l-------~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 227 (236)
T cd03267 188 --AQENI-------RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227 (236)
T ss_pred --HHHHH-------HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 66666 7778887654 3455556999876655 5665544
No 97
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.36 E-value=0.077 Score=51.75 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=52.3
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||.+++||..++. +| ++..+ ||-.+-+ |.+
T Consensus 148 ~~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 184 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIR---NP------QVLIL----------DEATSAL------------------------DAE 184 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 56899999999999998875 66 78888 6655555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ ...|.++.. ..|=.+|+|++......|+.+-+
T Consensus 185 --~~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l 221 (226)
T cd03248 185 --SEQQV-------QQALYDWPE-RRTVLVIAHRLSTVERADQILVL 221 (226)
T ss_pred --HHHHH-------HHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEe
Confidence 55555 667777765 23444459998877767766543
No 98
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.36 E-value=0.09 Score=51.64 Aligned_cols=78 Identities=17% Similarity=0.055 Sum_probs=54.1
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccc--cCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLV--VRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN 607 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcD--P~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~ 607 (926)
...+.+||||||.+++||..++. + | ++..+ ||-.+-+
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~---~~~p------~llLl----------DEPt~~L---------------------- 120 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFS---EPPG------TLFIL----------DEPSTGL---------------------- 120 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhh---CCCC------CEEEE----------eCCcccC----------------------
Confidence 35678999999999999998886 6 5 67777 6655544
Q ss_pred CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.. +...+ .+.|.++.....|=.+|+|++-....+|+.+-+
T Consensus 121 --D~~--~~~~l-------~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l 161 (176)
T cd03238 121 --HQQ--DINQL-------LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDF 161 (176)
T ss_pred --CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 444 55566 566777765445545559998777667765443
No 99
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.076 Score=49.17 Aligned_cols=72 Identities=24% Similarity=0.206 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834 536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN 615 (926)
Q Consensus 536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N 615 (926)
||||||.+++||..++.. | |+..+ ||..+-+ |-. +
T Consensus 81 lS~G~~~r~~l~~~l~~~---~------~i~il----------DEp~~~l------------------------D~~--~ 115 (157)
T cd00267 81 LSGGQRQRVALARALLLN---P------DLLLL----------DEPTSGL------------------------DPA--S 115 (157)
T ss_pred CCHHHHHHHHHHHHHhcC---C------CEEEE----------eCCCcCC------------------------CHH--H
Confidence 999999999999999883 5 88888 8877777 554 5
Q ss_pred hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhcce
Q psy834 616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSLTI 659 (926)
Q Consensus 616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~~v 659 (926)
..++ .+.|.++.....|=++++|+.-..... |+.+-+
T Consensus 116 ~~~l-------~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 153 (157)
T cd00267 116 RERL-------LELLRELAEEGRTVIIVTHDPELAELAADRVIVL 153 (157)
T ss_pred HHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5555 566777766534445559998887775 665443
No 100
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.31 E-value=0.068 Score=59.50 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=52.7
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||++.|||=.+. +. +|+..+ ||-.+-+ |..
T Consensus 476 ~LSGGqrQRialARaLl----~~-----~~illl----------DEpts~L------------------------D~~-- 510 (592)
T PRK10790 476 NLSVGQKQLLALARVLV----QT-----PQILIL----------DEATANI------------------------DSG-- 510 (592)
T ss_pred CCCHHHHHHHHHHHHHH----hC-----CCEEEE----------eCCcccC------------------------CHH--
Confidence 69999999999986554 34 489999 7655545 443
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.+. .+.|.++.. ..|..+|+|++-+...+|+.+-+
T Consensus 511 t~~~i-------~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l 547 (592)
T PRK10790 511 TEQAI-------QQALAAVRE-HTTLVVIAHRLSTIVEADTILVL 547 (592)
T ss_pred HHHHH-------HHHHHHHhC-CCEEEEEecchHHHHhCCEEEEE
Confidence 44444 455666654 37889999999999999998765
No 101
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.30 E-value=0.056 Score=51.96 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=46.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 125 ~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~~ 161 (198)
T TIGR01189 125 AAQLSAGQQRRLALARLWLS---RA------PLWIL----------DEPTTAL------------------------DKA 161 (198)
T ss_pred hhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CHH
Confidence 46899999999999988876 55 88888 7766666 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChh
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT 648 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~ 648 (926)
+...+ ...|.++.....|=++++|++.
T Consensus 162 --~~~~l-------~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 162 --GVALL-------AGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred --HHHHH-------HHHHHHHHhCCCEEEEEEcccc
Confidence 44555 5667777655556566688873
No 102
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.29 E-value=0.079 Score=60.33 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=53.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||++.|||=.|. .+| +|..+ ||--+-+ |..
T Consensus 600 ~~LSgGQrQRlalARall---~~p------~iliL----------DE~Ts~L------------------------D~~- 635 (694)
T TIGR03375 600 RSLSGGQRQAVALARALL---RDP------PILLL----------DEPTSAM------------------------DNR- 635 (694)
T ss_pred CCCCHHHHHHHHHHHHHh---cCC------CEEEE----------eCCCCCC------------------------CHH-
Confidence 579999999999997765 255 89999 7744444 333
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ ++.|.++.. ..|..+|+|++-+...+|+.+-+
T Consensus 636 -te~~i-------~~~l~~~~~-~~T~iiItHrl~~~~~~D~iivl 672 (694)
T TIGR03375 636 -SEERF-------KDRLKRWLA-GKTLVLVTHRTSLLDLVDRIIVM 672 (694)
T ss_pred -HHHHH-------HHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 33334 444666654 47889999999999999998765
No 103
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.25 E-value=0.1 Score=50.58 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=52.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||..+.+ |.
T Consensus 136 ~~~~LS~G~~qr~~laral~~---~p------~llll----------DEP~~~L------------------------D~ 172 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLR---KS------KILVL----------DEATASV------------------------DP 172 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence 456899999999999999986 66 78888 7877777 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +...+ ...|.++... -|=++++|++-.....|+.+-+
T Consensus 173 ~--~~~~l-------~~~l~~~~~~-~tii~~sh~~~~~~~~d~i~~l 210 (221)
T cd03244 173 E--TDALI-------QKTIREAFKD-CTVLTIAHRLDTIIDSDRILVL 210 (221)
T ss_pred H--HHHHH-------HHHHHHhcCC-CEEEEEeCCHHHHhhCCEEEEE
Confidence 4 44555 4556666542 4545559998766666665444
No 104
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.24 E-value=0.1 Score=51.13 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=52.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| +|..+ ||-.+-+ |-
T Consensus 140 ~~~~LS~G~~qrl~laral~~---~p------~illl----------DEP~~gL------------------------D~ 176 (226)
T cd03234 140 LVKGISGGERRRVSIAVQLLW---DP------KVLIL----------DEPTSGL------------------------DS 176 (226)
T ss_pred cccCcCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCcCC------------------------CH
Confidence 455899999999999998887 56 77888 7766666 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecCh--hhHHhhhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP--TTRSRVQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~--~t~sr~~~~~ 657 (926)
. +...+ ..+|.++.....|=++++|++ ....-.|+.+
T Consensus 177 ~--~~~~~-------~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~ 215 (226)
T cd03234 177 F--TALNL-------VSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL 215 (226)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE
Confidence 3 44455 567888776555667779997 3455566554
No 105
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.23 E-value=0.075 Score=52.25 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=54.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 142 ~~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 178 (243)
T TIGR02315 142 RADQLSGGQQQRVAIARALAQ---QP------DLILA----------DEPIASL------------------------DP 178 (243)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 346899999999999999886 66 78888 7766655 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus 179 ~--~~~~l-------~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 179 K--TSKQV-------MDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred H--HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 4 55566 6678887654 3444455999887655 5766544
No 106
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.098 Score=51.84 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=53.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.++|||..|+. +| ++..+ ||..+-+ |.
T Consensus 145 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~ 181 (252)
T PRK14272 145 PATGLSGGQQQRLCIARALAV---EP------EILLM----------DEPTSAL------------------------DP 181 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 457899999999999998887 66 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++.. .-|=.+++|++-.... +|+.+-+
T Consensus 182 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14272 182 A--STARI-------EDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFF 220 (252)
T ss_pred H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 4 55555 556777754 3344444888876665 5777655
No 107
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.18 E-value=0.066 Score=53.20 Aligned_cols=76 Identities=14% Similarity=-0.016 Sum_probs=54.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||-.+-+ |.
T Consensus 145 ~~~~LSgG~~qrv~laral~~---~p------~vlll----------DEP~~~L------------------------D~ 181 (253)
T TIGR02323 145 LPRAFSGGMQQRLQIARNLVT---RP------RLVFM----------DEPTGGL------------------------DV 181 (253)
T ss_pred CchhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CH
Confidence 356899999999999998876 66 88888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|-.+|+|++-.... +|+.+-+
T Consensus 182 ~--~~~~l-------~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l 222 (253)
T TIGR02323 182 S--VQARL-------LDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVM 222 (253)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4 55666 6777777654 4455566998877664 5665433
No 108
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.18 E-value=0.066 Score=56.55 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=53.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.++|||-.|+. +| ++..+ ||-.+-+ |-
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~---~p------~iLLL----------DEPtsgL------------------------D~ 209 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAI---QP------EILIF----------DEPTAGL------------------------DP 209 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCccCC------------------------CH
Confidence 345899999999999999988 66 78888 7755555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. ....+ .+.|.++....-|=.+|+|+.-...+ .|+.+-+
T Consensus 210 ~--~~~~l-------~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 210 K--GEHEM-------MQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 3 34444 56677776655576677999886654 6765433
No 109
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.15 E-value=0.074 Score=52.57 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=52.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||..++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 139 ~~~~LSgG~~qrv~laral~~---~p------~llll----------DEP~~gL------------------------D~ 175 (224)
T cd03220 139 PVKTYSSGMKARLAFAIATAL---EP------DILLI----------DEVLAVG------------------------DA 175 (224)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 346899999999999998887 55 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+++|++-...+ +|+.+-+
T Consensus 176 ~--~~~~~-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 215 (224)
T cd03220 176 A--FQEKC-------QRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215 (224)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 44455 56677776654454555999876654 5665443
No 110
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.14 E-value=0.069 Score=54.96 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=56.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||-.++. +| ++..+ ||-.+-| |-
T Consensus 141 ~~~~LSgGq~qrv~iAraL~~---~P------~llll----------DEPt~gL------------------------D~ 177 (287)
T PRK13637 141 SPFELSGGQKRRVAIAGVVAM---EP------KILIL----------DEPTAGL------------------------DP 177 (287)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCccCC------------------------CH
Confidence 456899999999999998877 77 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .++|.++... .-|=++|+|..-...+ +|+.+-+
T Consensus 178 ~--~~~~l-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l 218 (287)
T PRK13637 178 K--GRDEI-------LNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVM 218 (287)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 55566 6677888764 4566777999877655 6877665
No 111
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.11 E-value=0.086 Score=51.69 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=54.5
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||.+++||..++. +| +|..+ ||-.+-+ |..
T Consensus 144 ~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~-- 178 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALL---EP------KLAIL----------DEIDSGL------------------------DID-- 178 (243)
T ss_pred CcCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CHH--
Confidence 599999999999998876 55 78888 7766666 555
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~~v 659 (926)
+...+ .+.|.++.....|=.+|+|++-...+ .|+.+-+
T Consensus 179 ~~~~l-------~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l 218 (243)
T TIGR01978 179 ALKIV-------AEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVL 218 (243)
T ss_pred HHHHH-------HHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence 55666 67788887655566666999888776 3776544
No 112
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.11 E-value=0.081 Score=58.55 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=53.3
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||+..|||=.|.= +| |+..+ ||-.+.+ |.+
T Consensus 480 ~LSGGqrQRi~LARall~---~~------~ilil----------DEptsaL------------------------D~~-- 514 (582)
T PRK11176 480 LLSGGQRQRIAIARALLR---DS------PILIL----------DEATSAL------------------------DTE-- 514 (582)
T ss_pred cCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECccccC------------------------CHH--
Confidence 599999999998865432 45 89999 7766666 555
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.++ ...|.++.. ..|-.+|+|++.++..+|+.+-+
T Consensus 515 t~~~i-------~~~l~~~~~-~~tvI~VtHr~~~~~~~D~Ii~l 551 (582)
T PRK11176 515 SERAI-------QAALDELQK-NRTSLVIAHRLSTIEKADEILVV 551 (582)
T ss_pred HHHHH-------HHHHHHHhC-CCEEEEEecchHHHHhCCEEEEE
Confidence 44455 445555533 36778889999999999999877
No 113
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.09 E-value=0.078 Score=59.25 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=54.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||-.|.- +| ||..+ ||-.+-+ |..
T Consensus 450 ~~LSgGq~qRi~lARall~---~~------~illl----------DEpts~L------------------------D~~- 485 (569)
T PRK10789 450 VMLSGGQKQRISIARALLL---NA------EILIL----------DDALSAV------------------------DGR- 485 (569)
T ss_pred CcCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECccccC------------------------CHH-
Confidence 4699999999999987764 55 89999 7766555 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ .+.|.++. ...|-.+|+|++-+...+|+.+-+
T Consensus 486 -~~~~i-------~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l 522 (569)
T PRK10789 486 -TEHQI-------LHNLRQWG-EGRTVIISAHRLSALTEASEILVM 522 (569)
T ss_pred -HHHHH-------HHHHHHHh-CCCEEEEEecchhHHHcCCEEEEE
Confidence 44444 34455554 357888889999999999998766
No 114
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.07 E-value=0.098 Score=51.90 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=53.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |.
T Consensus 143 ~~~~LSgG~~qrv~laral~~---~p------~lllL----------DEP~~~L------------------------D~ 179 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAF---QP------EVLLA----------DEPTANL------------------------DP 179 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CH
Confidence 346899999999999998885 55 88888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
. +...+ .+.|.++.. .-|=.+++|++-... -+|+.+-+
T Consensus 180 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 180 E--NTAKI-------ESLFLELKK-DMTIVLVTHFPQQAARISDYVAFL 218 (250)
T ss_pred H--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4 55566 667777754 345555589987654 46766544
No 115
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.06 E-value=0.066 Score=52.89 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 134 ~~~LS~G~~qrl~la~al~~---~p------~llll----------DEP~~~L------------------------D~~ 170 (239)
T cd03296 134 PAQLSGGQRQRVALARALAV---EP------KVLLL----------DEPFGAL------------------------DAK 170 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 35899999999999998877 56 78888 7765555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhH-Hhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTR-SRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~-sr~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|++-.. .-+|+.+-+
T Consensus 171 --~~~~l-------~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 210 (239)
T cd03296 171 --VRKEL-------RRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM 210 (239)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 45555 6678888764 44555559998754 446776554
No 116
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.094 Score=51.11 Aligned_cols=75 Identities=19% Similarity=0.108 Sum_probs=52.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..++. +| ++..+ ||-.+-| |.
T Consensus 136 ~~~~LS~G~~~rv~la~al~~---~p------~llll----------DEP~~~L------------------------D~ 172 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLR---DP------KILIL----------DEATSNI------------------------DT 172 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence 356899999999999999975 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+ +...+ .+.|.++.. ..|=.+|+|++......|+.+-+
T Consensus 173 ~--~~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l 210 (229)
T cd03254 173 E--TEKLI-------QEALEKLMK-GRTSIIIAHRLSTIKNADKILVL 210 (229)
T ss_pred H--HHHHH-------HHHHHHhcC-CCEEEEEecCHHHHhhCCEEEEE
Confidence 4 44445 555666653 34444559999877777766544
No 117
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.05 E-value=0.084 Score=57.62 Aligned_cols=77 Identities=18% Similarity=-0.006 Sum_probs=55.8
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.++|||..|+. +| +|..+ ||-.+=+ |
T Consensus 131 ~~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D 167 (490)
T PRK10938 131 RRFKYLSTGETRKTLLCQALMS---EP------DLLIL----------DEPFDGL------------------------D 167 (490)
T ss_pred CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------C
Confidence 4667999999999999999986 67 89999 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.+++...-|=.+|+|+.-...+ +|+.+-+
T Consensus 168 ~~--~~~~l-------~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l 208 (490)
T PRK10938 168 VA--SRQQL-------AELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL 208 (490)
T ss_pred HH--HHHHH-------HHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 44 55555 67788887655565666998766555 4665544
No 118
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.09 Score=51.48 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=54.0
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||.+++||..++. +| +|..+ ||--+-+ |-.
T Consensus 135 ~~~LS~G~~~rl~la~aL~~---~p------~llll----------DEP~~~L------------------------D~~ 171 (236)
T cd03253 135 GLKLSGGEKQRVAIARAILK---NP------PILLL----------DEATSAL------------------------DTH 171 (236)
T ss_pred CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 56899999999999998887 66 78888 7766666 544
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ ...|.++.. .-|=.+++|++-.....|+.+-+
T Consensus 172 --~~~~l-------~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l 208 (236)
T cd03253 172 --TEREI-------QAALRDVSK-GRTTIVIAHRLSTIVNADKIIVL 208 (236)
T ss_pred --HHHHH-------HHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEE
Confidence 55566 556667665 44555559988776667776555
No 119
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.03 E-value=0.086 Score=58.80 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=52.4
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||+.+|||=.|. ++ +|+..+ ||-.+=+ |..
T Consensus 471 ~LSgGq~QRialARall----~~-----~~iliL----------DEpts~L------------------------D~~-- 505 (588)
T PRK13657 471 QLSGGERQRLAIARALL----KD-----PPILIL----------DEATSAL------------------------DVE-- 505 (588)
T ss_pred CCCHHHHHHHHHHHHHh----cC-----CCEEEE----------eCCccCC------------------------CHH--
Confidence 69999999998886543 34 489999 7755555 443
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.++ .+.|.++.. ..|..+|+|++-++..+|+.+-+
T Consensus 506 t~~~i-------~~~l~~~~~-~~tvIiitHr~~~~~~~D~ii~l 542 (588)
T PRK13657 506 TEAKV-------KAALDELMK-GRTTFIIAHRLSTVRNADRILVF 542 (588)
T ss_pred HHHHH-------HHHHHHHhc-CCEEEEEEecHHHHHhCCEEEEE
Confidence 44455 444555533 47888889999999999998777
No 120
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.98 E-value=0.091 Score=54.63 Aligned_cols=81 Identities=26% Similarity=0.277 Sum_probs=53.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
....||||||++.||||=-||. .| . +.+- |-||
T Consensus 142 HyP~qLSGGEQQRVAiARAfa~---~P-----~-vLfA-------------DEPT------------------------- 174 (228)
T COG4181 142 HYPAQLSGGEQQRVALARAFAG---RP-----D-VLFA-------------DEPT------------------------- 174 (228)
T ss_pred cCccccCchHHHHHHHHHHhcC---CC-----C-EEec-------------cCCC-------------------------
Confidence 4578999999999999999987 66 1 2222 2344
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHhhhhhcceeeec
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSRVQSSLTIQSAE 663 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr~~~~~~v~~aE 663 (926)
-|+++- .-....++|=+..+.-. |=.+|||.|..-+|++|.+.+...+
T Consensus 175 ---GNLD~~--Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~ 223 (228)
T COG4181 175 ---GNLDRA--TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223 (228)
T ss_pred ---CCcchh--HHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecce
Confidence 133332 11112556666555544 4455699999999999999876643
No 121
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=92.97 E-value=0.1 Score=57.15 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=55.3
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| +|..+ ||--+-+ |
T Consensus 399 ~~~~~LSgGqkqrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D 435 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLT---NP------RVLIL----------DEPTRGV------------------------D 435 (500)
T ss_pred CccccCCHHHHHHHHHHHHHhh---CC------CEEEE----------cCCCCCc------------------------C
Confidence 3456899999999999999985 66 78888 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .++|.++.....|=.+|+|+.-...+ +|+.+-+
T Consensus 436 ~~--~~~~l-------~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 436 VG--AKYEI-------YKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred Hh--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 44 45555 66788887766665556999877665 4666533
No 122
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=92.95 E-value=0.12 Score=50.80 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=54.7
Q ss_pred ccccccCchhHHHHHHHHHHHHHhc-------cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWK-------LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRA 602 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQK-------cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~ 602 (926)
...+..||||||.+++||..||..- .+| .+..+ ||..+-+
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~------~~lll----------DEp~~~l----------------- 164 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARL------EALFI----------DEGFGTL----------------- 164 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCC------CEEEE----------eCCcccC-----------------
Confidence 3457789999999999999999632 233 46666 6655555
Q ss_pred CCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 603 NPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 603 ~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.. ....+ ...|.++.....|=.+|+|++--..+++.-+-|
T Consensus 165 -------D~~--~~~~~-------~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~ 205 (213)
T cd03279 165 -------DPE--ALEAV-------ATALELIRTENRMVGVISHVEELKERIPQRLEV 205 (213)
T ss_pred -------CHH--HHHHH-------HHHHHHHHhCCCEEEEEECchHHHHhhCcEEEE
Confidence 333 44455 567788876555656669998777776554433
No 123
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.93 E-value=0.1 Score=52.99 Aligned_cols=73 Identities=16% Similarity=0.063 Sum_probs=52.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| +|..+ ||-.+-+ |.
T Consensus 139 ~~~~LSgG~~qrv~laraL~~---~p------~llll----------DEPt~~L------------------------D~ 175 (272)
T PRK15056 139 QIGELSGGQKKRVFLARAIAQ---QG------QVILL----------DEPFTGV------------------------DV 175 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 446799999999999998886 66 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhh
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSS 656 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~ 656 (926)
. +...+ .+.|.++.....|=.+|+|++-.... .|+.
T Consensus 176 ~--~~~~l-------~~~L~~~~~~g~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 176 K--TEARI-------ISLLRELRDEGKTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4 55666 67788887655565555999866544 4543
No 124
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.92 E-value=0.071 Score=51.30 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=48.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||..+.+ |-
T Consensus 120 ~~~~LS~G~~~rl~la~al~~---~p------~~lll----------DEP~~~L------------------------D~ 156 (195)
T PRK13541 120 KCYSLSSGMQKIVAIARLIAC---QS------DLWLL----------DEVETNL------------------------SK 156 (195)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 356899999999999988886 56 88888 8877777 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR 650 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~ 650 (926)
. +...+ ++.|.++.....|=++++|++-.-
T Consensus 157 ~--~~~~l-------~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 157 E--NRDLL-------NNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEeCCcccc
Confidence 4 45555 666766655566666668887543
No 125
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.92 E-value=1.3 Score=48.09 Aligned_cols=162 Identities=10% Similarity=0.019 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Q psy834 392 MQLQLNKEQQRLAPLLDRLRRYEADLK--ALY-KRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQV 468 (926)
Q Consensus 392 Lk~vnkKAIEQYEEfeEQyEELeaRrE--ELd-KekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi 468 (926)
+.+.-..++.+|....+++..+.++.. ... ...+...+.+..+-.+-...=..+++.++..|.++|..|..... .
T Consensus 144 ~~~~y~~~~~~y~r~lkqRN~lLk~~~~~~~~~~~l~~w~~~L~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~-~- 221 (365)
T TIGR00611 144 VEPVYLSAWSDYQRVLKQRNAALKQAQRQYGDRTTLEVWDSQLAELGAKVSAWRAEFIEKLEPEAQKAHQLLLPELE-S- 221 (365)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-
Confidence 444447788888888888888876421 000 12444455555555444455556778888999999998742110 0
Q ss_pred hhhhcCCCC--cccc-h----hhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHH
Q psy834 469 YLIVSGWPK--KKEN-L----VIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGER 541 (926)
Q Consensus 469 ~L~lSgwP~--GkGN-L----vIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEK 541 (926)
+.+.-.|+ +... + .-....++- -|.. ..-|.-.-+.|.+ .|+.. -..+|+|||
T Consensus 222 -~~l~y~~~~~~~~~~~~~~L~~~~~~d~~--------~g~T-------~~GPHRdDl~~~~--~g~~~--~~~~S~Gq~ 281 (365)
T TIGR00611 222 -LSLFYRGELWDKETDYAEALARNFERDLE--------RGYT-------LVGPHRDDLRFRL--NGLPV--EDFASQGQL 281 (365)
T ss_pred -eEEEEeCchHHHHHHHHHHHHHhHHHHHH--------cCCC-------CCCcchhceEEEE--CCEEH--HHhcChhHH
Confidence 00100111 0000 0 000000000 0000 0112222334444 22221 348999999
Q ss_pred HHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 542 TLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 542 SLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
.+++|||.+|-..+--....-.||..+ |||-+=|
T Consensus 282 r~l~lal~la~~~~l~~~~~~~pilLL----------DD~~seL 315 (365)
T TIGR00611 282 RSLALALRLAEGELLREEGGEYPILLL----------DDVASEL 315 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEE----------cCchhcc
Confidence 999999999985442111222599999 8888888
No 126
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.90 E-value=0.11 Score=50.47 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=50.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||-.+=+ |.
T Consensus 137 ~~~~LSgG~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 173 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLN---DP------PILLL----------DEPTSAM------------------------DM 173 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence 466999999999999999986 56 78888 7655555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~ 658 (926)
. +...+ .+.|.++... -|=.+|+|+.-...-.|+.+-
T Consensus 174 ~--~~~~l-------~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~ 210 (220)
T cd03245 174 N--SEERL-------KERLRQLLGD-KTLIIITHRPSLLDLVDRIIV 210 (220)
T ss_pred H--HHHHH-------HHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEE
Confidence 4 44555 5667777653 344455898876555555543
No 127
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=92.87 E-value=0.086 Score=59.97 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=52.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
-..||||||+++|||=.|.= +| ||..+ ||--+-+ |..
T Consensus 586 G~~LSGGQrQRialARAll~---~p------~iLiL----------DEpTS~L------------------------D~~ 622 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVR---KP------RILLF----------DEATSAL------------------------DNR 622 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH
Confidence 35799999999999876542 55 89999 7765555 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.++ .+.|.++ ..|..+|+|++-+...+|+.+-+
T Consensus 623 --te~~i-------~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl 657 (686)
T TIGR03797 623 --TQAIV-------SESLERL---KVTRIVIAHRLSTIRNADRIYVL 657 (686)
T ss_pred --HHHHH-------HHHHHHh---CCeEEEEecChHHHHcCCEEEEE
Confidence 33344 2234444 36899999999999999998766
No 128
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.87 E-value=0.089 Score=53.96 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=58.0
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..++. +| +|..+ ||..+.+ |
T Consensus 137 ~~~~~LS~G~~qrl~laraL~~---~p------~lLil----------DEPt~gL------------------------D 173 (283)
T PRK13636 137 KPTHCLSFGQKKRVAIAGVLVM---EP------KVLVL----------DEPTAGL------------------------D 173 (283)
T ss_pred CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------C
Confidence 4577999999999999988876 77 88888 8887777 6
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ ..+|.++... .-|=.+++|+.....+ +|+.+-+
T Consensus 174 ~~--~~~~l-------~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 174 PM--GVSEI-------MKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred HH--HHHHH-------HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 55 66666 6678888764 4565666999887654 6776544
No 129
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.85 E-value=0.1 Score=51.10 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=55.0
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-..-+ |..
T Consensus 136 ~~~LS~G~~qrv~la~al~~---~p------~lllL----------DEP~~~L------------------------D~~ 172 (234)
T cd03251 136 GVKLSGGQRQRIAIARALLK---DP------PILIL----------DEATSAL------------------------DTE 172 (234)
T ss_pred CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CHH
Confidence 56899999999999999986 56 68888 7766666 555
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.++.. ..|=.+++|++-.....|+.+-+
T Consensus 173 --~~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l 209 (234)
T cd03251 173 --SERLV-------QAALERLMK-NRTTFVIAHRLSTIENADRIVVL 209 (234)
T ss_pred --HHHHH-------HHHHHHhcC-CCEEEEEecCHHHHhhCCEEEEe
Confidence 55556 566777764 44555569999888877777554
No 130
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.84 E-value=0.085 Score=54.04 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=54.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 147 ~~~~LS~Gq~qrv~laral~~---~p------~lLlL----------DEPt~~L------------------------D~ 183 (289)
T PRK13645 147 SPFELSGGQKRRVALAGIIAM---DG------NTLVL----------DEPTGGL------------------------DP 183 (289)
T ss_pred ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999998887 67 78888 8877766 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++... .-|=.+|+|++-...+ +|+.+-+
T Consensus 184 ~--~~~~l-------~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l 224 (289)
T PRK13645 184 K--GEEDF-------INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 224 (289)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4 44445 5667777664 3455555998876544 5776554
No 131
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.83 E-value=0.095 Score=50.80 Aligned_cols=74 Identities=15% Similarity=0.051 Sum_probs=51.0
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |-.
T Consensus 131 ~~~LS~G~~qrv~la~al~~---~p------~llll----------DEP~~~L------------------------D~~ 167 (220)
T cd03263 131 ARTLSGGMKRKLSLAIALIG---GP------SVLLL----------DEPTSGL------------------------DPA 167 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCCCCC------------------------CHH
Confidence 45899999999999999885 66 78888 7766655 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ -+.|.++... -|=.+++|++-...+ +|+.+-+
T Consensus 168 --~~~~l-------~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l 205 (220)
T cd03263 168 --SRRAI-------WDLILEVRKG-RSIILTTHSMDEAEALCDRIAIM 205 (220)
T ss_pred --HHHHH-------HHHHHHHhcC-CEEEEEcCCHHHHHHhcCEEEEE
Confidence 44555 4567777653 444444898876655 5665443
No 132
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=0.1 Score=50.40 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=52.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| +|..+ ||-.+-+ |..
T Consensus 127 ~~LS~G~~qrv~ia~al~~---~p------~llll----------DEP~~~L------------------------D~~- 162 (211)
T cd03298 127 GELSGGERQRVALARVLVR---DK------PVLLL----------DEPFAAL------------------------DPA- 162 (211)
T ss_pred ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH-
Confidence 4899999999999999984 56 78888 7766666 444
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+++|++-.... .|+.+-+
T Consensus 163 -~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 202 (211)
T cd03298 163 -LRAEM-------LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL 202 (211)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEE
Confidence 44555 6677777654 3454555998876654 6766544
No 133
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=92.80 E-value=0.1 Score=57.67 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=52.5
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+.+|||=.|.= +| |+..+ ||-.+-+ |..
T Consensus 475 ~~LSgGq~Qrl~laRal~~---~~------~ilil----------DEpts~l------------------------D~~- 510 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILK---DA------PILLL----------DEATSAL------------------------DAE- 510 (576)
T ss_pred CcCCHHHHHHHHHHHHHHh---CC------CeEEE----------eCccccc------------------------CHH-
Confidence 3799999999999976542 44 89999 7766666 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ ...|..+.. ..|...|+|++.....+|+.+.+
T Consensus 511 -~~~~i-------~~~l~~~~~-~~t~IiitH~~~~~~~~d~vi~l 547 (576)
T TIGR02204 511 -SEQLV-------QQALETLMK-GRTTLIIAHRLATVLKADRIVVM 547 (576)
T ss_pred -HHHHH-------HHHHHHHhC-CCEEEEEecchHHHHhCCEEEEE
Confidence 32333 334555543 46888889999999999998776
No 134
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.75 E-value=0.084 Score=52.01 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=52.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 122 ~~~~LS~G~~qrv~laral~~---~p------~vllL----------DEPt~~L------------------------D~ 158 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLL---EP------PFLIA----------DEPTTDL------------------------DV 158 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccc------------------------CH
Confidence 446899999999999999886 66 78888 7755555 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+++|++-...+ +|+.+-+
T Consensus 159 ~--~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 199 (230)
T TIGR02770 159 V--NQARV-------LKLLRELRQLFGTGILLITHDLGVVARIADEVAVM 199 (230)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 34444 5567777654 4465666999877765 5655443
No 135
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.74 E-value=0.1 Score=51.80 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=53.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |.
T Consensus 146 ~~~~LSgGq~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 182 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAV---EP------EVLLM----------DEPASAL------------------------DP 182 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999998876 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.. ..|=.+|+|++-...+ +|+.+-+
T Consensus 183 ~--~~~~l-------~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 183 I--ATQKI-------EELIHELKA-RYTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred H--HHHHH-------HHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEE
Confidence 4 44455 566777754 3465666999877655 6776555
No 136
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.72 E-value=0.12 Score=51.74 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=54.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||..++||..++. +| ++..+ ||-..-+ |.
T Consensus 135 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~ 171 (255)
T PRK11231 135 RLTDLSGGQRQRAFLAMVLAQ---DT------PVVLL----------DEPTTYL------------------------DI 171 (255)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 356899999999999998887 67 88888 7766555 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++....-|-.+++|++-...+ .|+.+-+
T Consensus 172 ~--~~~~l-------~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 172 N--HQVEL-------MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 4 55666 66788877654565555999887554 5665544
No 137
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.69 E-value=0.079 Score=54.16 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=54.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||.+++||..|+. +| +|..+ ||-.+-+ |.+
T Consensus 142 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~gL------------------------D~~ 178 (280)
T PRK13633 142 PHLLSGGQKQRVAIAGILAM---RP------ECIIF----------DEPTAML------------------------DPS 178 (280)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 36999999999999999876 66 77777 6655555 544
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.++... .-|-.+|+|+.-....+|+.+-+
T Consensus 179 --~~~~l-------~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l 217 (280)
T PRK13633 179 --GRREV-------VNTIKELNKKYGITIILITHYMEEAVEADRIIVM 217 (280)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEE
Confidence 55555 5667777654 45666679999887777776554
No 138
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.69 E-value=0.12 Score=51.50 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=53.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| ++..+ ||-.+-+ |
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D 179 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAI---EP------EVILM----------DEPCSAL------------------------D 179 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------C
Confidence 4567899999999999999975 66 78888 7765555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~~v 659 (926)
-. +...+ .++|.++. ..-|=.+|+|+.-...++ |+.+-+
T Consensus 180 ~~--~~~~l-------~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 180 PV--STMRI-------EELMQELK-QNYTIAIVTHNMQQAARASDWTGFL 219 (251)
T ss_pred HH--HHHHH-------HHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEE
Confidence 44 44444 45676764 334555559998887775 776554
No 139
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.68 E-value=0.091 Score=53.66 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=55.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||-.+-+ |-.
T Consensus 134 ~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~gL------------------------D~~ 170 (274)
T PRK13644 134 PKTLSGGQGQCVALAGILTM---EP------ECLIF----------DEVTSML------------------------DPD 170 (274)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 36899999999999998887 67 78888 6655555 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.++....-|-.+++|+.-....+|+.+-+
T Consensus 171 --~~~~l-------~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l 208 (274)
T PRK13644 171 --SGIAV-------LERIKKLHEKGKTIVYITHNLEELHDADRIIVM 208 (274)
T ss_pred --HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEE
Confidence 44555 566777776556767779998888777776554
No 140
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.68 E-value=0.097 Score=52.04 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=54.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |.
T Consensus 128 ~~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 164 (241)
T PRK14250 128 DVKNLSGGEAQRVSIARTLAN---NP------EVLLL----------DEPTSAL------------------------DP 164 (241)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999999885 66 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+|+|+.-.... +|+.+-+
T Consensus 165 ~--~~~~l-------~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l 205 (241)
T PRK14250 165 T--STEII-------EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFL 205 (241)
T ss_pred H--HHHHH-------HHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEE
Confidence 4 55566 6678887654 4465556999876544 6776544
No 141
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.67 E-value=0.12 Score=51.71 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=54.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D 187 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALAT---NP------DVLLM----------DEPTSAL------------------------D 187 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------C
Confidence 3456899999999999998887 66 78888 7766666 5
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
-+ +...+ .+.|.++.. ..|=++|+|+.-... -+|+.+-+
T Consensus 188 ~~--~~~~l-------~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 188 PV--STRKI-------EELILKLKE-KYTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred HH--HHHHH-------HHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 44 55555 667888865 356677799987644 46766544
No 142
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.61 E-value=0.12 Score=51.71 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=54.3
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 144 ~~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D 180 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAV---EP------DVLLM----------DEPCSAL------------------------D 180 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------C
Confidence 4566899999999999998886 56 88888 7766655 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
.. +...+ .+.|.++.. .-|-.+|+|+.-... -+|+.+-+
T Consensus 181 ~~--~~~~l-------~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 181 PI--STLAI-------EDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred HH--HHHHH-------HHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 44 44555 677888864 346556699987654 46876654
No 143
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.60 E-value=0.1 Score=49.78 Aligned_cols=70 Identities=14% Similarity=0.049 Sum_probs=50.0
Q ss_pred CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834 536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN 615 (926)
Q Consensus 536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N 615 (926)
||||||.+++||..++. +| ++..+ ||-.+-+ |.. +
T Consensus 105 LS~G~~qrl~la~al~~---~p------~llll----------DEP~~~L------------------------D~~--~ 139 (182)
T cd03215 105 LSGGNQQKVVLARWLAR---DP------RVLIL----------DEPTRGV------------------------DVG--A 139 (182)
T ss_pred cCHHHHHHHHHHHHHcc---CC------CEEEE----------CCCCcCC------------------------CHH--H
Confidence 99999999999998887 66 78888 7755555 444 4
Q ss_pred hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834 616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
...+ .+.|.++....-|=.+++|+.-...+ +|+.+
T Consensus 140 ~~~l-------~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~ 175 (182)
T cd03215 140 KAEI-------YRLIRELADAGKAVLLISSELDELLGLCDRIL 175 (182)
T ss_pred HHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4455 66788886654555555999877766 45543
No 144
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.58 E-value=0.12 Score=51.34 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=53.2
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||..++. +| +|..+ ||..+-+ |.
