Query psy834
Match_columns 926
No_of_seqs 243 out of 1197
Neff 2.2
Searched_HMMs 29240
Date Sat Aug 17 01:11:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kta_B Chromosome segregation 99.9 3.8E-24 1.3E-28 202.1 9.9 144 434-666 1-145 (173)
2 1w1w_A Structural maintenance 99.9 4.1E-22 1.4E-26 205.2 7.2 194 397-667 224-418 (430)
3 1e69_A Chromosome segregation 98.6 3.3E-08 1.1E-12 98.9 7.0 134 444-663 165-298 (322)
4 4ad8_A DNA repair protein RECN 98.4 6E-06 2.1E-10 88.0 18.1 94 518-662 378-473 (517)
5 3auy_A DNA double-strand break 97.9 5.3E-05 1.8E-09 77.4 12.1 91 519-660 265-359 (371)
6 4aby_A DNA repair protein RECN 97.8 0.00016 5.4E-09 73.3 12.4 90 519-659 277-368 (415)
7 3qkt_A DNA double-strand break 97.7 2.9E-05 9.9E-10 78.5 5.8 88 527-662 240-329 (339)
8 1f2t_B RAD50 ABC-ATPase; DNA d 97.5 0.00015 5E-09 67.2 6.7 94 518-660 41-136 (148)
9 3qf7_A RAD50; ABC-ATPase, ATPa 97.3 0.0067 2.3E-07 62.6 16.3 80 531-659 275-357 (365)
10 1mv5_A LMRA, multidrug resista 95.6 0.0076 2.6E-07 58.7 4.1 75 532-659 136-210 (243)
11 2ghi_A Transport protein; mult 95.3 0.0059 2E-07 60.4 2.1 75 532-659 152-226 (260)
12 3tif_A Uncharacterized ABC tra 95.2 0.004 1.4E-07 60.6 0.7 75 531-657 141-216 (235)
13 2ff7_A Alpha-hemolysin translo 95.1 0.0077 2.6E-07 59.2 2.3 75 532-659 142-216 (247)
14 2o5v_A DNA replication and rep 94.9 0.094 3.2E-06 54.9 9.8 39 531-585 260-305 (359)
15 1ji0_A ABC transporter; ATP bi 94.8 0.012 4E-07 57.5 2.5 76 532-659 136-212 (240)
16 2ixe_A Antigen peptide transpo 94.7 0.011 3.6E-07 59.1 2.2 76 532-659 153-229 (271)
17 2pcj_A ABC transporter, lipopr 94.7 0.0075 2.6E-07 58.2 0.9 74 532-657 137-210 (224)
18 2d2e_A SUFC protein; ABC-ATPas 94.6 0.0087 3E-07 58.6 1.2 75 533-659 140-217 (250)
19 1vpl_A ABC transporter, ATP-bi 94.5 0.011 3.9E-07 58.6 1.7 76 532-659 143-219 (256)
20 2yz2_A Putative ABC transporte 94.4 0.01 3.4E-07 58.8 1.1 76 532-659 135-211 (266)
21 3nh6_A ATP-binding cassette SU 94.3 0.017 5.7E-07 59.4 2.5 74 533-659 188-261 (306)
22 2nq2_C Hypothetical ABC transp 94.3 0.022 7.4E-07 56.3 3.2 76 532-659 125-202 (253)
23 1b0u_A Histidine permease; ABC 94.3 0.019 6.4E-07 56.9 2.7 76 532-659 150-226 (262)
24 2zu0_C Probable ATP-dependent 94.2 0.018 6E-07 57.2 2.4 73 535-659 164-238 (267)
25 3b5x_A Lipid A export ATP-bind 94.2 0.022 7.6E-07 61.8 3.4 74 533-659 478-551 (582)
26 1sgw_A Putative ABC transporte 94.2 0.011 3.9E-07 57.4 1.0 69 532-652 130-198 (214)
27 2yl4_A ATP-binding cassette SU 94.2 0.023 8E-07 61.8 3.4 74 533-659 481-554 (595)
28 1g6h_A High-affinity branched- 94.0 0.016 5.5E-07 57.0 1.7 77 531-659 149-226 (257)