T Consensus 143 ~~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~ 179 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMAV---SP------SVLLM----------DEPASAL------------------------DP 179 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 456899999999999999876 66 78888 7755544 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++.. .-|-.+|+|++-...+ +|+.+-+
T Consensus 180 ~--~~~~l-------~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l 218 (250)
T PRK14245 180 I--STAKV-------EELIHELKK-DYTIVIVTHNMQQAARVSDKTAFF 218 (250)
T ss_pred H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence 3 34444 566777754 3566666999987655 6887665
No 145
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.57 E-value=0.1 Score=50.87 Aligned_cols=76 Identities=9% Similarity=-0.033 Sum_probs=54.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 121 ~~~~LS~G~~~rv~laral~~---~p------~llll----------DEP~~~L------------------------D~ 157 (223)
T TIGR03740 121 KAKQFSLGMKQRLGIAIALLN---HP------KLLIL----------DEPTNGL------------------------DP 157 (223)
T ss_pred hHhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCccCC------------------------CH
Confidence 346899999999999998887 56 88888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+++|++-.... .|+.+-+
T Consensus 158 ~--~~~~l-------~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 197 (223)
T TIGR03740 158 I--GIQEL-------RELIRSFPEQGITVILSSHILSEVQQLADHIGII 197 (223)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 4 55556 56777776554565566999887654 5766554
No 146
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=92.55 E-value=0.1 Score=51.32 Aligned_cols=74 Identities=24% Similarity=0.179 Sum_probs=53.0
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||..++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 128 ~~LS~G~~qrv~laral~~---~p------~lllL----------DEP~~gL------------------------D~~- 163 (232)
T PRK10771 128 GQLSGGQRQRVALARCLVR---EQ------PILLL----------DEPFSAL------------------------DPA- 163 (232)
T ss_pred ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence 4899999999999998886 66 78888 7766666 444
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .++|.++... .-|=.+++|++-.... .|+.+-+
T Consensus 164 -~~~~~-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 203 (232)
T PRK10771 164 -LRQEM-------LTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVV 203 (232)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 45555 6677787664 3455555999887655 5776555
No 147
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.48 E-value=0.1 Score=51.73 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=53.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..|+- +| ++..+ ||-.+-+ |.
T Consensus 132 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 168 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAA---DP------PLLLM----------DEPFGAL------------------------DP 168 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CH
Confidence 346899999999999998885 66 78888 7766655 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++... .-|=.+|+|++-...+ +|+.+-+
T Consensus 169 ~--~~~~l-------~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l 209 (242)
T cd03295 169 I--TRDQL-------QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIM 209 (242)
T ss_pred H--HHHHH-------HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4 56666 6678888764 3454555999876554 5665543
No 148
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=92.47 E-value=0.12 Score=51.68 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=54.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||..+-+ |..
T Consensus 135 ~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~ 171 (256)
T TIGR03873 135 MSTLSGGERQRVHVARALAQ---EP------KLLLL----------DEPTNHL------------------------DVR 171 (256)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCccccC------------------------CHH
Confidence 45899999999999999887 66 78888 7776666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
+...+ .+.|.++....-|=.+++|++-... -+|+.+-+
T Consensus 172 --~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 172 --AQLET-------LALVRELAATGVTVVAALHDLNLAASYCDHVVVL 210 (256)
T ss_pred --HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 55566 6778888755445455589887664 46766554
No 149
>PRK14079 recF recombination protein F; Provisional
Probab=92.46 E-value=2.2 Score=46.03 Aligned_cols=159 Identities=11% Similarity=0.023 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Q psy834 392 MQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLI 471 (926)
Q Consensus 392 Lk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~ 471 (926)
+.....+++.+|....+++..+.+...+ ...+...+.+..+-.+-...=...++.++..|.++|..|. ... . |.
T Consensus 140 l~~~y~~~l~~y~k~lkqRn~lLk~~~~--~~l~~w~~~l~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~-~~~-~--l~ 213 (349)
T PRK14079 140 LSARYAALLSAYERAVQQRNAALKSGGG--WGLHVWDDELVKLGDEIMALRRRALTRLSELAREAYAELG-SRK-P--LR 213 (349)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC-c--EE
Confidence 3344467777888887777777764321 1244455555555555555556677888899999999872 111 1 11
Q ss_pred hcCCCCcccc-hhh----hhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHH
Q psy834 472 VSGWPKKKEN-LVI----VVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAAL 546 (926)
Q Consensus 472 lSgwP~GkGN-LvI----v~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVAL 546 (926)
+.--++.... +.- .+..++- -|.. ..-|.-.-+.|.+. |+. --.-+|+|||.+++|
T Consensus 214 l~y~~~~~~~~~~~~l~~~~~~d~~--------~g~T-------~~GpHRdD~~~~~~--g~~--~~~~~S~Gqqr~~~l 274 (349)
T PRK14079 214 LELSESTAPEGYLAALEARRAEELA--------RGAT-------VVGPHRDDLVLTLE--GRP--AHRYASRGEARTVAL 274 (349)
T ss_pred EEEecCcCHHHHHHHHHHhhHHHHH--------cCCC-------CCCCchhceEEEEC--CEe--hHHhCChhHHHHHHH
Confidence 1000110000 000 0000000 0000 01122222334442 332 224799999999999
Q ss_pred HHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 547 AMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 547 ALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
|+.+|-..+--....-.|+..+ ||+-+-|
T Consensus 275 al~la~~~~~~~~~~~~pilLl----------Dd~~seL 303 (349)
T PRK14079 275 ALRLAEHRLLWEHFGEAPVLLV----------DDFTAEL 303 (349)
T ss_pred HHHHHHHHHHHHhcCCCCEEEE----------cccchhc
Confidence 9999922211111122589999 9988888
No 150
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=92.42 E-value=0.15 Score=45.06 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=20.9
Q ss_pred ccccccCchhHH-HHHHHHHHHHHhcc
Q psy834 530 YVGIQHLSGGER-TLAALAMIFTIWKL 555 (926)
Q Consensus 530 ~QsIQQLSGGEK-SLVALALIFAIQKc 555 (926)
...+..|||||| .+++|||..|+...
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~ 53 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAAL 53 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHH
Confidence 568899999999 88888888887654
No 151
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.36 E-value=0.13 Score=56.27 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=54.6
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| +|..+ ||--+=+ |
T Consensus 387 ~~~~~LSgGq~qrv~la~al~~---~p------~illL----------DEPt~gL------------------------D 423 (491)
T PRK10982 387 TQIGSLSGGNQQKVIIGRWLLT---QP------EILML----------DEPTRGI------------------------D 423 (491)
T ss_pred cccccCCcHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccc------------------------C
Confidence 4556999999999999998875 77 78888 6633333 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ +++|.++.....|=.+|+|+.-...+ .|+.+-+
T Consensus 424 ~~--~~~~~-------~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 424 VG--AKFEI-------YQLIAELAKKDKGIIIISSEMPELLGITDRILVM 464 (491)
T ss_pred hh--HHHHH-------HHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEE
Confidence 33 44445 67788887776776677999776655 4666544
No 152
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.32 E-value=0.099 Score=53.10 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||...-+ |..
T Consensus 140 ~~~LS~G~~qrl~laral~~---~p------~lllL----------DEP~~gL------------------------D~~ 176 (271)
T PRK13632 140 PQNLSGGQKQRVAIASVLAL---NP------EIIIF----------DESTSML------------------------DPK 176 (271)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 36999999999999998885 55 88999 8877766 555
Q ss_pred CCchhhhhhcccCCCCChhhhccCC-CceeEeecChhhHHhhhhhc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSP-NTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~-~tr~~v~~~~~t~sr~~~~~ 657 (926)
+...+ .+.|.++.... .|-.+++|++-...-+|+.+
T Consensus 177 --~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~ 213 (271)
T PRK13632 177 --GKREI-------KKIMVDLRKTRKKTLISITHDMDEAILADKVI 213 (271)
T ss_pred --HHHHH-------HHHHHHHHHhcCcEEEEEEechhHHhhCCEEE
Confidence 55666 77888887653 45556699886555555554
No 153
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.32 E-value=0.11 Score=49.58 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=51.2
Q ss_pred CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834 536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN 615 (926)
Q Consensus 536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N 615 (926)
||||||.+++||..++. +| ++..+ ||-.+-+ |-. +
T Consensus 101 lS~G~~qr~~la~al~~---~p------~llil----------DEP~~~L------------------------D~~--~ 135 (178)
T cd03229 101 LSGGQQQRVALARALAM---DP------DVLLL----------DEPTSAL------------------------DPI--T 135 (178)
T ss_pred CCHHHHHHHHHHHHHHC---CC------CEEEE----------eCCcccC------------------------CHH--H
Confidence 99999999999998887 56 78888 7766666 555 6
Q ss_pred hhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 616 LSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 616 ~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
...+ .++|.++... ..|=.+|+|++-.... +|+.+
T Consensus 136 ~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 172 (178)
T cd03229 136 RREV-------RALLKSLQAQLGITVVLVTHDLDEAARLADRVV 172 (178)
T ss_pred HHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 6666 6778888776 3454555998876654 45543
No 154
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.30 E-value=0.12 Score=51.34 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=53.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| ++..+ ||-.+-+ |
T Consensus 145 ~~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D 181 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAM---KP------KILLM----------DEPTANI------------------------D 181 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------C
Confidence 3457999999999999998876 66 78888 7766666 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.++.. ..|=.+++|++-...+ +|+.+-+
T Consensus 182 ~~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 182 PV--GTAKI-------EELLFELKK-EYTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred HH--HHHHH-------HHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEE
Confidence 44 55555 667777765 2455555999887554 6765443
No 155
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=92.29 E-value=0.12 Score=57.05 Aligned_cols=76 Identities=17% Similarity=0.092 Sum_probs=55.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||++++||..|+. +| +|..+ ||-.+=+ |.
T Consensus 165 ~~~~LSgGq~qrv~iA~al~~---~p------~lllL----------DEPt~~L------------------------D~ 201 (520)
T TIGR03269 165 IARDLSGGEKQRVVLARQLAK---EP------FLFLA----------DEPTGTL------------------------DP 201 (520)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEe----------eCCcccC------------------------CH
Confidence 467899999999999999986 66 78888 7755555 55
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +..++ -++|.++... ..|=.+|+|.+-...+ +|+.+-+
T Consensus 202 ~--~~~~l-------~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l 242 (520)
T TIGR03269 202 Q--TAKLV-------HNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL 242 (520)
T ss_pred H--HHHHH-------HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 5 56666 6678888654 4565666999877654 5776544
No 156
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=92.28 E-value=0.12 Score=51.12 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=52.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||-.+-+ |..
T Consensus 112 ~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~gL------------------------D~~ 148 (230)
T TIGR01184 112 PGQLSGGMKQRVAIARALSI---RP------KVLLL----------DEPFGAL------------------------DAL 148 (230)
T ss_pred hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCCcCC------------------------CHH
Confidence 46899999999999999887 66 78888 7755545 433
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
+...+ -+.|.++... .-|=.+|+|++-... -+|+.+-+
T Consensus 149 --~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 188 (230)
T TIGR01184 149 --TRGNL-------QEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188 (230)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 44455 5567777664 446566699987644 46766544
No 157
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.26 E-value=0.13 Score=48.77 Aligned_cols=71 Identities=18% Similarity=0.036 Sum_probs=52.2
Q ss_pred CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834 536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN 615 (926)
Q Consensus 536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N 615 (926)
|||||+.+++||..++. +| ++..+ ||-.+-+ |.. +
T Consensus 96 LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~~--~ 130 (173)
T cd03230 96 LSGGMKQRLALAQALLH---DP------ELLIL----------DEPTSGL------------------------DPE--S 130 (173)
T ss_pred cCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------CHH--H
Confidence 99999999999999986 66 88888 8877777 555 5
Q ss_pred hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
...+ .+.|.++.....|=++++|++-.... .|+.+-
T Consensus 131 ~~~l-------~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~ 167 (173)
T cd03230 131 RREF-------WELLRELKKEGKTILLSSHILEEAERLCDRVAI 167 (173)
T ss_pred HHHH-------HHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence 5566 67788887654455555999876654 455443
No 158
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=92.22 E-value=0.12 Score=52.57 Aligned_cols=74 Identities=19% Similarity=0.066 Sum_probs=50.6
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| +|..+ ||-.+-+ |..
T Consensus 141 ~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~~ 177 (269)
T PRK11831 141 PSELSGGMARRAALARAIAL---EP------DLIMF----------DEPFVGQ------------------------DPI 177 (269)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CHH
Confidence 46899999999999998886 56 78888 6655544 333
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ .+.|.++... .-|=.+|+|+.-...+ +|+.+-
T Consensus 178 --~~~~l-------~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~ 216 (269)
T PRK11831 178 --TMGVL-------VKLISELNSALGVTCVVVSHDVPEVLSIADHAYI 216 (269)
T ss_pred --HHHHH-------HHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE
Confidence 34444 5677787664 3455556999765554 566543
No 159
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=92.20 E-value=0.13 Score=51.98 Aligned_cols=75 Identities=20% Similarity=0.125 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| +|..+ ||-.+-+ |-.
T Consensus 145 ~~~LSgG~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~~ 181 (265)
T PRK10575 145 VDSLSGGERQRAWIAMLVAQ---DS------RCLLL----------DEPTSAL------------------------DIA 181 (265)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 35899999999999999887 66 88888 8866666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ ..+|.+++.. .-|=.+++|++....+ +|+.+-+
T Consensus 182 --~~~~~-------~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l 221 (265)
T PRK10575 182 --HQVDV-------LALVHRLSQERGLTVIAVLHDINMAARYCDYLVAL 221 (265)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 45555 6678888765 3444444999876654 5766543
No 160
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.19 E-value=0.1 Score=50.80 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=51.9
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||..++||..|+. +| ++..+ ||-.+-+ |-.
T Consensus 126 ~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~- 161 (207)
T PRK13539 126 GYLSAGQKRRVALARLLVS---NR------PIWIL----------DEPTAAL------------------------DAA- 161 (207)
T ss_pred hhcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence 4799999999999988887 56 78888 7755555 333
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
....+ .+.|.++....-|=.+++|+...... ++.+.+
T Consensus 162 -~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~ 198 (207)
T PRK13539 162 -AVALF-------AELIRAHLAQGGIVIAATHIPLGLPG-ARELDL 198 (207)
T ss_pred -HHHHH-------HHHHHHHHHCCCEEEEEeCCchhhcc-CcEEee
Confidence 44455 67788876655565566998876665 666544
No 161
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.18 E-value=0.15 Score=51.45 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHHHhc---cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWK---LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQK---cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
+..||||||.+++||..|+... .+| +|..+ ||-.+-+
T Consensus 132 ~~~LSgGe~qrv~la~al~~~~~~~~~p------~lllL----------DEPt~~L------------------------ 171 (258)
T PRK13548 132 YPQLSGGEQQRVQLARVLAQLWEPDGPP------RWLLL----------DEPTSAL------------------------ 171 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcccccCCCC------CEEEE----------eCCcccC------------------------
Confidence 4699999999999999888532 456 78888 7766656
Q ss_pred CCCCCchhhhhhcccCCCCChhhhc-cCCCceeEeecChhhHHh-hhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVS-SSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~-~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
|.. +...+ .+.|.++. ....|=.+++|.+--..+ +|+.+-+
T Consensus 172 D~~--~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 214 (258)
T PRK13548 172 DLA--HQHHV-------LRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL 214 (258)
T ss_pred CHH--HHHHH-------HHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence 444 44555 56777877 444565555898876554 5766544
No 162
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.15 E-value=0.13 Score=50.92 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=52.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||-.+-+ |-
T Consensus 145 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 181 (252)
T PRK14239 145 SALGLSGGQQQRVCIARVLAT---SP------KIILL----------DEPTSAL------------------------DP 181 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccc------------------------CH
Confidence 456899999999999998875 66 78888 7755555 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ -.+|.++.. ..|-.+|+|+.-...+ +|+.+-+
T Consensus 182 ~--~~~~l-------~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 182 I--SAGKI-------EETLLGLKD-DYTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred H--HHHHH-------HHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEE
Confidence 3 44445 456777754 3566666999866544 6877655
No 163
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=92.15 E-value=0.15 Score=51.72 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=53.8
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 159 ~~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D 195 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAV---SP------EVILM----------DEPCSAL------------------------D 195 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCcCC------------------------C
Confidence 3456899999999999999987 66 78888 7766666 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~~v 659 (926)
.. +...+ .+.|.+++. .-|=++|+|+.-....+ |+.+-+
T Consensus 196 ~~--~~~~l-------~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 196 PI--ATAKV-------EELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred HH--HHHHH-------HHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEE
Confidence 44 44455 566777765 24656669998877554 665443
No 164
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.14 E-value=0.15 Score=50.92 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=53.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |-
T Consensus 147 ~~~~LSgG~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~ 183 (254)
T PRK14273 147 NALSLSGGQQQRLCIARTLAI---EP------NVILM----------DEPTSAL------------------------DP 183 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccc------------------------CH
Confidence 456899999999999998875 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .++|.++.. ..|=.+++|++-.... +|+.+-+
T Consensus 184 ~--~~~~l-------~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l 222 (254)
T PRK14273 184 I--STGKI-------EELIINLKE-SYTIIIVTHNMQQAGRISDRTAFF 222 (254)
T ss_pred H--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 55555 667778754 3454455999887655 5665543
No 165
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.11 E-value=0.11 Score=53.13 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=54.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||-.|+. +| +|..+ ||..+-+ |.+
T Consensus 138 ~~~LS~G~~qrv~lAraL~~---~p------~llll----------DEPt~~L------------------------D~~ 174 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIAL---RP------EIIIL----------DESTSML------------------------DPT 174 (277)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 46899999999999999987 77 78888 7755555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|..-....+|+.+-+
T Consensus 175 --~~~~l-------~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l 213 (277)
T PRK13642 175 --GRQEI-------MRVIHEIKEKYQLTVLSITHDLDEAASSDRILVM 213 (277)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence 44455 5677777765 45656669998887777776543
No 166
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.01 E-value=0.14 Score=52.43 Aligned_cols=75 Identities=12% Similarity=0.056 Sum_probs=54.0
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||-.++. +| ++..+ ||-.+-+ |..
T Consensus 136 ~~~LSgG~~qrv~laraL~~---~p------~llll----------DEPt~~L------------------------D~~ 172 (274)
T PRK13647 136 PYHLSYGQKKRVAIAGVLAM---DP------DVIVL----------DEPMAYL------------------------DPR 172 (274)
T ss_pred hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCCcCC------------------------CHH
Confidence 34899999999999999887 66 77788 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ -++|.++....-|=++|+|+.-...+ .|+.+-+
T Consensus 173 --~~~~l-------~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l 211 (274)
T PRK13647 173 --GQETL-------MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL 211 (274)
T ss_pred --HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44555 56777887654566667999876644 6766544
No 167
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.98 E-value=0.14 Score=53.69 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=55.8
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.++|||-.++. +| +|..+ ||..+-+ |
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~---~P------~lLlL----------DEPt~~L------------------------D 197 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAM---EP------DFLVF----------DEPTAGL------------------------D 197 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCCCC------------------------C
Confidence 3456899999999999999998 67 78888 7766666 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhh-HHhhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTT-RSRVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t-~sr~~~~~~v 659 (926)
-. +...+ .+.|.++.....|=.+|+|+.-. ..-+|+.+-+
T Consensus 198 ~~--~~~~l-------~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 198 PQ--GVKEI-------LEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred HH--HHHHH-------HHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 44 45555 67788887655565566999764 4447766544
No 168
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.95 E-value=0.13 Score=49.84 Aligned_cols=75 Identities=19% Similarity=0.069 Sum_probs=51.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||..++||..|+. +| +|..+ ||-.+-+ |.
T Consensus 128 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 164 (214)
T cd03297 128 YPAQLSGGEKQRVALARALAA---QP------ELLLL----------DEPFSAL------------------------DR 164 (214)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 346899999999999999886 66 78888 7744444 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
. +...+ .+.|.+++.. .-|=.+++|+.-.... .|+.+-
T Consensus 165 ~--~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (214)
T cd03297 165 A--LRLQL-------LPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV 204 (214)
T ss_pred H--HHHHH-------HHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEE
Confidence 3 44455 5677777665 4455555999876644 565543
No 169
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.95 E-value=0.13 Score=52.60 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||..+-+ |-.
T Consensus 135 ~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~gL------------------------D~~ 171 (275)
T PRK13639 135 PHHLSGGQKKRVAIAGILAM---KP------EIIVL----------DEPTSGL------------------------DPM 171 (275)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CHH
Confidence 45899999999999999876 66 88888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ -++|.++....-|=.+|+|+...-.+ +|+.+-+
T Consensus 172 --~~~~l-------~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 172 --GASQI-------MKLLYDLNKEGITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred --HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 44455 56677776654454555999876655 6766544
No 170
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.94 E-value=0.11 Score=53.16 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=55.2
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||.+++||-.|+. +| ++..+ ||..+-+ |-.
T Consensus 139 ~~LSgGq~qrv~lAral~~---~p------~lLlL----------DEPt~~L------------------------D~~- 174 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAM---RP------KIIIL----------DEATSML------------------------DPE- 174 (279)
T ss_pred ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------CHH-
Confidence 6899999999999999988 77 78888 8877777 444
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|+.-.....|+.+-+
T Consensus 175 -~~~~l-------~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l 213 (279)
T PRK13650 175 -GRLEL-------IKTIKGIRDDYQMTVISITHDLDEVALSDRVLVM 213 (279)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence 45555 5667777764 44555669998776667776544
No 171
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=91.93 E-value=0.14 Score=50.89 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=55.7
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| ++..+ ||..+.+ |..
T Consensus 129 ~~lS~G~~qrl~laral~~---~p------~llll----------DEP~~~L------------------------D~~- 164 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAV---EP------QVLLL----------DEPFGAL------------------------DAK- 164 (237)
T ss_pred hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH-
Confidence 5899999999999999887 66 78888 7776666 555
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhH-Hhhhhhccee
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTR-SRVQSSLTIQ 660 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~-sr~~~~~~v~ 660 (926)
+...+ -..|.++... ..|=.+++|++-.. .-.|+.+-+.
T Consensus 165 -~~~~~-------~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~ 205 (237)
T TIGR00968 165 -VRKEL-------RSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS 205 (237)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence 56666 5678888765 45556669999864 4478776553
No 172
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=91.93 E-value=0.13 Score=54.32 Aligned_cols=75 Identities=16% Similarity=0.072 Sum_probs=51.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||+++|||..++. +| ++..+ ||--+-+ |..
T Consensus 98 ~~~LSgGq~qRvalaraL~~---~p------~lllL----------DEP~s~L------------------------D~~ 134 (325)
T TIGR01187 98 PHQLSGGQQQRVALARALVF---KP------KILLL----------DEPLSAL------------------------DKK 134 (325)
T ss_pred hhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCccC------------------------CHH
Confidence 46899999999999999986 66 78888 7755555 333
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|||+.....+ .|+.+-+
T Consensus 135 --~~~~l-------~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl 174 (325)
T TIGR01187 135 --LRDQM-------QLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174 (325)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 34444 5667777665 3455666999876444 5766543
No 173
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=91.89 E-value=0.13 Score=54.82 Aligned_cols=75 Identities=16% Similarity=0.043 Sum_probs=51.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.++|||..|+. +| ++..+ ||-.+-+ |..
T Consensus 129 ~~~LSgGqkqRvalAraL~~---~p------~lllL----------DEPts~L------------------------D~~ 165 (354)
T TIGR02142 129 PGRLSGGEKQRVAIGRALLS---SP------RLLLM----------DEPLAAL------------------------DDP 165 (354)
T ss_pred hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCCcCC------------------------CHH
Confidence 36899999999999999886 67 78888 7755555 433
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ ...|.++... .-|=.+|+|++-.... .|+.+-+
T Consensus 166 --~~~~l-------~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l 205 (354)
T TIGR02142 166 --RKYEI-------LPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVL 205 (354)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 34444 5667777665 3455556999876554 5765444
No 174
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=91.89 E-value=0.11 Score=51.81 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=29.1
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
...+..||||||.++++|.+||+..+.. .|+..+
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~-----p~llll 154 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTR-----CPFRVV 154 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccC-----CCEEEE
Confidence 3456799999999999999999888777 688888
No 175
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.89 E-value=0.12 Score=57.24 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=55.2
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||++|+||..|+. +| .|..+ ||-.+-| |
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~---~p------~llll----------DEPt~~L------------------------D 188 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLT---RP------ELLIA----------DEPTTAL------------------------D 188 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCcc------------------------C
Confidence 4567999999999999999985 77 78888 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .++|.+++.. .-|=.+|+|+.-...+ +|+.+-+
T Consensus 189 ~~--~~~~l-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 189 VS--VQAQI-------LQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred HH--HHHHH-------HHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 44 45555 5678887664 4555566999866544 5776544
No 176
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=91.88 E-value=0.15 Score=50.55 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=52.0
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||.+++||..++. +| +|..+ ||-.+-+ |..
T Consensus 151 ~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~~-- 185 (252)
T CHL00131 151 GFSGGEKKRNEILQMALL---DS------ELAIL----------DETDSGL------------------------DID-- 185 (252)
T ss_pred CCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------CHH--
Confidence 599999999999999886 66 78888 7755555 444
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~~v 659 (926)
+...+ .+.|.++....-|=.+|+|++-.... .|+.+-+
T Consensus 186 ~~~~l-------~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l 225 (252)
T CHL00131 186 ALKII-------AEGINKLMTSENSIILITHYQRLLDYIKPDYVHVM 225 (252)
T ss_pred HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEE
Confidence 55556 56788887655565555898776665 4665544
No 177
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.86 E-value=0.12 Score=49.82 Aligned_cols=72 Identities=11% Similarity=0.010 Sum_probs=51.1
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
+||||||.+++||..++. +| ++..+ ||-.+-+ |-.
T Consensus 108 ~LSgGe~qrv~la~al~~---~p------~vlll----------DEP~~~L------------------------D~~-- 142 (192)
T cd03232 108 GLSVEQRKRLTIGVELAA---KP------SILFL----------DEPTSGL------------------------DSQ-- 142 (192)
T ss_pred cCCHHHhHHHHHHHHHhc---CC------cEEEE----------eCCCcCC------------------------CHH--
Confidence 899999999999998887 55 78888 7766666 444
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChh--hHHhhhhhcc
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT--TRSRVQSSLT 658 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~--t~sr~~~~~~ 658 (926)
+...+ ...|.+++...-|=++|+|++- ....+|+.+-
T Consensus 143 ~~~~l-------~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~ 181 (192)
T cd03232 143 AAYNI-------VRFLKKLADSGQAILCTIHQPSASIFEKFDRLLL 181 (192)
T ss_pred HHHHH-------HHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEE
Confidence 45555 5567777765455556699975 2566776543
No 178
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=91.84 E-value=0.15 Score=50.40 Aligned_cols=76 Identities=13% Similarity=0.039 Sum_probs=50.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||..++. +| ++..+ ||-.+-+ |.
T Consensus 134 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 170 (241)
T PRK10895 134 MGQSLSGGERRRVEIARALAA---NP------KFILL----------DEPFAGV------------------------DP 170 (241)
T ss_pred chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 346899999999999998876 55 78888 6655555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v 659 (926)
. +...+ .++|.++....-|=.+++|++-.. .-+|+.+-+
T Consensus 171 ~--~~~~l-------~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l 210 (241)
T PRK10895 171 I--SVIDI-------KRIIEHLRDSGLGVLITDHNVRETLAVCERAYIV 210 (241)
T ss_pred H--HHHHH-------HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 3 33344 456777766555656669998544 345665444
No 179
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.77 E-value=0.13 Score=56.67 Aligned_cols=76 Identities=9% Similarity=0.059 Sum_probs=53.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||++++||..|+. +| +|..+ ||-.+=+ |.
T Consensus 140 ~~~~LSgGqkqrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D~ 176 (506)
T PRK13549 140 PVGNLGLGQQQLVEIAKALNK---QA------RLLIL----------DEPTASL------------------------TE 176 (506)
T ss_pred chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CH
Confidence 457899999999999999985 67 78888 7754444 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.....|=.+|+|+.-.... +|+.+-+
T Consensus 177 ~--~~~~l-------~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 177 S--ETAVL-------LDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence 4 44444 56777876554565666999876655 5776544
No 180
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.75 E-value=0.15 Score=57.23 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=53.0
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||=.+.- +| |+..+ ||--+-+ |..
T Consensus 474 ~~LSgGqrqRialARall~---~~------~ilil----------DE~ts~l------------------------D~~- 509 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLH---DA------PLLLL----------DEPTEGL------------------------DAE- 509 (574)
T ss_pred CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence 4799999999999976653 55 89999 7755555 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.++ .+.|.+... ..|-.+|+|.+-+...+|+.+-+
T Consensus 510 -t~~~i-------~~~l~~~~~-~~tviiitHr~~~~~~~d~i~~l 546 (574)
T PRK11160 510 -TERQI-------LELLAEHAQ-NKTVLMITHRLTGLEQFDRICVM 546 (574)
T ss_pred -HHHHH-------HHHHHHHcC-CCEEEEEecChhHHHhCCEEEEE
Confidence 33444 344555543 46888889999999999998766
No 181
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.75 E-value=0.12 Score=52.21 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=54.3
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||..+-+ |..
T Consensus 140 ~~~LS~G~~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D~~ 176 (269)
T PRK13648 140 PNALSGGQKQRVAIAGVLAL---NP------SVIIL----------DEATSML------------------------DPD 176 (269)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 45899999999999998887 66 88888 8877666 554
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ ...|.++... .-|=.+|+|++-....+|+.+-+
T Consensus 177 --~~~~l-------~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l 215 (269)
T PRK13648 177 --ARQNL-------LDLVRKVKSEHNITIISITHDLSEAMEADHVIVM 215 (269)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEE
Confidence 45555 5667777654 44555569998766667766544
No 182
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=91.73 E-value=0.14 Score=54.35 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||++++||..++. +| .|..+ ||-..-| |..
T Consensus 152 p~~LSgGq~QRv~iArAL~~---~P------~lLil----------DEPts~L------------------------D~~ 188 (327)
T PRK11308 152 PHMFSGGQRQRIAIARALML---DP------DVVVA----------DEPVSAL------------------------DVS 188 (327)
T ss_pred CccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCCccC------------------------CHH
Confidence 46999999999999999988 77 67777 7765555 433
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ -++|.++... .-|=.+|||+.-...+ .|+.+-+
T Consensus 189 --~~~~i-------~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm 228 (327)
T PRK11308 189 --VQAQV-------LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228 (327)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 33333 5567777665 3455556999888876 5666543
No 183
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.72 E-value=0.13 Score=52.02 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=52.0
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| +|..+ ||-.+-+ |..
T Consensus 126 ~~~LSgGq~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D~~ 162 (255)
T PRK11248 126 IWQLSGGQRQRVGIARALAA---NP------QLLLL----------DEPFGAL------------------------DAF 162 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence 46899999999999999885 66 78888 7755555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... ..|=.+|+|++-...+ +|+.+-+
T Consensus 163 --~~~~l-------~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 163 --TREQM-------QTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 55556 6677777543 4454555999876655 4665433
No 184
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=91.68 E-value=0.15 Score=57.54 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=54.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||-.|.- +| |+..+ ||--+-+ |..
T Consensus 470 ~~LSgGq~qrl~lARall~---~p------~ilil----------DEpts~L------------------------D~~- 505 (585)
T TIGR01192 470 NRLSGGERQRLAIARAILK---NA------PILVL----------DEATSAL------------------------DVE- 505 (585)
T ss_pred CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCccCC------------------------CHH-
Confidence 4699999999999987774 55 89999 7765555 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ .+.|.++.. ..|-.+|+|++-+...+|+.+-+
T Consensus 506 -~~~~i-------~~~l~~~~~-~~tvI~isH~~~~~~~~d~i~~l 542 (585)
T TIGR01192 506 -TEARV-------KNAIDALRK-NRTTFIIAHRLSTVRNADLVLFL 542 (585)
T ss_pred -HHHHH-------HHHHHHHhC-CCEEEEEEcChHHHHcCCEEEEE
Confidence 44444 455666543 56777779999999999998766
No 185
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=91.67 E-value=0.12 Score=54.86 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=52.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..|+. +| +|..+ ||-.+-| |.
T Consensus 137 ~~~~LSgGq~qRv~lAraL~~---~p------~iLlL----------DEPts~L------------------------D~ 173 (343)
T PRK11153 137 YPAQLSGGQKQRVAIARALAS---NP------KVLLC----------DEATSAL------------------------DP 173 (343)
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 346899999999999998886 67 78888 7755444 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .++|.++... .-|=.+++|+.-...+ +|+.+-+
T Consensus 174 ~--~~~~l-------~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 174 A--TTRSI-------LELLKDINRELGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 44444 6678888765 3455555898876554 6766544
No 186
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.66 E-value=0.16 Score=52.22 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=55.8
Q ss_pred ccccCchhHHHHHHHHHHHHHh------ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIW------KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPN 605 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQ------KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~ 605 (926)
.+.+||||||.+++||..|+.. ..+| ++..+ ||-.+-+
T Consensus 142 ~~~~LSgG~~qrv~laral~~~~~~~~~~~~p------~lllL----------DEPt~~L-------------------- 185 (272)
T PRK13547 142 DVTTLSGGELARVQFARVLAQLWPPHDAAQPP------RYLLL----------DEPTAAL-------------------- 185 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccccCCCC------CEEEE----------cCccccC--------------------
Confidence 4568999999999999888752 1466 77788 7755555
Q ss_pred CCCCCCCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 606 PNPNSRANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 606 ~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
|-. +..++ .+.|.++... .-|=.+|+|++-...+ +|+.+-+
T Consensus 186 ----D~~--~~~~l-------~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 186 ----DLA--HQHRL-------LDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred ----CHH--HHHHH-------HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 444 56666 6778888765 4565666999877654 6766544
No 187
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=91.62 E-value=0.14 Score=52.96 Aligned_cols=76 Identities=14% Similarity=-0.002 Sum_probs=53.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |-
T Consensus 132 ~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~gL------------------------D~ 168 (303)
T TIGR01288 132 RVALLSGGMKRRLTLARALIN---DP------QLLIL----------DEPTTGL------------------------DP 168 (303)
T ss_pred chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence 346899999999999999875 66 78888 6655555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+++|+.--... +|+.+-+
T Consensus 169 ~--~~~~l-------~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l 208 (303)
T TIGR01288 169 H--ARHLI-------WERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 208 (303)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 3 44455 67788887655565666999876654 5765544
No 188
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.60 E-value=0.16 Score=50.15 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=54.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||-.+-+ |-
T Consensus 134 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 170 (225)
T PRK10247 134 NIAELSGGEKQRISLIRNLQF---MP------KVLLL----------DEITSAL------------------------DE 170 (225)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 345899999999999998886 55 78888 7765555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhccee
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTIQ 660 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v~ 660 (926)
. +...+ .+.|.++... ..|=.+++|+.-....+|+.+-+.
T Consensus 171 ~--~~~~l-------~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 171 S--NKHNV-------NEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 4 55555 5667887664 445555589886666677766553
No 189
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.59 E-value=0.13 Score=52.78 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=55.4
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||-.|+. +| +|..+ ||..+-+ |-+
T Consensus 138 ~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~gL------------------------D~~ 174 (279)
T PRK13635 138 PHRLSGGQKQRVAIAGVLAL---QP------DIIIL----------DEATSML------------------------DPR 174 (279)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 35899999999999999887 66 78888 7766666 544
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|++-....+|+.+-+
T Consensus 175 --~~~~l-------~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l 213 (279)
T PRK13635 175 --GRREV-------LETVRQLKEQKGITVLSITHDLDEAAQADRVIVM 213 (279)
T ss_pred --HHHHH-------HHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEE
Confidence 45555 6678888765 45556669998777777776554
No 190
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=91.56 E-value=0.17 Score=56.05 Aligned_cols=74 Identities=20% Similarity=0.151 Sum_probs=54.1
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+.+|||=.+.- +| |+..+ ||--+=+ |..
T Consensus 453 ~~LSgGq~qrl~lARall~---~~------~ilil----------DEpts~L------------------------D~~- 488 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYG---DP------KLVVL----------DEPNSNL------------------------DEE- 488 (544)
T ss_pred CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccc------------------------CHH-
Confidence 5799999999999976632 45 89999 7744444 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.++ .+.|.++.....|-.+|+|++-+...+|+.+-+
T Consensus 489 -~~~~i-------~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l 526 (544)
T TIGR01842 489 -GEQAL-------ANAIKALKARGITVVVITHRPSLLGCVDKILVL 526 (544)
T ss_pred -HHHHH-------HHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 55555 455666654457888889999999889987655
No 191
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.56 E-value=0.16 Score=49.19 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=50.6
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||.+++||..++. +| ++..+ ||-.+-+ |..
T Consensus 111 ~LS~G~~qrv~laral~~---~p------~illl----------DEP~~~L------------------------D~~-- 145 (194)
T cd03213 111 GLSGGERKRVSIALELVS---NP------SLLFL----------DEPTSGL------------------------DSS-- 145 (194)
T ss_pred cCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCcCC------------------------CHH--
Confidence 799999999999998886 66 78888 7766666 444
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChh--hHHhhhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT--TRSRVQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~--t~sr~~~~~~v 659 (926)
+...+ ...|.++....-|=.+++|++- -....|+.+-+
T Consensus 146 ~~~~l-------~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 146 SALQV-------MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred HHHHH-------HHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEE
Confidence 33444 5567777655556566699874 33446766543
No 192
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=91.54 E-value=0.15 Score=52.80 Aligned_cols=74 Identities=9% Similarity=-0.046 Sum_probs=51.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |-
T Consensus 121 ~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~gL------------------------D~ 157 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIH---QP------DVLFL----------DEPTTGL------------------------DP 157 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence 456899999999999998876 66 78888 6644444 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
. +...+ .+.|.++....-|=.+++|+.-...+ +|+.+
T Consensus 158 ~--~~~~l-------~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~ 195 (302)
T TIGR01188 158 R--TRRAI-------WDYIRALKEEGVTILLTTHYMEEADKLCDRIA 195 (302)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 3 44455 67788887665565555998876655 56544
No 193
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.51 E-value=0.18 Score=50.11 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=52.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..++. +| +|..+ ||-.+-+ |.
T Consensus 145 ~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 181 (252)
T PRK14255 145 SALSLSGGQQQRVCIARVLAV---KP------DVILL----------DEPTSAL------------------------DP 181 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CH
Confidence 456999999999999999887 66 68888 6655555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .|=.+|+|++-.... +|+.+-+
T Consensus 182 ~--~~~~l-------~~~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 182 I--SSTQI-------ENMLLELRDQ-YTIILVTHSMHQASRISDKTAFF 220 (252)
T ss_pred H--HHHHH-------HHHHHHHHhC-CEEEEEECCHHHHHHhCCEEEEE
Confidence 4 44555 5677777653 455555999876544 6776544
No 194
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.50 E-value=0.19 Score=51.20 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=53.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 150 ~~~~~LS~G~~qrl~laral~~---~p------~lllL----------DEPt~gL------------------------D 186 (269)
T PRK14259 150 ESGYSLSGGQQQRLCIARTIAI---EP------EVILM----------DEPCSAL------------------------D 186 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------C
Confidence 3456899999999999998886 66 88888 7766666 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhccee
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTIQ 660 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v~ 660 (926)
.. +..++ .+.|.++.. .-|=.+|+|++-.. .-.|+.+-+.
T Consensus 187 ~~--~~~~l-------~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 187 PI--STLKI-------EETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred HH--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 44 55556 677888854 34545558987544 4456665443
No 195
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=91.50 E-value=0.16 Score=55.58 Aligned_cols=76 Identities=7% Similarity=0.030 Sum_probs=54.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||++++||..|+. +| ++..+ ||-.+=+ |.
T Consensus 131 ~~~~LSgGq~qrv~lA~al~~---~p------~lllL----------DEPt~~L------------------------D~ 167 (491)
T PRK10982 131 KVATLSVSQMQMIEIAKAFSY---NA------KIVIM----------DEPTSSL------------------------TE 167 (491)
T ss_pred chhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCCCC------------------------CH
Confidence 467899999999999999886 66 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.+++....|=.+|+|++--..+ +|+.+-+
T Consensus 168 ~--~~~~l-------~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l 207 (491)
T PRK10982 168 K--EVNHL-------FTIIRKLKERGCGIVYISHKMEEIFQLCDEITIL 207 (491)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4 45555 56678887655565555998876554 5666544
No 196
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.49 E-value=0.17 Score=49.18 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=53.8
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||..++||..++. +| +|..+ ||--+-+ |..
T Consensus 103 ~~LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~~- 138 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLL---EP------DLAIL----------DEPDSGL------------------------DID- 138 (200)
T ss_pred ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH-
Confidence 6899999999999999885 56 78888 7755555 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~~v 659 (926)
+...+ .+.|.++....-|=.+++|++-.... .|+.+-+
T Consensus 139 -~~~~l-------~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 178 (200)
T cd03217 139 -ALRLV-------AEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVL 178 (200)
T ss_pred -HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEE
Confidence 55566 67788876544455556999887764 5776555
No 197
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.48 E-value=0.21 Score=55.05 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=53.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| +|..+ ||--+-+ |
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~---~p------~lLlL----------DEPt~~L------------------------D 441 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCC---CP------EVIIF----------DEPTRGI------------------------D 441 (510)
T ss_pred CccccCChHHHHHHHHHHHHhc---CC------CEEEE----------CCCCCCc------------------------C
Confidence 4567899999999999999885 56 88998 7744444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.++....-|=.+|+|++--... .|+.+-+
T Consensus 442 ~~--~~~~l-------~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 442 VG--AKAEI-------YKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred HH--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 44 45555 56788877665565555999765544 4655433
No 198
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.48 E-value=0.15 Score=50.56 Aligned_cols=76 Identities=17% Similarity=0.091 Sum_probs=52.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~---~p------~llll----------DEP~~~L------------------------D 178 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAV---EP------EVILL----------DEPTSAL------------------------D 178 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCcccc------------------------C
Confidence 3456899999999999999887 56 78888 7766655 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +..-+ .+.|.+++. ..|=.+|+|++-.... .|+.+-+
T Consensus 179 ~~--~~~~l-------~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 179 PI--ATQRI-------EKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred HH--HHHHH-------HHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEE
Confidence 44 44444 566777765 3455566999876544 6666443
No 199
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=91.45 E-value=0.2 Score=49.78 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=52.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||..+-+ |.
T Consensus 143 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~ 179 (250)
T PRK14240 143 SALGLSGGQQQRLCIARALAV---EP------EVLLM----------DEPTSAL------------------------DP 179 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 456899999999999999887 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.. ..|=.+|+|+.-.... .|+.+-+
T Consensus 180 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 180 I--STLKI-------EELIQELKK-DYTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred H--HHHHH-------HHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEE
Confidence 4 44444 566777754 3465666998765444 5665444
No 200
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.42 E-value=0.17 Score=61.33 Aligned_cols=78 Identities=23% Similarity=0.114 Sum_probs=60.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
+.+..|||||+++++||..++. +| . .++++ ||-.+=|
T Consensus 483 r~~~tLSGGE~QRv~LA~aL~~---~~-----~~~llIL----------DEPtagL------------------------ 520 (924)
T TIGR00630 483 RAAGTLSGGEAQRIRLATQIGS---GL-----TGVLYVL----------DEPSIGL------------------------ 520 (924)
T ss_pred CCcCcCCHHHHHHHHHHHHHhh---CC-----CCcEEEE----------cCCccCC------------------------
Confidence 5678999999999999988875 33 2 48888 7766655
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.. ...++ .+.|.++....+|=.+|+|++-.+..+|+.+-+
T Consensus 521 D~~--~~~~L-------~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~L 561 (924)
T TIGR00630 521 HQR--DNERL-------INTLKRLRDLGNTVIVVEHDEETIRAADYVIDI 561 (924)
T ss_pred CHH--HHHHH-------HHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEe
Confidence 444 56677 677888887788888889999988888887655
No 201
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.42 E-value=0.17 Score=52.12 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=55.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||.+++||-.++. +| +|..+ ||..+.+ |
T Consensus 141 ~~~~~LSgGq~qrv~laraL~~---~p------~illl----------DEPt~~L------------------------D 177 (286)
T PRK13646 141 QSPFQMSGGQMRKIAIVSILAM---NP------DIIVL----------DEPTAGL------------------------D 177 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccC------------------------C
Confidence 3456899999999999999998 77 78888 7766666 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ .++|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus 178 ~~--~~~~l-------~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l 219 (286)
T PRK13646 178 PQ--SKRQV-------MRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM 219 (286)
T ss_pred HH--HHHHH-------HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 44 44555 6678887654 4455666999876655 4776554
No 202
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.41 E-value=0.14 Score=56.62 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=55.1
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||..|+. +| +|..+ ||-.+-+ |
T Consensus 421 ~~~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D 457 (529)
T PRK15134 421 RYPAEFSGGQRQRIAIARALIL---KP------SLIIL----------DEPTSSL------------------------D 457 (529)
T ss_pred cCCccCCHHHHHHHHHHHHHhC---CC------CEEEe----------eCCcccc------------------------C
Confidence 3456899999999999999985 66 88999 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .++|.+++.. ..|=.+|+|+.-.... +|+.+-+
T Consensus 458 ~~--~~~~l-------~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l 499 (529)
T PRK15134 458 KT--VQAQI-------LALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL 499 (529)
T ss_pred HH--HHHHH-------HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 44 55555 6778888765 4454555999876655 6766544
No 203
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=91.40 E-value=0.17 Score=50.42 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=52.0
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..++. +| ++..+ ||-.+-+ |-.
T Consensus 145 ~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~~- 180 (252)
T TIGR03005 145 AQLSGGQQQRVAIARALAM---RP------KVMLF----------DEVTSAL------------------------DPE- 180 (252)
T ss_pred hhcCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence 5899999999999998875 66 67888 7766666 433
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|++-... -+|+.+-+
T Consensus 181 -~~~~l-------~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 181 -LVGEV-------LNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF 220 (252)
T ss_pred -HHHHH-------HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 44555 6678887764 345455599987654 46766543
No 204
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.39 E-value=0.17 Score=56.29 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=55.9
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||++.|||=.|- +. +||.++ ||--+-+ |..
T Consensus 464 ~~LSgGQrQrlaiARall----~~-----~~ILIL----------DEaTSal------------------------D~~- 499 (567)
T COG1132 464 VNLSGGQRQRLAIARALL----RN-----PPILIL----------DEATSAL------------------------DTE- 499 (567)
T ss_pred ccCCHHHHHHHHHHHHHh----cC-----CCEEEE----------ecccccc------------------------CHH-
Confidence 379999999999997664 34 489999 7755555 333
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee---eecCCCC
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ---SAEQGSP 667 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~---~aE~G~~ 667 (926)
+-... ++-+.++.. ..|-++|.|++-|....|+.+=+. ..|.|.+
T Consensus 500 -tE~~I-------~~~l~~l~~-~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h 547 (567)
T COG1132 500 -TEALI-------QDALKKLLK-GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTH 547 (567)
T ss_pred -hHHHH-------HHHHHHHhc-CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCH
Confidence 22222 333444443 258899999999999999987552 4566665
No 205
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.38 E-value=0.18 Score=51.32 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=51.0
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| +|..+ ||-.+-+ |-.
T Consensus 158 ~~~LS~Gq~qrv~lAral~~---~p------~illL----------DEPt~~L------------------------D~~ 194 (269)
T cd03294 158 PDELSGGMQQRVGLARALAV---DP------DILLM----------DEAFSAL------------------------DPL 194 (269)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CHH
Confidence 35899999999999999885 66 78888 7755555 333
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... ..|=.+++|+.-...+ .|+.+-+
T Consensus 195 --~~~~l-------~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l 234 (269)
T cd03294 195 --IRREM-------QDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM 234 (269)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 34444 5667777654 3455555999876554 5665544
No 206
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=91.36 E-value=0.17 Score=56.59 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=53.4
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||-.+.- +| ||..+ ||-.+-+ |..
T Consensus 469 ~~LSgGq~qRlalaRall~---~~------~ilil----------DE~ts~L------------------------D~~- 504 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLE---DR------PILLF----------DEWAADQ------------------------DPA- 504 (555)
T ss_pred ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------CHH-
Confidence 6899999999999975543 55 89999 7766666 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+. ..++.++.....|-.+|+|++-+...+|+.+-+
T Consensus 505 -~~~~i~------~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l 543 (555)
T TIGR01194 505 -FKRFFY------EELLPDLKRQGKTIIIISHDDQYFELADQIIKL 543 (555)
T ss_pred -HHHHHH------HHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEE
Confidence 444441 113344444567888889999999999988765
No 207
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=91.33 E-value=0.15 Score=51.47 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=53.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| +|..+ ||-.+-+ |.
T Consensus 147 ~~~~LSgGe~qrv~laral~~---~p------~illL----------DEPt~~L------------------------D~ 183 (265)
T TIGR02769 147 LPRQLSGGQLQRINIARALAV---KP------KLIVL----------DEAVSNL------------------------DM 183 (265)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 445899999999999988875 66 78888 7755555 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+|+|++..... +|+.+-+
T Consensus 184 ~--~~~~l-------~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l 224 (265)
T TIGR02769 184 V--LQAVI-------LELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVM 224 (265)
T ss_pred H--HHHHH-------HHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEE
Confidence 3 34444 5567777654 4565666999877664 6776655
No 208
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.28 E-value=0.14 Score=60.23 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
-..||||||+..|||-.|-- +| +|-.+ ||=-+-+ |.
T Consensus 607 G~~LSGGQrQrlalARaLl~---~P------~ILlL----------DEaTSaL------------------------D~- 642 (709)
T COG2274 607 GANLSGGQRQRLALARALLS---KP------KILLL----------DEATSAL------------------------DP- 642 (709)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CC------CEEEE----------eCccccc------------------------CH-
Confidence 35799999999999987644 78 88898 7755555 22
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~ 657 (926)
+-++. .++-|.++... .|+++|+|++-|-.++|+.+
T Consensus 643 --~sE~~------I~~~L~~~~~~-~T~I~IaHRl~ti~~adrIi 678 (709)
T COG2274 643 --ETEAI------ILQNLLQILQG-RTVIIIAHRLSTIRSADRII 678 (709)
T ss_pred --hHHHH------HHHHHHHHhcC-CeEEEEEccchHhhhccEEE
Confidence 33333 15556666654 89999999999999999966
No 209
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.27 E-value=0.19 Score=47.72 Aligned_cols=73 Identities=22% Similarity=0.127 Sum_probs=51.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| ++..+ ||-.+-+ |-.
T Consensus 96 ~~~LS~G~~qrv~laral~~---~p------~~lll----------DEP~~~L------------------------D~~ 132 (178)
T cd03247 96 GRRFSGGERQRLALARILLQ---DA------PIVLL----------DEPTVGL------------------------DPI 132 (178)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC------------------------CHH
Confidence 77899999999999998885 66 78888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~ 658 (926)
....+ .+.|.++.. .-|=.+++|++-.....|+.+-
T Consensus 133 --~~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~ 168 (178)
T cd03247 133 --TERQL-------LSLIFEVLK-DKTLIWITHHLTGIEHMDKILF 168 (178)
T ss_pred --HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHhCCEEEE
Confidence 44445 455666643 3455556999887776666543
No 210
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.24 E-value=0.17 Score=55.71 Aligned_cols=77 Identities=6% Similarity=0.029 Sum_probs=54.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++|+||..|+. +| +|..+ ||-.+=+ |
T Consensus 141 ~~~~~LSgG~~qrv~ia~al~~---~p------~lllL----------DEPt~~L------------------------D 177 (510)
T PRK09700 141 EKVANLSISHKQMLEIAKTLML---DA------KVIIM----------DEPTSSL------------------------T 177 (510)
T ss_pred cchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------C
Confidence 3456899999999999999986 67 78888 7755555 5
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .++|.+++...-|=.+|+|+.-.... +|+.+-+
T Consensus 178 ~~--~~~~l-------~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l 218 (510)
T PRK09700 178 NK--EVDYL-------FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM 218 (510)
T ss_pred HH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44 55566 67788887654454555998766554 5665544
No 211
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.22 E-value=0.19 Score=47.74 Aligned_cols=70 Identities=20% Similarity=0.089 Sum_probs=48.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
...+||||||.+++||-.++. +| ++..+ ||-.+-+ |.
T Consensus 88 ~~~~LS~G~~~rv~laral~~---~p------~~lll----------DEPt~~L------------------------D~ 124 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLH---KP------KFVFL----------DEATSAL------------------------DE 124 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccc------------------------CH
Confidence 467899999999999988875 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhh
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSS 656 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~ 656 (926)
. +..++ .+.|.++ ..|-.+|+|++....-.|+.
T Consensus 125 ~--~~~~l-------~~~l~~~---~~tiiivsh~~~~~~~~d~i 157 (166)
T cd03223 125 E--SEDRL-------YQLLKEL---GITVISVGHRPSLWKFHDRV 157 (166)
T ss_pred H--HHHHH-------HHHHHHh---CCEEEEEeCChhHHhhCCEE
Confidence 4 45555 4455555 24556669998766555554
No 212
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=91.22 E-value=0.16 Score=51.85 Aligned_cols=75 Identities=19% Similarity=0.047 Sum_probs=51.3
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 131 ~~~LSgGqkqrl~laraL~~---~p------~lllL----------DEPt~~L------------------------D~~ 167 (257)
T PRK11247 131 PAALSGGQKQRVALARALIH---RP------GLLLL----------DEPLGAL------------------------DAL 167 (257)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CHH
Confidence 46899999999999999986 56 78888 7755555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|++-.... +|+.+-+
T Consensus 168 --~~~~l-------~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l 207 (257)
T PRK11247 168 --TRIEM-------QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLI 207 (257)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 34444 4566676543 4565666999876544 5666544
No 213
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.17 E-value=0.21 Score=49.72 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=52.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-..-+ |.
T Consensus 144 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~ 180 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIAV---KP------DVILM----------DEPTSAL------------------------DP 180 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999999985 66 78888 7755555 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++... .|-.+|+|++-.... .|+.+-+
T Consensus 181 ~--~~~~l-------~~~L~~~~~~-~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 181 I--STLKI-------EDLMVELKKE-YTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred H--HHHHH-------HHHHHHHHhC-CeEEEEEcCHHHHHHhcCEEEEE
Confidence 3 44445 5677777653 565666999876444 6776655
No 214
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.17 E-value=0.19 Score=49.87 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=52.5
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..++- +| ++..+ ||-.+.+ |-.
T Consensus 128 ~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~gL------------------------D~~- 163 (235)
T cd03299 128 ETLSGGEQQRVAIARALVV---NP------KILLL----------DEPFSAL------------------------DVR- 163 (235)
T ss_pred ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------CCCcccC------------------------CHH-
Confidence 5799999999999988876 66 67788 7766666 444
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
+...+ .+.|.+++.. ..|-.+++|++-... -.|+.+-+
T Consensus 164 -~~~~l-------~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l 203 (235)
T cd03299 164 -TKEKL-------REELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM 203 (235)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 55556 6677777664 445555699987644 46766544
No 215
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.16 E-value=0.18 Score=50.03 Aligned_cols=76 Identities=8% Similarity=0.001 Sum_probs=53.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| +|..+ ||...-+ |-
T Consensus 150 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~ 186 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVT---QP------EILML----------DEPAAGL------------------------NP 186 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCccCC------------------------CH
Confidence 446899999999999998887 66 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+++|+.-.... +|+.+-+
T Consensus 187 ~--~~~~l-------~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 227 (255)
T PRK11300 187 K--ETKEL-------DELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227 (255)
T ss_pred H--HHHHH-------HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 45555 6778888765 3354555898876655 5665544
No 216
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=91.16 E-value=0.2 Score=48.77 Aligned_cols=74 Identities=18% Similarity=0.101 Sum_probs=50.7
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+. +| +|..+ ||-.+-+ |-.
T Consensus 127 ~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D~~- 162 (213)
T TIGR01277 127 EQLSGGQRQRVALARCLVR---PN------PILLL----------DEPFSAL------------------------DPL- 162 (213)
T ss_pred ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CHH-
Confidence 4899999999999999885 55 78888 7766655 444
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
+...+ ...|.++... .-|=.+|+|+.-... -.|+.+-+
T Consensus 163 -~~~~~-------~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l 202 (213)
T TIGR01277 163 -LREEM-------LALVKQLCSERQRTLLMVTHHLSDARAIASQIAVV 202 (213)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEE
Confidence 34444 5677787764 334455588876544 46766554
No 217
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.15 E-value=0.18 Score=49.40 Aligned_cols=74 Identities=12% Similarity=0.012 Sum_probs=51.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||..++||..++. +| ++..+ ||-.+.+ |.
T Consensus 128 ~~~~LS~G~~qrv~la~al~~---~p------~illl----------DEPt~~L------------------------D~ 164 (230)
T TIGR03410 128 RGGDLSGGQQQQLAIARALVT---RP------KLLLL----------DEPTEGI------------------------QP 164 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CH
Confidence 345799999999999998886 55 78888 7765555 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
. +...+ ..+|.++... .-|=.+++|+.-.... .|+.+
T Consensus 165 ~--~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 203 (230)
T TIGR03410 165 S--IIKDI-------GRVIRRLRAEGGMAILLVEQYLDFARELADRYY 203 (230)
T ss_pred H--HHHHH-------HHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEE
Confidence 3 44444 5677787764 4565666999876665 45544
No 218
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.14 E-value=0.18 Score=49.40 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=49.7
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 135 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 171 (214)
T PRK13543 135 VRQLSAGQKKRLALARLWLS---PA------PLWLL----------DEPYANL------------------------DLE 171 (214)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 46799999999999999987 66 78888 7655545 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSL 657 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~ 657 (926)
+...+ ...|.++.....|=++++|+.-....+ ++.+
T Consensus 172 --~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 172 --GITLV-------NRMISAHLRGGGAALVTTHGAYAAPPVRTRML 208 (214)
T ss_pred --HHHHH-------HHHHHHHHhCCCEEEEEecChhhhhhhcceEE
Confidence 44455 567777766655645558887655433 4443
No 219
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=91.14 E-value=0.26 Score=56.34 Aligned_cols=71 Identities=15% Similarity=0.091 Sum_probs=50.4
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||=.|.= +| ||..+ ||--+-+ |..
T Consensus 614 ~~LSGGQrQRiaLARall~---~p------~iliL----------DEptS~L------------------------D~~- 649 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVR---NP------SILIL----------DEATSAL------------------------DPE- 649 (710)
T ss_pred CCCCHHHHHHHHHHHHHhh---CC------CEEEE----------ECccccC------------------------CHH-
Confidence 5799999999999976642 44 89999 7755444 333
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.++ .+.|. ....|..+|+|++-+...+|+.+-+
T Consensus 650 -te~~i-------~~~l~---~~~~T~IiitHrl~~i~~~D~Iivl 684 (710)
T TIGR03796 650 -TEKII-------DDNLR---RRGCTCIIVAHRLSTIRDCDEIIVL 684 (710)
T ss_pred -HHHHH-------HHHHH---hcCCEEEEEecCHHHHHhCCEEEEE
Confidence 22333 12222 2467999999999999999998766
No 220
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=91.11 E-value=0.18 Score=50.98 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=53.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| .+..+ ||-..-+ |-
T Consensus 140 ~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~gL------------------------D~ 176 (265)
T PRK10253 140 SVDTLSGGQRQRAWIAMVLAQ---ET------AIMLL----------DEPTTWL------------------------DI 176 (265)
T ss_pred CcccCChHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence 457999999999999999886 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~~v 659 (926)
. +...+ ...|.++... .-|=.+++|++-. +.-+|+.+-+
T Consensus 177 ~--~~~~l-------~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l 217 (265)
T PRK10253 177 S--HQIDL-------LELLSELNREKGYTLAAVLHDLNQACRYASHLIAL 217 (265)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 55555 6677787664 3344444999864 4557777555
No 221
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.09 E-value=0.21 Score=54.97 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=53.9
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| .|..+ ||--+-+ |
T Consensus 401 ~~~~~LSgG~kqrv~lA~al~~---~p------~lllL----------DEPt~~L------------------------D 437 (506)
T PRK13549 401 LAIARLSGGNQQKAVLAKCLLL---NP------KILIL----------DEPTRGI------------------------D 437 (506)
T ss_pred cccccCCHHHHHHHHHHHHHhh---CC------CEEEE----------cCCCCCc------------------------C
Confidence 4557999999999999999986 67 78888 6644444 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
-. +...+ .++|.++.....|=.+|+|..-...+ +|+.+-
T Consensus 438 ~~--~~~~l-------~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~ 477 (506)
T PRK13549 438 VG--AKYEI-------YKLINQLVQQGVAIIVISSELPEVLGLSDRVLV 477 (506)
T ss_pred Hh--HHHHH-------HHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence 33 44455 66788887765564555999876655 577543
No 222
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=91.09 E-value=0.19 Score=50.36 Aligned_cols=77 Identities=13% Similarity=-0.029 Sum_probs=53.2
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+....||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D 183 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVT---HP------RLVFM----------DEPTGGL------------------------D 183 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------C
Confidence 3446899999999999998875 56 78888 7766666 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.++... .-|=.+|+|+.-...+ +|+.+-+
T Consensus 184 ~~--~~~~l-------~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l 225 (258)
T PRK11701 184 VS--VQARL-------LDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225 (258)
T ss_pred HH--HHHHH-------HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 44 44555 5566776654 3444455999888775 6765443
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=91.08 E-value=0.23 Score=54.64 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=54.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| ++..+ ||-.+=+ |
T Consensus 136 ~~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D 172 (501)
T PRK11288 136 TPLKYLSIGQRQMVEIAKALAR---NA------RVIAF----------DEPTSSL------------------------S 172 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------cCCCCCC------------------------C
Confidence 3456899999999999999987 66 78888 7755545 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.++.....|=.+|+|++....+ +|+.+-+
T Consensus 173 ~~--~~~~l-------~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l 213 (501)
T PRK11288 173 AR--EIEQL-------FRVIRELRAEGRVILYVSHRMEEIFALCDAITVF 213 (501)
T ss_pred HH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44 45555 56777876655565555999876554 5765543
No 224
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.08 E-value=0.17 Score=48.83 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=50.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 128 ~~~LS~G~~qr~~laral~~---~p------~llll----------DEPt~~L------------------------D~~ 164 (213)
T cd03301 128 PKQLSGGQRQRVALGRAIVR---EP------KVFLM----------DEPLSNL------------------------DAK 164 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 35899999999999998875 66 78888 7755555 433
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ .+.|.++... ..|=.+++|++-.... .|+.+-
T Consensus 165 --~~~~l-------~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 203 (213)
T cd03301 165 --LRVQM-------RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAV 203 (213)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence 44444 5677777764 4454555998865544 465443
No 225
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.04 E-value=0.25 Score=49.28 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=52.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||-.|+. +| ++..+ ||-..-+ |-
T Consensus 145 ~~~~LS~G~~qrl~laral~~---~p------~llll----------DEP~~gL------------------------D~ 181 (252)
T PRK14256 145 NAMELSGGQQQRLCIARTIAV---KP------EVILM----------DEPASAL------------------------DP 181 (252)
T ss_pred CcCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 456899999999999998875 66 78888 6655555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
. +...+ ...|.++... -|=.+|+|++-... -+|+.+-+
T Consensus 182 ~--~~~~l-------~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 182 I--STLKI-------EELIEELKEK-YTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred H--HHHHH-------HHHHHHHHhC-CcEEEEECCHHHHHhhCCEEEEE
Confidence 3 44444 6678888653 46566699987654 46776654
No 226
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.97 E-value=0.2 Score=50.37 Aligned_cols=75 Identities=13% Similarity=0.093 Sum_probs=52.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |.
T Consensus 151 ~~~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 187 (258)
T PRK14268 151 PALSLSGGQQQRLCIARTLAV---KP------KIILF----------DEPTSAL------------------------DP 187 (258)
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccc------------------------CH
Confidence 456899999999999998887 66 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.. .-|=.+|+|++-...+ +|+.+-+
T Consensus 188 ~--~~~~l-------~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l 226 (258)
T PRK14268 188 I--STARI-------EDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFF 226 (258)
T ss_pred H--HHHHH-------HHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 3 44444 566777754 3454555999876555 5766544
No 227
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.92 E-value=0.17 Score=52.22 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=54.6
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||.+++||-.++. +| +|..+ ||..+-| |
T Consensus 141 ~~~~~LSgGq~qrv~lAraL~~---~P------~llll----------DEPt~~L------------------------D 177 (290)
T PRK13634 141 RSPFELSGGQMRRVAIAGVLAM---EP------EVLVL----------DEPTAGL------------------------D 177 (290)
T ss_pred CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------C
Confidence 3456899999999999999986 77 78888 7766666 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ -+.|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus 178 ~~--~~~~l-------~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l 219 (290)
T PRK13634 178 PK--GRKEM-------MEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM 219 (290)
T ss_pred HH--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44 44445 5667777664 4565666999877655 5665544
No 228
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.89 E-value=0.23 Score=51.18 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=53.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |-
T Consensus 142 ~~~~LSgGq~qrl~laral~~---~p------~lLlL----------DEPt~gL------------------------D~ 178 (287)
T PRK13641 142 SPFELSGGQMRRVAIAGVMAY---EP------EILCL----------DEPAAGL------------------------DP 178 (287)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCCCCC------------------------CH
Confidence 466899999999999999988 67 78888 7755555 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus 179 ~--~~~~l-------~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l 218 (287)
T PRK13641 179 E--GRKEM-------MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL 218 (287)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 45555 66778876543444445898776544 5766555
No 229
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.89 E-value=0.17 Score=51.92 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=53.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||.+++||..++. +| ++..+ ||-.+-+ |..
T Consensus 142 ~~LS~G~~qrv~laral~~---~P------~llll----------DEPt~gL------------------------D~~- 177 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAV---EP------KIIIL----------DESTSML------------------------DPA- 177 (282)
T ss_pred ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------CHH-
Confidence 6999999999999999887 67 77888 7765555 544
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+++|+.-....+|+.+-+
T Consensus 178 -~~~~l-------~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l 216 (282)
T PRK13640 178 -GKEQI-------LKLIRKLKKKNNLTVISITHDIDEANMADQVLVL 216 (282)
T ss_pred -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence 45555 6677777764 33444559998777667776544
No 230
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.83 E-value=0.23 Score=48.36 Aligned_cols=73 Identities=12% Similarity=-0.048 Sum_probs=48.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| .+..+ ||-.+-+ |.
T Consensus 137 ~~~~LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~ 173 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQ---NT------NIVFL----------DDPFSAL------------------------DI 173 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCcccc------------------------CH
Confidence 356899999999999999887 66 67777 7766655 43
Q ss_pred CCCchhhhhhcccCCCC--ChhhhccCCCceeEeecChhhHHhhhhh
Q psy834 612 ANPNLSRRAQANNSAQN--PLPEVSSSPNTRSRVQSSPTTRSRVQSS 656 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~--~l~e~~~~~~tr~~v~~~~~t~sr~~~~ 656 (926)
. +...+ .+ ++..+....-|=++++|.+......|+.
T Consensus 174 ~--~~~~l-------~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i 211 (218)
T cd03290 174 H--LSDHL-------MQEGILKFLQDDKRTLVLVTHKLQYLPHADWI 211 (218)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCCEEEEEeCChHHHhhCCEE
Confidence 3 33333 22 3444444444556669998776655554
No 231
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.82 E-value=0.19 Score=55.60 Aligned_cols=77 Identities=8% Similarity=-0.021 Sum_probs=55.1
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 136 ~~~~~LSgG~~qrv~la~aL~~---~p------~lllL----------DEPt~~L------------------------D 172 (510)
T PRK15439 136 SSAGSLEVADRQIVEILRGLMR---DS------RILIL----------DEPTASL------------------------T 172 (510)
T ss_pred CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCCCCC------------------------C
Confidence 3567899999999999999986 67 78888 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.+++...-|=.+|+|+.-.... +|+.+-+
T Consensus 173 ~~--~~~~l-------~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 173 PA--ETERL-------FSRIRELLAQGVGIVFISHKLPEIRQLADRISVM 213 (510)
T ss_pred HH--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44 55666 67788887654454455998876554 5776544
No 232
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=90.78 E-value=0.2 Score=57.29 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
-..||||||+++|||=.|.= +| ||..+ ||--+-+ |..
T Consensus 609 G~~LSgGQrQRialARall~---~p------~iliL----------DE~Ts~L------------------------D~~ 645 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLT---DS------KVLIL----------DESTSNL------------------------DTI 645 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCccccC------------------------CHH
Confidence 35799999999999876653 55 89999 7766655 443
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.++ .+.|.++ ...|..+|+|++-+...+|+.+-+
T Consensus 646 --te~~i-------~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l 681 (708)
T TIGR01193 646 --TEKKI-------VNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVL 681 (708)
T ss_pred --HHHHH-------HHHHHHh--cCCEEEEEecchHHHHcCCEEEEE
Confidence 33444 3334444 246888889999999999998766
No 233
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=90.75 E-value=0.19 Score=55.01 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=54.2
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||++++||..|+. +| .|..+ ||-.+=+ |.
T Consensus 138 ~~~~LSgG~~qrv~iA~al~~---~p------~lllL----------DEPt~~L------------------------D~ 174 (500)
T TIGR02633 138 PVGDYGGGQQQLVEIAKALNK---QA------RLLIL----------DEPSSSL------------------------TE 174 (500)
T ss_pred chhhCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCCCCC------------------------CH
Confidence 456899999999999999987 67 68888 7744444 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.+++...-|=.+|+|+.-.... +|+.+-+
T Consensus 175 ~--~~~~l-------~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 175 K--ETEIL-------LDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence 4 45555 56778887655565666999776554 5776654
No 234
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.75 E-value=0.21 Score=60.57 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=60.9
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||+.++||..|+....+| +|+.+ ||-..-|
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p------~llIL----------DEPtsgL------------------------ 862 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSKRSTGR------TLYIL----------DEPTTGL------------------------ 862 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCC------CEEEE----------ECCCCCC------------------------
Confidence 3568899999999999999988543445 78899 8866666
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|-. ++.++ .+.|.++.....|=++|+|++-.+...|+.+-+
T Consensus 863 D~~--~~~~L-------~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~L 903 (924)
T TIGR00630 863 HFD--DIKKL-------LEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDL 903 (924)
T ss_pred CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 544 66677 667788876677777779999888777765433
No 235
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.74 E-value=0.25 Score=50.53 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=54.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~~---~p------~lllL----------DEPt~~L------------------------D 193 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIAM---KP------DVLLM----------DEPCSAL------------------------D 193 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCcccC------------------------C
Confidence 3456899999999999999875 66 78888 7766666 5
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ .++|.++.. .-|=.+++|++-...+ +|+.+=+
T Consensus 194 ~~--~~~~l-------~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 233 (274)
T PRK14265 194 PI--STRQV-------EELCLELKE-QYTIIMVTHNMQQASRVADWTAFF 233 (274)
T ss_pred HH--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44 56666 677888865 3455555999866554 5766544
No 236
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.74 E-value=0.19 Score=51.09 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=52.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||-.+-+ |.
T Consensus 117 ~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~ 153 (251)
T PRK09544 117 PMQKLSGGETQRVLLARALLN---RP------QLLVL----------DEPTQGV------------------------DV 153 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence 357899999999999998876 66 78888 7766555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~ 658 (926)
. +...+ .+.|.++... .-|=.+|+|+.-... -+|+.+-
T Consensus 154 ~--~~~~l-------~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~ 193 (251)
T PRK09544 154 N--GQVAL-------YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLC 193 (251)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 3 34444 6677777664 445555589987754 4676653
No 237
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.65 E-value=0.23 Score=47.18 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=47.9
Q ss_pred CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834 536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN 615 (926)
Q Consensus 536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N 615 (926)
||||||.+++||..++. +| ++..+ ||--+-+ |.. +
T Consensus 97 LS~G~~qrv~la~al~~---~p------~~lll----------DEPt~~L------------------------D~~--~ 131 (173)
T cd03246 97 LSGGQRQRLGLARALYG---NP------RILVL----------DEPNSHL------------------------DVE--G 131 (173)
T ss_pred cCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccc------------------------CHH--H
Confidence 99999999999998886 56 78888 7765555 444 3
Q ss_pred hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834 616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~ 657 (926)
...+ .+.|.++....-|=.+|+|+.-...-+|+.+
T Consensus 132 ~~~l-------~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~ 166 (173)
T cd03246 132 ERAL-------NQAIAALKAAGATRIVIAHRPETLASADRIL 166 (173)
T ss_pred HHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 4444 4566677654445455599887665555543
No 238
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.64 E-value=0.29 Score=54.18 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=54.6
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..++. +| +|..+ ||--+=+ |
T Consensus 399 ~~~~~LSgG~kqrl~la~al~~---~p------~lLlL----------DEPt~gL------------------------D 435 (510)
T PRK15439 399 QAARTLSGGNQQKVLIAKCLEA---SP------QLLIV----------DEPTRGV------------------------D 435 (510)
T ss_pred CccccCCcHHHHHHHHHHHHhh---CC------CEEEE----------CCCCcCc------------------------C
Confidence 4567999999999999999886 66 78888 6644444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ .+.|.++.....|=.+|+|++-...+ +|+.+-+
T Consensus 436 ~~--~~~~l-------~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l 476 (510)
T PRK15439 436 VS--ARNDI-------YQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM 476 (510)
T ss_pred hh--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 44 55555 66777777665554555999877765 4665544
No 239
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=90.59 E-value=0.19 Score=51.15 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=54.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| .|..+ ||-.+-+ |-
T Consensus 148 ~~~~LS~Ge~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D~ 184 (268)
T PRK10419 148 RPPQLSGGQLQRVCLARALAV---EP------KLLIL----------DEAVSNL------------------------DL 184 (268)
T ss_pred CCccCChHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccc------------------------CH
Confidence 345899999999999999987 66 67777 6655545 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+|+|++-.... +|+.+-+
T Consensus 185 ~--~~~~~-------~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 185 V--LQAGV-------IRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred H--HHHHH-------HHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 3 45555 5678888764 4455666999887766 5776554
No 240
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.56 E-value=0.28 Score=48.87 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=52.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.++|||-.|+. +| +|..+ ||-.+-+ |-
T Consensus 139 ~~~~LS~G~~qrv~laral~~---~p------~lllL----------DEP~~~L------------------------D~ 175 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAI---KP------KLLLL----------DEPTSAL------------------------DP 175 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 345899999999999998887 66 88888 7766666 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.. .-|=.+|+|+.-...+ +|+.+-+
T Consensus 176 ~--~~~~l-------~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 176 I--SSGVI-------EELLKELSH-NLSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred H--HHHHH-------HHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEE
Confidence 3 44555 456667654 4455556999875544 5665544
No 241
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.55 E-value=0.25 Score=49.27 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=51.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |.
T Consensus 146 ~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 182 (251)
T PRK14244 146 SAFELSGGQQQRLCIARAIAV---KP------TMLLM----------DEPCSAL------------------------DP 182 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 456899999999999998885 66 78888 7755545 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.. ..|=.+|+|++-.... +|+.+-+
T Consensus 183 ~--~~~~l-------~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 183 V--ATNVI-------ENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEE
Confidence 3 34444 566777754 3455566999887554 6766544
No 242
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=90.54 E-value=0.25 Score=48.73 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=53.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| ++..+ ||-.+-+ |-
T Consensus 110 ~~~~LS~G~~qrv~laral~~---~p------~llil----------DEP~~~L------------------------D~ 146 (223)
T TIGR03771 110 PVGELSGGQRQRVLVARALAT---RP------SVLLL----------DEPFTGL------------------------DM 146 (223)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 345799999999999998887 55 88888 7766655 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
. +...+ .+.|.++.....|=.+++|+.-...+ +|+.+
T Consensus 147 ~--~~~~l-------~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~ 184 (223)
T TIGR03771 147 P--TQELL-------TELFIELAGAGTAILMTTHDLAQAMATCDRVV 184 (223)
T ss_pred H--HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 55566 56677777655555566999876655 56654
No 243
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.53 E-value=0.25 Score=49.16 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=51.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |-
T Consensus 144 ~~~~LS~Gq~qr~~laral~~---~p------~llll----------DEP~~~L------------------------D~ 180 (251)
T PRK14251 144 NAQAFSGGQQQRICIARALAV---RP------KVVLL----------DEPTSAL------------------------DP 180 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCCccC------------------------CH
Confidence 456999999999999988875 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
. +...+ ...|.++.. ..|=.+|+|++-.... +|+.+-
T Consensus 181 ~--~~~~l-------~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 181 I--SSSEI-------EETLMELKH-QYTFIMVTHNLQQAGRISDQTAF 218 (251)
T ss_pred H--HHHHH-------HHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEE
Confidence 4 44455 556666654 3465666999977555 576543
No 244
>PRK13409 putative ATPase RIL; Provisional
Probab=90.46 E-value=0.2 Score=57.43 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=54.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||+++|||..++. +| +|..+ ||-.+-| |
T Consensus 449 ~~~~~LSGGe~QRvaiAraL~~---~p------~llLL----------DEPt~~L------------------------D 485 (590)
T PRK13409 449 KNVKDLSGGELQRVAIAACLSR---DA------DLYLL----------DEPSAHL------------------------D 485 (590)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------C
Confidence 4567999999999999999885 45 89999 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +.... .++|.+++.. .-|=++|+|......+ .|+.+-+
T Consensus 486 ~~--~~~~l-------~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 486 VE--QRLAV-------AKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 33 33444 5678888664 4566777999876655 5665544
No 245
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=90.46 E-value=0.19 Score=53.44 Aligned_cols=74 Identities=12% Similarity=0.045 Sum_probs=50.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||++++||..|+. +| .|..+ ||-..-| |-.