29 2olj_A Amino acid ABC transpor 94.0 0.02 6.7E-07 57.3 2.3 76 532-659 156-232 (263)
30 3gfo_A Cobalt import ATP-bindi 93.7 0.013 4.4E-07 59.0 0.4 77 531-659 139-217 (275)
31 2qi9_C Vitamin B12 import ATP- 93.6 0.033 1.1E-06 55.1 2.9 79 532-659 123-206 (249)
32 3ux8_A Excinuclease ABC, A sub 93.6 0.03 1E-06 61.8 2.8 78 531-659 198-276 (670)
33 3ux8_A Excinuclease ABC, A sub 93.5 0.018 6E-07 63.5 1.0 79 531-658 539-617 (670)
34 4g1u_C Hemin import ATP-bindin 93.5 0.028 9.6E-07 56.0 2.2 80 531-659 137-221 (266)
35 2ihy_A ABC transporter, ATP-bi 93.5 0.022 7.4E-07 57.3 1.4 75 532-658 158-235 (279)
36 3qf4_B Uncharacterized ABC tra 93.4 0.032 1.1E-06 61.1 2.8 74 533-659 489-562 (598)
37 2pze_A Cystic fibrosis transme 93.4 0.034 1.2E-06 53.8 2.7 75 533-659 128-202 (229)
38 2cbz_A Multidrug resistance-as 93.4 0.029 1E-06 54.7 2.1 35 532-585 124-158 (237)
39 2onk_A Molybdate/tungstate ABC 93.3 0.025 8.6E-07 55.6 1.7 76 532-659 123-200 (240)
40 2pjz_A Hypothetical protein ST 93.0 0.036 1.2E-06 55.4 2.3 74 531-659 124-199 (263)
41 3b60_A Lipid A export ATP-bind 92.9 0.034 1.1E-06 60.5 1.9 74 533-659 478-551 (582)
42 3qf4_A ABC transporter, ATP-bi 92.7 0.036 1.2E-06 60.6 1.9 74 533-659 477-550 (587)
43 3pih_A Uvrabc system protein A 92.3 0.032 1.1E-06 65.2 0.9 80 531-659 801-880 (916)
44 4a82_A Cystic fibrosis transme 92.2 0.049 1.7E-06 59.2 2.2 75 532-659 474-548 (578)
45 1oxx_K GLCV, glucose, ABC tran 91.9 0.07 2.4E-06 55.7 2.8 74 532-657 137-212 (353)
46 2bbs_A Cystic fibrosis transme 91.8 0.07 2.4E-06 54.1 2.6 75 533-659 157-231 (290)
47 3pih_A Uvrabc system protein A 91.8 0.08 2.7E-06 62.0 3.3 78 531-659 460-538 (916)
48 3tui_C Methionine import ATP-b 91.1 0.053 1.8E-06 57.5 0.9 75 532-658 160-236 (366)
49 3d31_A Sulfate/molybdate ABC t 90.9 0.061 2.1E-06 56.2 1.1 74 532-657 124-199 (348)
50 1g29_1 MALK, maltose transport 90.9 0.078 2.7E-06 55.8 1.9 75 532-658 136-212 (372)
51 1z47_A CYSA, putative ABC-tran 90.5 0.08 2.7E-06 55.7 1.6 74 532-657 142-217 (355)
52 2yyz_A Sugar ABC transporter, 90.2 0.093 3.2E-06 55.2 1.7 28 532-568 130-157 (359)
53 2it1_A 362AA long hypothetical 89.5 0.08 2.7E-06 55.7 0.6 75 532-658 130-206 (362)
54 2r6f_A Excinuclease ABC subuni 89.4 0.16 5.4E-06 60.2 3.0 79 531-659 500-578 (972)
55 1v43_A Sugar-binding transport 89.3 0.09 3.1E-06 55.5 0.8 29 531-568 137-165 (372)
56 3bk7_A ABC transporter ATP-bin 89.3 0.15 5E-06 56.8 2.5 77 529-657 222-299 (607)
57 2vf7_A UVRA2, excinuclease ABC 88.4 0.18 6.1E-06 58.7 2.5 78 531-659 375-453 (842)
58 3rlf_A Maltose/maltodextrin im 88.3 0.17 5.8E-06 53.9 2.1 29 531-568 129-157 (381)