T Consensus 159 p~~LSgG~~QRv~iArAL~~---~P------~llil----------DEPts~L------------------------D~~ 195 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALIL---EP------KLIIC----------DEPVSAL------------------------DVS 195 (331)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence 45899999999999999987 77 77787 6755555 332
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+-..+ -++|.++... .-|=.+|||+.-...+ .|+.+-
T Consensus 196 --~~~~i-------~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 196 --IQAQV-------VNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 22222 4567777654 3455555999887776 566543
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=90.44 E-value=0.29 Score=49.66 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=51.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |-
T Consensus 148 ~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~ 184 (264)
T PRK14243 148 SGLSLSGGQQQRLCIARAIAV---QP------EVILM----------DEPCSAL------------------------DP 184 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 456899999999999999986 77 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.+++.. .|=.+++|++-...+ +|+.+-+
T Consensus 185 ~--~~~~l-------~~~L~~~~~~-~tvi~vtH~~~~~~~~~d~v~~l 223 (264)
T PRK14243 185 I--STLRI-------EELMHELKEQ-YTIIIVTHNMQQAARVSDMTAFF 223 (264)
T ss_pred H--HHHHH-------HHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEE
Confidence 4 44555 6677777653 454555999876544 4665443
No 247
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.41 E-value=0.27 Score=54.15 Aligned_cols=76 Identities=14% Similarity=0.007 Sum_probs=53.2
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..++. +| +|..+ ||--+=+ |
T Consensus 391 ~~~~~LSgGekqrv~lA~al~~---~p------~lllL----------DEPt~~L------------------------D 427 (501)
T PRK10762 391 QAIGLLSGGNQQKVAIARGLMT---RP------KVLIL----------DEPTRGV------------------------D 427 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHhh---CC------CEEEE----------cCCCCCC------------------------C
Confidence 3456899999999999999986 66 78998 7755444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
.. +...+ .+.|.++.....|=.+|+|+.-...+ .|+.+-
T Consensus 428 ~~--~~~~l-------~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~ 467 (501)
T PRK10762 428 VG--AKKEI-------YQLINQFKAEGLSIILVSSEMPEVLGMSDRILV 467 (501)
T ss_pred Hh--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE
Confidence 44 55566 66788887654454444999776655 355443
No 248
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=90.37 E-value=0.25 Score=56.46 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=54.3
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
...||||||+++|||=.+. .+| ||..+ ||--+-+ |..
T Consensus 591 g~~LSgGq~qri~lARall---~~~------~ilil----------DEpts~L------------------------D~~ 627 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALV---GNP------RILIF----------DEATSAL------------------------DYE 627 (694)
T ss_pred CCCCCHHHHHHHHHHHHHH---hCC------CEEEE----------ECCCcCC------------------------CHH
Confidence 3579999999999998774 255 89999 7765555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ .+.|.++. ...|-.+|+|++-+...+|+.+-+
T Consensus 628 --~~~~i-------~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l 664 (694)
T TIGR01846 628 --SEALI-------MRNMREIC-RGRTVIIIAHRLSTVRACDRIIVL 664 (694)
T ss_pred --HHHHH-------HHHHHHHh-CCCEEEEEeCChHHHHhCCEEEEE
Confidence 44445 45566664 346777889999999999997766
No 249
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.36 E-value=0.26 Score=50.56 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=53.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||..+-+ |.
T Consensus 160 ~~~~LSgGq~qrl~LAral~~---~p------~lllL----------DEPt~~L------------------------D~ 196 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLAV---NP------EVLLL----------DEPTSAL------------------------DP 196 (276)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 456899999999999999875 66 78888 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
. +...+ ...|.++... .|=.+|+|+.-... -+|+.+-+
T Consensus 197 ~--~~~~l-------~~~L~~~~~~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 197 T--TTEKI-------EEFIRSLADR-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred H--HHHHH-------HHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 45555 5667777653 45566699987644 46766554
No 250
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=90.32 E-value=0.29 Score=53.89 Aligned_cols=78 Identities=15% Similarity=0.033 Sum_probs=55.6
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||.+++||..|+. +| .|..+ ||=-.-+
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~~---~p------~lllL----------DEPt~~L------------------------ 427 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLSE---DM------KVILL----------DEPTRGI------------------------ 427 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHcc---CC------CEEEE----------cCCCCCC------------------------
Confidence 34567999999999999998874 56 78888 6643333
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
|-. +...+ .++|.++.....|=.+|+|+.-...+ +|+.+-+
T Consensus 428 D~~--~~~~l-------~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l 469 (501)
T PRK11288 428 DVG--AKHEI-------YNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM 469 (501)
T ss_pred CHh--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence 444 55555 67788888776675566999877655 4666544
No 251
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=90.29 E-value=0.22 Score=49.95 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=52.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..++. +| +|..+ ||..+-+ |.
T Consensus 137 ~~~~LS~Gq~qrv~laral~~---~p------~lLlL----------DEPt~~L------------------------D~ 173 (254)
T PRK10418 137 YPFEMSGGMLQRMMIALALLC---EA------PFIIA----------DEPTTDL------------------------DV 173 (254)
T ss_pred CCcccCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccc------------------------CH
Confidence 456899999999999999885 66 78888 7766666 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++... .-|=.+++|++-.... +|+.+-+
T Consensus 174 ~--~~~~l-------~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 174 V--AQARI-------LDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred H--HHHHH-------HHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence 3 44444 5667777654 3344455898877654 5765443
No 252
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.24 E-value=0.3 Score=49.21 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=52.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||..++. +| +|..+ ||-.+-+ |.
T Consensus 153 ~~~~LS~Gq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~ 189 (260)
T PRK10744 153 SGYSLSGGQQQRLCIARGIAI---RP------EVLLL----------DEPCSAL------------------------DP 189 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHHC---CC------CEEEE----------cCCCccC------------------------CH
Confidence 456899999999999999986 66 88898 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++.. .-|=.+++|++-.... +|+.+-+
T Consensus 190 ~--~~~~l-------~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 190 I--STGRI-------EELITELKQ-DYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 4 44555 556777754 2354444999876654 5665444
No 253
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=90.20 E-value=0.28 Score=49.35 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=51.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||..++. +| ++..+ ||-..-+ |.
T Consensus 149 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~ 185 (262)
T PRK09984 149 RVSTLSGGQQQRVAIARALMQ---QA------KVILA----------DEPIASL------------------------DP 185 (262)
T ss_pred CccccCHHHHHHHHHHHHHhc---CC------CEEEe----------cCccccC------------------------CH
Confidence 446899999999999999886 66 67777 6655555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+++|++-- +.-.|+.+-+
T Consensus 186 ~--~~~~l-------~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l 226 (262)
T PRK09984 186 E--SARIV-------MDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226 (262)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 44555 5567777654 3344444899864 5556665544
No 254
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.15 E-value=0.34 Score=48.13 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=51.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| +|..+ ||..+-+ |-
T Consensus 143 ~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEP~~gL------------------------D~ 179 (250)
T PRK14266 143 SALGLSGGQQQRLCIARTIAV---SP------EVILM----------DEPCSAL------------------------DP 179 (250)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCCccC------------------------CH
Confidence 356899999999999999886 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhh
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQS 655 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~ 655 (926)
. +...+ ...|.++.. .-|=.+|+|+.-....+..
T Consensus 180 ~--~~~~l-------~~~l~~~~~-~~tiii~sh~~~~~~~~~~ 213 (250)
T PRK14266 180 I--STTKI-------EDLIHKLKE-DYTIVIVTHNMQQATRVSK 213 (250)
T ss_pred H--HHHHH-------HHHHHHHhc-CCeEEEEECCHHHHHhhcC
Confidence 4 44555 666777754 3455556999887766554
No 255
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=90.15 E-value=0.27 Score=49.35 Aligned_cols=79 Identities=16% Similarity=0.072 Sum_probs=52.8
Q ss_pred ccccCchhHHHHHHHHHHHHHh----ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIW----KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN 607 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQ----KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~ 607 (926)
.+..||||||.+++||..|+.. ..+| ++..+ ||-.+-+
T Consensus 123 ~~~~LS~G~~qrv~la~al~~~~~~~~p~p------~llll----------DEPt~~L---------------------- 164 (248)
T PRK03695 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAG------QLLLL----------DEPMNSL---------------------- 164 (248)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccCCCC------CEEEE----------cCCcccC----------------------
Confidence 3468999999999999988852 2244 67888 7766655
Q ss_pred CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChh-hHHhhhhhcce
Q psy834 608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT-TRSRVQSSLTI 659 (926)
Q Consensus 608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~-t~sr~~~~~~v 659 (926)
|-. +...+ .++|.++....-|=.+++|+.- ...-.|+.+-+
T Consensus 165 --D~~--~~~~l-------~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 206 (248)
T PRK03695 165 --DVA--QQAAL-------DRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLL 206 (248)
T ss_pred --CHH--HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 444 44455 5678888765455455588876 44556766544
No 256
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=90.14 E-value=0.19 Score=55.46 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=54.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..++. +| +|..+ ||-.+-+ |
T Consensus 423 ~~~~~LSgGq~qrv~laral~~---~p------~lLll----------DEPt~~L------------------------D 459 (520)
T TIGR03269 423 KYPDELSEGERHRVALAQVLIK---EP------RIVIL----------DEPTGTM------------------------D 459 (520)
T ss_pred CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------C
Confidence 4567999999999999998875 66 78888 7755555 5
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.++... .-|=.+|+|+.-...+ +|+.+-+
T Consensus 460 ~~--~~~~l-------~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l 501 (520)
T TIGR03269 460 PI--TKVDV-------THSILKAREEMEQTFIIVSHDMDFVLDVCDRAALM 501 (520)
T ss_pred HH--HHHHH-------HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 55 55556 6677777654 3454555999876665 5666544
No 257
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.13 E-value=0.29 Score=50.55 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=51.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||..++. +| +|..+ ||-.+-+ |.
T Consensus 177 ~~~~LSgGe~qrv~LAraL~~---~p------~lLLL----------DEPts~L------------------------D~ 213 (285)
T PRK14254 177 SGLDLSGGQQQRLCIARAIAP---DP------EVILM----------DEPASAL------------------------DP 213 (285)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCCC------------------------CH
Confidence 456899999999999999875 66 78888 7766555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhh
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSS 656 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~ 656 (926)
. +...+ .+.|.++... .|=.+++|++-...+ +|+.
T Consensus 214 ~--~~~~l-------~~~L~~~~~~-~tiii~tH~~~~i~~~~dri 249 (285)
T PRK14254 214 V--ATSKI-------EDLIEELAEE-YTVVIVTHNMQQAARISDKT 249 (285)
T ss_pred H--HHHHH-------HHHHHHHhcC-CEEEEEeCCHHHHHhhcCEE
Confidence 4 55555 5667777654 454555999877655 4553
No 258
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.03 E-value=0.26 Score=46.67 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=51.1
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
+||||||.+++||..++. +| ++..+ ||-.+-+ |..
T Consensus 82 qLS~G~~qrl~laral~~---~p------~illl----------DEP~~~L------------------------D~~-- 116 (163)
T cd03216 82 QLSVGERQMVEIARALAR---NA------RLLIL----------DEPTAAL------------------------TPA-- 116 (163)
T ss_pred ecCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCcCC------------------------CHH--
Confidence 399999999999988876 66 78888 7766666 544
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++.....|=.+++|+.-.... .|+.+-+
T Consensus 117 ~~~~l-------~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 117 EVERL-------FKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 55566 66777776554454555898876554 5665443
No 259
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=89.95 E-value=0.22 Score=53.74 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=50.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||+++|||..++. +| +|..+ ||--+-| |..
T Consensus 131 ~~~LSgGq~QRvaLAraL~~---~P------~lLLL----------DEPts~L------------------------D~~ 167 (369)
T PRK11000 131 PKALSGGQRQRVAIGRTLVA---EP------SVFLL----------DEPLSNL------------------------DAA 167 (369)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 45899999999999999986 67 78888 6644444 333
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhH-Hhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTR-SRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~-sr~~~~~~v 659 (926)
+-..+ .+.|.++... .-|=.+|||+.-.. .-.|+.+-+
T Consensus 168 --~~~~l-------~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl 207 (369)
T PRK11000 168 --LRVQM-------RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207 (369)
T ss_pred --HHHHH-------HHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 33344 4567777664 34555569998654 445766544
No 260
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=89.93 E-value=0.33 Score=43.45 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=29.9
Q ss_pred EeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCC
Q psy834 523 CTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 523 VSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
....++....+..||.|+|.++ +|+.+|+.... . .+... ||.+.=|
T Consensus 224 ~~~~~~~~~~~~~~S~G~~~~l--~l~~~l~~~~~-----~~~illi----------DEpE~~L 270 (303)
T PF13304_consen 224 KIKGDGKEIPLSSLSSGEKRLL--SLLSLLLSAKK-----NGSILLI----------DEPENHL 270 (303)
T ss_dssp EETTEEEEGGGS---HHHHHHH--HHHHHHHTTTT-----T-SEEEE----------ESSSTTS
T ss_pred EEcCCCeEEeeccCCHHHHHHH--HHHHHHhCcCC-----CCeEEEe----------cCCcCCC
Confidence 3344556789999999999996 55555555554 3 67777 8888877
No 261
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=89.87 E-value=0.26 Score=54.32 Aligned_cols=77 Identities=10% Similarity=0.051 Sum_probs=52.9
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||..|+. +| ++..+ ||-.+-+ |
T Consensus 137 ~~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D 173 (501)
T PRK10762 137 KLVGELSIGEQQMVEIAKVLSF---ES------KVIIM----------DEPTDAL------------------------T 173 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcCCC------------------------C
Confidence 3466899999999999999986 66 78888 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .++|.++....-|=.+|+|+.--... +|+.+-+
T Consensus 174 ~~--~~~~l-------~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l 214 (501)
T PRK10762 174 DT--ETESL-------FRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF 214 (501)
T ss_pred HH--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 43 34444 55677776554454445998765544 5776655
No 262
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=89.86 E-value=0.29 Score=56.60 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=49.2
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||+++|||=.+. +. +||..+ ||-.+-+ |..
T Consensus 616 ~~LSGGQkQRlalARALl----~~-----p~ILIL----------DEpTSaL------------------------D~~- 651 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALV----RK-----PRVLIL----------DEATSAL------------------------DAE- 651 (711)
T ss_pred CcCCHHHHHHHHHHHHHh----cC-----CCEEEE----------Ecccccc------------------------CHH-
Confidence 579999999999987654 34 489999 7766666 332
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
.+..-+. ... ....|-.+|+|++-+..++|+.+-+
T Consensus 652 --te~~i~~-------~~~--~~~~TvIiItHrl~~i~~aD~IivL 686 (711)
T TIGR00958 652 --CEQLLQE-------SRS--RASRTVLLIAHRLSTVERADQILVL 686 (711)
T ss_pred --HHHHHHH-------hhc--cCCCeEEEEeccHHHHHhCCEEEEE
Confidence 2222121 111 2346888889999999999998766
No 263
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=89.81 E-value=0.22 Score=55.39 Aligned_cols=74 Identities=12% Similarity=0.001 Sum_probs=52.3
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||-.|.- +| |+..+ ||-.+-+ |..
T Consensus 448 ~~LSgGq~qRl~lARal~~---~~------~ilil----------DE~ts~L------------------------D~~- 483 (547)
T PRK10522 448 LKLSKGQKKRLALLLALAE---ER------DILLL----------DEWAADQ------------------------DPH- 483 (547)
T ss_pred CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------CHH-
Confidence 4799999999999987653 55 89999 8877766 444
Q ss_pred CchhhhhhcccCCCCChh-hhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLP-EVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~-e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ .+.|. .+.....|-.+|+|++-++..+|+.+-+
T Consensus 484 -~~~~i-------~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l 522 (547)
T PRK10522 484 -FRREF-------YQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEM 522 (547)
T ss_pred -HHHHH-------HHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEE
Confidence 33333 22222 2222356888889999999999988765
No 264
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.81 E-value=0.34 Score=48.18 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=51.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| +|..+ ||-.+-+ |.
T Consensus 142 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~ 178 (249)
T PRK14253 142 HAFGLSGGQQQRLCIARTIAM---EP------DVILM----------DEPTSAL------------------------DP 178 (249)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 456899999999999998875 66 68888 6655444 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ -+.|.+++.. .|=.+|+|++-.... +|+.+-+
T Consensus 179 ~--~~~~l-------~~~l~~~~~~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 179 I--ATHKI-------EELMEELKKN-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred H--HHHHH-------HHHHHHHhcC-CeEEEEecCHHHHHHhCCEEEEE
Confidence 3 44444 4567777653 454555999877555 6766544
No 265
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=89.81 E-value=0.28 Score=52.35 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=49.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.++|||..++. +| ++..+ ||--+-+ |..
T Consensus 126 ~~~LSgGq~qRvalaraL~~---~p------~llLL----------DEPts~L------------------------D~~ 162 (352)
T PRK11144 126 PGSLSGGEKQRVAIGRALLT---AP------ELLLM----------DEPLASL------------------------DLP 162 (352)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 36899999999999999986 67 67777 6644444 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCC-CceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSP-NTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~-~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++.... -|=.+|||++-...+ .|+.+-+
T Consensus 163 --~~~~l-------~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l 202 (352)
T PRK11144 163 --RKREL-------LPYLERLAREINIPILYVSHSLDEILRLADRVVVL 202 (352)
T ss_pred --HHHHH-------HHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEE
Confidence 33444 55677776653 344555999865444 5665443
No 266
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.76 E-value=0.3 Score=49.30 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=50.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||..++. +| ++..+ ||-.+-+ |.
T Consensus 147 ~~~~LSgGq~qrv~laral~~---~p------~vllL----------DEP~~~L------------------------D~ 183 (261)
T PRK14258 147 SALDLSGGQQQRLCIARALAV---KP------KVLLM----------DEPCFGL------------------------DP 183 (261)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 456899999999999999874 56 78888 6655444 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhh-hhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRV-QSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~-~~~~~ 658 (926)
. +...+ ...|.+++.. ..|=.+|+|++.....+ |+.+-
T Consensus 184 ~--~~~~l-------~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~ 223 (261)
T PRK14258 184 I--ASMKV-------ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAF 223 (261)
T ss_pred H--HHHHH-------HHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEE
Confidence 3 33444 5667777543 44555669998766543 55443
No 267
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=89.72 E-value=0.27 Score=54.01 Aligned_cols=71 Identities=21% Similarity=0.146 Sum_probs=49.5
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||=-|.- +| ++..+ ||--+-+ |..
T Consensus 457 ~~LSgGq~qri~laRal~~---~~------~ilil----------DE~ts~l------------------------D~~- 492 (529)
T TIGR02857 457 AGLSGGQAQRLALARAFLR---DA------PLLLL----------DEPTAHL------------------------DAE- 492 (529)
T ss_pred ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccc------------------------CHH-
Confidence 4799999999999875543 44 88888 7765555 333
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~ 657 (926)
+-.+. .+.|.++. ...|...|+|++-+...+|+.+
T Consensus 493 -~~~~i-------~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 493 -TEALV-------TEALRALA-QGRTVLLVTHRLALAERADRIV 527 (529)
T ss_pred -HHHHH-------HHHHHHhc-CCCEEEEEecCHHHHHhCCEEE
Confidence 33444 34455543 3468888899999998888754
No 268
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.65 E-value=0.26 Score=48.67 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=54.1
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..|+- +| +|..+ ||..+-+ |..
T Consensus 129 ~~lS~G~~qrl~laral~~---~p------~llll----------DEP~~gL------------------------D~~- 164 (232)
T cd03300 129 SQLSGGQQQRVAIARALVN---EP------KVLLL----------DEPLGAL------------------------DLK- 164 (232)
T ss_pred hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH-
Confidence 5999999999999998887 66 78888 7766666 444
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+++|++-. +.-+|+.+-+
T Consensus 165 -~~~~l-------~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l 204 (232)
T cd03300 165 -LRKDM-------QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVM 204 (232)
T ss_pred -HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 44455 5667777764 4566777999876 4557877554
No 269
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.55 E-value=0.21 Score=52.93 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=46.8
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNP 606 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~ 606 (926)
.|......+||||||+.||||=-+|+ +| .+... ||.-.-|
T Consensus 128 ~ka~~yP~qLSGGQqQRVAIARALaM---~P------~vmLF----------DEPTSAL--------------------- 167 (240)
T COG1126 128 DKADAYPAQLSGGQQQRVAIARALAM---DP------KVMLF----------DEPTSAL--------------------- 167 (240)
T ss_pred hhhhhCccccCcHHHHHHHHHHHHcC---CC------CEEee----------cCCcccC---------------------
Confidence 44455668999999999999999998 66 22222 4433333
Q ss_pred CCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecCh
Q psy834 607 NPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP 647 (926)
Q Consensus 607 ~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~ 647 (926)
|-- -|.-. -+.+.+++...-|=-+|||-=
T Consensus 168 ---DPE--lv~EV-------L~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 168 ---DPE--LVGEV-------LDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred ---CHH--HHHHH-------HHHHHHHHHcCCeEEEEechh
Confidence 111 23333 566788899999988889963
No 270
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.51 E-value=0.29 Score=56.66 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=52.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| +|..+ ||-.+-+ |.
T Consensus 140 ~~~~LSGGQrQRVaLArAL~~---~P------~LLLL----------DEPTsgL------------------------D~ 176 (549)
T PRK13545 140 PVKTYSSGMKSRLGFAISVHI---NP------DILVI----------DEALSVG------------------------DQ 176 (549)
T ss_pred CcccCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccC------------------------CH
Confidence 357899999999999999987 66 78888 7755444 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ ...|.++....-|=++|+|++-...+ +|+.+-+
T Consensus 177 ~--sr~~L-------lelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL 216 (549)
T PRK13545 177 T--FTKKC-------LDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWL 216 (549)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 3 33344 45677776555566667999766554 6776554
No 271
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=89.45 E-value=0.24 Score=54.19 Aligned_cols=70 Identities=16% Similarity=0.005 Sum_probs=50.6
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..++. +| +|..+ ||--+-+ |
T Consensus 397 ~~~~~LSgGq~qrv~la~al~~---~p------~lllL----------DEPt~gL------------------------D 433 (490)
T PRK10938 397 APFHSLSWGQQRLALIVRALVK---HP------TLLIL----------DEPLQGL------------------------D 433 (490)
T ss_pred CchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCccccC------------------------C
Confidence 4567999999999999998875 66 78888 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCc-eeEeecChhhHHh
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNT-RSRVQSSPTTRSR 652 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~t-r~~v~~~~~t~sr 652 (926)
.. +...+ .+.|.+++....+ =.+|+|+.-....
T Consensus 434 ~~--~~~~l-------~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 434 PL--NRQLV-------RRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HH--HHHHH-------HHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 44 55566 6778888765444 3445998766655
No 272
>PRK13409 putative ATPase RIL; Provisional
Probab=89.43 E-value=0.27 Score=56.31 Aligned_cols=74 Identities=15% Similarity=0.018 Sum_probs=53.9
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||+++|||..++. +| .|+.+ ||-.+=|
T Consensus 207 ~~~~~~LSgGe~qrv~ia~al~~---~p------~lllL----------DEPts~L------------------------ 243 (590)
T PRK13409 207 DRDISELSGGELQRVAIAAALLR---DA------DFYFF----------DEPTSYL------------------------ 243 (590)
T ss_pred cCChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------
Confidence 35677999999999999988874 56 79999 7766666
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhh
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSS 656 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~ 656 (926)
|.. +..++ .+.|.++.. ..|-.+|+|.......+ |+.
T Consensus 244 D~~--~~~~l-------~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v 281 (590)
T PRK13409 244 DIR--QRLNV-------ARLIRELAE-GKYVLVVEHDLAVLDYLADNV 281 (590)
T ss_pred CHH--HHHHH-------HHHHHHHHC-CCEEEEEeCCHHHHHHhCCEE
Confidence 444 45555 567788776 56666669998776654 554
No 273
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.20 E-value=0.32 Score=47.50 Aligned_cols=75 Identities=11% Similarity=0.014 Sum_probs=49.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| ++..+ ||-.+-+ |
T Consensus 114 ~~~~~LS~Ge~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D 150 (202)
T cd03233 114 EFVRGISGGERKRVSIAEALVS---RA------SVLCW----------DNSTRGL------------------------D 150 (202)
T ss_pred cchhhCCHHHHHHHHHHHHHhh---CC------CEEEE----------cCCCccC------------------------C
Confidence 4567899999999999999887 66 78888 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCce-eEeecChh-h-HHhhhhhc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTR-SRVQSSPT-T-RSRVQSSL 657 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr-~~v~~~~~-t-~sr~~~~~ 657 (926)
.. +...+ .+.|.++.....+- .+++||.. . ..-.|+.+
T Consensus 151 ~~--~~~~~-------~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 151 SS--TALEI-------LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred HH--HHHHH-------HHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 33 34444 66788887754444 44466642 3 33455443
No 274
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.19 E-value=0.37 Score=47.45 Aligned_cols=70 Identities=17% Similarity=0.046 Sum_probs=49.0
Q ss_pred CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834 536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN 615 (926)
Q Consensus 536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N 615 (926)
||||||.+++||..|+. +| ++..+ ||-.+-+ |.. +
T Consensus 72 LSgGq~qrv~laral~~---~p------~lllL----------DEPts~L------------------------D~~--~ 106 (177)
T cd03222 72 LSGGELQRVAIAAALLR---NA------TFYLF----------DEPSAYL------------------------DIE--Q 106 (177)
T ss_pred CCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC------------------------CHH--H
Confidence 99999999999999987 66 77777 7755555 444 4
Q ss_pred hhhhhhcccCCCCChhhhccCC-CceeEeecChhhHHh-hhhhc
Q psy834 616 LSRRAQANNSAQNPLPEVSSSP-NTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 616 ~~R~~~~~~~~~~~l~e~~~~~-~tr~~v~~~~~t~sr-~~~~~ 657 (926)
...+ .+.|.++.... -|-.+|+|+.....+ +|+.+
T Consensus 107 ~~~l-------~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 143 (177)
T cd03222 107 RLNA-------ARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143 (177)
T ss_pred HHHH-------HHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence 4445 45666665543 565666999876665 56554
No 275
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=89.12 E-value=0.24 Score=53.28 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=47.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||++||||--++. +| .|..+ ||--+-| |..
T Consensus 132 ~~~LSgGq~QRvalARAL~~---~P------~llLL----------DEP~s~L------------------------D~~ 168 (356)
T PRK11650 132 PRELSGGQRQRVAMGRAIVR---EP------AVFLF----------DEPLSNL------------------------DAK 168 (356)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 45999999999999999885 67 67777 6644444 322
Q ss_pred CCchhhhhhcccCCCCChhhhccCCC-ceeEeecChh-hHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPT-TRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~-t~sr~~~~~~v 659 (926)
+-..+ ...|.++....+ |=..|||+.. .+.-.|+.+-+
T Consensus 169 --~r~~l-------~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl 208 (356)
T PRK11650 169 --LRVQM-------RLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM 208 (356)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22333 445666666533 4444599986 45556765443
No 276
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.12 E-value=0.35 Score=49.77 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=51.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||..++||..++. +| +|..+ ||...-+ |.
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~---~p------~iLlL----------DEPt~gL------------------------D~ 176 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITV---NP------DILVI----------DEALSVG------------------------DQ 176 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCccccC------------------------CH
Confidence 456899999999999988775 55 88998 7755555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
. ....+ .+.|.++....-|=.+++|+...... .|+.+-
T Consensus 177 ~--~~~~l-------~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~ 215 (264)
T PRK13546 177 T--FAQKC-------LDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAW 215 (264)
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEE
Confidence 3 33344 55677776555565666998776554 566543
No 277
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=89.08 E-value=0.4 Score=48.90 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=52.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++. +| +|..+ ||--+-+ |.
T Consensus 164 ~~~~LSgGe~qrv~laraL~~---~p------~lllL----------DEPt~~L------------------------D~ 200 (271)
T PRK14238 164 NAYGLSGGQQQRLCIARCLAI---EP------DVILM----------DEPTSAL------------------------DP 200 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCcC------------------------CH
Confidence 456899999999999999876 66 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.+++. .-|=.+|+|++-...+ +|+.+-+
T Consensus 201 ~--~~~~l-------~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l 239 (271)
T PRK14238 201 I--STLKV-------EELVQELKK-DYSIIIVTHNMQQAARISDKTAFF 239 (271)
T ss_pred H--HHHHH-------HHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 4 45555 667777765 3454555998876544 5665443
No 278
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=89.01 E-value=0.32 Score=52.44 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=50.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||++||||--++. +| +|..+ ||--+-+ |..
T Consensus 134 ~~~LSgGq~QRVaLARaL~~---~P------~lLLL----------DEP~s~L------------------------D~~ 170 (351)
T PRK11432 134 VDQISGGQQQRVALARALIL---KP------KVLLF----------DEPLSNL------------------------DAN 170 (351)
T ss_pred hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence 46899999999999999887 77 67777 6644444 322
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.-..+ ...|.++... .-|=.+|||++....+ .|+..-+
T Consensus 171 --~r~~l-------~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm 210 (351)
T PRK11432 171 --LRRSM-------REKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVM 210 (351)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 22333 5566777654 3455666999987544 4665433
No 279
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.95 E-value=0.44 Score=48.22 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=52.0
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 160 ~~~~~LSgGq~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D 196 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAM---KP------AVLLL----------DEPASAL------------------------D 196 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhC---CC------CEEEE----------cCCCccc------------------------C
Confidence 3567999999999999999985 66 78888 7765555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v 659 (926)
.. ....+ .++|.++.. ..|=.+++|++-... -+|+.+-+
T Consensus 197 ~~--~~~~l-------~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 197 PI--SNAKI-------EELITELKE-EYSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred HH--HHHHH-------HHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEE
Confidence 33 34444 667777755 245445599987544 46766544
No 280
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=88.88 E-value=0.36 Score=51.14 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=51.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
...+||||||++++||.-++. +| .|..+ ||-..-| |.
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~---~P------~llil----------DEPts~L------------------------D~ 186 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIAC---RP------KLLIA----------DEPTTAL------------------------DV 186 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCCCC------------------------CH
Confidence 456999999999999999997 78 67777 7755555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHh-hhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr-~~~~~ 657 (926)
. +...+ -++|.++..... |=.+|||+.-...+ .|+.+
T Consensus 187 ~--~~~~i-------l~lL~~l~~~~g~til~iTHdl~~~~~~adri~ 225 (326)
T PRK11022 187 T--IQAQI-------IELLLELQQKENMALVLITHDLALVAEAAHKII 225 (326)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 3 33334 567888876433 44444999876655 56654
No 281
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.79 E-value=5.9 Score=47.01 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.6
Q ss_pred ccCchhHHHHHHHHHHHHHhcccc
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP 557 (926)
.-||-|||+-.|+++.+|=.+-.|
T Consensus 528 n~LSEGekt~iaf~yflakL~enp 551 (758)
T COG4694 528 NTLSEGEKTFIAFLYFLAKLKENP 551 (758)
T ss_pred ccccccchhHHHHHHHHHHHHhCc
Confidence 349999999999998888877777
No 282
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=9.3 Score=47.07 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=62.5
Q ss_pred EEEEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 520 NFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPN 599 (926)
Q Consensus 520 eISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~ 599 (926)
.|.|.-..+..+....||-|=|=..=|||-||+.+.--+-.- =||.+- ..-|+
T Consensus 886 ~I~V~~~~G~~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~-LP~i~D----------------------D~fVh---- 938 (984)
T COG4717 886 SIIVEHRAGGSKLAEELSQGTKEQLYLALRFALIHEVRTREP-LPFIAD----------------------DIFVH---- 938 (984)
T ss_pred eeEEEecccccccHHHHhhhHHHHHHHHHHHHHHhhhccCCC-CCeeec----------------------cchhc----
Confidence 466666666677888999999999999999999876530000 122221 00111
Q ss_pred CCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceee
Q psy834 600 SRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQS 661 (926)
Q Consensus 600 ~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~ 661 (926)
-|+. -..|. |++|.+|+. ++-=+-+|||+-|..++-++=+|+.
T Consensus 939 ---------FD~~--R~~r~-------~e~l~dls~-~~QviYFTCHe~~~d~~~s~~vI~l 981 (984)
T COG4717 939 ---------FDDE--RAKRM-------LELLADLSE-GNQVIYFTCHEHTCDAFPSSEVITL 981 (984)
T ss_pred ---------cCHH--HHHHH-------HHHHHHhcc-CCeEEEEEechhhhcccccccceee
Confidence 1333 33455 999999998 5555555999999877666666653
No 283
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=88.78 E-value=0.33 Score=52.27 Aligned_cols=76 Identities=14% Similarity=0.050 Sum_probs=51.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||++||||-.++. +| ++..+ ||--.-| |.
T Consensus 133 ~~~~LSgGq~QRvalArAL~~---~P------~llLL----------DEP~s~L------------------------D~ 169 (353)
T PRK10851 133 YPAQLSGGQKQRVALARALAV---EP------QILLL----------DEPFGAL------------------------DA 169 (353)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 346999999999999998876 66 67777 6644444 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCC-CceeEeecChhh-HHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSP-NTRSRVQSSPTT-RSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~-~tr~~v~~~~~t-~sr~~~~~~v 659 (926)
. +-..+ .+.|.++.... -|=.+|||++.- +.-.|+.+-+
T Consensus 170 ~--~r~~l-------~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl 210 (353)
T PRK10851 170 Q--VRKEL-------RRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM 210 (353)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 33344 56777887763 455666999976 4446665443
No 284
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.75 E-value=0.45 Score=47.90 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=52.2
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||..|+. +| +|..+ ||..+-+ |-
T Consensus 147 ~~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~ 183 (259)
T PRK14260 147 SALGLSGGQQQRLCIARALAI---KP------KVLLM----------DEPCSAL------------------------DP 183 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CH
Confidence 456899999999999999874 66 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... -|=.+|+|++-.... +|+.+-+
T Consensus 184 ~--~~~~l-------~~~l~~~~~~-~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 184 I--ATMKV-------EELIHSLRSE-LTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred H--HHHHH-------HHHHHHHhcC-CEEEEEeCCHHHHHHhcCeEEEE
Confidence 4 44455 5667777653 455556999877655 4664433
No 285
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=88.72 E-value=0.4 Score=48.82 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=52.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.++|||..|+. +| ++..+ ||-.+-+ |.
T Consensus 165 ~~~~LS~Gq~qrv~laral~~---~p------~lllL----------DEPt~gL------------------------D~ 201 (272)
T PRK14236 165 NAFGLSGGQQQRLVIARAIAI---EP------EVLLL----------DEPTSAL------------------------DP 201 (272)
T ss_pred CcccCCHHHHHHHHHHHHHHC---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999998875 56 78888 6655544 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.+++. ..|-++++|++-...+ .|+.+-+
T Consensus 202 ~--~~~~l-------~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 202 I--STLKI-------EELITELKS-KYTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred H--HHHHH-------HHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence 3 44445 566777765 3566666999876544 6766554
No 286
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=88.69 E-value=0.33 Score=55.49 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=54.9
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||++|+||..|+. +| .|..+ ||--+-| |
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~---~P------~lLll----------DEPt~~L------------------------D 200 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSC---RP------AVLIA----------DEPTTAL------------------------D 200 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCCCcc------------------------C
Confidence 4567999999999999999985 88 68888 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ -++|.++... .-|=.+|+|..-...+ +|+.+-+
T Consensus 201 ~~--~~~~l-------~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 201 VT--IQAQI-------LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred HH--HHHHH-------HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 44 44444 5678888765 4454555999766555 5776544
No 287
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=88.57 E-value=0.33 Score=52.89 Aligned_cols=75 Identities=16% Similarity=0.053 Sum_probs=48.6
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||++||||-.++. +| ++..+ ||-.+-+ |..
T Consensus 142 p~~LSgGq~QRVaLARaL~~---~P------~llLL----------DEP~s~L------------------------D~~ 178 (375)
T PRK09452 142 PHQLSGGQQQRVAIARAVVN---KP------KVLLL----------DESLSAL------------------------DYK 178 (375)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCcC------------------------CHH
Confidence 36899999999999999887 67 67777 5543333 222
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~~v 659 (926)
.-..+ ...|.++... .-|=..|||++.- ++-.|+.+-+
T Consensus 179 --~r~~l-------~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl 218 (375)
T PRK09452 179 --LRKQM-------QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVM 218 (375)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22233 5566666664 3344555999885 5556665433
No 288
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=88.52 E-value=0.37 Score=60.62 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=54.9
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||=-|.- +| ||..+ ||--+-| |..
T Consensus 1357 ~~LSGGQkQRIaIARALlr---~p------~ILLL----------DEaTSaL------------------------D~~- 1392 (1466)
T PTZ00265 1357 KSLSGGQKQRIAIARALLR---EP------KILLL----------DEATSSL------------------------DSN- 1392 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccc------------------------CHH-
Confidence 5799999999999864433 56 89999 8877777 433
Q ss_pred CchhhhhhcccCCCCChhhhc-cCCCceeEeecChhhHHhhhhhccee
Q psy834 614 PNLSRRAQANNSAQNPLPEVS-SSPNTRSRVQSSPTTRSRVQSSLTIQ 660 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~-~~~~tr~~v~~~~~t~sr~~~~~~v~ 660 (926)
+-... +.-|.++. ....|-.+|+|..-|+.++|+.+-+.
T Consensus 1393 -sE~~I-------~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~ 1432 (1466)
T PTZ00265 1393 -SEKLI-------EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432 (1466)
T ss_pred -HHHHH-------HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEe
Confidence 22223 33455654 24578888899999999999998764
No 289
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.46 E-value=0.37 Score=48.14 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=51.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||..++. +| +|..+ ||..+-+ |.
T Consensus 146 ~~~~LS~G~~qrv~laral~~---~p------~lllL----------DEP~~gL------------------------D~ 182 (253)
T PRK14261 146 SALSLSGGQQQRLCIARTLAV---NP------EVILM----------DEPCSAL------------------------DP 182 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456899999999999998887 66 78888 7766655 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v 659 (926)
. +...+ ...|.++... .|=.+++|++-.- .-+|+.+-+
T Consensus 183 ~--~~~~l-------~~~l~~~~~~-~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 183 I--ATAKI-------EDLIEDLKKE-YTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred H--HHHHH-------HHHHHHHhhC-ceEEEEEcCHHHHHhhCCEEEEE
Confidence 4 44555 4567777653 3434448987654 346766544
No 290
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=88.43 E-value=0.43 Score=47.10 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=50.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..|+. +| ++..+ ||-.+-+ |.
T Consensus 140 ~~~~LS~Ge~qrv~laral~~---~p------~~lll----------DEPt~~L------------------------D~ 176 (242)
T TIGR03411 140 LAGLLSHGQKQWLEIGMLLMQ---DP------KLLLL----------DEPVAGM------------------------TD 176 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCccCC------------------------CH
Confidence 446899999999999998876 55 78888 7766666 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.. ..|=.+++|+.-.... +|+.+-+
T Consensus 177 ~--~~~~l-------~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l 215 (242)
T TIGR03411 177 E--ETEKT-------AELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVL 215 (242)
T ss_pred H--HHHHH-------HHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 4 44444 566777765 2344444888876654 5655433
No 291
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.32 E-value=0.39 Score=48.46 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=51.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| +|..+ ||-.+-+ |..
T Consensus 159 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~gL------------------------D~~ 195 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALAT---DP------EILLF----------DEPTSAL------------------------DPI 195 (265)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence 56899999999999998887 66 78888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ +..|.+++.. .|=.+|+|+.-.... .|+.+-
T Consensus 196 --~~~~l-------~~~l~~l~~~-~tiiivth~~~~~~~~~d~i~~ 232 (265)
T PRK14252 196 --ATASI-------EELISDLKNK-VTILIVTHNMQQAARVSDYTAY 232 (265)
T ss_pred --HHHHH-------HHHHHHHHhC-CEEEEEecCHHHHHHhCCEEEE
Confidence 55556 6677777652 455666998866543 565543
No 292
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=88.29 E-value=0.36 Score=55.17 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=52.2
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||++++||..++. +| +|..+ ||--.-| |
T Consensus 459 ~~~~~LSgGqrQRv~iAraL~~---~p------~llll----------DEPts~L------------------------D 495 (623)
T PRK10261 459 RYPHEFSGGQRQRICIARALAL---NP------KVIIA----------DEAVSAL------------------------D 495 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------C
Confidence 3456899999999999999985 67 78888 7755545 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
.. +...+ .++|.++... ..|=.+|+|+.-...+ .|+.+
T Consensus 496 ~~--~~~~i-------~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~ 535 (623)
T PRK10261 496 VS--IRGQI-------INLLLDLQRDFGIAYLFISHDMAVVERISHRVA 535 (623)
T ss_pred HH--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 44 44444 6778888765 3454445999776554 56544
No 293
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=88.27 E-value=0.38 Score=52.16 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=23.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
.+.+||||||++||||-.++. +| +|..+
T Consensus 134 ~~~~LSgGq~QRvaLARAL~~---~P------~llLL 161 (362)
T TIGR03258 134 LPAQLSGGMQQRIAIARAIAI---EP------DVLLL 161 (362)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 345999999999999999987 67 67777
No 294
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.25 E-value=0.47 Score=48.57 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=52.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||..++||..|+. +| ++..+ ||..+-+ |-.
T Consensus 135 ~~~LS~Gq~qrl~laraL~~---~p------~llil----------DEPt~gL------------------------D~~ 171 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAM---EP------QVLVL----------DEPTAGL------------------------DPQ 171 (277)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 35899999999999999887 66 67888 7766665 433
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .++|.++... .-|=.+++|++-.... .|+.+-+
T Consensus 172 --~~~~l-------~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l 211 (277)
T PRK13652 172 --GVKEL-------IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM 211 (277)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 44445 5667777764 4455555999876644 5665443
No 295
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.24 E-value=0.43 Score=45.23 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=47.2
Q ss_pred CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834 536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN 615 (926)
Q Consensus 536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N 615 (926)
||||||.+++||..++. +| .+..+ ||-.+-+ |.+ +
T Consensus 97 LS~G~~~rl~la~al~~---~p------~llll----------DEP~~gL------------------------D~~--~ 131 (171)
T cd03228 97 LSGGQRQRIAIARALLR---DP------PILIL----------DEATSAL------------------------DPE--T 131 (171)
T ss_pred hCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCcCC------------------------CHH--H
Confidence 99999999999998876 66 67788 7755555 444 4
Q ss_pred hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
...+ -+.|.++.. .-|=.+++|.+-.+...|+.+-+
T Consensus 132 ~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~l 167 (171)
T cd03228 132 EALI-------LEALRALAK-GKTVIVIAHRLSTIRDADRIIVL 167 (171)
T ss_pred HHHH-------HHHHHHhcC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 4444 445666643 23434448988777666665443
No 296
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=88.17 E-value=0.53 Score=45.48 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=24.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
....||||||.+++||..++. +| +|..+
T Consensus 124 ~~~~lS~G~~qrv~laral~~---~p------~llll 151 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYS---DA------DIYLL 151 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 356899999999999999887 66 78888
No 297
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=87.98 E-value=0.39 Score=51.74 Aligned_cols=74 Identities=16% Similarity=0.067 Sum_probs=48.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
...+||||||++||||--++. +| ++..+ ||--+-+ |.
T Consensus 131 ~~~~LSgGq~QRvaLARaL~~---~P------~llLL----------DEP~s~L------------------------D~ 167 (353)
T TIGR03265 131 YPGQLSGGQQQRVALARALAT---SP------GLLLL----------DEPLSAL------------------------DA 167 (353)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 446899999999999999987 67 66777 5544444 22
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhh-HHhhhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTT-RSRVQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t-~sr~~~~~ 657 (926)
. .-..+ ...|.++....+ |=..|||++-. +.-.|+.+
T Consensus 168 ~--~r~~l-------~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~ 206 (353)
T TIGR03265 168 R--VREHL-------RTEIRQLQRRLGVTTIMVTHDQEEALSMADRIV 206 (353)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE
Confidence 2 22233 556667666533 44555999985 45567654
No 298
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=87.98 E-value=0.43 Score=58.03 Aligned_cols=78 Identities=22% Similarity=0.094 Sum_probs=59.2
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
+.+..||||||++++||-.++. +| . .++++ ||-.+=|
T Consensus 485 r~~~~LSgGE~QRv~LA~aL~~---~~-----~~~llIL----------DEPtagL------------------------ 522 (943)
T PRK00349 485 RSAGTLSGGEAQRIRLATQIGS---GL-----TGVLYVL----------DEPSIGL------------------------ 522 (943)
T ss_pred CchhhCCHHHHHHHHHHHHHhh---CC-----CCcEEEe----------cCCccCC------------------------
Confidence 5778999999999999999986 33 2 37888 6644444
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.. ...++ -..|.++....+|-.+|+|.+-.+...|+.+-+
T Consensus 523 d~~--~~~~L-------~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 523 HQR--DNDRL-------IETLKHLRDLGNTLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 334 55666 667888877788988889999988878886654
No 299
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.83 E-value=0.5 Score=49.34 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=50.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||.+++||..++. +| +|..+ ||-.+-| |..
T Consensus 198 ~~~LSgGq~qrv~LAraL~~---~p------~lLLL----------DEPtsgL------------------------D~~ 234 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAV---DP------EVILM----------DEPASAL------------------------DPI 234 (305)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence 45899999999999999986 66 78888 7766666 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhh
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSS 656 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~ 656 (926)
+...+ .+.|.++... -|=.+|+|++-.... +|+.
T Consensus 235 --~~~~l-------~~~L~~~~~~-~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 235 --ATSKI-------EDLIEELAEE-YTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred --HHHHH-------HHHHHHHhcC-CEEEEEEcCHHHHHHhcCEE
Confidence 44455 5667777664 454555999877544 5653
No 300
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=87.67 E-value=0.43 Score=53.45 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=52.2
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||.+++||..++. +| +|..+ ||-.+-+
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------ 474 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKS---GG------NVLLL----------DEPTNDL------------------------ 474 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCCCCC------------------------
Confidence 45678999999999999998875 66 89999 8755555
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
|.. +...+ .+.|.++. .|=.+|+|++-...+ +|+.+-
T Consensus 475 D~~--~~~~l-------~~~l~~~~---~~viivsHd~~~~~~~~d~i~~ 512 (552)
T TIGR03719 475 DVE--TLRAL-------EEALLEFA---GCAVVISHDRWFLDRIATHILA 512 (552)
T ss_pred CHH--HHHHH-------HHHHHHCC---CeEEEEeCCHHHHHHhCCEEEE
Confidence 544 55555 45565553 364455999887776 466543
No 301
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=87.60 E-value=0.41 Score=52.10 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=50.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
...+||||||++++||..+|. +| +|..+ ||--+-+ |-
T Consensus 126 ~p~~LSGGq~QRV~lARAL~~---~p------~iLLl----------DEP~saL------------------------D~ 162 (363)
T TIGR01186 126 YPDELSGGMQQRVGLARALAA---EP------DILLM----------DEAFSAL------------------------DP 162 (363)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 344899999999999999885 66 78888 6654444 22
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
. .-..+ ++.|.++... .-|-++|||..-...+ .|+.+
T Consensus 163 ~--~r~~l-------~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 163 L--IRDSM-------QDELKKLQATLQKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 2 22333 5566666543 5677778999876555 56654
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=87.60 E-value=0.52 Score=52.79 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=50.3
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| +|..+ ||-.+-+ |
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~---~p------~lLLL----------DEPt~~L------------------------D 193 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLS---KP------DMLLL----------DEPTNHL------------------------D 193 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------C
Confidence 3567999999999999999985 66 78888 7765555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhccee
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSLTIQ 660 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~~v~ 660 (926)
.. +...+ .+.|.+.. .|=.+|+|+.--...+ |+.+-+.
T Consensus 194 ~~--~~~~l-------~~~L~~~~---~tvIiisHd~~~~~~~~d~v~~l~ 232 (552)
T TIGR03719 194 AE--SVAWL-------EQHLQEYP---GTVVAVTHDRYFLDNVAGWILELD 232 (552)
T ss_pred hH--HHHHH-------HHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEE
Confidence 44 44444 33444442 3545559988766554 6665543
No 303
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=87.45 E-value=0.51 Score=54.27 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=51.3
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||++++||.+|+. +| +|..+ ||-..-|
T Consensus 425 ~~~~~~LSgGekqRl~La~~l~~---~p------~lLlL----------DEPt~~L------------------------ 461 (638)
T PRK10636 425 TEETRRFSGGEKARLVLALIVWQ---RP------NLLLL----------DEPTNHL------------------------ 461 (638)
T ss_pred cCchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------
Confidence 45788999999999999999885 55 88898 7733333
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
|-. ....+ .+.|.++ ..|=.+|+|..-...+ +|+.+-+
T Consensus 462 D~~--~~~~l-------~~~L~~~---~gtvi~vSHd~~~~~~~~d~i~~l 500 (638)
T PRK10636 462 DLD--MRQAL-------TEALIDF---EGALVVVSHDRHLLRSTTDDLYLV 500 (638)
T ss_pred CHH--HHHHH-------HHHHHHc---CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 333 44445 4455555 2476667999887766 4555433
No 304
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=87.43 E-value=0.52 Score=53.96 Aligned_cols=73 Identities=21% Similarity=0.130 Sum_probs=50.3
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||.+++||..|+. +| +|..+ ||-..-+
T Consensus 435 ~~~~~~LSgGekqRl~la~al~~---~p------~lLlL----------DEPt~~L------------------------ 471 (635)
T PRK11147 435 MTPVKALSGGERNRLLLARLFLK---PS------NLLIL----------DEPTNDL------------------------ 471 (635)
T ss_pred hChhhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------
Confidence 45678999999999999998876 55 78888 7655444
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhc
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSL 657 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~ 657 (926)
|-. +...+ ++.|.++ ..|=.+|+|+.-.+.++ |+.+
T Consensus 472 D~~--~~~~l-------~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~ 508 (635)
T PRK11147 472 DVE--TLELL-------EELLDSY---QGTVLLVSHDRQFVDNTVTECW 508 (635)
T ss_pred CHH--HHHHH-------HHHHHhC---CCeEEEEECCHHHHHHhcCEEE
Confidence 444 45555 5556555 24656669998776653 4443
No 305
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=87.42 E-value=0.43 Score=52.64 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=51.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||++++||..|+. +| +|..+ ||--+-+ |..
T Consensus 162 ~~~LSgGq~QRv~LArAL~~---~P------~iLLL----------DEPts~L------------------------D~~ 198 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAI---NP------DILLM----------DEAFSAL------------------------DPL 198 (400)
T ss_pred cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCccC------------------------CHH
Confidence 35899999999999999887 67 78888 7755555 333
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
+...+ .+.|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus 199 --~r~~l-------~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL 238 (400)
T PRK10070 199 --IRTEM-------QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM 238 (400)
T ss_pred --HHHHH-------HHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence 44445 6677777653 3455666999876544 5665543
No 306
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=87.38 E-value=0.55 Score=47.36 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=51.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
...||||||..++||..|+- +| ++..+ ||-.+-+ |..
T Consensus 154 ~~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~gL------------------------D~~ 190 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVR---KS------SILIM----------DEATASI------------------------DMA 190 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH
Confidence 45899999999999998875 56 77888 6655444 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ ...|.++.. .-|=.+++|++-....+|+.+-+
T Consensus 191 --~~~~l-------~~~l~~~~~-~~tiii~sh~~~~~~~~dri~~l 227 (257)
T cd03288 191 --TENIL-------QKVVMTAFA-DRTVVTIAHRVSTILDADLVLVL 227 (257)
T ss_pred --HHHHH-------HHHHHHhcC-CCEEEEEecChHHHHhCCEEEEE
Confidence 34445 455666543 34555569999988878877554
No 307
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=87.28 E-value=0.49 Score=59.59 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=59.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||+++|||--|.- +| +|..+ ||--+-+ |..
T Consensus 577 g~~LSGGQkQRiaIARAll~---~P------~ILlL----------DEpTSaL------------------------D~~ 613 (1466)
T PTZ00265 577 ASKLSGGQKQRISIARAIIR---NP------KILIL----------DEATSSL------------------------DNK 613 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccc------------------------CHH
Confidence 34799999999999987764 66 89999 8866666 444
Q ss_pred CCchhhhhhcccCCCCChhhhcc-CCCceeEeecChhhHHhhhhhcceeeecCC
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSS-SPNTRSRVQSSPTTRSRVQSSLTIQSAEQG 665 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~-~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G 665 (926)
+-..+ +..|.++.. ...|-.+|+|..-+....|+.+-+.-.+.|
T Consensus 614 --se~~i-------~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g 658 (1466)
T PTZ00265 614 --SEYLV-------QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERG 658 (1466)
T ss_pred --HHHHH-------HHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccc
Confidence 44445 666777764 356777779999998888887766543333
No 308
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=87.24 E-value=0.49 Score=50.36 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=50.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+|||||++.++||..++. +| .|..+ ||--.-| |-.
T Consensus 159 p~~LSgG~~QRv~IArAL~~---~P------~llil----------DEPts~L------------------------D~~ 195 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLC---RP------KLLIA----------DEPTTAL------------------------DVT 195 (330)
T ss_pred cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence 45899999999999999987 77 77788 7754444 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHh-hhhhcc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr-~~~~~~ 658 (926)
+...+ -++|.++....+ |=.+|+|..-...+ .|+.+-
T Consensus 196 --~~~~i-------~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~v 234 (330)
T PRK09473 196 --VQAQI-------MTLLNELKREFNTAIIMITHDLGVVAGICDKVLV 234 (330)
T ss_pred --HHHHH-------HHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 33333 556777776533 44444999877665 466543
No 309
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=87.17 E-value=0.57 Score=52.03 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=52.6
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||.+++||..|+. +| +|..+ ||-.+-+
T Consensus 433 ~~~~~~LSgGq~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------ 469 (530)
T PRK15064 433 KKSVKVLSGGEKGRMLFGKLMMQ---KP------NVLVM----------DEPTNHM------------------------ 469 (530)
T ss_pred cCcccccCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------
Confidence 45689999999999999999885 55 89999 7755555
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
|-. +...+ .+.|.++ ..|=.+|+|++-.... +|+.+-+
T Consensus 470 D~~--~~~~l-------~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l 508 (530)
T PRK15064 470 DME--SIESL-------NMALEKY---EGTLIFVSHDREFVSSLATRIIEI 508 (530)
T ss_pred CHH--HHHHH-------HHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 444 45555 3445555 2365666999887665 4665543
No 310
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.03 E-value=0.76 Score=43.01 Aligned_cols=68 Identities=22% Similarity=0.162 Sum_probs=45.7
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
+|||||+.+++||..|+. +| ++..+ ||-.+-+ |..
T Consensus 70 ~lS~G~~~rv~laral~~---~p------~illl----------DEP~~~L------------------------D~~-- 104 (144)
T cd03221 70 QLSGGEKMRLALAKLLLE---NP------NLLLL----------DEPTNHL------------------------DLE-- 104 (144)
T ss_pred cCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH--
Confidence 499999999999888866 66 78888 7766666 444
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhc
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSL 657 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~ 657 (926)
+...+ .+.|.++. .|=++++|.+-..... |+.+
T Consensus 105 ~~~~l-------~~~l~~~~---~til~~th~~~~~~~~~d~v~ 138 (144)
T cd03221 105 SIEAL-------EEALKEYP---GTVILVSHDRYFLDQVATKII 138 (144)
T ss_pred HHHHH-------HHHHHHcC---CEEEEEECCHHHHHHhCCEEE
Confidence 44555 34455542 3545558887766553 6554
No 311
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=86.95 E-value=0.5 Score=50.98 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=50.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
...+||||||++|+||--||. +| ++..+ ||-.+-+ |-
T Consensus 137 ~~~~LSgGqkQRV~IARAL~~---~P------~iLLl----------DEPts~L------------------------D~ 173 (343)
T TIGR02314 137 YPSNLSGGQKQRVAIARALAS---NP------KVLLC----------DEATSAL------------------------DP 173 (343)
T ss_pred ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCcccC------------------------CH
Confidence 346999999999999999996 67 67777 6644444 32
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
. +...+ .++|.++... .-|=.+|||..-...+ +|+.+-
T Consensus 174 ~--t~~~i-------~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~v 213 (343)
T TIGR02314 174 A--TTQSI-------LELLKEINRRLGLTILLITHEMDVVKRICDCVAV 213 (343)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 2 33333 5677888765 3455555998766555 576543
No 312
>PLN03130 ABC transporter C family member; Provisional
Probab=86.87 E-value=0.64 Score=59.14 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=50.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
-..||||||+++|||= |+++ + ++|+.+ ||.-+-+ | +
T Consensus 738 G~~LSGGQKQRIaLAR--Aly~-~------~~IlLL----------DEptSAL------------------------D-~ 773 (1622)
T PLN03130 738 GVNISGGQKQRVSMAR--AVYS-N------SDVYIF----------DDPLSAL------------------------D-A 773 (1622)
T ss_pred CCCCCHHHHHHHHHHH--HHhC-C------CCEEEE----------CCCcccc------------------------C-H
Confidence 3479999999999985 3332 3 489999 7766666 3 2
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
.+++..- .+.+..+. ...|+-+|||+.-+...+|+.+-+
T Consensus 774 --~~~~~I~-----~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L 812 (1622)
T PLN03130 774 --HVGRQVF-----DKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILV 812 (1622)
T ss_pred --HHHHHHH-----HHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEE
Confidence 3444210 12222222 357999999999999999998765
No 313
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=86.35 E-value=0.75 Score=46.79 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=53.3
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+....||||||..++||-.|+. +| ++..+ ||..+-+ |
T Consensus 159 ~~~~~LS~G~~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D 195 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAV---KP------DILLM----------DEPASAL------------------------D 195 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------C
Confidence 3456899999999999988876 66 78888 7766666 5
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v 659 (926)
.. +...+ ...|.++.. ..|=.+|+|++-.. .=+|+.+-+
T Consensus 196 ~~--~~~~l-------~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 196 PI--STMQL-------EETMFELKK-NYTIIIVTHNMQQAARASDYTAFF 235 (267)
T ss_pred HH--HHHHH-------HHHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEE
Confidence 44 56666 667777754 34445559998654 446776554
No 314
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=86.23 E-value=0.56 Score=57.12 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=57.9
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||..++. +| .=.+|+.+ ||-..-| |
T Consensus 826 ~~~~tLSgGEkQRl~LAraL~~---~p---~~~~llIL----------DEPtsGL------------------------D 865 (943)
T PRK00349 826 QPATTLSGGEAQRVKLAKELSK---RS---TGKTLYIL----------DEPTTGL------------------------H 865 (943)
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC---CCCeEEEE----------ECCCCCC------------------------C
Confidence 5678999999999999999874 33 00268998 7766555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
.. +...+ .+.|.++....+|=++|+|++-.+...|..+-+
T Consensus 866 ~~--~~~~L-------~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~L 905 (943)
T PRK00349 866 FE--DIRKL-------LEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDL 905 (943)
T ss_pred HH--HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence 44 55666 566777776677877779999888777765433
No 315
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=85.77 E-value=0.6 Score=49.57 Aligned_cols=78 Identities=21% Similarity=0.121 Sum_probs=55.4
Q ss_pred cccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 529 SYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNP 608 (926)
Q Consensus 529 r~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~ 608 (926)
.-+.|..|||||+++|-||--||- +| -|.++ || |+-|-
T Consensus 133 ~~r~i~~LSGGQ~QRV~lARAL~~---~p------~lllL----------DE---P~~gv-------------------- 170 (254)
T COG1121 133 RDRQIGELSGGQKQRVLLARALAQ---NP------DLLLL----------DE---PFTGV-------------------- 170 (254)
T ss_pred hCCcccccCcHHHHHHHHHHHhcc---CC------CEEEe----------cC---CcccC--------------------
Confidence 346799999999999999998875 66 67787 55 55322
Q ss_pred CCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834 609 NSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 609 ~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
|-+ +...+ -++|.++....-|=..|+|..-.... .|+.+-
T Consensus 171 -D~~--~~~~i-------~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~ 211 (254)
T COG1121 171 -DVA--GQKEI-------YDLLKELRQEGKTVLMVTHDLGLVMAYFDRVIC 211 (254)
T ss_pred -CHH--HHHHH-------HHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEE
Confidence 333 44555 78899999986666666888755443 666543
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=85.48 E-value=0.76 Score=51.66 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=48.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||..|+. +| ++..+ ||-.+=| |
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~---~p------~vlLL----------DEPt~~L------------------------D 195 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLE---KP------DMLLL----------DEPTNHL------------------------D 195 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhC---CC------CEEEE----------cCCCCcC------------------------C
Confidence 4567899999999999999985 66 78888 7744444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.+.. .|=.+|+|+.-.... .|+.+-+
T Consensus 196 ~~--~~~~l-------~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 196 AE--SVAWL-------EQFLHDYP---GTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred hH--HHHHH-------HHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEE
Confidence 33 34444 34455543 354555999876665 4555444
No 317
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.30 E-value=0.92 Score=46.20 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=51.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..|||||+.+++||..|+. +| ++..+ ||-.+-+ |-
T Consensus 146 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPtsgL------------------------D~ 182 (261)
T PRK14263 146 SGLSLSGGQQQRLCIARAIAT---EP------EVLLL----------DEPCSAL------------------------DP 182 (261)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 456899999999999988874 66 78888 7765555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .++|.++.. .-|=++++|++-.... +|+.+-+
T Consensus 183 ~--~~~~l-------~~~l~~~~~-~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 183 I--ATRRV-------EELMVELKK-DYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 3 45555 667777754 3454555999876544 5665433
No 318
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=85.30 E-value=0.69 Score=48.98 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=49.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||+.++||..++. +| .|..+ ||--.-| |-.
T Consensus 156 p~~LSgG~~QRv~iArAL~~---~P------~llil----------DEPts~L------------------------D~~ 192 (330)
T PRK15093 156 PYELTEGECQKVMIAIALAN---QP------RLLIA----------DEPTNAM------------------------EPT 192 (330)
T ss_pred chhCCHHHHHHHHHHHHHHC---CC------CEEEE----------eCCCCcC------------------------CHH
Confidence 46999999999999999987 77 77888 7755555 322
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
+-..+ .++|.++... .-|=.+|+|+.-...+ .|+.+
T Consensus 193 --~~~~i-------~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~ 230 (330)
T PRK15093 193 --TQAQI-------FRLLTRLNQNNNTTILLISHDLQMLSQWADKIN 230 (330)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 22223 5678887764 3454555998765544 55543
No 319
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=85.24 E-value=0.86 Score=57.50 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=56.5
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||++.|||=.+. +. ++|..+ ||-.+-+ |..
T Consensus 1420 ~~LSgGQrQrl~LARALL----r~-----~~ILiL----------DEaTSal------------------------D~~- 1455 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLARALL----RK-----TKILVL----------DEATAAV------------------------DLE- 1455 (1522)
T ss_pred CcCCHHHHHHHHHHHHHH----cC-----CCEEEE----------ECCcccC------------------------CHH-
Confidence 579999999999998554 33 589999 7766555 333
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCCC
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSPN 668 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~~ 668 (926)
+-... +..|.+... ..|-..|+|..-|....|+.+-+ ..+|.|.|.
T Consensus 1456 -Te~~I-------q~~l~~~~~-~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1456 -TDNLI-------QSTIRTQFE-DCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred -HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 21222 444554432 36888889999999999998866 345666553
No 320
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=84.92 E-value=0.71 Score=49.55 Aligned_cols=77 Identities=14% Similarity=0.010 Sum_probs=52.8
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..|+. +| ++..+ ||-.+-| |
T Consensus 168 ~~~~~LS~G~kqrv~lA~aL~~---~P------~lLiL----------DEPt~gL------------------------D 204 (340)
T PRK13536 168 ARVSDLSGGMKRRLTLARALIN---DP------QLLIL----------DEPTTGL------------------------D 204 (340)
T ss_pred CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------C
Confidence 3456899999999999999887 77 77888 6644444 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ .+.|.++.....|=++++|+.--..+ +|+.+-+
T Consensus 205 ~~--~r~~l-------~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il 245 (340)
T PRK13536 205 PH--ARHLI-------WERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 245 (340)
T ss_pred HH--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 23 34445 66788887655565566888776655 5665544
No 321
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=84.89 E-value=0.78 Score=40.94 Aligned_cols=28 Identities=32% Similarity=0.227 Sum_probs=22.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
.+..||||||.+++||..|+- +| +|..+
T Consensus 105 ~~~~LS~Ge~~rl~la~al~~---~~------~llll 132 (137)
T PF00005_consen 105 RASSLSGGEKQRLALARALLK---NP------KLLLL 132 (137)
T ss_dssp CGGGSCHHHHHHHHHHHHHHT---TS------SEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHc---CC------CEEEE
Confidence 338999999999999998763 44 77777
No 322
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=84.72 E-value=0.66 Score=45.42 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=48.0
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..++. +| ++..+ ||-.+-+ |-.
T Consensus 140 ~~lS~G~~qrv~laral~~---~p------~illl----------DEP~~~L------------------------D~~- 175 (220)
T TIGR02982 140 HNLSGGQKQRVAIARALVH---RP------KLVLA----------DEPTAAL------------------------DSK- 175 (220)
T ss_pred hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCcC------------------------CHH-
Confidence 4799999999999998877 66 77777 6654444 333
Q ss_pred CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~ 657 (926)
....+ .+.|.++..+ .-|=.+|+|..-.+.-.|+.+
T Consensus 176 -~~~~l-------~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~ 212 (220)
T TIGR02982 176 -SGRDV-------VELMQKLAREQGCTILIVTHDNRILDVADRIV 212 (220)
T ss_pred -HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEE
Confidence 22333 4567777653 455566699987665555543
No 323
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=84.65 E-value=0.77 Score=48.19 Aligned_cols=76 Identities=14% Similarity=0.009 Sum_probs=50.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||..++||..|+. +| .+..+ ||-.+-+ |-
T Consensus 135 ~~~~LS~G~~qrl~la~aL~~---~P------~lllL----------DEPt~gL------------------------D~ 171 (306)
T PRK13537 135 KVGELSGGMKRRLTLARALVN---DP------DVLVL----------DEPTTGL------------------------DP 171 (306)
T ss_pred chhhCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCCcCC------------------------CH
Confidence 446899999999999998876 77 67777 5533333 22
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=++++|..--..+ +|+.+=+
T Consensus 172 ~--~~~~l-------~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 172 Q--ARHLM-------WERLRSLLARGKTILLTTHFMEEAERLCDRLCVI 211 (306)
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 2 33444 66788887654555555888876666 5665433
No 324
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=84.65 E-value=0.7 Score=58.24 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=49.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||+++|||=.+.- + ++|+.+ ||.-+-+ |.
T Consensus 757 ~g~~LSGGQkqRiaLARAl~~---~------~~illL----------DEp~saL------------------------D~ 793 (1522)
T TIGR00957 757 KGVNLSGGQKQRVSLARAVYS---N------ADIYLF----------DDPLSAV------------------------DA 793 (1522)
T ss_pred CCCCCCHHHHHHHHHHHHHhc---C------CCEEEE----------cCCcccc------------------------CH
Confidence 356899999999999976553 3 489999 7766666 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +.+....+ |.-+..+. ...|..+|||++-....+|+.+-+
T Consensus 794 ~---~~~~i~~~---l~~~~~~~-~~~tvIlvTH~~~~l~~~D~ii~l 834 (1522)
T TIGR00957 794 H---VGKHIFEH---VIGPEGVL-KNKTRILVTHGISYLPQVDVIIVM 834 (1522)
T ss_pred H---HHHHHHHH---Hhhhhhhh-cCCEEEEEeCChhhhhhCCEEEEe
Confidence 2 32221100 10001111 236888999999999999987655
No 325
>PF13175 AAA_15: AAA ATPase domain
Probab=84.52 E-value=5.8 Score=41.20 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=51.4
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPN 605 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~ 605 (926)
++...++.++|.|++.++.|+|+|++....-.-.... -|... ||-.+=|
T Consensus 333 ~~~~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illi----------dEPE~~L-------------------- 382 (415)
T PF13175_consen 333 DDESIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLI----------DEPELHL-------------------- 382 (415)
T ss_pred CCCcCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEE----------eCccccC--------------------
Confidence 3447899999999999999999987764433111100 06666 6644444
Q ss_pred CCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChh
Q psy834 606 PNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPT 648 (926)
Q Consensus 606 ~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~ 648 (926)
+|.+-|- ..+-|.+.+...+..+++ ||+|.
T Consensus 383 -------Hp~~q~~------~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 383 -------HPQAQRK------FIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred -------CHHHHHH------HHHHHHHHhccCCCEEEEECCChh
Confidence 2333332 245577778877888888 99985
No 326
>PLN03211 ABC transporter G-25; Provisional
Probab=84.49 E-value=0.7 Score=53.77 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=53.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||.+++||..++. +| +|..+ ||-..-| |-.
T Consensus 204 ~~~LSgGerqRv~ia~aL~~---~P------~iLlL----------DEPtsgL------------------------D~~ 240 (659)
T PLN03211 204 IRGISGGERKRVSIAHEMLI---NP------SLLIL----------DEPTSGL------------------------DAT 240 (659)
T ss_pred CCCcChhhhhHHHHHHHHHh---CC------CEEEE----------eCCCCCc------------------------CHH
Confidence 46899999999999999887 67 78888 6655555 444
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhh--HHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTT--RSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t--~sr~~~~~~v 659 (926)
+.... ...|.+++....|=..++|.|-. ..-.|+.+-+
T Consensus 241 --~~~~l-------~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL 280 (659)
T PLN03211 241 --AAYRL-------VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL 280 (659)
T ss_pred --HHHHH-------HHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEe
Confidence 44445 56788888766676777999864 4456766543
No 327
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.48 E-value=0.9 Score=46.98 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=50.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
..+..||||||.+++||..++. +| +|..+ ||-.+-+ |
T Consensus 178 ~~~~~LSgGq~qrv~LAraL~~---~p------~lllL----------DEPt~gL------------------------D 214 (286)
T PRK14275 178 KNALGLSGGQQQRLCVARTLAV---EP------EILLL----------DEPTSAL------------------------D 214 (286)
T ss_pred CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------C
Confidence 3456899999999999988887 66 78888 7755555 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ -..|.++... -|=.+|+|++-.... +|+.+-+
T Consensus 215 ~~--~~~~l-------~~~L~~~~~~-~tvIivsH~~~~~~~~~d~i~~L 254 (286)
T PRK14275 215 PK--ATAKI-------EDLIQELRGS-YTIMIVTHNMQQASRVSDYTMFF 254 (286)
T ss_pred HH--HHHHH-------HHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 33 34444 4456666542 344455898877544 6766544
No 328
>PLN03232 ABC transporter C family member; Provisional
Probab=83.93 E-value=1.2 Score=56.15 Aligned_cols=74 Identities=9% Similarity=0.129 Sum_probs=49.7
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||= |++ .. ++|+.+ ||.-+-+ |.
T Consensus 739 ~~LSGGQkQRIaLAR--Aly--~~-----~~IlLL----------DEptSaL------------------------D~-- 773 (1495)
T PLN03232 739 VNISGGQKQRVSMAR--AVY--SN-----SDIYIF----------DDPLSAL------------------------DA-- 773 (1495)
T ss_pred cccCHHHHHHHHHHH--HHh--cC-----CCEEEE----------cCCcccc------------------------CH--
Confidence 479999999999985 333 23 589999 7766666 32
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
.+++..- .+.+.... ...|+-+|||+.-+...+|+.+-+
T Consensus 774 -~t~~~I~-----~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L 812 (1495)
T PLN03232 774 -HVAHQVF-----DSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILV 812 (1495)
T ss_pred -HHHHHHH-----HHHhhhhh-cCCEEEEEECChhhHHhCCEEEEE
Confidence 3443210 11222221 347999999999999999987755
No 329
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=83.87 E-value=1 Score=44.58 Aligned_cols=29 Identities=17% Similarity=0.057 Sum_probs=24.0
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
..+..||||||..++||..|+. +| ++..+
T Consensus 100 ~~~~~lS~G~~qrv~la~al~~---~p------~llll 128 (213)
T PRK15177 100 DRVSEYSVTMKTHLAFAINLLL---PC------RLYIA 128 (213)
T ss_pred chHhhcCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 3556799999999999999875 56 78888
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=83.68 E-value=1 Score=50.72 Aligned_cols=73 Identities=19% Similarity=0.092 Sum_probs=50.6
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||..++||..++. +| +|..+ ||-..-+
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------ 476 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQ---GG------NVLLL----------DEPTNDL------------------------ 476 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------
Confidence 34577999999999999998875 66 88888 7755544
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
|.. +...+ ++.|.++. .|-.+|+|+.-...+ +|+.+
T Consensus 477 D~~--~~~~l-------~~~l~~~~---~tvi~vtHd~~~~~~~~d~i~ 513 (556)
T PRK11819 477 DVE--TLRAL-------EEALLEFP---GCAVVISHDRWFLDRIATHIL 513 (556)
T ss_pred CHH--HHHHH-------HHHHHhCC---CeEEEEECCHHHHHHhCCEEE
Confidence 444 55555 55566653 365555999877666 46654
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.73 E-value=0.87 Score=50.18 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=25.5
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
.||||||++.|||=.|. +. +||..+ ||-.+-+
T Consensus 470 ~LSGGQrQRiaiARall----~~-----~~iliL----------DE~TSaL 501 (529)
T TIGR02868 470 RLSGGERQRLALARALL----AD-----APILLL----------DEPTEHL 501 (529)
T ss_pred cCCHHHHHHHHHHHHHh----cC-----CCEEEE----------eCCcccC
Confidence 69999999999986543 33 489999 8877777
No 332
>PTZ00243 ABC transporter; Provisional
Probab=82.65 E-value=0.99 Score=57.24 Aligned_cols=83 Identities=23% Similarity=0.222 Sum_probs=55.8
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||++.|||=.| .+ ++ ++|..+ ||-.+-+ |.+
T Consensus 1444 ~nLSgGQrQrLaLARAL--L~-~~-----~~ILlL----------DEATSaL------------------------D~~- 1480 (1560)
T PTZ00243 1444 SNYSVGQRQLMCMARAL--LK-KG-----SGFILM----------DEATANI------------------------DPA- 1480 (1560)
T ss_pred CcCCHHHHHHHHHHHHH--hc-CC-----CCEEEE----------eCCCccC------------------------CHH-
Confidence 57999999999998644 33 34 589999 7755544 322
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCCC
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSPN 668 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~~ 668 (926)
.++.- ++.|.+... ..|-..|+|..-|...+|+.+=+ ..+|.|.|.
T Consensus 1481 --te~~I------q~~L~~~~~-~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1481 --LDRQI------QATVMSAFS-AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred --HHHHH------HHHHHHHCC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHH
Confidence 33332 333444322 36778889999999999998755 345666654
No 333
>KOG2391|consensus
Probab=82.07 E-value=41 Score=38.16 Aligned_cols=53 Identities=23% Similarity=0.176 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 405 PLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY 457 (926)
Q Consensus 405 EfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF 457 (926)
++.+-..+|++.++.|+....+|...|+.|+.+.++++.++=+-++-.+++.|
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~ 295 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAI 295 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhh
Confidence 34556677788888888899999999999999999977776554444444433
No 334
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=82.04 E-value=1.1 Score=49.49 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=51.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||.+++||-.++- +| +|..+ ||-.+-| |-
T Consensus 136 ~~~~LSgGerQRv~IArAL~~---~P------~iLLL----------DEPtsgL------------------------D~ 172 (402)
T PRK09536 136 PVTSLSGGERQRVLLARALAQ---AT------PVLLL----------DEPTASL------------------------DI 172 (402)
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------CH
Confidence 457999999999999999885 67 78888 6644444 22
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. ....+ .++|.++....-|=.+++|..-...+ +|+.+-+
T Consensus 173 ~--~~~~l-------~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l 212 (402)
T PRK09536 173 N--HQVRT-------LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL 212 (402)
T ss_pred H--HHHHH-------HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 2 22334 56788887644454444888777766 5776544
No 335
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=81.90 E-value=1.1 Score=48.98 Aligned_cols=28 Identities=32% Similarity=0.262 Sum_probs=23.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
...+||||||++||||-.++. +| .|..+
T Consensus 146 ~~~~LSgGq~QRVaLARAL~~---~P------~lLLL 173 (377)
T PRK11607 146 KPHQLSGGQRQRVALARSLAK---RP------KLLLL 173 (377)
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 345899999999999999987 77 56666
No 336
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=81.34 E-value=1.5 Score=45.82 Aligned_cols=73 Identities=18% Similarity=0.037 Sum_probs=48.5
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||-.++. +| +|..+ ||-.+-+ |-.