59 1yqt_A RNAse L inhibitor; ATP- 87.5 0.23 7.7E-06 54.3 2.5 75 531-657 154-229 (538)
60 2ygr_A Uvrabc system protein A 87.4 0.18 6.3E-06 59.8 1.9 79 531-659 517-595 (993)
61 3fvq_A Fe(3+) IONS import ATP- 87.1 0.2 6.8E-06 52.9 1.7 29 531-568 134-162 (359)
62 4f4c_A Multidrug resistance pr 86.9 0.26 8.8E-06 59.1 2.7 74 533-659 552-625 (1321)
63 3j16_B RLI1P; ribosome recycli 86.8 0.32 1.1E-05 54.3 3.2 76 530-657 216-292 (608)
64 3bk7_A ABC transporter ATP-bin 85.9 0.29 9.9E-06 54.5 2.3 77 531-659 467-545 (607)
65 2ygr_A Uvrabc system protein A 85.6 0.19 6.4E-06 59.7 0.6 80 530-658 858-937 (993)
66 2vf7_A UVRA2, excinuclease ABC 85.2 0.14 4.7E-06 59.6 -0.7 81 530-659 725-805 (842)
67 3ozx_A RNAse L inhibitor; ATP 85.0 0.47 1.6E-05 52.1 3.4 72 531-655 134-205 (538)
68 2r6f_A Excinuclease ABC subuni 85.0 0.19 6.5E-06 59.6 0.3 80 530-658 840-919 (972)
69 3ozx_A RNAse L inhibitor; ATP 84.6 0.32 1.1E-05 53.4 1.8 77 531-659 381-459 (538)
70 3j16_B RLI1P; ribosome recycli 84.1 0.34 1.2E-05 54.1 1.8 77 531-659 463-541 (608)
71 3g5u_A MCG1178, multidrug resi 83.9 0.38 1.3E-05 57.5 2.2 74 533-659 524-597 (1284)
72 1yqt_A RNAse L inhibitor; ATP- 83.4 0.36 1.2E-05 52.7 1.5 77 531-659 397-475 (538)
73 3gd7_A Fusion complex of cysti 82.5 0.19 6.5E-06 53.4 -1.0 26 534-568 154-179 (390)
74 2iw3_A Elongation factor 3A; a 78.6 0.92 3.1E-05 53.9 2.9 74 531-659 544-618 (986)
75 1ye8_A Protein THEP1, hypothet 78.6 0.86 2.9E-05 42.6 2.1 35 531-585 72-111 (178)
76 3oja_B Anopheles plasmodium-re 78.1 7.1 0.00024 41.6 9.1 41 391-431 513-553 (597)
77 3g5u_A MCG1178, multidrug resi 75.9 0.9 3.1E-05 54.4 1.8 73 534-659 1170-1242(1284)
78 3u59_A Tropomyosin beta chain; 69.5 49 0.0017 29.2 10.9 59 381-440 4-62 (101)
79 4f4c_A Multidrug resistance pr 69.0 1.6 5.3E-05 52.6 1.6 81 534-667 1216-1299(1321)
80 1c1g_A Tropomyosin; contractIl 67.5 72 0.0025 28.9 13.1 62 398-460 220-281 (284)
81 3u1c_A Tropomyosin alpha-1 cha 66.6 57 0.002 29.1 10.8 58 381-439 4-61 (101)
82 3hnw_A Uncharacterized protein 65.6 14 0.00049 34.8 7.1 46 392-437 66-111 (138)
83 2iw3_A Elongation factor 3A; a 65.3 2.4 8.2E-05 50.4 2.2 29 531-568 897-925 (986)
84 1ic2_A Tropomyosin alpha chain 63.8 63 0.0022 27.6 10.1 55 383-438 3-57 (81)
85 3na7_A HP0958; flagellar bioge 63.7 75 0.0026 31.6 12.2 12 449-460 173-184 (256)
86 3nmd_A CGMP dependent protein 61.9 22 0.00076 31.2 7.0 46 388-434 21-66 (72)
87 2efr_A General control protein 61.8 1E+02 0.0034 30.0 12.2 17 444-460 119-135 (155)
88 2jee_A YIIU; FTSZ, septum, coi 61.2 44 0.0015 29.8 8.9 48 391-438 10-64 (81)