T Consensus 137 ~~LS~G~~qrl~LaRall~---~p------~illl----------DEpts~L------------------------D~~- 172 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLS---KA------KILLL----------DEPSAHL------------------------DPI- 172 (275)
T ss_pred CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECccccC------------------------CHH-
Confidence 4899999999999988876 56 77888 6655555 333
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.++.. .-|=.+|+|..-+..-.|+.+-+
T Consensus 173 -~~~~l-------~~~l~~~~~-~~tii~isH~~~~i~~~dri~vl 209 (275)
T cd03289 173 -TYQVI-------RKTLKQAFA-DCTVILSEHRIEAMLECQRFLVI 209 (275)
T ss_pred -HHHHH-------HHHHHHhcC-CCEEEEEECCHHHHHhCCEEEEe
Confidence 23333 455555543 34545559998877667766544
No 337
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=81.30 E-value=37 Score=31.29 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=57.4
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH--TRRQKFENMYDFVNDNIDAT 456 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK--EKrEAFmkTFKQVNenFsEI 456 (926)
++......+. -|+.-|..+..+|.++.+....+....++|......++..+..|+. .....|+.+-..+..+-..+
T Consensus 15 el~~t~~d~~-LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 15 ELEATNEDYN-LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKEL 92 (99)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666 7777778899999999999999999999999988888888888886 45555666655555554443
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=81.24 E-value=1.2 Score=51.42 Aligned_cols=71 Identities=20% Similarity=0.053 Sum_probs=49.1
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||+++|||-.|+- +| +|..+ ||--+-+ |..
T Consensus 581 ~~LSgGqkQRl~iARal~~---~p------~illL----------DEpts~L------------------------D~~- 616 (659)
T TIGR00954 581 DVLSGGEKQRIAMARLFYH---KP------QFAIL----------DECTSAV------------------------SVD- 616 (659)
T ss_pred cCCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------CHH-
Confidence 5899999999999988875 66 88888 6644444 322
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .+.|.+ ...|-.+|+|++-+....|+.+-+
T Consensus 617 -~~~~l-------~~~l~~---~~~tvI~isH~~~~~~~~d~il~l 651 (659)
T TIGR00954 617 -VEGYM-------YRLCRE---FGITLFSVSHRKSLWKYHEYLLYM 651 (659)
T ss_pred -HHHHH-------HHHHHH---cCCEEEEEeCchHHHHhCCEEEEE
Confidence 23333 122333 245667779999999888887755
No 339
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=81.11 E-value=1.1 Score=49.27 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=49.3
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+.+||||||.+++||..||. +| .|..+ ||-.+-+ |..
T Consensus 162 ~~~LSgGq~QRV~LARALa~---~P------~ILLl----------DEPts~L------------------------D~~ 198 (382)
T TIGR03415 162 PGELSGGMQQRVGLARAFAM---DA------DILLM----------DEPFSAL------------------------DPL 198 (382)
T ss_pred hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCccC------------------------CHH
Confidence 35899999999999999985 66 77777 6655444 222
Q ss_pred CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
....+ ++.|.++... .-|=.+|+|..-...+ .|+.+-+
T Consensus 199 --~r~~l-------~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl 238 (382)
T TIGR03415 199 --IRTQL-------QDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM 238 (382)
T ss_pred --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22233 6667777654 4455556998776444 5665433
No 340
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=80.98 E-value=2.1 Score=47.64 Aligned_cols=29 Identities=10% Similarity=-0.090 Sum_probs=24.9
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+.+..||||||.+++||..|+. +| +|..+
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~---~p------~lLlL 179 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFS---NP------DILLL 179 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 3567999999999999999875 66 78888
No 341
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=80.97 E-value=1.3 Score=51.15 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=52.9
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||..++||.-|+. +| ++..+ ||-..-+ |..
T Consensus 143 ~~LS~Gq~qrv~LAraL~~---~P------~lLll----------DEP~~gL------------------------D~~- 178 (648)
T PRK10535 143 SQLSGGQQQRVSIARALMN---GG------QVILA----------DEPTGAL------------------------DSH- 178 (648)
T ss_pred ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------CHH-
Confidence 3899999999999998887 67 66777 6655555 444
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+...+ .++|.++....-|=.+|+|++.....+|+.+-+
T Consensus 179 -s~~~l-------~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l 216 (648)
T PRK10535 179 -SGEEV-------MAILHQLRDRGHTVIIVTHDPQVAAQAERVIEI 216 (648)
T ss_pred -HHHHH-------HHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEE
Confidence 44555 667777765444545559999888778877544
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=80.74 E-value=2 Score=50.72 Aligned_cols=30 Identities=23% Similarity=0.177 Sum_probs=25.7
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
.+.+..||||||+++|||..|+. +| +|..+
T Consensus 622 ~~~~~~LSgGqkqRvaLAraL~~---~p------~lLLL 651 (718)
T PLN03073 622 LQPMYTLSGGQKSRVAFAKITFK---KP------HILLL 651 (718)
T ss_pred cCCccccCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 45688999999999999998885 66 88888
No 343
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.65 E-value=0.83 Score=50.52 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=23.5
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHhcccc
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
.|......|||||||++||+|=-+|. +|
T Consensus 133 dk~~~yP~qLSGGQKQRVaIARALa~---~P 160 (339)
T COG1135 133 DKADRYPAQLSGGQKQRVAIARALAN---NP 160 (339)
T ss_pred hhhccCchhcCcchhhHHHHHHHHhc---CC
Confidence 45556678999999999999998887 67
No 344
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=80.53 E-value=1.5 Score=45.68 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=50.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||..++||..++- +| ++..+ ||-..-+ |-
T Consensus 130 ~~~~LS~G~~qrv~la~al~~---~p------~lliL----------DEPt~gL------------------------D~ 166 (301)
T TIGR03522 130 KIGQLSKGYRQRVGLAQALIH---DP------KVLIL----------DEPTTGL------------------------DP 166 (301)
T ss_pred chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 357899999999999988866 77 77788 6644444 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.. .-|=.+++|..-...+ +|+.+-+
T Consensus 167 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l 205 (301)
T TIGR03522 167 N--QLVEI-------RNVIKNIGK-DKTIILSTHIMQEVEAICDRVIII 205 (301)
T ss_pred H--HHHHH-------HHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 3 45555 567777765 3443444888876655 5766544
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=80.51 E-value=1.5 Score=50.36 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=25.2
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+.+..||||||++||||-.|+. +| +|..+
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~---~P------~lLLL 180 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVS---NP------DVLLL 180 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 4678999999999999999986 66 78888
No 346
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=80.29 E-value=1.1 Score=47.53 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.0
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
.+.+..||||||++|.||..+|= +| |+-.+
T Consensus 133 ~r~~~~LSGGerQrv~iArALaQ---~~------~iLLL 162 (258)
T COG1120 133 DRPVDELSGGERQRVLIARALAQ---ET------PILLL 162 (258)
T ss_pred cCcccccChhHHHHHHHHHHHhc---CC------CEEEe
Confidence 45689999999999999999884 44 77777
No 347
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=79.74 E-value=1.3 Score=57.40 Aligned_cols=78 Identities=21% Similarity=0.112 Sum_probs=59.6
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
+.+..|||||+++++||-.++. +| . .++++ ||-.+=|
T Consensus 472 R~~~tLSGGE~QRV~LAraL~~---~p-----~g~lLIL----------DEPTagL------------------------ 509 (1809)
T PRK00635 472 RALATLSGGEQERTALAKHLGA---EL-----IGITYIL----------DEPSIGL------------------------ 509 (1809)
T ss_pred CchhhCCHHHHHHHHHHHHHhc---CC-----CCcEEEE----------ECCccCC------------------------
Confidence 4567999999999999999874 34 2 58999 7766666
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.+ ...++ -+.|.++....+|=.+|+|.+-.+.-+|+.+-+
T Consensus 510 D~~--~~~~L-------~~lL~~L~~~G~TVIvVeHd~~vi~~aDrVi~L 550 (1809)
T PRK00635 510 HPQ--DTHKL-------INVIKKLRDQGNTVLLVEHDEQMISLADRIIDI 550 (1809)
T ss_pred CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCcHHHHHhCCEEEEE
Confidence 444 56666 677888887778866669999888878888655
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=79.60 E-value=1.7 Score=54.91 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=72.4
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||++.+||=.+. +. +||..+ ||-.+-+ |..
T Consensus 1352 ~nLSgGQrQrL~LARALL----r~-----~~ILlL----------DEaTS~l------------------------D~~- 1387 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSIL----SK-----AKILLL----------DEPSAHL------------------------DPV- 1387 (1490)
T ss_pred CcCCHHHHHHHHHHHHHh----CC-----CCEEEE----------eCCcccC------------------------CHH-
Confidence 379999999999887443 34 689999 8866655 333
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCCCccccccccccccccccCCCccc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSPNTRSRVQSSANIRSAEQGSPISR 690 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (926)
+-... +..|.+... ..|-..|+|..-|...+|+.+-+ ..+|.|.|..--. ..
T Consensus 1388 -Te~~I-------~~~L~~~~~-~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~----------------~~ 1442 (1490)
T TIGR01271 1388 -TLQII-------RKTLKQSFS-NCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN----------------ET 1442 (1490)
T ss_pred -HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc----------------CC
Confidence 22222 444555433 35777779999999999998766 2345555532110 11
Q ss_pred cccceeeccccccchhhhhhhccCCCCCCCcc
Q psy834 691 TRFTKYTLQSTKSNLSRRAQANNSAQNPLPEV 722 (926)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (926)
..|.+-.-+..+.++---+.+|.+...|-|.+
T Consensus 1443 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1474 (1490)
T TIGR01271 1443 SLFKQAMSAADRLKLFPLHRRNSSKRKPQPKI 1474 (1490)
T ss_pred cHHHHHHHHhChhcccchhhhcccccCCCchH
Confidence 23544444444444444455566666665543
No 349
>PLN03232 ABC transporter C family member; Provisional
Probab=79.33 E-value=1.8 Score=54.69 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=56.0
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||+++|||=.+- +. ++|..+ ||--+-+ |-.
T Consensus 1370 ~~LSgGQrQrlaLARALL----r~-----~~ILIL----------DEATSaL------------------------D~~- 1405 (1495)
T PLN03232 1370 ENFSVGQRQLLSLARALL----RR-----SKILVL----------DEATASV------------------------DVR- 1405 (1495)
T ss_pred CCCCHHHHHHHHHHHHHH----hC-----CCEEEE----------ECCcccC------------------------CHH-
Confidence 479999999999886554 33 489999 7766555 322
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCCC
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSPN 668 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~~ 668 (926)
-++.- ++.|.+... ..|-..|+|..-|...+|+.+=+ ...|.|.|.
T Consensus 1406 --Te~~I------q~~L~~~~~-~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~ 1454 (1495)
T PLN03232 1406 --TDSLI------QRTIREEFK-SCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQ 1454 (1495)
T ss_pred --HHHHH------HHHHHHHcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 23321 344555432 36778889999999999998866 345666553
No 350
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=79.29 E-value=2.6 Score=50.13 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=57.6
Q ss_pred hccccccCchhhhhhhhCCCCCCCcccCCccccCCCccccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy834 340 KKSCISFSPRRESLDSIGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLK- 418 (926)
Q Consensus 340 ~K~~il~skR~E~IRkLGsLPeeA~s~ekYss~eiPll~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrE- 418 (926)
.+.+.+|.+...+-..|..||..-..|+..... -...+|..|..+++ .-.++|+.+..+.+.|++++-
T Consensus 199 ~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~-------~fp~a~e~L~~r~~----~L~~k~~~L~~e~~~LK~ELie 267 (683)
T PF08580_consen 199 SSLLALFARMQPLRASLDFLPMRIEEFQSRAES-------IFPSACEELEDRYE----RLEKKWKKLEKEAESLKKELIE 267 (683)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Confidence 334445555555555567788865433332222 12234444442221 123334444444444433332
Q ss_pred ------------HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 419 ------------ALYKRRWILQKKFDKVKHT------------RRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 419 ------------ELdKekeSIrELIEeLDKE------------KrEAFmkTFKQVNenFsEIFKeLV 461 (926)
++.+..+++++.+.+|+.. -.+.+...++.|.++|.-||+.++
T Consensus 268 dRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~ 334 (683)
T PF08580_consen 268 DRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARV 334 (683)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2233444455555555555 356777788899999999998876
No 351
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=79.01 E-value=1.3 Score=46.67 Aligned_cols=78 Identities=23% Similarity=0.206 Sum_probs=50.4
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNP 606 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~ 606 (926)
|+..+...+||||||+.||||=.| ++. .||..+ ||==+-|
T Consensus 121 ~~~~RLP~~LSGGqRQRvALARcl----vR~-----~PilLL----------DEPFsAL--------------------- 160 (231)
T COG3840 121 GFLKRLPGELSGGQRQRVALARCL----VRE-----QPILLL----------DEPFSAL--------------------- 160 (231)
T ss_pred hHhhhCccccCchHHHHHHHHHHH----hcc-----CCeEEe----------cCchhhc---------------------
Confidence 445566789999999999999765 466 789988 7644444
Q ss_pred CCCCCCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhh
Q psy834 607 NPNSRANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSS 656 (926)
Q Consensus 607 ~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~ 656 (926)
|-+ + |- ..-.++..++.+ ..|=..|||+|---.|+...
T Consensus 161 ---dP~---L-R~-----eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~ 199 (231)
T COG3840 161 ---DPA---L-RA-----EMLALVSQLCDERKMTLLMVTHHPEDAARIADR 199 (231)
T ss_pred ---CHH---H-HH-----HHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc
Confidence 222 1 10 012344445544 45667779999888776543
No 352
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=78.97 E-value=24 Score=34.56 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=62.9
Q ss_pred HHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy834 384 VCRQHDVKMQLQL----NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQK-FENMYDFVNDNIDATYK 458 (926)
Q Consensus 384 L~~eL~~KLk~vn----kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEA-FmkTFKQVNenFsEIFK 458 (926)
+..+++ .++.+. .+--..|++...+-+.+..++.++.+-...|.+.++.|...+..+ |...|+.+-+.+..+++
T Consensus 25 v~~~l~-~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~ 103 (126)
T PF09403_consen 25 VESELN-QLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLN 103 (126)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 444444 444443 567778999999999999999999999999999999999887766 46789999999999999
Q ss_pred Hhh
Q psy834 459 VHL 461 (926)
Q Consensus 459 eLV 461 (926)
.|-
T Consensus 104 ~L~ 106 (126)
T PF09403_consen 104 KLD 106 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 353
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=78.83 E-value=1.8 Score=50.50 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=58.0
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..|||||++.+|||=.|- +| ++++.+ ||--|=+ |--
T Consensus 455 ~~LSgGQ~QRlaLARAll----~~-----~~l~ll----------DEpTA~L------------------------D~e- 490 (559)
T COG4988 455 AGLSGGQAQRLALARALL----SP-----ASLLLL----------DEPTAHL------------------------DAE- 490 (559)
T ss_pred CCCCHHHHHHHHHHHHhc----CC-----CCEEEe----------cCCccCC------------------------CHh-
Confidence 369999999999997663 67 889999 6633333 221
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee---eecCCCCC
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ---SAEQGSPN 668 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~---~aE~G~~~ 668 (926)
+ +. -..+.|-+++.. .|=+.|||...++..||+.+=+. .+|+|-+.
T Consensus 491 -t-E~------~i~~~l~~l~~~-ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~ 539 (559)
T COG4988 491 -T-EQ------IILQALQELAKQ-KTVLVITHRLEDAADADRIVVLDNGRLVEQGTHE 539 (559)
T ss_pred -H-HH------HHHHHHHHHHhC-CeEEEEEcChHHHhcCCEEEEecCCceeccCCHH
Confidence 1 11 125566777776 78888899999999999987554 45666554
No 354
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=77.90 E-value=2 Score=49.66 Aligned_cols=29 Identities=24% Similarity=0.150 Sum_probs=25.1
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+.+..||||||.+++||..|+. +| .|..+
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~---~P------~lLLL 173 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALIC---RS------DLLLL 173 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHcc---CC------CEEEE
Confidence 4677999999999999999986 67 67888
No 355
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.57 E-value=53 Score=29.45 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=41.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTR 438 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEK 438 (926)
+++..+..|+|.+..+..+.++|..+...|..+...|....+.|+.++
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 566666699999999999999999999999999999999988888554
No 356
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=77.47 E-value=42 Score=32.20 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=57.0
Q ss_pred ccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy834 378 WQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTRR--------QKFENMYD 447 (926)
Q Consensus 378 ~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEKr--------EAFmkTFK 447 (926)
...+..+.++++ +++..+.++..+++++.++......+... +..-...|...++.|+.... +.|...|.
T Consensus 17 ~~~l~~l~~~~~-~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~ 95 (165)
T PF01025_consen 17 EEELEELEKEIE-ELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLE 95 (165)
T ss_dssp CCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 457888999999 99999888999999988877665443332 23334444455555544432 56778888
Q ss_pred HHHHHHHHHHHHh
Q psy834 448 FVNDNIDATYKVH 460 (926)
Q Consensus 448 QVNenFsEIFKeL 460 (926)
.|.+.|..+|...
T Consensus 96 ~~~~~l~~~L~~~ 108 (165)
T PF01025_consen 96 MILKQLEDILEKN 108 (165)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC
Confidence 8888888888775
No 357
>PRK11637 AmiB activator; Provisional
Probab=77.05 E-value=31 Score=38.18 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTR---RQKFENMYDFVNDNIDATYK 458 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEK---rEAFmkTFKQVNenFsEIFK 458 (926)
..+..+++.+..++..+..+++++...+..+...|+.++.+. .+.+....+.+...+..+|+
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555432 23444555556666666665
No 358
>PRK14156 heat shock protein GrpE; Provisional
Probab=76.74 E-value=35 Score=35.00 Aligned_cols=81 Identities=6% Similarity=0.069 Sum_probs=55.0
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEAD--LKALYKRRWILQKKFDKVKHTRR-----QKFENMYDFVND 451 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaR--rEELdKekeSIrELIEeLDKEKr-----EAFmkTFKQVNe 451 (926)
..++.++.++. .++..++++..+|+.+.++...-..+ .-...+-..+|...++.|++-.. +.|...|+-|-+
T Consensus 34 ~~l~~l~~e~~-elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~~~l~~Gv~mi~k 112 (177)
T PRK14156 34 SELELANERAD-EFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEGLTDDVKKGLEMVQE 112 (177)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCcccchhHHHHHHHHHH
Confidence 46677888888 88888899999999998776554433 22233344445555555554332 457778888888
Q ss_pred HHHHHHHHh
Q psy834 452 NIDATYKVH 460 (926)
Q Consensus 452 nFsEIFKeL 460 (926)
.|..+|.++
T Consensus 113 ~l~~~L~~~ 121 (177)
T PRK14156 113 SLIQALKEE 121 (177)
T ss_pred HHHHHHHHC
Confidence 888888875
No 359
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=76.74 E-value=2.1 Score=55.67 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=58.5
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
-+.+..||||||.+++||-.++-...+| .|+.+ ||-..=|
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P------~LLIL----------DEPTsGL------------------------ 843 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLAPSKKP------TLYVL----------DEPTTGL------------------------ 843 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCC------CEEEE----------eCCCCCC------------------------
Confidence 3567889999999999999887423455 78888 7744434
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.+ ++.++ .+.|.++.....|=.+|+|+.-...-+|+.+-+
T Consensus 844 D~~--~~~~L-------l~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L 884 (1809)
T PRK00635 844 HTH--DIKAL-------IYVLQSLTHQGHTVVIIEHNMHVVKVADYVLEL 884 (1809)
T ss_pred CHH--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence 444 66777 677888877777866669998877666765433
No 360
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.68 E-value=2.8 Score=42.70 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=49.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||.+++||..|+. +| ++..+ ||-..-+ |.
T Consensus 150 ~~~~LS~G~~qrl~laral~~---~P------~llll----------DEPt~~L------------------------D~ 186 (257)
T PRK14246 150 PASQLSGGQQQRLTIARALAL---KP------KVLLM----------DEPTSMI------------------------DI 186 (257)
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCCccC------------------------CH
Confidence 345799999999999998887 66 66666 5544444 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +..-+ .+.|.++.. ..|-.+|+|++-...+ +|+.+-+
T Consensus 187 ~--~~~~l-------~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l 225 (257)
T PRK14246 187 V--NSQAI-------EKLITELKN-EIAIVIVSHNPQQVARVADYVAFL 225 (257)
T ss_pred H--HHHHH-------HHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEE
Confidence 3 33333 455666654 3566666999877644 6666544
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=76.20 E-value=2.2 Score=54.48 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=56.5
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||+++|||=.+- +. ++|..+ ||-.+-+ |-.
T Consensus 1373 ~nLSgGQrQrlaLARALL----r~-----p~ILIL----------DEATSaL------------------------D~~- 1408 (1622)
T PLN03130 1373 ENFSVGQRQLLSLARALL----RR-----SKILVL----------DEATAAV------------------------DVR- 1408 (1622)
T ss_pred CCCCHHHHHHHHHHHHHH----cC-----CCEEEE----------ECCCCCC------------------------CHH-
Confidence 489999999999986554 33 489999 8866666 322
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee---eecCCCCC
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ---SAEQGSPN 668 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~---~aE~G~~~ 668 (926)
-++. .++.|.+... ..|-..|+|..-|...+|+.+=+. .+|.|.|.
T Consensus 1409 --Te~~------Iq~~I~~~~~-~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1409 --TDAL------IQKTIREEFK-SCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred --HHHH------HHHHHHHHCC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 2222 1445555533 367788899999999999987653 35666554
No 362
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=75.78 E-value=2.6 Score=44.21 Aligned_cols=27 Identities=30% Similarity=0.148 Sum_probs=23.2
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+.+||||||.+++||..++. +| ++..+
T Consensus 157 ~~~LSgGq~qrv~lAraL~~---~p------~iLiL 183 (282)
T cd03291 157 GITLSGGQRARISLARAVYK---DA------DLYLL 183 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 46899999999999998885 66 78888
No 363
>PRK11637 AmiB activator; Provisional
Probab=75.75 E-value=20 Score=39.60 Aligned_cols=64 Identities=9% Similarity=0.157 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 383 GVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYD 447 (926)
Q Consensus 383 eL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFK 447 (926)
.+..++. .+...+..+..++.....++..+..+++.+.+++..+++.|+..+..-..++...|.
T Consensus 72 ~~~~~l~-~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 72 SLLAQLK-KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 555555566666666666666666777777767666666666666666666666665
No 364
>PRK14153 heat shock protein GrpE; Provisional
Probab=74.99 E-value=31 Score=35.82 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=53.6
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR--------RQKFENMYDF 448 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK--------rEAFmkTFKQ 448 (926)
..++++..++. .++..++++..+|+.+.++...-..+..+ +..-+.+|...++.|++-. ...|...|+-
T Consensus 40 ~ei~~l~~e~~-elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~~~l~~Gvem 118 (194)
T PRK14153 40 SETEKCREEIE-SLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTAEDMNSIVEGIEM 118 (194)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHH
Confidence 46678888888 88888899999999998877654433332 2223333333344443322 1457778888
Q ss_pred HHHHHHHHHHHh
Q psy834 449 VNDNIDATYKVH 460 (926)
Q Consensus 449 VNenFsEIFKeL 460 (926)
|-+.|..+|.++
T Consensus 119 i~k~~~~vL~k~ 130 (194)
T PRK14153 119 VSKQFFSILEKY 130 (194)
T ss_pred HHHHHHHHHHHC
Confidence 888888888875
No 365
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=74.67 E-value=2.9 Score=44.22 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=50.3
Q ss_pred CCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 526 QGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPN 605 (926)
Q Consensus 526 PGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~ 605 (926)
.+|...-..+||||||+.||||=-+.= +| ++..- |- .-|-|||++
T Consensus 128 ~~k~~~lP~~LSGGEQQRvaIARAiV~---~P------~vLlA---DE---PTGNLDp~~-------------------- 172 (223)
T COG2884 128 KHKARALPSQLSGGEQQRVAIARAIVN---QP------AVLLA---DE---PTGNLDPDL-------------------- 172 (223)
T ss_pred chhhhcCccccCchHHHHHHHHHHHcc---CC------CeEee---cC---CCCCCChHH--------------------
Confidence 455555678999999999999965432 44 22222 00 013333333
Q ss_pred CCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhh
Q psy834 606 PNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQS 655 (926)
Q Consensus 606 ~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~ 655 (926)
-.+. -+++.|+-...-|=.+.||+--.|.+|..
T Consensus 173 ----------s~~i-------m~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 173 ----------SWEI-------MRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred ----------HHHH-------HHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 2344 67888998877776666999999999864
No 366
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=74.66 E-value=2.2 Score=49.01 Aligned_cols=72 Identities=19% Similarity=0.086 Sum_probs=49.1
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||.-++- +| ++..+ ||-..-| |-.
T Consensus 165 ~~LSgGqrkRvsia~aL~~---~p------~vlll----------DEPtsgL------------------------D~~- 200 (617)
T TIGR00955 165 KGLSGGERKRLAFASELLT---DP------PLLFC----------DEPTSGL------------------------DSF- 200 (617)
T ss_pred CCcCcchhhHHHHHHHHHc---CC------CEEEe----------eCCCcch------------------------hHH-
Confidence 5799999999999998875 66 67777 5533333 222
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChh--hHHhhhhhc
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT--TRSRVQSSL 657 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~--t~sr~~~~~ 657 (926)
+-... ...|.+++....|-.+++|.|- .....|+.+
T Consensus 201 -~~~~l-------~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ 238 (617)
T TIGR00955 201 -MAYSV-------VQVLKGLAQKGKTIICTIHQPSSELFELFDKII 238 (617)
T ss_pred -HHHHH-------HHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE
Confidence 22233 5667788776666666699984 467778774
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=74.61 E-value=2.6 Score=53.40 Aligned_cols=75 Identities=20% Similarity=0.063 Sum_probs=50.5
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
...||||||+++|||-.++- +| +|+.+ ||.-+-+ |.
T Consensus 546 g~~LSgGqkqRi~lARAl~~---~~------~illL----------Dep~saL------------------------D~- 581 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYK---DA------DLYLL----------DSPFTHL------------------------DV- 581 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH-
Confidence 46899999999999987764 44 78999 7765555 32
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
.+.+.... ..+.++. ...|..+|||++-.....|+.+-+
T Consensus 582 --~~~~~i~~-----~~l~~~~-~~~tvilvtH~~~~~~~ad~ii~l 620 (1490)
T TIGR01271 582 --VTEKEIFE-----SCLCKLM-SNKTRILVTSKLEHLKKADKILLL 620 (1490)
T ss_pred --HHHHHHHH-----HHHHHHh-cCCeEEEEeCChHHHHhCCEEEEE
Confidence 33332111 0122222 257889999999988888887755
No 368
>PTZ00243 ABC transporter; Provisional
Probab=74.31 E-value=2.7 Score=53.48 Aligned_cols=76 Identities=13% Similarity=0.036 Sum_probs=49.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||+++|||-.++. +| +|+.+ ||...-+ |.
T Consensus 779 ~g~~LSGGQkqRvaLARAl~~---~p------~illL----------DEP~saL------------------------D~ 815 (1560)
T PTZ00243 779 KGVNLSGGQKARVSLARAVYA---NR------DVYLL----------DDPLSAL------------------------DA 815 (1560)
T ss_pred CCCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCccccC------------------------CH
Confidence 356799999999999987775 55 78998 7765555 32
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. ...++.+ +.+.... ...|..+|||++-.....|+.+-+
T Consensus 816 ~--~~~~i~~------~~~~~~~-~~~TvIlvTH~~~~~~~ad~ii~l 854 (1560)
T PTZ00243 816 H--VGERVVE------ECFLGAL-AGKTRVLATHQVHVVPRADYVVAL 854 (1560)
T ss_pred H--HHHHHHH------HHHHHhh-CCCEEEEEeCCHHHHHhCCEEEEE
Confidence 2 1122210 0111111 246888899999998888876654
No 369
>PRK14155 heat shock protein GrpE; Provisional
Probab=73.93 E-value=48 Score=34.80 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=54.9
Q ss_pred cccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----------HHHHH
Q psy834 377 RWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR-----------RQKFE 443 (926)
Q Consensus 377 l~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK-----------rEAFm 443 (926)
+.+.++.++.++. .++..++++..+|+.+.++.+.-..+..+ +.+-...|...++.|++-. .+.|.
T Consensus 18 l~~~l~~le~e~~-elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~ 96 (208)
T PRK14155 18 AAQEIEALKAEVA-ALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVKNFI 96 (208)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHHHHH
Confidence 3456778888888 88888899999999998877655433322 2333344444444444332 24677
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy834 444 NMYDFVNDNIDATYKVH 460 (926)
Q Consensus 444 kTFKQVNenFsEIFKeL 460 (926)
..|+-|-+.|..+|+++
T Consensus 97 ~Gvemi~k~~~~~L~k~ 113 (208)
T PRK14155 97 IGVEMTEKELLGAFERN 113 (208)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 77888888888888875
No 370
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=73.85 E-value=2.4 Score=47.19 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.2
Q ss_pred cccccCchhHHHHHHHHHHHHHhcccc
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
....||||||+++||||=.+|+ .|
T Consensus 133 ryP~QLSGGQrQRVALARALA~---eP 156 (345)
T COG1118 133 RYPAQLSGGQRQRVALARALAV---EP 156 (345)
T ss_pred cCchhcChHHHHHHHHHHHhhc---CC
Confidence 3567999999999999999998 67
No 371
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=73.75 E-value=42 Score=36.16 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDN------- 452 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNen------- 452 (926)
.+.++..++. +......+|-++|++..+.++....+ ..++...+-+.+..++.+|-.-|-..+..+..+
T Consensus 169 q~~K~~~kle-K~~~~~~k~~~~Y~~~v~~L~~~~~~---w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~~l~~~~~~ 244 (258)
T cd07681 169 QLRKLQDRVE-KCTQEAEKAKEQYEKALEELNRYNPR---YMEDMEQAFEICQEAERKRLCFFKEMLLDLHQHLDLSSSD 244 (258)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5566777777 67766677777787776666554444 456788888999999999999999998887765
Q ss_pred -HHHHHHHh
Q psy834 453 -IDATYKVH 460 (926)
Q Consensus 453 -FsEIFKeL 460 (926)
|..||..|
T Consensus 245 ~~~~~~~~l 253 (258)
T cd07681 245 SFHALYRDL 253 (258)
T ss_pred cHHHHHHHH
Confidence 55566665
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=72.77 E-value=2 Score=49.60 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=28.5
Q ss_pred EeCCCCc-ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 523 CTPQGRS-YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 523 VSPPGKr-~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+-|+++. .+.+..||||||..++||.++.- | .=|.+|
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~----~-----pNvLiL 463 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ----P-----PNLLLL 463 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhcc----C-----CCEEEE
Confidence 3455554 47899999999999999998865 4 456777
No 373
>PRK14139 heat shock protein GrpE; Provisional
Probab=72.50 E-value=67 Score=33.24 Aligned_cols=81 Identities=7% Similarity=0.030 Sum_probs=53.4
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKAL--YKRRWILQKKFDKVKHTR------RQKFENMYDFVN 450 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEEL--dKekeSIrELIEeLDKEK------rEAFmkTFKQVN 450 (926)
..++.++.++. .++..++++..+|+.+..+...-..+..+. .+-..+|...++.|++-. .+.|...|+-|-
T Consensus 39 ~~l~~le~e~~-elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~ 117 (185)
T PRK14139 39 AELAEAEAKAA-ELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADESGDLEKLREGVELTL 117 (185)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHH
Confidence 35677777888 788888899999999988876655444332 233344444444444432 245777777888
Q ss_pred HHHHHHHHHh
Q psy834 451 DNIDATYKVH 460 (926)
Q Consensus 451 enFsEIFKeL 460 (926)
+.|..+|+++
T Consensus 118 k~l~~vL~k~ 127 (185)
T PRK14139 118 KQLTSAFEKG 127 (185)
T ss_pred HHHHHHHHHC
Confidence 8888888775
No 374
>PLN03073 ABC transporter F family; Provisional
Probab=72.40 E-value=2.8 Score=49.64 Aligned_cols=75 Identities=21% Similarity=0.094 Sum_probs=49.4
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||.+++||-.++. +| .|..+ ||-..=|
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~---~p------~lLlL----------DEPt~~L------------------------ 375 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFI---EP------DLLLL----------DEPTNHL------------------------ 375 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------
Confidence 34568999999999999999886 77 67888 6644333
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
|.. +...+ .+.|.+. ..|=++|+|..-.... +++.+-+
T Consensus 376 D~~--~~~~l-------~~~L~~~---~~tviivsHd~~~l~~~~d~i~~l 414 (718)
T PLN03073 376 DLH--AVLWL-------ETYLLKW---PKTFIVVSHAREFLNTVVTDILHL 414 (718)
T ss_pred CHH--HHHHH-------HHHHHHc---CCEEEEEECCHHHHHHhCCEEEEE
Confidence 333 34444 3334443 3465666999877666 4666544
No 375
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=72.07 E-value=3.7 Score=43.36 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=52.2
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||+|..++||+-|+- +| .|..+ || |+-|=.|.
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~---~P------~lliL----------DE---Pt~GLDp~------------------ 170 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLH---DP------ELLIL----------DE---PTSGLDPE------------------ 170 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------CC---CCcCCCHH------------------
Confidence 45688999999999999988876 77 67777 44 66443332
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHhh
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSRV 653 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr~ 653 (926)
....+ .+.|.+++...+ |=++.+|.+-....+
T Consensus 171 -----~~~~~-------~~~l~~l~~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 171 -----SRREI-------WELLRELAKEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred -----HHHHH-------HHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence 23345 678999999886 545558988777774
No 376
>PRK14143 heat shock protein GrpE; Provisional
Probab=71.83 E-value=50 Score=35.26 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTRR---------QKFENMYDF 448 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEKr---------EAFmkTFKQ 448 (926)
.++.++.++. .++..++++..+|+.|+++...-..+..+ ...-+..|...++.|++-.. ..|...|+-
T Consensus 75 el~~l~~e~~-elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~ 153 (238)
T PRK14143 75 ELESLKQELE-ELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQG 153 (238)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHH
Confidence 3445555666 66666678888888887776554333222 22233334444444444321 356667777
Q ss_pred HHHHHHHHHHHh
Q psy834 449 VNDNIDATYKVH 460 (926)
Q Consensus 449 VNenFsEIFKeL 460 (926)
|-+.|..+|+++
T Consensus 154 i~k~l~~~L~k~ 165 (238)
T PRK14143 154 LYKQLVDVLKRL 165 (238)
T ss_pred HHHHHHHHHHHC
Confidence 777777777765
No 377
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=71.78 E-value=3.6 Score=51.92 Aligned_cols=74 Identities=8% Similarity=0.000 Sum_probs=49.9
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||.+++||.-++. +| .+|..+ ||-.+=| |..
T Consensus 901 ~LSgGqrqRl~Ia~aL~~---~P-----~~iLlL----------DEPTsgL------------------------D~~-- 936 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVA---KP-----KLLLFL----------DEPTSGL------------------------DSQ-- 936 (1394)
T ss_pred CCCHHHhhHHHHHHHHHc---CC-----CeEEEE----------cCCCCCC------------------------CHH--
Confidence 699999999999998876 66 447788 6633333 322
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhH--Hhhhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR--SRVQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~--sr~~~~~~v 659 (926)
+-... .+.|.+++....|=..++|.|-+. ...|+++-+
T Consensus 937 ~~~~i-------~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L 976 (1394)
T TIGR00956 937 TAWSI-------CKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL 976 (1394)
T ss_pred HHHHH-------HHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEE
Confidence 22333 667888876655655559998753 567877544
No 378
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=71.51 E-value=2.5 Score=53.32 Aligned_cols=76 Identities=12% Similarity=-0.007 Sum_probs=54.2
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+|+||..++. +| ++..+ ||-..-| |-
T Consensus 206 ~~~~LSGGerkRvsIA~aL~~---~p------~vlll----------DEPTsgL------------------------D~ 242 (1394)
T TIGR00956 206 FVRGVSGGERKRVSIAEASLG---GA------KIQCW----------DNATRGL------------------------DS 242 (1394)
T ss_pred cCCCCCcccchHHHHHHHHHh---CC------CEEEE----------eCCCCCc------------------------CH
Confidence 356899999999999998886 67 78888 7765555 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChh--hHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPT--TRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~--t~sr~~~~~~v 659 (926)
+ +...+ .+.|.+++.. ..|=.+++|+|. ...-.|+.+-+
T Consensus 243 ~--~~~~i-------~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L 284 (1394)
T TIGR00956 243 A--TALEF-------IRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL 284 (1394)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Confidence 4 55555 6778888874 455455589873 44456776544
No 379
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=70.56 E-value=2 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.221 Sum_probs=21.1
Q ss_pred ccccccCchhHHHHHHHHHHHHHhcccc
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
.+...+|||||++.||||=-+|. +|
T Consensus 131 ~R~p~qLSGGQqQRVALARAL~~---~P 155 (352)
T COG3842 131 DRKPHQLSGGQQQRVALARALVP---EP 155 (352)
T ss_pred hhChhhhChHHHHHHHHHHHhhc---Cc
Confidence 35678999999999999987776 66
No 380
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.28 E-value=53 Score=35.80 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFD 432 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIE 432 (926)
+...+..++. +++.+-..+.+++.+++.+.+++.+++++++.+...+.+..+
T Consensus 44 ~~~~~~~el~-~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 44 DIEELEEELE-KLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp --HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666 666655566666666666666666666666655555544433
No 381
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.14 E-value=27 Score=40.34 Aligned_cols=80 Identities=10% Similarity=0.146 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKV 459 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKe 459 (926)
.++.+...+. .+...+......|..+.++++++.++++++.+...+|.+.|..|.+.-.++-.. ++.+...+..+.+.
T Consensus 356 eL~~Le~~~~-~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k-L~~~~~~L~~ikr~ 433 (569)
T PRK04778 356 QLESLEKQYD-EITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK-LERYRNKLHEIKRY 433 (569)
T ss_pred HHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444444 333333222333899999999999999999999999999999988776665544 66777777777666
Q ss_pred hh
Q psy834 460 HL 461 (926)
Q Consensus 460 LV 461 (926)
+-
T Consensus 434 l~ 435 (569)
T PRK04778 434 LE 435 (569)
T ss_pred HH
Confidence 53
No 382
>COG5293 Predicted ATPase [General function prediction only]
Probab=70.13 E-value=25 Score=41.21 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWIL 427 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSI 427 (926)
..++++|.-+.+.+-.+..++.+++..++.+
T Consensus 375 ~g~~e~y~~l~ee~~~~~~elae~~~rie~l 405 (591)
T COG5293 375 RGVFEKYQTLCEEIIALRGELAELEYRIEPL 405 (591)
T ss_pred CCcHHHHHHHHHHHHHHhhhHHHHHHhhhHH
Confidence 4678888888888777777777776655444
No 383
>PRK14163 heat shock protein GrpE; Provisional
Probab=69.94 E-value=49 Score=35.04 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=54.6
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTRR-QKFENMYDFVNDNIDA 455 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEKr-EAFmkTFKQVNenFsE 455 (926)
..++.++.++. .++..++++..+|+.+.++...-..+..+ +.+-..+|...|+.|++-.. ..|...|+-|-+.|..
T Consensus 47 ~~l~~l~~e~~-el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~l~~Gv~mi~k~l~~ 125 (214)
T PRK14163 47 AQLDQVRTALG-ERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHGELVGGFKSVAESLET 125 (214)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhchhHHHHHHHHHHHHHH
Confidence 35667777777 77777789999999998877665444333 22334444455555544432 2577888888888888
Q ss_pred HHHHh
Q psy834 456 TYKVH 460 (926)
Q Consensus 456 IFKeL 460 (926)
+|+++
T Consensus 126 ~L~k~ 130 (214)
T PRK14163 126 TVAKL 130 (214)
T ss_pred HHHHC
Confidence 88886
No 384
>PRK14151 heat shock protein GrpE; Provisional
Probab=69.70 E-value=86 Score=32.07 Aligned_cols=81 Identities=12% Similarity=-0.031 Sum_probs=52.5
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR---------RQKFENMYD 447 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK---------rEAFmkTFK 447 (926)
..+++++.++. .++..++++..+|+.+.++.+.-..+..+ +..-..+|...++.|++-. .+.|...|+
T Consensus 27 ~~i~~le~e~~-el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~ 105 (176)
T PRK14151 27 ARVQELEEQLA-AAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPMREGVE 105 (176)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHH
Confidence 35667777887 88888889999999997776654433322 2233444445555554432 245777777
Q ss_pred HHHHHHHHHHHHh
Q psy834 448 FVNDNIDATYKVH 460 (926)
Q Consensus 448 QVNenFsEIFKeL 460 (926)
-|-+.|..+|+++
T Consensus 106 mi~k~l~~~L~k~ 118 (176)
T PRK14151 106 LTLKMFQDTLKRY 118 (176)
T ss_pred HHHHHHHHHHHHC
Confidence 7777888887775
No 385
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=69.64 E-value=68 Score=33.02 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 402 RLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQK 441 (926)
Q Consensus 402 QYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEA 441 (926)
.+..+..++..+..++.+|+-+.+.+...|..|.++|++.
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777777777777777777777777777654
No 386
>PRK14154 heat shock protein GrpE; Provisional
Probab=68.70 E-value=66 Score=33.94 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=52.0
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR---------RQKFENMYDF 448 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK---------rEAFmkTFKQ 448 (926)
.++.+++++. .++..++++..+|+.+.++...-..+..+ ...-...|...++.|++-. .+.|...++-
T Consensus 60 el~~le~e~~-elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvem 138 (208)
T PRK14154 60 QLTRMERKVD-EYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSL 138 (208)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHH
Confidence 5666777777 77777789999999988776655444332 2233344444445444432 2457777777
Q ss_pred HHHHHHHHHHHh
Q psy834 449 VNDNIDATYKVH 460 (926)
Q Consensus 449 VNenFsEIFKeL 460 (926)
|-+.|..+|+++
T Consensus 139 i~k~l~~vL~k~ 150 (208)
T PRK14154 139 TLDLLHNTLAKH 150 (208)
T ss_pred HHHHHHHHHHHC
Confidence 888888888775
No 387
>PRK14147 heat shock protein GrpE; Provisional
Probab=68.50 E-value=69 Score=32.56 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=52.8
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTRR------QKFENMYDFVN 450 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEKr------EAFmkTFKQVN 450 (926)
..++.++.++. .++..++++..+|+.+..+...-..+..+ ..+-...|...++.|++-.. +.|...++-|-
T Consensus 25 ~~l~~l~~e~~-elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv~mi~ 103 (172)
T PRK14147 25 AEVESLRSEIA-LVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGTEPSPLRDGLELTY 103 (172)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccchHHHHHHHHHHHH
Confidence 45677888888 88888889999999998776654433322 22333444444444444321 34667777777
Q ss_pred HHHHHHHHHh
Q psy834 451 DNIDATYKVH 460 (926)
Q Consensus 451 enFsEIFKeL 460 (926)
+.|..+|+++
T Consensus 104 k~l~~~L~~~ 113 (172)
T PRK14147 104 KQLLKVAADN 113 (172)
T ss_pred HHHHHHHHHC
Confidence 8888888775
No 388
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.99 E-value=9.2 Score=41.69 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDN 452 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNen 452 (926)
.+..+..+|. +...+++....++.++.+++..+..++++..+.+..+...|.++++.+.+.=-.++..|+.-
T Consensus 205 eL~~lk~~l~-~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~L 276 (312)
T smart00787 205 ELDRAKEKLK-KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKL 276 (312)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5566777777 77777777777888899999999999999999999999999998887665555555555543
No 389
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=67.83 E-value=3.9 Score=43.75 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=21.6
Q ss_pred ccccccCchhHHHHHHHHHHHHHhcccc
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
.....|||||+|+.||||=-+|. +|
T Consensus 125 ~~~P~qLSGGMrQRVaiARAL~~---~P 149 (248)
T COG1116 125 DKYPHQLSGGMRQRVAIARALAT---RP 149 (248)
T ss_pred hcCccccChHHHHHHHHHHHHhc---CC
Confidence 45678999999999999988887 67
No 390
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=67.14 E-value=4.8 Score=42.39 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=51.8
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
..+..+||-|||-+||||=+.. .| +|+..+ ||.-+++
T Consensus 125 dlp~~~LSAGQqRRvAlArL~l----s~-----~pLWiL----------DEP~taL------------------------ 161 (209)
T COG4133 125 DLPVGQLSAGQQRRVALARLWL----SP-----APLWIL----------DEPFTAL------------------------ 161 (209)
T ss_pred ccchhhcchhHHHHHHHHHHHc----CC-----CCceee----------cCccccc------------------------
Confidence 3456799999999999997654 57 899999 9999999
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhh
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTT 649 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t 649 (926)
|.+ ++.+| -+++.+=+....-=...||.|.-
T Consensus 162 Dk~--g~a~l-------~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 162 DKE--GVALL-------TALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred CHH--HHHHH-------HHHHHHHhcCCCEEEEecCCccC
Confidence 888 99999 66777666666522222777653
No 391
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=66.89 E-value=71 Score=38.81 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=15.9
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecCh
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP 647 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~ 647 (926)
++|-.-|++| |++.....-...+|-|-.
T Consensus 715 eeA~~~l~~f----------l~~a~~~g~~~v~IIHGk 742 (782)
T PRK00409 715 EEALERLDKY----------LDDALLAGYGEVLIIHGK 742 (782)
T ss_pred HHHHHHHHHH----------HHHHHHcCCCEEEEEcCC
Confidence 5666666777 555444445556665543
No 392
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.25 E-value=75 Score=35.06 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYK 458 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFK 458 (926)
++..+...|. .++..-+||+-.+.++...+..|.-+.+-|+.....+.+.+..++++-++..-. |+.....|..+..
T Consensus 78 s~r~lk~~l~-evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~e-lEr~K~~~d~L~~ 154 (302)
T PF09738_consen 78 SLRDLKDSLA-EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRE-LERQKRAHDSLRE 154 (302)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5567777887 888888899999999988888888888888888888888888887776444332 3444444444443
No 393
>PLN03140 ABC transporter G family member; Provisional
Probab=66.08 E-value=4.7 Score=51.45 Aligned_cols=74 Identities=11% Similarity=0.024 Sum_probs=50.6
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
..||||||.+++||..++. +| +|..+ ||--.=| |..
T Consensus 1018 ~~LSgGerkRvsIa~aL~~---~P------~lL~L----------DEPTsgL------------------------D~~- 1053 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVA---NP------SIIFM----------DEPTSGL------------------------DAR- 1053 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCCCCC------------------------CHH-
Confidence 5799999999999998886 77 77777 5533333 222
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhh--HHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTT--RSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t--~sr~~~~~~v 659 (926)
+...+ .+.|.+++....|=..++|.|-. ....|+++-+
T Consensus 1054 -~a~~v-------~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1054 -AAAIV-------MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred -HHHHH-------HHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 23333 66788887766665555999853 5677877644
No 394
>PRK09039 hypothetical protein; Validated
Probab=65.76 E-value=80 Score=34.81 Aligned_cols=65 Identities=20% Similarity=0.104 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
.+.-.|.+.+++++..|...++++++.....+..|+.|+.+=..++..--..+..+-.++|..|.
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45555667777777777888888888888888888888777777776666777888888888873
No 395
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=65.73 E-value=20 Score=44.32 Aligned_cols=78 Identities=26% Similarity=0.141 Sum_probs=63.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
...-|||||-+...||--+.--..-- +|++ ||=+.=| |-|
T Consensus 478 ~a~TLSGGEaQRIRLAtqiGS~LtGV-------lYVL----------DEPSIGL-----Hqr------------------ 517 (935)
T COG0178 478 SAGTLSGGEAQRIRLATQIGSGLTGV-------LYVL----------DEPSIGL-----HQR------------------ 517 (935)
T ss_pred cCCCcChhHHHHHHHHHHhcccceee-------EEEe----------cCCccCC-----Chh------------------
Confidence 44589999999999999888777766 8999 8866666 322
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
..+|. -+.|..|-.-.||=.+|-|.+-||...|.+..|
T Consensus 518 ---Dn~rL-------i~tL~~LRDlGNTviVVEHDedti~~AD~iIDi 555 (935)
T COG0178 518 ---DNERL-------IETLKRLRDLGNTVIVVEHDEDTIRAADHIIDI 555 (935)
T ss_pred ---hHHHH-------HHHHHHHHhcCCeEEEEecCHHHHhhcCEEEee
Confidence 23566 678899999999999999999999999998655
No 396
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=65.73 E-value=62 Score=36.29 Aligned_cols=61 Identities=10% Similarity=0.192 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQL-------NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQK 441 (926)
Q Consensus 380 dleeL~~eL~~KLk~vn-------kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEA 441 (926)
.++++..+-+ .++.++ ..+.+++.++.++|........++..+...|.+.++.++++..++
T Consensus 253 ~lekI~sREk-~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 253 TLEKIESREK-YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445444444 555555 445555555566666666666666666777777777777777765
No 397
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=65.70 E-value=1.5 Score=46.71 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=20.5
Q ss_pred cccccccCchhHHHHHHHHHHHHH
Q psy834 529 SYVGIQHLSGGERTLAALAMIFTI 552 (926)
Q Consensus 529 r~QsIQQLSGGEKSLVALALIFAI 552 (926)
+.+.+.+|||||++++=+|++||=
T Consensus 129 ~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 129 SDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HHHhHHhcccchhhhhhhheeeec
Confidence 346678999999999999999873
No 398
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=65.65 E-value=3.3 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=17.9
Q ss_pred cccccCchhHHHHHHHHHHHHH
Q psy834 531 VGIQHLSGGERTLAALAMIFTI 552 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAI 552 (926)
+...+|||||++.||||=-+.-
T Consensus 129 r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 129 RKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred cCcccCChhhHHHHHHHHHHhc
Confidence 3568999999999999875554
No 399
>PRK14140 heat shock protein GrpE; Provisional
Probab=65.09 E-value=97 Score=32.26 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=51.7
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR--------RQKFENMYDF 448 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK--------rEAFmkTFKQ 448 (926)
..++++..++. .++..++++..+|+.+..+...=..+..+ ..+-..+|...++.|++-. ...|...|+-
T Consensus 44 ~~i~~l~~ei~-elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~m 122 (191)
T PRK14140 44 AKIAELEAKLD-ELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEADDEQTKSLLKGVEM 122 (191)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Confidence 35566777777 77777788999999988776654433322 2233344444455554433 2456777777
Q ss_pred HHHHHHHHHHHh
Q psy834 449 VNDNIDATYKVH 460 (926)
Q Consensus 449 VNenFsEIFKeL 460 (926)
|-+.|..+|+++
T Consensus 123 i~k~l~~~L~k~ 134 (191)
T PRK14140 123 VHRQLLEALKKE 134 (191)
T ss_pred HHHHHHHHHHHC
Confidence 888888888875
No 400
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.08 E-value=66 Score=37.67 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=4.4
Q ss_pred CCChhhhc
Q psy834 627 QNPLPEVS 634 (926)
Q Consensus 627 ~~~l~e~~ 634 (926)
++.+|.++
T Consensus 597 ~~~~~~~~ 604 (650)
T TIGR03185 597 VNYFPKAS 604 (650)
T ss_pred HHHhhccC
Confidence 44566653
No 401
>PRK14141 heat shock protein GrpE; Provisional
Probab=64.73 E-value=90 Score=32.94 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=52.5
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------------HHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR--------------RQKF 442 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK--------------rEAF 442 (926)
+.++.++.++. .++..++++..+|+.+..+...-..+..+ +..-...|...++.|++-. ...|
T Consensus 38 ~~i~~le~e~~-elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l 116 (209)
T PRK14141 38 DPLEALKAENA-ELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKAL 116 (209)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccchhHHHH
Confidence 46677888888 88888899999999998776654433322 2233344444444444422 2457
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy834 443 ENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 443 mkTFKQVNenFsEIFKeL 460 (926)
...|+-|-+.|..+|+++
T Consensus 117 ~eGv~mi~k~l~~vLek~ 134 (209)
T PRK14141 117 IEGVEMTERAMLNALERH 134 (209)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 777777777888888775
No 402
>PRK14157 heat shock protein GrpE; Provisional
Probab=64.16 E-value=67 Score=34.40 Aligned_cols=80 Identities=13% Similarity=0.258 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTRR-QKFENMYDFVNDNIDAT 456 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEKr-EAFmkTFKQVNenFsEI 456 (926)
.++.++.++. .++..++++..+|+.++++.+.-..+..+ +.+-...|...++.|++-.. ..+...|+.|.+.|..+
T Consensus 85 ~l~~le~e~~-e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~~~~~~~~~i~k~l~~v 163 (227)
T PRK14157 85 PLGQAKKEAA-EYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHSEMDDSFKAVAAKIDKA 163 (227)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccccchHHHHHHHHHHHH
Confidence 5677888888 88888899999999998877665444333 22223333333334433321 12334577788888888
Q ss_pred HHHh
Q psy834 457 YKVH 460 (926)
Q Consensus 457 FKeL 460 (926)
|+++
T Consensus 164 L~k~ 167 (227)
T PRK14157 164 FEKF 167 (227)
T ss_pred HHHC
Confidence 8875
No 403
>PRK14159 heat shock protein GrpE; Provisional
Probab=64.00 E-value=1.1e+02 Score=31.46 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=54.0
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLK--ALYKRRWILQKKFDKVKHTR--------RQKFENMYDF 448 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrE--ELdKekeSIrELIEeLDKEK--------rEAFmkTFKQ 448 (926)
..++.++.++. .++..++++..+|+.+..+...-..+.. .+.+-+..|...++.|++-. ...|...++-
T Consensus 30 ~~i~~l~~e~~-elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~m 108 (176)
T PRK14159 30 VEQNKLQKDYD-ELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHDEISLKIKEGVQN 108 (176)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHH
Confidence 35677888888 8888889999999999877665443333 23333444444444444432 2457778888
Q ss_pred HHHHHHHHHHHh
Q psy834 449 VNDNIDATYKVH 460 (926)
Q Consensus 449 VNenFsEIFKeL 460 (926)
|-+.|..+|.++
T Consensus 109 i~k~l~~vL~k~ 120 (176)
T PRK14159 109 TLDLFLKKLEKH 120 (176)
T ss_pred HHHHHHHHHHHC
Confidence 888888888875
No 404
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.91 E-value=1e+02 Score=33.71 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=32.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYD 447 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFK 447 (926)
.+..++.+...+-+++.+++++|+.+.+++.+++.+++...+.|+++.. .+.+-+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~-~~~~~~n 102 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE-EYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4445555555555566666666666666666666666666666654444 4443333
No 405
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.77 E-value=1.2e+02 Score=29.67 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 399 EQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY 457 (926)
Q Consensus 399 AIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF 457 (926)
..++++++.++..++..+++++++......+. .+-.+++-+.|...|+...+.|.+++
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKEDLQELREL-LKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555554444444444422 22223444455555555555555555
No 406
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=63.09 E-value=6.2 Score=41.56 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=49.8
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||+.+||+=-+ .+-| -|..| ||.-+-|
T Consensus 128 ~k~it~lSGGE~QriAliR~L---q~~P------~ILLL----------DE~TsAL------------------------ 164 (223)
T COG4619 128 TKNITELSGGEKQRIALIRNL---QFMP------KILLL----------DEITSAL------------------------ 164 (223)
T ss_pred cchhhhccchHHHHHHHHHHh---hcCC------ceEEe----------cCchhhc------------------------
Confidence 357899999999999876432 3455 45666 8887777
Q ss_pred CCCCC-chhhhhhcccCCCCChhhhccCCCceeE--eecChhh-HHhhhhhcceee
Q psy834 610 SRANP-NLSRRAQANNSAQNPLPEVSSSPNTRSR--VQSSPTT-RSRVQSSLTIQS 661 (926)
Q Consensus 610 ~~a~~-N~~R~~~~~~~~~~~l~e~~~~~~tr~~--v~~~~~t-~sr~~~~~~v~~ 661 (926)
|.+|. |++ +++-...+ ++-+-+ |||.+-- |.-.|+..+|+-
T Consensus 165 D~~nkr~ie----------~mi~~~v~-~q~vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 165 DESNKRNIE----------EMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred ChhhHHHHH----------HHHHHHhh-hhceEEEEEecChHHHhhhhheEEEecc
Confidence 44421 332 22333333 233333 3999987 888888888864
No 407
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=62.94 E-value=1.2e+02 Score=31.13 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=54.8
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY 457 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF 457 (926)
++++++..++. +....+.++-++|......+..+... -..+...+-+.|..|+..|-..|...+-....++..++
T Consensus 150 ke~eK~~~k~~-k~~~~~~~~~~~Y~~~v~~~~~~~~~---~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~c 224 (236)
T cd07651 150 KELEKNNAKLN-KAQSSINSSRRDYQNAVKALRELNEI---WNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLC 224 (236)
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777 77766677778888887777777553 55677888888999999888887776666666655443
No 408
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=62.72 E-value=3.5 Score=44.44 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.8
Q ss_pred CCcccccccCchhHHHHHHHHHHHH
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFT 551 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFA 551 (926)
.+.+++-..|||||++.||+|=.++
T Consensus 139 ~~A~qra~~LSGGQQQRVaIARaL~ 163 (258)
T COG3638 139 DKAYQRASTLSGGQQQRVAIARALV 163 (258)
T ss_pred HHHHHHhccCCcchhHHHHHHHHHh
Confidence 4568899999999999999998765
No 409
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=62.64 E-value=4.2 Score=47.50 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhcccc
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
+...+||||||+.+|+|.-+|. +|
T Consensus 425 ryP~elSGGQrQRvaIARALa~---~P 448 (539)
T COG1123 425 RYPHELSGGQRQRVAIARALAL---EP 448 (539)
T ss_pred cCchhcCcchhHHHHHHHHHhc---CC
Confidence 4567999999999999999998 77
No 410
>PRK14162 heat shock protein GrpE; Provisional
Probab=62.48 E-value=1.4e+02 Score=31.20 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=49.1
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR--------RQKFENMYDFV 449 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK--------rEAFmkTFKQV 449 (926)
.++.+..++. .++..++++..+|+.+..+...-..+..+ +..-...|...++.|++-. ...|...|+-|
T Consensus 47 ~l~~l~~e~~-elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi 125 (194)
T PRK14162 47 EIADLKAKNK-DLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMT 125 (194)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHH
Confidence 3455555665 66666678888888887766554333222 2333444444555554432 25677888888
Q ss_pred HHHHHHHHHHh
Q psy834 450 NDNIDATYKVH 460 (926)
Q Consensus 450 NenFsEIFKeL 460 (926)
-+.|..+|.++
T Consensus 126 ~k~l~~vL~~~ 136 (194)
T PRK14162 126 LDHLVKALKDH 136 (194)
T ss_pred HHHHHHHHHHC
Confidence 88888888875
No 411
>PRK14158 heat shock protein GrpE; Provisional
Probab=62.25 E-value=1.1e+02 Score=32.02 Aligned_cols=79 Identities=9% Similarity=-0.027 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR-------RQKFENMYDFVND 451 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK-------rEAFmkTFKQVNe 451 (926)
+..++.++. .++..++++..+|+.+..+.+.-..+... +..-...|...++.|++-. .+.|...|+-|.+
T Consensus 49 l~~le~e~~-el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k 127 (194)
T PRK14158 49 LAAKEAEAA-ANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLS 127 (194)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 344555555 56666678888888887766554433322 2223334444444444432 2567788888888
Q ss_pred HHHHHHHHh
Q psy834 452 NIDATYKVH 460 (926)
Q Consensus 452 nFsEIFKeL 460 (926)
.|..+|.++
T Consensus 128 ~l~~vLek~ 136 (194)
T PRK14158 128 MLLSTLKKF 136 (194)
T ss_pred HHHHHHHHC
Confidence 888888875
No 412
>KOG0058|consensus
Probab=61.93 E-value=3.9 Score=49.09 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=25.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
+-.|||||||+..|||=- +. -+| .|-.| ||--.-|
T Consensus 601 kG~qLSGGQKQRIAIARA--Ll-r~P------~VLIL----------DEATSAL 635 (716)
T KOG0058|consen 601 KGSQLSGGQKQRIAIARA--LL-RNP------RVLIL----------DEATSAL 635 (716)
T ss_pred ccccccchHHHHHHHHHH--Hh-cCC------CEEEE----------echhhhc
Confidence 445999999999999853 32 277 56677 7766666
No 413
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=61.72 E-value=6.2 Score=52.53 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=25.5
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
.+.+..||||||.+++||..|+. +| ++..+
T Consensus 1056 ~~~~~~LSGGqKQRLsLArALi~---~P------kVLLL 1085 (2272)
T TIGR01257 1056 NEEAQDLSGGMQRKLSVAIAFVG---DA------KVVVL 1085 (2272)
T ss_pred cCChhhCCHHHHHHHHHHHHHHc---CC------CEEEE
Confidence 34578999999999999999987 66 78888
No 414
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.59 E-value=47 Score=36.21 Aligned_cols=12 Identities=8% Similarity=-0.166 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy834 448 FVNDNIDATYKV 459 (926)
Q Consensus 448 QVNenFsEIFKe 459 (926)
.+.+.|.++|..
T Consensus 195 ~L~~r~~ELe~~ 206 (290)
T COG4026 195 DLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHhccc
Confidence 344555555544
No 415
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.57 E-value=62 Score=31.06 Aligned_cols=29 Identities=3% Similarity=-0.020 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 431 FDKVKHTRRQKFENMYDFVNDNIDATYKV 459 (926)
Q Consensus 431 IEeLDKEKrEAFmkTFKQVNenFsEIFKe 459 (926)
+...++.|...|..+|.......-..+++
T Consensus 179 l~~f~~~~~~dlk~~l~~~~~~qi~~~~~ 207 (218)
T cd07596 179 LKRFHEERARDLKAALKEFARLQVQYAEK 207 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555554444444444444
No 416
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=61.19 E-value=4.6 Score=43.48 Aligned_cols=72 Identities=19% Similarity=0.087 Sum_probs=49.2
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+...+|||||++.+|||=-++. +| .|..+ ||.-.-|
T Consensus 136 ~R~P~eLSGGQ~QRiaIARAL~~---~P------klLIl----------DEptSaL------------------------ 172 (252)
T COG1124 136 DRRPHELSGGQRQRIAIARALIP---EP------KLLIL----------DEPTSAL------------------------ 172 (252)
T ss_pred hcCchhcChhHHHHHHHHHHhcc---CC------CEEEe----------cCchhhh------------------------
Confidence 35678899999999999977665 66 45556 5533333
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhh
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRV 653 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~ 653 (926)
+=.-||- .-|+|-++...-+.-|++ +|+--....|
T Consensus 173 -------D~siQa~--IlnlL~~l~~~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 173 -------DVSVQAQ--ILNLLLELKKERGLTYLFISHDLALVEHM 208 (252)
T ss_pred -------cHHHHHH--HHHHHHHHHHhcCceEEEEeCcHHHHHHH
Confidence 2233332 368899999888877888 8876555554
No 417
>PRK14161 heat shock protein GrpE; Provisional
Probab=60.97 E-value=1.6e+02 Score=30.29 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTRR----------QKFENMYD 447 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEKr----------EAFmkTFK 447 (926)
.++.++.++. .++..++++..+|+.+..+...-..+..+ ...-..+|...++.|++-.. +.|...|+
T Consensus 27 ei~~l~~e~~-elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~ 105 (178)
T PRK14161 27 EITALKAEIE-ELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQ 105 (178)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHH
Confidence 4566777777 77777788999999988776654433222 22333444444444444221 46778888
Q ss_pred HHHHHHHHHHHHh
Q psy834 448 FVNDNIDATYKVH 460 (926)
Q Consensus 448 QVNenFsEIFKeL 460 (926)
-|-+.|..+|+++
T Consensus 106 mi~k~l~~vL~~~ 118 (178)
T PRK14161 106 MTKDELDKVFHKH 118 (178)
T ss_pred HHHHHHHHHHHHC
Confidence 8888888888875
No 418
>KOG0057|consensus
Probab=60.80 E-value=9.1 Score=45.26 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=53.9
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
.....||||||+.+|||=-| .|- +||..+ ||.-.-+
T Consensus 483 erG~~LSGGekQrvslaRa~----lKd-----a~Il~~----------DEaTS~L------------------------- 518 (591)
T KOG0057|consen 483 ERGLMLSGGEKQRVSLARAF----LKD-----APILLL----------DEATSAL------------------------- 518 (591)
T ss_pred hcccccccchHHHHHHHHHH----hcC-----CCeEEe----------cCccccc-------------------------
Confidence 35678999999999987544 255 689999 7654444
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCC
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGS 666 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~ 666 (926)
|+ .-+|- -..+.++-|+ ..|=-.|-|+=.|-...|..+.+ ++.|+|.
T Consensus 519 D~--~TE~~-----i~~~i~~~~~--~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 519 DS--ETERE-----ILDMIMDVMS--GRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred ch--hhHHH-----HHHHHHHhcC--CCeEEEEEecchhHhcCCEEEEEECCeeEEecc
Confidence 33 33433 0112333233 35556669999999999999877 4555554
No 419
>KOG0062|consensus
Probab=60.71 E-value=4.2 Score=47.77 Aligned_cols=30 Identities=27% Similarity=0.160 Sum_probs=22.7
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
.+.|..||||||+.||+|-+ -.-+| =|.+|
T Consensus 477 ~~si~~LSGGQKsrvafA~~---~~~~P------hlLVL 506 (582)
T KOG0062|consen 477 LQSIASLSGGQKSRVAFAAC---TWNNP------HLLVL 506 (582)
T ss_pred hccccccCCcchhHHHHHHH---hcCCC------cEEEe
Confidence 35688999999999999854 34467 46777
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.66 E-value=93 Score=37.87 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 406 LLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVN 450 (926)
Q Consensus 406 feEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVN 450 (926)
++++.+++.+.++++++.+..+++..++|+++|++.+.++-++.+
T Consensus 527 ~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~ 571 (771)
T TIGR01069 527 LEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQ 571 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555544444433
No 421
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=60.61 E-value=5.4 Score=53.08 Aligned_cols=75 Identities=12% Similarity=-0.007 Sum_probs=49.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||.+++||..++. +| +|..+ ||-.+=+ |
T Consensus 2066 k~~~~LSGGqKqRLslA~ALi~---~P------~VLLL----------DEPTsGL------------------------D 2102 (2272)
T TIGR01257 2066 RLAGTYSGGNKRKLSTAIALIG---CP------PLVLL----------DEPTTGM------------------------D 2102 (2272)
T ss_pred CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------C
Confidence 4578999999999999998877 67 88888 7754444 2
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
-. +-..+ .+.|.++.....|=.+++|+.--..+ +|+.+
T Consensus 2103 p~--sr~~l-------~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~ 2141 (2272)
T TIGR01257 2103 PQ--ARRML-------WNTIVSIIREGRAVVLTSHSMEECEALCTRLA 2141 (2272)
T ss_pred HH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 22 23333 56777876654454455888654444 45543
No 422
>PRK14148 heat shock protein GrpE; Provisional
Probab=59.65 E-value=1.7e+02 Score=30.70 Aligned_cols=80 Identities=9% Similarity=0.068 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR--------RQKFENMYDFV 449 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK--------rEAFmkTFKQV 449 (926)
.++.++.+++ .++..++++..+|+.+.++...-..+... ...-...|...++.|++-. ...|...|+-|
T Consensus 48 ~l~~l~~e~~-elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi 126 (195)
T PRK14148 48 TIKELEDSCD-QFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELT 126 (195)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHH
Confidence 3455555565 66666678888888887766544333322 2233334444444444332 13577788888
Q ss_pred HHHHHHHHHHh
Q psy834 450 NDNIDATYKVH 460 (926)
Q Consensus 450 NenFsEIFKeL 460 (926)
-+.|..+|.++
T Consensus 127 ~k~l~~vL~k~ 137 (195)
T PRK14148 127 AKMLVDILKKN 137 (195)
T ss_pred HHHHHHHHHHC
Confidence 88888888875
No 423
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=59.47 E-value=6.5 Score=43.41 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=55.7
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||++++|.+|+.+|. +| .|-.- ||--.-|
T Consensus 151 PhelSGGMrQRV~IAmala~---~P------~LlIA----------DEPTTAL--------------------------- 184 (316)
T COG0444 151 PHELSGGMRQRVMIAMALAL---NP------KLLIA----------DEPTTAL--------------------------- 184 (316)
T ss_pred CcccCCcHHHHHHHHHHHhC---CC------CEEEe----------CCCcchh---------------------------
Confidence 36999999999999999886 78 34444 5532222
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhh----hcceeeecCCCCC
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQS----SLTIQSAEQGSPN 668 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~----~~~v~~aE~G~~~ 668 (926)
+=-.||. .-++|.++....++-.++ ||+--..+.+-. .+.=...|.|-.+
T Consensus 185 ----Dvt~Qaq--Il~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 185 ----DVTVQAQ--ILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred ----hHHHHHH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence 2222222 257899999877777766 999877766543 3344566776543
No 424
>KOG0979|consensus
Probab=58.84 E-value=68 Score=40.58 Aligned_cols=64 Identities=9% Similarity=0.176 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHh
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENM------YDFVNDNIDATYKVH 460 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkT------FKQVNenFsEIFKeL 460 (926)
++--++|+++.+.++.+.+++.+|.+++..|.+.++.|+.++.+.+.+| |+....+..++|.+|
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~ 313 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKL 313 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888899999999999999999999888877665 555556666666654
No 425
>PRK14149 heat shock protein GrpE; Provisional
Probab=58.76 E-value=1.7e+02 Score=30.57 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR--------RQKFENMYDFV 449 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK--------rEAFmkTFKQV 449 (926)
.++.+..++. .++..++++..+|+.+..+...-..+..+ ...-+..|...++.|++-. ...|...|+-|
T Consensus 44 ~~~~l~~e~~-elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi 122 (191)
T PRK14149 44 IKEDFELKYK-EMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEVDKESALTKGLELT 122 (191)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHH
Confidence 5677788888 88888899999999998876654433332 2333444444455554432 24577788888
Q ss_pred HHHHHHHHHHh
Q psy834 450 NDNIDATYKVH 460 (926)
Q Consensus 450 NenFsEIFKeL 460 (926)
-+.|..+|+++
T Consensus 123 ~k~l~~vL~k~ 133 (191)
T PRK14149 123 MEKLHEVLARH 133 (191)
T ss_pred HHHHHHHHHHC
Confidence 88888888875
No 426
>KOG1962|consensus
Probab=58.64 E-value=30 Score=36.77 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.1
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFD 432 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIE 432 (926)
++++++.+++ +....+.+|..++..+.+|.+.+..+++.|.++..++++.|+
T Consensus 159 ~~~kL~~el~-~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 159 DLEKLETELE-KKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 5666666666 666666777777777777777777777777777777766654
No 427
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=58.51 E-value=98 Score=33.88 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 402 RLAPLLDRLRRYEADLKALYKRRWILQKKFDKV 434 (926)
Q Consensus 402 QYEEfeEQyEELeaRrEELdKekeSIrELIEeL 434 (926)
+|..+.+.|+++..+++++.+++..+.+-++.|
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleel 161 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEEL 161 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 428
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=58.12 E-value=74 Score=36.00 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=89.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhh
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYL 470 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L 470 (926)
.+++.-..++.+|+.+.+|+..+.++.+.=....+.+.+.+.++-.+-..+=.++.+.++..|..++..+.+.. .
T Consensus 142 ~~~p~y~~~~~~Y~k~lkqRN~~Lk~~~~d~~~L~~~d~qLa~~g~~i~~~R~~~l~~L~~~~~~~~~~~~~~~-----~ 216 (363)
T COG1195 142 QIEPVYLEALSNYEKLLKQRNALLKQLQGDYAWLDVWDQQLAELGAEIAAARAEYLNALAPLAEKIHQLFLPEL-----E 216 (363)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch-----h
Confidence 44555578888999999998888877521123344445555555544444444556666666666666654211 1
Q ss_pred hhc-----CCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHH
Q psy834 471 IVS-----GWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAA 545 (926)
Q Consensus 471 ~lS-----gwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVA 545 (926)
.++ +|-.+..++.---...|. .+-..++.+.-.-.-|.-.-+.|.+. ++.. -..+|=||+-.++
T Consensus 217 ~l~~~y~~~~~~~~~~~~~~~~~~L~-------~~r~rD~~~G~Tl~GPHRdDl~~~~~--~~~~--~~~~S~Gqqk~l~ 285 (363)
T COG1195 217 SLSIFYRGSVDVTAWEIEEDYLEALA-------KRRERDLARGYTLVGPHRDDLLFRLN--GKPA--ADFASQGQQKTLA 285 (363)
T ss_pred hhheeeeccccccHhHHHHHHHHHHH-------HHHHHHHHcCCcCcCCCchheEEEEC--Ccch--hhhcCcchHHHHH
Confidence 111 111110110000000010 00000000000012333333444443 3333 4589999999999
Q ss_pred HHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 546 LAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 546 LALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
|||.+|=...--.+..-.||.-+ |+|-+=|
T Consensus 286 laLrLAe~~l~~~~~g~~PILLL----------DDv~seL 315 (363)
T COG1195 286 LALRLAEIELLREETGEYPILLL----------DDVASEL 315 (363)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEe----------chhhHhh
Confidence 99999965554445556899999 9999988
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.72 E-value=1.3e+02 Score=36.69 Aligned_cols=17 Identities=6% Similarity=-0.078 Sum_probs=8.0
Q ss_pred hhhhccCCCceeEeecC
Q psy834 630 LPEVSSSPNTRSRVQSS 646 (926)
Q Consensus 630 l~e~~~~~~tr~~v~~~ 646 (926)
|++--...-...+|-|-
T Consensus 714 ld~a~~~g~~~v~IIHG 730 (771)
T TIGR01069 714 LNDALLAGYEVVLIIHG 730 (771)
T ss_pred HHHHHHCCCCEEEEEcC
Confidence 44444444444555554
No 430
>KOG0055|consensus
Probab=57.52 E-value=8.9 Score=48.58 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=54.4
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
|||||||+++|||=-+.- +| .|-.| ||.-.-| |-.
T Consensus 489 qLSGGQKQRIAIARalv~---~P------~ILLL----------DEaTSaL------------------------D~~-- 523 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVR---NP------KILLL----------DEATSAL------------------------DAE-- 523 (1228)
T ss_pred CCChHHHHHHHHHHHHHh---CC------CEEEe----------cCccccc------------------------CHH--
Confidence 599999999999865543 57 67777 7766666 221
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee---eecCCCCC
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ---SAEQGSPN 668 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~---~aE~G~~~ 668 (926)
-+|. .|..|+..+. ..|--+|+|.=-|-..+|...-+. ..|+|.+.
T Consensus 524 -se~~------Vq~ALd~~~~-grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 524 -SERV------VQEALDKASK-GRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred -HHHH------HHHHHHHhhc-CCeEEEEeeehhhhhccCEEEEEECCEEEEecCHH
Confidence 2222 2455665554 457788899988888898877653 45555543
No 431
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=57.45 E-value=1.4e+02 Score=32.30 Aligned_cols=77 Identities=10% Similarity=0.138 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVND-------- 451 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNe-------- 451 (926)
+++++..++. +......++-++|+...+.++.. ...-.++...+-+.+..++.+|-.-|-.++=.+-.
T Consensus 169 q~eK~~~k~~-k~~~~~~~sk~~Y~~~l~~ln~~---~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~l~~~~~~ 244 (258)
T cd07680 169 QQKKLQDKVD-KCKQDVQKTQEKYEKVLDDVGKT---TPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAESS 244 (258)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccch
Confidence 5666777777 66666677777887777776666 44445677888888999999998888877766544
Q ss_pred HHHHHHHHh
Q psy834 452 NIDATYKVH 460 (926)
Q Consensus 452 nFsEIFKeL 460 (926)
.|..||..|
T Consensus 245 ~~~~~~~~l 253 (258)
T cd07680 245 SYAHVYREL 253 (258)
T ss_pred hHHHHHHHH
Confidence 366777776
No 432
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=57.32 E-value=7.7 Score=39.96 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=30.2
Q ss_pred ccccCchhHHHHHHHHHHHHHh------ccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIW------KLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQ------KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
.+..||+|||.+++||+.+|.- ..+| |+..+ ||..+.+
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~------~illl----------DEp~a~L 223 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEY------PVLLL----------DDVLAEL 223 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCC------cEEEE----------cCcchhc
Confidence 3678999999999999998742 2344 78888 8887777
No 433
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=57.22 E-value=73 Score=32.78 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=49.9
Q ss_pred cChhHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQL-------NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMY 446 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vn-------kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTF 446 (926)
+.++.|...|+ .+++++ .|+..+|.+..+.|++..+++..|......|-.-.+.+..+|.+.+.+..
T Consensus 84 kEv~~vRkkID-~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~i 157 (159)
T PF04949_consen 84 KEVEMVRKKID-SVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEI 157 (159)
T ss_pred HHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555665 555555 78888898888889888888888888888887777888877777665543
No 434
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.58 E-value=1.6e+02 Score=26.79 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 398 KEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHT 437 (926)
Q Consensus 398 KAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKE 437 (926)
-.++++.++.+++..+..+.++|...+..+...|..++..