89 4ani_A Protein GRPE; chaperone 59.2 79 0.0027 32.0 11.5 80 380-460 67-156 (213)
90 2avr_X Adhesion A; antiparalle 58.0 66 0.0023 30.4 9.9 79 382-461 5-88 (119)
91 3iv1_A Tumor susceptibility ge 55.5 68 0.0023 28.4 9.0 42 399-440 16-57 (78)
92 2v0o_A FCHO2, FCH domain only 54.2 1.4E+02 0.005 28.6 12.1 61 391-454 167-227 (276)
93 2x3v_A Syndapin I, protein kin 53.4 93 0.0032 31.2 11.0 67 380-450 184-250 (337)
94 3aco_A Pacsin2, protein kinase 53.0 66 0.0023 32.7 9.9 69 379-451 192-260 (350)
95 2p4w_A Transcriptional regulat 52.4 68 0.0023 31.1 9.5 57 405-461 126-182 (202)
96 1ik9_A DNA repair protein XRCC 51.4 79 0.0027 31.7 10.0 25 316-340 53-77 (213)
97 1xaw_A Occludin; coiled-coil, 50.7 71 0.0024 30.8 9.1 36 391-426 49-84 (140)
98 3htk_A Structural maintenance 49.5 97 0.0033 24.6 8.7 40 398-437 16-55 (60)
99 3euj_A Chromosome partition pr 48.8 45 0.0015 36.7 8.5 26 529-554 371-398 (483)
100 1wle_A Seryl-tRNA synthetase; 47.5 1.4E+02 0.0047 33.3 12.0 39 400-438 69-107 (501)
101 1m1j_B Fibrinogen beta chain; 47.5 1.4E+02 0.0049 33.2 12.1 11 309-319 67-77 (464)
102 2zqm_A Prefoldin beta subunit 47.1 50 0.0017 28.6 6.9 36 351-389 41-76 (117)
103 3qne_A Seryl-tRNA synthetase, 46.7 74 0.0025 35.5 9.7 54 380-435 14-67 (485)
104 2dfs_A Myosin-5A; myosin-V, in 44.5 1.4E+02 0.0048 35.9 12.3 56 398-454 967-1022(1080)
105 3na7_A HP0958; flagellar bioge 43.7 1.4E+02 0.0048 29.7 10.4 54 381-435 92-145 (256)
106 2eqb_B RAB guanine nucleotide 43.5 1.3E+02 0.0044 27.7 9.1 56 379-435 5-60 (97)
107 2wvr_A Geminin; DNA replicatio 43.4 1.3E+02 0.0044 30.8 10.0 50 396-461 110-159 (209)
108 2npi_A Protein CLP1; CLP1-PCF1 42.1 6.5 0.00022 42.5 0.7 27 533-568 233-265 (460)
109 1sfc_A VAMP 2, protein (synapt 42.1 1.7E+02 0.0058 26.0 9.6 56 380-436 31-86 (96)
110 1z56_A Ligase interacting fact 41.8 7.5 0.00025 40.4 1.0 101 346-460 130-230 (246)
111 3haj_A Human pacsin2 F-BAR; pa 41.7 88 0.003 33.7 9.2 68 379-450 185-252 (486)
112 3u1c_A Tropomyosin alpha-1 cha 41.6 1.9E+02 0.0065 25.7 10.1 42 391-432 34-75 (101)
113 3u59_A Tropomyosin beta chain; 40.9 1.9E+02 0.0065 25.5 10.1 33 397-429 40-72 (101)
114 3hd7_A Vesicle-associated memb 40.9 1.8E+02 0.0063 25.4 9.6 57 380-437 6-62 (91)
115 3abh_A Pacsin2, protein kinase 40.6 61 0.0021 32.2 7.3 68 381-452 194-261 (312)
116 1urq_A M-tomosyn isoform; tran 40.4 1.6E+02 0.0056 24.6 9.1 57 380-437 5-61 (63)
117 1uii_A Geminin; human, DNA rep 40.4 1.3E+02 0.0045 27.0 8.5 41 395-435 40-80 (83)
118 3oja_A Leucine-rich immune mol 38.4 1.1E+02 0.0038 32.1 9.1 46 415-461 428-473 (487)
119 3bas_A Myosin heavy chain, str 38.4 2E+02 0.0068 25.1 9.9 66 391-457 18-83 (89)
120 3d5a_X RF1, peptide chain rele 37.9 1E+02 0.0035 33.4 8.9 12 637-648 235-246 (354)
121 3m3w_A Pacsin3, protein kinase 37.9 64 0.0022 32.8 7.1 54 395-451 198-251 (320)
122 3vkg_A Dynein heavy chain, cyt 37.8 71 0.0024 42.8 9.0 56 380-436 2015-2070(3245)
123 4etp_A Kinesin-like protein KA 37.8 97 0.0033 33.2 8.7 37 405-441 14-50 (403)
124 3ghg_A Fibrinogen alpha chain; 37.4 1.4E+02 0.0049 34.2 10.2 34 426-460 114-147 (562)
125 3ol1_A Vimentin; structural ge 36.4 2.5E+02 0.0085 25.6 11.1 60 380-440 21-80 (119)
126 1fxk_A Prefoldin; archaeal pro 35.4 40 0.0014 28.9 4.4 36 351-389 36-71 (107)
127 1i84_S Smooth muscle myosin he 34.7 1.6E+02 0.0055 35.3 10.7 49 382-431 860-908 (1184)
128 2fic_A Bridging integrator 1; 34.3 2.7E+02 0.0092 26.8 10.5 34 424-457 188-221 (251)
129 1ic2_A Tropomyosin alpha chain 33.6 2E+02 0.0069 24.5 8.4 13 403-415 43-55 (81)
130 3rrk_A V-type ATPase 116 kDa s 32.8 1.5E+02 0.0052 30.1 8.8 8 470-477 287-295 (357)
131 2nps_A VAMP-4, vesicle-associa 32.1 2.3E+02 0.0078 23.8 8.7 55 380-435 9-63 (74)
132 3sjb_C Golgi to ER traffic pro 31.7 1.2E+02 0.004 27.7 6.9 50 380-430 24-78 (93)
133 3vkg_A Dynein heavy chain, cyt 31.0 2.2E+02 0.0075 38.5 11.8 41 398-438 2046-2086(3245)
134 2dq0_A Seryl-tRNA synthetase; 30.8 1E+02 0.0035 33.7 7.6 35 400-434 30-64 (455)
135 1cii_A Colicin IA; bacteriocin 30.0 5.1E+02 0.017 29.7 12.8 17 228-244 245-261 (602)
136 1i84_S Smooth muscle myosin he 29.8 1.8E+02 0.0061 34.9 10.0 55 379-434 864-918 (1184)
137 1gqe_A Release factor 2, RF2; 29.5 5.8E+02 0.02 27.7 16.1 12 637-648 257-268 (365)
138 3gp4_A Transcriptional regulat 29.3 2.5E+02 0.0085 25.9 8.9 27 409-435 82-108 (142)
139 1n7s_A Vesicle-associated memb 28.3 2.4E+02 0.0082 22.9 9.6 56 380-436 5-60 (63)
140 3i2w_A Syndapin, LD46328P; EFC 27.5 1.1E+02 0.0038 30.0 6.6 60 391-453 181-240 (290)
141 1uru_A Amphiphysin; endocytosi 27.2 3.7E+02 0.013 25.4 10.0 34 427-460 189-222 (244)
142 4gp7_A Metallophosphoesterase; 27.0 3.1 0.00011 37.8 -4.2 30 627-656 139-168 (171)
143 1lwu_C Fibrinogen gamma chain; 26.4 1.4E+02 0.0048 31.8 7.5 42 380-422 6-47 (323)
144 4avm_A Bridging integrator 2; 25.9 4.9E+02 0.017 25.7 11.8 64 398-461 136-206 (237)
145 3ter_A Mammalian stromal inter 25.9 1.6E+02 0.0056 28.4 7.1 32 411-442 48-79 (136)
146 2avr_X Adhesion A; antiparalle 25.7 1.4E+02 0.0048 28.3 6.6 28 316-343 8-35 (119)
147 1gmj_A ATPase inhibitor; coile 25.7 1.8E+02 0.0062 26.2 6.9 39 398-436 37-79 (84)
148 4ioe_A Secreted protein ESXB; 25.5 2.7E+02 0.0092 22.6 8.6 13 438-450 50-62 (93)
149 2ve7_C Kinetochore protein NUF 25.5 54 0.0019 33.3 4.1 64 397-461 137-200 (250)