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 4667777777777777777777777777777777777764
No 435
>PRK09343 prefoldin subunit beta; Provisional
Probab=56.45 E-value=35 Score=32.48 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=10.9
Q ss_pred hhhhhCCCCCCCccc
Q psy834 352 SLDSIGSSPSKQHSV 366 (926)
Q Consensus 352 ~IRkLGsLPeeA~s~ 366 (926)
.+++|..||+++..|
T Consensus 43 ~~~EL~~L~~d~~VY 57 (121)
T PRK09343 43 ALEELEKLPDDTPIY 57 (121)
T ss_pred HHHHHHcCCCcchhH
Confidence 567788899876543
No 436
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=56.17 E-value=6.8 Score=45.33 Aligned_cols=25 Identities=32% Similarity=0.198 Sum_probs=21.0
Q ss_pred ccccccCchhHHHHHHHHHHHHHhcccc
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
.+.|..||||||..||||=+|- ++|
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~---~~p 172 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALL---EEP 172 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHh---cCC
Confidence 5788999999999999996653 477
No 437
>KOG0055|consensus
Probab=56.10 E-value=5.7 Score=50.15 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=57.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.-.|||||||++.|+|= ||-| +| .|-.| ||--.-| |-
T Consensus 1123 rG~QLSGGQKQRIAIAR--AilR-nP------kILLL----------DEATSAL------------------------Ds 1159 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIAR--AILR-NP------KILLL----------DEATSAL------------------------DS 1159 (1228)
T ss_pred ccCcCCchHHHHHHHHH--HHHc-CC------Ceeee----------eccchhh------------------------hh
Confidence 35699999999999984 4443 56 67777 8877777 32
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee---eecCCCC
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ---SAEQGSP 667 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~---~aE~G~~ 667 (926)
. =+|- .|+-|+.+.. ..|--+|.|..-|+.-.|...=+. .+|+|.-
T Consensus 1160 e---SErv------VQeALd~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1160 E---SERV------VQEALDRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTH 1208 (1228)
T ss_pred h---hHHH------HHHHHHHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEecccH
Confidence 2 3555 3455666544 367777799999999888766443 4666653
No 438
>KOG0063|consensus
Probab=55.73 E-value=6.1 Score=46.05 Aligned_cols=37 Identities=30% Similarity=0.174 Sum_probs=33.1
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
-+.++.|||||++.|||||.++ +| |-+|.- ||-+|=+
T Consensus 451 dqevq~lSggelQRval~KOGG----Kp-----AdvYli----------DEpsAyl 487 (592)
T KOG0063|consen 451 DQEVQGLSGGELQRVALALCLG----KP-----ADVYLI----------DEPSAYL 487 (592)
T ss_pred hHHhhcCCchhhHHHHHHHhcC----CC-----CceEEe----------cCchhhc
Confidence 3678899999999999999887 79 999999 9999888
No 439
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=55.32 E-value=2e+02 Score=29.18 Aligned_cols=64 Identities=8% Similarity=0.254 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHH-HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 398 KEQQRLAPLLDRLRR-YE----------ADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 398 KAIEQYEEfeEQyEE-Le----------aRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
++.-+|+....+++. +. .++..++++....++.++.|+.+=++.+=..|+....-|..+|..++
T Consensus 121 ~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~ 195 (216)
T cd07599 121 HKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFY 195 (216)
T ss_pred HHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344457777777777 43 23556677888888899999999999999999999999999998876
No 440
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.28 E-value=1.2e+02 Score=31.44 Aligned_cols=63 Identities=14% Similarity=0.273 Sum_probs=45.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDAT 456 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEI 456 (926)
|+.....||-++|...-+.+..+..++ ......+-+.|..|+.+|-..|-..+.....++..+
T Consensus 154 K~~~K~~ka~~~Y~~~v~~~~~~~~~~---~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~ 216 (261)
T cd07648 154 KAEAKLKKAQDEYKALVEKYNNIRADF---ETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSEN 216 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444578888887777766665554 677888888999999999988888777766665443
No 441
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=55.14 E-value=9.2 Score=44.80 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=54.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
..++||||||+.|.+|.-+|. +| .+... || || .-
T Consensus 151 yPheLSGG~rQRv~iAmALa~---~P------~LLIa----------DE---PT------------------------Ta 184 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALAL---KP------KLLIA----------DE---PT------------------------TA 184 (539)
T ss_pred CCcccCchHHHHHHHHHHHhC---CC------CEEEE----------CC---Cc------------------------cc
Confidence 568999999999999988875 88 45555 55 44 11
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcce----eeecCCC
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTI----QSAEQGS 666 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v----~~aE~G~ 666 (926)
. -+.--+| .-++|.++....++=.++ ||.+-..+.+-.-..| ...|.|-
T Consensus 185 L--Dvt~q~q----IL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 185 L--DVTTQAQ----ILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred c--CHHHHHH----HHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 1 1222222 246788888888888887 9999888776443333 4455553
No 442
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=55.12 E-value=2e+02 Score=29.41 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 428 QKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 428 rELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
+.-+...+.+|...|..++...-+..-+.++++
T Consensus 174 k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ 206 (216)
T cd07627 174 KSELERFERERVEDFRNSVEIYLESAIESQKEL 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666666554
No 443
>PRK14146 heat shock protein GrpE; Provisional
Probab=55.08 E-value=2e+02 Score=30.41 Aligned_cols=80 Identities=6% Similarity=0.065 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADL--KALYKRRWILQKKFDKVKHTR--------RQKFENMYDFV 449 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRr--EELdKekeSIrELIEeLDKEK--------rEAFmkTFKQV 449 (926)
.++.+..++. .++..++++..+|+.+..+...=..+. -.+.+-+..|...++.|++-. ...|...++-|
T Consensus 62 ~l~~l~~e~~-el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi 140 (215)
T PRK14146 62 ELDNAKKEIE-SLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMI 140 (215)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHH
Confidence 4566777777 777777899999999887765543332 223334444444555554332 24577777777
Q ss_pred HHHHHHHHHHh
Q psy834 450 NDNIDATYKVH 460 (926)
Q Consensus 450 NenFsEIFKeL 460 (926)
-+.|..+|+++
T Consensus 141 ~k~l~~~L~k~ 151 (215)
T PRK14146 141 LKEFYSVLEKS 151 (215)
T ss_pred HHHHHHHHHHC
Confidence 78888888775
No 444
>PRK14144 heat shock protein GrpE; Provisional
Probab=54.98 E-value=2e+02 Score=30.29 Aligned_cols=81 Identities=9% Similarity=-0.003 Sum_probs=52.2
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLK--ALYKRRWILQKKFDKVKHTR-------RQKFENMYDFV 449 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrE--ELdKekeSIrELIEeLDKEK-------rEAFmkTFKQV 449 (926)
+.++.+..++. .++..++++..+|+.+..+...-..+.. .+..-...|...++.|++-. ...|...|+-|
T Consensus 52 ~~i~~le~e~~-elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~i~~Gv~mi 130 (199)
T PRK14144 52 EQLTLAEQKAH-ENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADKNSDPSMHEGLELT 130 (199)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHcccccchhHHHHHHHHH
Confidence 35666777777 7777778889999998777655433322 23334444555555554433 24577788888
Q ss_pred HHHHHHHHHHh
Q psy834 450 NDNIDATYKVH 460 (926)
Q Consensus 450 NenFsEIFKeL 460 (926)
-+.|..+|..+
T Consensus 131 ~k~l~~~L~k~ 141 (199)
T PRK14144 131 MKLFLDALQKF 141 (199)
T ss_pred HHHHHHHHHHC
Confidence 88888888875
No 445
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=54.79 E-value=1.5e+02 Score=32.26 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=58.1
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVND------- 451 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNe------- 451 (926)
+.++++..++. +++....+|-+.|+...+.++.+..++. ++....-+.+..++.+|..-|-.+|-.+-.
T Consensus 168 ~q~~K~~~k~~-k~~~~~~k~~~~Y~~~l~~L~~~~~~y~---e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~~~l~i~~~ 243 (258)
T cd07679 168 EQLKKLQDKVE-KCKQDVLKTKEKYEKSLKELDQTTPQYM---ENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNV 243 (258)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence 36677888888 7877778888888887777777666654 566777778888899998888877765543
Q ss_pred -HHHHHHHHh
Q psy834 452 -NIDATYKVH 460 (926)
Q Consensus 452 -nFsEIFKeL 460 (926)
.|..||..|
T Consensus 244 ~~~~~i~~~L 253 (258)
T cd07679 244 ASYKNIYREL 253 (258)
T ss_pred hhHHHHHHHH
Confidence 466677766
No 446
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.22 E-value=2.7e+02 Score=28.91 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRR------QKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKr------EAFmkTFKQVNenFsEIFKeL 460 (926)
.+|.+..+.+.+++..|..++.++..........+..|.++-. .....-|+.|...+..+|..|
T Consensus 165 ~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 165 EKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666666666666666666655555555543322 223344555555555555554
No 447
>PRK14142 heat shock protein GrpE; Provisional
Probab=53.97 E-value=1.2e+02 Score=32.52 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTRRQKF--ENMYDFVNDNIDA 455 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEKrEAF--mkTFKQVNenFsE 455 (926)
++...+.++. .|+..++++..+|+.+.++.+.-..+..+ +.+-+.+|...++.|++-....- ...|+.|.+.|..
T Consensus 41 ~~~~~~~e~~-elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~~~~~v~~I~kqL~~ 119 (223)
T PRK14142 41 DAAHTEDKVA-ELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDLESGPLKSVADKLDS 119 (223)
T ss_pred cchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhccccccHHHHHHHHHHHH
Confidence 6677888888 88888899999999998887655444332 23334444445555554432110 1236667778888
Q ss_pred HHHHh
Q psy834 456 TYKVH 460 (926)
Q Consensus 456 IFKeL 460 (926)
+|+++
T Consensus 120 iLek~ 124 (223)
T PRK14142 120 ALTGL 124 (223)
T ss_pred HHHHC
Confidence 88776
No 448
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=53.53 E-value=1.5e+02 Score=31.29 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=44.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNI 453 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenF 453 (926)
|++....||.+.|....++|+... .+.......+-+.+..++.+|-..|-..+.....++
T Consensus 154 K~~~K~~ka~~~y~~~~~ky~~~~---~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~ 213 (261)
T cd07674 154 KAELKTKKAAESLRGSVEKYNRAR---GDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSV 213 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445578888887777777654 446688888889999999999988887777665543
No 449
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=53.11 E-value=1.2e+02 Score=31.88 Aligned_cols=71 Identities=11% Similarity=0.195 Sum_probs=55.7
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNI 453 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenF 453 (926)
++++++..++. +......++-++|......+..+.. ........+-+.+..++.+|-.-|...+..+..++
T Consensus 168 ~eleK~~~k~~-k~~~~~~~~~~~Y~~~l~~~n~~~~---~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l 238 (258)
T cd07655 168 DQVKKLQDKVE-KCKQEVSKTKDKYEKALEDLNKYNP---RYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHL 238 (258)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677788888 7777777888888887777777764 46778889999999999999998888887766654
No 450
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.96 E-value=1.5e+02 Score=29.45 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 427 LQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 427 IrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
++.-|+..+.+|..-|..++.......-+.++++
T Consensus 193 ~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~ 226 (236)
T PF09325_consen 193 IKKELERFEKEKVKDFKSMLEEYAESQIEYQKKM 226 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777776666666666664
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=52.96 E-value=1.8e+02 Score=34.56 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q psy834 446 YDFVNDNIDATYKVH 460 (926)
Q Consensus 446 FKQVNenFsEIFKeL 460 (926)
+..|+..|+.+|..|
T Consensus 742 ~~~l~~~~~~if~~l 756 (880)
T PRK03918 742 LSKVGEIASEIFEEL 756 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 452
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.92 E-value=1.3e+02 Score=30.00 Aligned_cols=55 Identities=9% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 407 LDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 407 eEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
.++.+.+..+++++......+++.++.+.+.-+..|.+.-..-...|..++...+
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~ 216 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYA 216 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777778888888888788777777777888888877765
No 453
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=52.82 E-value=4e+02 Score=30.36 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 435 KHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 435 DKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
|....+.+...+..+...+..+-..|
T Consensus 73 D~~~~~~~~~e~~~l~~~l~~~e~~l 98 (359)
T PRK00591 73 DPEMREMAKEELKELEERLEELEEEL 98 (359)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666655443
No 454
>PLN03140 ABC transporter G family member; Provisional
Probab=52.76 E-value=4.3 Score=51.70 Aligned_cols=76 Identities=13% Similarity=0.057 Sum_probs=54.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||.+++||..++- +| ++..+ ||...-| |.
T Consensus 333 ~~rglSGGerkRVsia~aL~~---~p------~vlll----------DEPTsGL------------------------Ds 369 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVG---PT------KTLFM----------DEISTGL------------------------DS 369 (1470)
T ss_pred cccCCCcccceeeeehhhhcC---CC------cEEEE----------eCCCcCc------------------------cH
Confidence 356899999999999977765 44 88889 8877777 66
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecCh--hhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSP--TTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~--~t~sr~~~~~~v 659 (926)
+ +...+ .+.|.+++.. ..|-.+++|+| .+..-.|+.+-+
T Consensus 370 ~--t~~~i-------~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 370 S--TTYQI-------VKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEe
Confidence 6 55566 7788888764 44655558876 455556665543
No 455
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=52.37 E-value=1.9e+02 Score=30.00 Aligned_cols=72 Identities=6% Similarity=0.020 Sum_probs=51.3
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNID 454 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFs 454 (926)
++++++..++. +......+|-++|...-+.++.+..+ -......+-+.|..|+.+|-.-|-..+-.-...+.
T Consensus 153 ke~eK~~~K~~-k~~~~~~~a~~~Y~~~v~~l~~~~~~---~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~is 224 (239)
T cd07647 153 KEAEKLKKKAA-QCKTSAEEADSAYKSSIGCLEDARVE---WESEHATACQVFQNMEEERIKFLRNALWVHCNLGS 224 (239)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46777888887 66666677888888888877777644 55677778888899999988877555444333333
No 456
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=52.16 E-value=1.7e+02 Score=25.85 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTR 438 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEK 438 (926)
.+..+..+++ ..+..+...+++.-+=.++++.|..+-++|......++..-.+|+++.
T Consensus 4 kl~~i~~~v~-~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 4 KLEQIQEQVE-EVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4567888888 888888899999999999999999999999998888877766666554
No 457
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=51.81 E-value=1.5e+02 Score=30.85 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKF 442 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAF 442 (926)
.|...++.|...++........|..+++.|...+...+..+..+...-...|
T Consensus 180 ~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 180 DLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444445555555555555544444444444444333
No 458
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=51.64 E-value=17 Score=39.41 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhcccc
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
.--.|||||+++..||=-+|+ +|
T Consensus 146 sa~~LSGGQQQRLcIARalAv---~P 168 (253)
T COG1117 146 SALGLSGGQQQRLCIARALAV---KP 168 (253)
T ss_pred CccCCChhHHHHHHHHHHHhc---CC
Confidence 344699999999999999998 67
No 459
>PRK14160 heat shock protein GrpE; Provisional
Probab=51.37 E-value=1.9e+02 Score=30.72 Aligned_cols=79 Identities=6% Similarity=0.042 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLK--ALYKRRWILQKKFDKVKHTR-----RQKFENMYDFVNDNI 453 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrE--ELdKekeSIrELIEeLDKEK-----rEAFmkTFKQVNenF 453 (926)
+..+..++. .++..++++..+|+.+..+...-..+.. ....-+..|...++.|++-. .+.|...++-|-+.|
T Consensus 70 l~~l~~e~~-elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~~~~~l~~Gv~mi~kql 148 (211)
T PRK14160 70 NKKLENELE-ALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEGSVEDLKKGIEMTVKQF 148 (211)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 344444444 5555556777777777666554433322 12223333444444444432 145777777777888
Q ss_pred HHHHHHh
Q psy834 454 DATYKVH 460 (926)
Q Consensus 454 sEIFKeL 460 (926)
..+|.++
T Consensus 149 ~~vL~k~ 155 (211)
T PRK14160 149 KTSLEKL 155 (211)
T ss_pred HHHHHHC
Confidence 8888775
No 460
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.22 E-value=2.2e+02 Score=30.80 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 398 KEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKV 434 (926)
Q Consensus 398 KAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeL 434 (926)
.+.++...+.++++.+.++++++..++..++..|..+
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333
No 461
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.81 E-value=1.7e+02 Score=31.32 Aligned_cols=67 Identities=10% Similarity=0.203 Sum_probs=48.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 386 RQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDAT 456 (926)
Q Consensus 386 ~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEI 456 (926)
.+++ |++..+.+|-++|....+.+..... +-.+....+-+.|..++.+|-..|-..+..+...+..+
T Consensus 157 k~le-K~~~k~~ka~~~Y~~~v~~l~~~~~---~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~ 223 (269)
T cd07673 157 REIE-KAAVKSKKATESYKLYVEKYALAKA---DFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEI 223 (269)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 4444445888888877777776644 56788889999999999999988888777766655554
No 462
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.67 E-value=3.1e+02 Score=28.42 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTR--RQKFENMYDFVNDNIDATYK 458 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEK--rEAFmkTFKQVNenFsEIFK 458 (926)
+.++..+-. +|...+.+|..+-.++..++.........|...+..+...=.+|+.-+ .+.+...|.+|-...+++|.
T Consensus 50 m~ei~~eN~-~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 50 MAEISQENK-RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 555555677777777766666666655555554444433333333322 35566778888888888877
Q ss_pred Hhh
Q psy834 459 VHL 461 (926)
Q Consensus 459 eLV 461 (926)
+..
T Consensus 129 kf~ 131 (201)
T PF13851_consen 129 KFE 131 (201)
T ss_pred HHH
Confidence 764
No 463
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.35 E-value=1.3e+02 Score=29.53 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 383 GVCRQHDVKMQLQLNKEQQRLAPLLDRL--RRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 383 eL~~eL~~KLk~vnkKAIEQYEEfeEQy--EELeaRrEELdKekeSIrELIEeLDK 436 (926)
.+..++. .++..++....++..+.... ++|....+.|..+...+.+.++.|+.
T Consensus 83 ~L~~el~-~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELA-ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333 33333344444444443333 34455556666666666666666654
No 464
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.94 E-value=2.5e+02 Score=27.82 Aligned_cols=73 Identities=5% Similarity=0.061 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKV 459 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKe 459 (926)
.+...+..+.+.|..+ |+.+...++.|..+++.++...++..+..+.++.+- ..+..-..+|...+..|...
T Consensus 40 ~m~~A~~~v~kql~~v-------s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV-~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQV-------SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEV-TEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHH
Confidence 3444555555344333 666777777778888888877777777776666554 44455566666666666655
Q ss_pred h
Q psy834 460 H 460 (926)
Q Consensus 460 L 460 (926)
.
T Consensus 112 V 112 (126)
T PF07889_consen 112 V 112 (126)
T ss_pred H
Confidence 3
No 465
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.29 E-value=1.9e+02 Score=30.07 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=11.0
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHhc
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTIWK 554 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAIQK 554 (926)
.+.|+. |.+... -+|.-.|+|.+
T Consensus 211 ~~~W~~---l~~~~~--~~i~~ai~ia~ 233 (251)
T PF11932_consen 211 TGQWQW---LPDSYR--REIRKAIRIAR 233 (251)
T ss_pred CCCCeE---CCHHHH--HHHHHHHHHHh
Confidence 334555 555444 44444455543
No 466
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.96 E-value=2.5e+02 Score=32.94 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy834 440 QKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 440 EAFmkTFKQVNenFsEIFKeLV 461 (926)
+.|+..|..++..+..++..|-
T Consensus 440 ~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 440 EDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6788899999999999999984
No 467
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.94 E-value=62 Score=26.86 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 402 RLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHT 437 (926)
Q Consensus 402 QYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKE 437 (926)
+|+.+...|+.|..+.+.|..+...|+..+..|..+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577788888888888888888888887777777643
No 468
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=48.63 E-value=15 Score=39.42 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.0
Q ss_pred CcccccccCchhHHHHHHHHHHHHHhcccc
Q psy834 528 RSYVGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 528 Kr~QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
.+.+.-..|||||++++|+|-.+-. +|
T Consensus 129 r~~~~aG~LSGGEQQMLAiaRALm~---~P 155 (237)
T COG0410 129 RRNQRAGTLSGGEQQMLAIARALMS---RP 155 (237)
T ss_pred HhcCcccCCChHHHHHHHHHHHHhc---CC
Confidence 3556788999999999999987654 66
No 469
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=48.34 E-value=1.6e+02 Score=33.09 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLK------------------ALYKRRWILQKKFDKVKHTRRQKF 442 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrE------------------ELdKekeSIrELIEeLDKEKrEAF 442 (926)
+.+-+--+. +|+..|+...+.+.+-+.++++|+.|+. .|++++++|+++-..++.-|....
T Consensus 63 LQQKEV~iR-HLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 63 LQQKEVCIR-HLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q ss_pred HHHHHHHHHHHHHH
Q psy834 443 ENMYDFVNDNIDAT 456 (926)
Q Consensus 443 mkTFKQVNenFsEI 456 (926)
.+ =+.|.++|.+|
T Consensus 142 ek-DkGiQKYFvDI 154 (305)
T PF15290_consen 142 EK-DKGIQKYFVDI 154 (305)
T ss_pred hh-hhhHHHHHhhh
No 470
>KOG3859|consensus
Probab=48.30 E-value=1.2e+02 Score=34.38 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=13.8
Q ss_pred ccccccCCchhhHHHHHHHHHhhcccc
Q psy834 318 TLNFQDCTPHPLIIKIQQVFLYKKSCI 344 (926)
Q Consensus 318 ~~n~~d~~~h~Li~K~qq~fl~~K~~i 344 (926)
.|.|.|.++.--=-+.|+-|+.++.+.
T Consensus 305 ~Mgf~dv~~~~~p~s~qet~eaKr~e~ 331 (406)
T KOG3859|consen 305 EMGFKDVDPDNKPFSLQETYEAKRNEF 331 (406)
T ss_pred HcCCccCCCCCCCccHHHHHHHHHHHH
Confidence 455555555444445555555544444
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.83 E-value=1.9e+02 Score=35.41 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=7.7
Q ss_pred CCCCCcHHHHHHHHhhh
Q psy834 159 SSEFPGVERCLRRIESS 175 (926)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (926)
|.++-.+.+.+++++..
T Consensus 150 S~eL~~iR~~~~~~~~~ 166 (782)
T PRK00409 150 SEKLRGIRRQLRRKKSR 166 (782)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 472
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=47.74 E-value=66 Score=29.43 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 401 QRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 401 EQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
+.+..+.+..+++..+.+++.+.+.+|..+|+.|+......++..+=--.....+|..+|
T Consensus 22 d~~v~~i~~~e~I~~~i~~li~~k~ei~~~I~~l~d~~~r~iL~~~Yi~~~~~~~I~~~l 81 (100)
T PF07374_consen 22 DKIVKIIDLKEEIEREIDELIKEKLEIRRAINKLEDPDERLILRMRYINKLTWEQIAEEL 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHcCCCHHHHHHHH
Confidence 345555566677777888888888888889999987666655443322234456666666
No 473
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.73 E-value=1.7e+02 Score=34.01 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=39.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKV 459 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKe 459 (926)
+++..++....+...++.++.+....++++++.+..+...++.|..++++. +..+.+.+.-+|..
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~q----r~~La~~L~A~~r~ 127 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQ----RRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 333333444445555566666666666666677777777777777777444 45566666666664
No 474
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=47.72 E-value=11 Score=40.64 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=21.6
Q ss_pred ccccccCchhHHHHHHHHHHHHHhcccc
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVV 557 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP 557 (926)
.+....||||||+.|.||=++| |.+.|
T Consensus 130 ~R~y~~LSGGEqQRVqlARvLa-Ql~~~ 156 (259)
T COG4559 130 GRDYRTLSGGEQQRVQLARVLA-QLWPP 156 (259)
T ss_pred ccchhhcCchHHHHHHHHHHHH-HccCC
Confidence 4567799999999999999998 34444
No 475
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.56 E-value=95 Score=34.87 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=4.5
Q ss_pred Hhhhhcccc
Q psy834 240 LQVRNLLEL 248 (926)
Q Consensus 240 ~~~~~~~~~ 248 (926)
+.|.+.|++
T Consensus 176 i~V~~~l~i 184 (451)
T PF03961_consen 176 ISVDPVLEI 184 (451)
T ss_pred EEEEEeeEe
Confidence 445555554
No 476
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=47.00 E-value=13 Score=40.41 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=49.4
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+...+|||||++.+++|=.+|+ +| =|.+. ||.-.-|
T Consensus 104 ~ryPhelSGGQrQRi~IARALal---~P------~liV~----------DEpvSaL------------------------ 140 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALAL---NP------KLIVA----------DEPVSAL------------------------ 140 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhh---CC------cEEEe----------cCchhhc------------------------
Confidence 45678999999999999999998 78 45666 6655444
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecCh
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSP 647 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~ 647 (926)
.|+=.||. -|+|.++-..-+..|+. +|.=
T Consensus 141 -----DvSiqaqI----lnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 141 -----DVSVQAQI----LNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred -----chhHHHHH----HHHHHHHHHHhCCeEEEEEEEH
Confidence 45555554 57888888887878887 6653
No 477
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=46.94 E-value=2.3e+02 Score=29.97 Aligned_cols=75 Identities=5% Similarity=0.065 Sum_probs=54.4
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY 457 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF 457 (926)
++++++..++. +......+|-++|....+.+..+..+.+ ++....-+.|..|+.+|-.-|-..+=.+..+++.++
T Consensus 153 keleK~~~K~~-k~~~~~~~a~~~Y~~~v~~l~~~~~~w~---~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~~s~~C 227 (242)
T cd07671 153 KQSEKSQNKAK-QCRDAATEAERVYKQNIEQLDKARTEWE---TEHILTCEVFQLQEDDRITILRNALWVHCNHFSMQC 227 (242)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 36777777777 6666667788888777777766666554 466667777899999998888777766666665544
No 478
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.89 E-value=1.9e+02 Score=30.29 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy834 417 LKALYKRRWILQKKFDKVKHTR 438 (926)
Q Consensus 417 rEELdKekeSIrELIEeLDKEK 438 (926)
..+|+++...+++.++.++.+.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 479
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=46.73 E-value=9 Score=42.72 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=20.9
Q ss_pred hhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCC
Q psy834 631 PEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGS 666 (926)
Q Consensus 631 ~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~ 666 (926)
+.+....+.=.+. +|+.--..|+-.- |-+-|+|-
T Consensus 172 ERL~~e~~IPIlYVSHS~~Ev~RLAd~--vV~le~Gk 206 (352)
T COG4148 172 ERLRDEINIPILYVSHSLDEVLRLADR--VVVLENGK 206 (352)
T ss_pred HHHHHhcCCCEEEEecCHHHHHhhhhe--EEEecCCe
Confidence 3445555555554 9998888887543 44556663
No 480
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=46.55 E-value=12 Score=39.94 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.5
Q ss_pred cccccccCchhHHHHHHHHHHHHH
Q psy834 529 SYVGIQHLSGGERTLAALAMIFTI 552 (926)
Q Consensus 529 r~QsIQQLSGGEKSLVALALIFAI 552 (926)
.....-+|||||++.+|||=-+|+
T Consensus 146 ~~~YP~~LSGGQQQR~aIARaLam 169 (256)
T COG4598 146 ADAYPAHLSGGQQQRVAIARALAM 169 (256)
T ss_pred hhcCccccCchHHHHHHHHHHHhc
Confidence 334556999999999999999998
No 481
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=46.36 E-value=1.2e+02 Score=31.51 Aligned_cols=60 Identities=8% Similarity=0.115 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQL----NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQ 440 (926)
Q Consensus 380 dleeL~~eL~~KLk~vn----kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrE 440 (926)
.+..+.+++. .++... ..|..++..++.+..++..+--++..+...|+..|..++++..+
T Consensus 151 ~l~~~k~~ie-~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 151 ELAKLKKEIE-EVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555 444443 46777888888999999999999999999999888888877654
No 482
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=46.31 E-value=2.5e+02 Score=29.67 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=48.9
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDF 448 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQ 448 (926)
+.++++..+|. +.+....+|-++|....+.++.+..+.++ +....-+.|..|+.+|-+-|-..+=.
T Consensus 154 ke~~K~~~Kl~-K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~---~~~~~c~~fq~lEeeRi~f~k~~lw~ 219 (240)
T cd07672 154 KQQEKLFAKLA-QSKQNAEDADRLYMQNISVLDKIREDWQK---EHVKACEFFEKQECERINFFRNAVWT 219 (240)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888 77777788888888887777777666554 44467777889999888776655433
No 483
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.51 E-value=3.8e+02 Score=27.97 Aligned_cols=40 Identities=8% Similarity=0.065 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK 436 (926)
....++|..+..+.+.|....+.+.+...+.+..|+.|++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544444444444443
No 484
>smart00721 BAR BAR domain.
Probab=44.99 E-value=3.1e+02 Score=27.07 Aligned_cols=41 Identities=5% Similarity=-0.009 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 420 LYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 420 LdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
++++.+..++.|+.+...-.+.+...+......|...|..+
T Consensus 175 ~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~ 215 (239)
T smart00721 175 AEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQAL 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence 44444444444444444444444444433333344444333
No 485
>KOG0056|consensus
Probab=44.71 E-value=9.4 Score=45.26 Aligned_cols=73 Identities=29% Similarity=0.288 Sum_probs=45.8
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
--||||||+.||+|= +|.| +| -|..+ ||--..+ |.
T Consensus 673 LkLSGGEKQRVAiAR--tiLK-~P------~iIlL----------DEATSAL-------------------------DT- 707 (790)
T KOG0056|consen 673 LKLSGGEKQRVAIAR--TILK-AP------SIILL----------DEATSAL-------------------------DT- 707 (790)
T ss_pred cccCCcchhhHHHHH--HHhc-CC------cEEEE----------cchhhhc-------------------------CC-
Confidence 469999999999985 3433 33 24455 6655555 22
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|-+|-.|| -|..+++. .|-.+|-|.=-|.--.|-.+-|
T Consensus 708 -~tER~IQa------aL~rlca~-RTtIVvAHRLSTivnAD~ILvi 745 (790)
T KOG0056|consen 708 -NTERAIQA------ALARLCAN-RTTIVVAHRLSTIVNADLILVI 745 (790)
T ss_pred -ccHHHHHH------HHHHHhcC-CceEEEeeeehheecccEEEEE
Confidence 66777665 35666653 5567778866665555555544
No 486
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=44.34 E-value=2.7e+02 Score=25.91 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy834 438 RRQKFENMYDFVNDNI 453 (926)
Q Consensus 438 KrEAFmkTFKQVNenF 453 (926)
....|...++.+...|
T Consensus 105 ~~~~~~~~~~~~~~~l 120 (202)
T PF01442_consen 105 LESRLEEEVDELEESL 120 (202)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333333333333
No 487
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.93 E-value=3.2e+02 Score=29.26 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPL--------LDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVND 451 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEf--------eEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNe 451 (926)
.+..+.... +-+.+..-|+++|..+ +..|+.|.++++..+++.+.+.+.|+.++.--...|.+-=+.+..
T Consensus 30 Ve~Ardsq~-eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~ 107 (201)
T PF11172_consen 30 VEDARDSQQ-EAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQ 107 (201)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 5555566788888764 889999999999999999999999999988877777654444443
No 488
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.90 E-value=3.7e+02 Score=28.73 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 398 KEQQRLAP----LLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENM 445 (926)
Q Consensus 398 KAIEQYEE----feEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkT 445 (926)
+.|++|.+ +..++....+++..+...+..++..|...+.++..++..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 3445555566666667777777777777777776655443
No 489
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=43.76 E-value=3.6e+02 Score=28.13 Aligned_cols=52 Identities=8% Similarity=0.057 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 410 LRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 410 yEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
...+.+.+.++.+...+|...|.+|.....+++.....++++.|.++-..+.
T Consensus 80 ~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~i 131 (165)
T PF09602_consen 80 GNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLI 131 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3556677778888888888888888888888999999999999888877764
No 490
>PRK14145 heat shock protein GrpE; Provisional
Probab=43.41 E-value=3.2e+02 Score=28.76 Aligned_cols=80 Identities=4% Similarity=-0.012 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR-----RQKFENMYDFVNDN 452 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK-----rEAFmkTFKQVNen 452 (926)
.+.+++.++. .++...+++..+|+.+..+...-..+..+ ...-..+|...++.|++-. .+.|...++-|-+.
T Consensus 53 ~l~~le~e~~-el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~~~~~l~~Gv~mi~k~ 131 (196)
T PRK14145 53 KLQQKEVEAQ-EYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSGDYNSLKEGIELIYRQ 131 (196)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3445555555 55566678888888887776554433322 2223333444444444321 23466677777777
Q ss_pred HHHHHHHh
Q psy834 453 IDATYKVH 460 (926)
Q Consensus 453 FsEIFKeL 460 (926)
|..+|.++
T Consensus 132 l~~vL~k~ 139 (196)
T PRK14145 132 FKKILDKF 139 (196)
T ss_pred HHHHHHHC
Confidence 77777765
No 491
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=43.32 E-value=2.3e+02 Score=24.89 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPL----------------LDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQ---- 440 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEf----------------eEQyEELeaRrEELdKekeSIrELIEeLDKEKrE---- 440 (926)
...+..... .....+..++++|..+ .++...|..+++.+......+...+..++..-..
T Consensus 30 ~~~l~~~~~-~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~ 108 (127)
T smart00502 30 IQEVEENAA-DVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPT 108 (127)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy834 441 KFENMYDFVNDNIDATYK 458 (926)
Q Consensus 441 AFmkTFKQVNenFsEIFK 458 (926)
.|+.+++.|...+..+.+
T Consensus 109 e~L~~~~~i~~rl~~l~~ 126 (127)
T smart00502 109 ELLLSKKLIIERLQNLLK 126 (127)
T ss_pred HHHHHHHHHHHHHHHHhh
No 492
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=43.16 E-value=1.1e+02 Score=34.82 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhh
Q psy834 435 KHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIV 485 (926)
Q Consensus 435 DKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv 485 (926)
|.+.++.+..-+..+...+..+-++|. +|.+=..|.+..|++|.
T Consensus 74 D~em~ema~~Ei~~~~~~~~~le~~L~-------~lLlPkDpnd~knvilE 117 (363)
T COG0216 74 DPEMREMAEEEIKELEAKIEELEEELK-------ILLLPKDPNDDKNIILE 117 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCCCCCCcCeEEE
Confidence 567777788888888888888888885 23344677777776664
No 493
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.02 E-value=1.7e+02 Score=29.94 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 408 DRLRRYEADLKALYKRRWILQKKFDKV-------KHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 408 EQyEELeaRrEELdKekeSIrELIEeL-------DKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
+.+..+.+++++|.+....++..++.+ =.++.+.+..+-+.++.--+.||-..
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555666666666666666665533 23455566666677777777777543
No 494
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.79 E-value=2.9e+02 Score=26.49 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 382 GGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 382 eeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK 436 (926)
..|-..+. .++.++..-.+++.+++.+..+|.++=..|+-+-..+++.+.++++
T Consensus 4 ~~l~~~l~-~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLD-QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666 7777777888889999999999999999999999999999888876
No 495
>PRK02224 chromosome segregation protein; Provisional
Probab=42.61 E-value=2.2e+02 Score=34.11 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
..++++++++.++++.+...++.+..-.+.+..+.+.++.-+..........|...|+.+|..+.
T Consensus 687 ~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (880)
T PRK02224 687 ENELEELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLERMLNETFDLVY 751 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555556666666666555555444444444444444444444445666678888888764
No 496
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.43 E-value=1.1e+02 Score=31.85 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy834 406 LLDRLRRYEADLKALYKRRWIL 427 (926)
Q Consensus 406 feEQyEELeaRrEELdKekeSI 427 (926)
+.++...|.++++.+..+.+.+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333
No 497
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.34 E-value=48 Score=32.89 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHhhHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQL--NKEQQRL---APLLDRLRRYEADLKALYK 422 (926)
Q Consensus 380 dleeL~~eL~~KLk~vn--kKAIEQY---EEfeEQyEELeaRrEELdK 422 (926)
+..++..++. ++++++ .-|.||| ..++.++++++++++++.+
T Consensus 41 ~~~~l~~Ei~-~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 41 EQRQLRKEIL-QLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHH-HHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666 666665 1233333 3344444444444444333
No 498
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=41.90 E-value=3.1e+02 Score=26.05 Aligned_cols=19 Identities=5% Similarity=0.337 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy834 437 TRRQKFENMYDFVNDNIDA 455 (926)
Q Consensus 437 EKrEAFmkTFKQVNenFsE 455 (926)
++.+.-...|+.++..+..
T Consensus 168 ~~l~~a~~~f~~~~~~l~~ 186 (229)
T PF03114_consen 168 EKLEEAKEEFEALNEELKE 186 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 499
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.84 E-value=96 Score=28.78 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=8.7
Q ss_pred hhhhhCCCCCCCc
Q psy834 352 SLDSIGSSPSKQH 364 (926)
Q Consensus 352 ~IRkLGsLPeeA~ 364 (926)
.++.|..||.+..
T Consensus 39 v~~eL~~l~~d~~ 51 (110)
T TIGR02338 39 ALEELERLPDDTP 51 (110)
T ss_pred HHHHHHcCCCcch
Confidence 4566778887653
No 500
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=41.75 E-value=3.2e+02 Score=30.33 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQL----------NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVN 450 (926)
Q Consensus 381 leeL~~eL~~KLk~vn----------kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVN 450 (926)
+.++...++ .+...+ ..-=++-.+|...+..|.....++....+..++.+..++.. |..-.+.|.
T Consensus 300 Ly~~l~~~~-~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~----~~~N~~~i~ 374 (388)
T PF04912_consen 300 LYEILPRWD-PYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK----FKENMETIE 374 (388)
T ss_pred HHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q ss_pred HHHHHHHHHh
Q psy834 451 DNIDATYKVH 460 (926)
Q Consensus 451 enFsEIFKeL 460 (926)
.+|..|-.++
T Consensus 375 ~n~~~le~Ri 384 (388)
T PF04912_consen 375 KNVKKLEERI 384 (388)
T ss_pred HHHHHHHHHH
Done!