150 2b9c_A Striated-muscle alpha t 25.1 3.7E+02 0.013 25.6 9.4 40 397-436 69-108 (147)
151 2dfs_A Myosin-5A; myosin-V, in 24.9 3.5E+02 0.012 32.6 11.3 25 160-185 487-511 (1080)
152 1zbt_A RF-1, peptide chain rel 24.8 1.2E+02 0.004 33.1 6.7 82 378-460 16-110 (371)
153 3lss_A Seryl-tRNA synthetase; 24.7 2.3E+02 0.008 31.5 9.1 36 400-435 36-71 (484)
154 2l5g_A GPS2 protein, G protein 24.2 1.2E+02 0.0041 24.1 4.8 28 417-444 10-37 (38)
155 1wlq_A Geminin; coiled-coil; 2 24.0 3E+02 0.01 24.8 8.0 40 396-435 33-72 (83)
156 1dkg_A Nucleotide exchange fac 23.7 4.8E+02 0.017 25.7 10.3 79 381-460 44-137 (197)
157 3gpv_A Transcriptional regulat 23.7 4.3E+02 0.015 24.3 10.3 27 409-435 96-122 (148)
158 3gwk_C SAG1039, putative uncha 23.7 2.1E+02 0.0072 23.6 6.7 58 403-460 10-71 (98)
159 3oja_A Leucine-rich immune mol 23.6 6.5E+02 0.022 26.3 13.0 38 407-444 434-471 (487)
160 3sja_C Golgi to ER traffic pro 23.6 1.1E+02 0.0037 26.5 4.9 44 381-425 8-56 (65)
161 1ik9_A DNA repair protein XRCC 23.3 4.3E+02 0.015 26.5 9.9 51 410-460 148-198 (213)
162 3b5n_A Synaptobrevin homolog 1 23.2 3E+02 0.01 22.3 9.6 55 381-436 4-58 (61)
163 2lw1_A ABC transporter ATP-bin 23.2 2.5E+02 0.0087 24.1 7.3 15 443-457 62-76 (89)
164 2v71_A Nuclear distribution pr 22.9 3.2E+02 0.011 27.4 8.9 19 442-460 128-146 (189)
165 2eqb_B RAB guanine nucleotide 22.8 4.5E+02 0.015 24.1 10.2 34 402-435 20-53 (97)
166 3a7p_A Autophagy protein 16; c 22.7 5.5E+02 0.019 25.2 11.8 70 382-452 71-140 (152)
167 1r8d_A Transcription activator 22.5 3.7E+02 0.013 23.2 8.3 29 409-437 76-104 (109)
168 1wt6_A Myotonin-protein kinase 22.3 2.9E+02 0.0098 24.8 7.5 40 401-440 31-70 (81)
169 1deq_A Fibrinogen (alpha chain 22.2 5.5E+02 0.019 28.4 11.2 8 537-544 223-230 (390)
170 3u06_A Protein claret segregat 21.9 2.2E+02 0.0076 30.8 8.1 36 404-439 13-48 (412)
171 2k48_A Nucleoprotein; viral pr 21.8 4.7E+02 0.016 24.6 9.0 64 378-442 34-102 (107)
172 1ses_A Seryl-tRNA synthetase; 21.7 3E+02 0.01 29.6 9.1 32 400-431 27-58 (421)
173 2efl_A Formin-binding protein 21.5 5.5E+02 0.019 24.7 10.7 79 379-460 172-250 (305)
174 2v4h_A NF-kappa-B essential mo 21.2 3E+02 0.01 25.9 7.7 7 356-362 12-18 (110)
175 3u06_A Protein claret segregat 20.9 2.8E+02 0.0097 29.9 8.7 32 404-435 6-37 (412)
176 1nkp_B MAX protein, MYC proto- 20.9 1.6E+02 0.0054 24.9 5.4 38 397-434 43-80 (83)
177 1i6z_A BAG-family molecular ch 20.1 4.2E+02 0.015 25.5 8.7 58 403-460 23-82 (135)
178 2b5u_A Colicin E3; high resolu 20.1 7.7E+02 0.026 28.4 12.0 29 404-432 317-345 (551)
No 1
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.90 E-value=3.8e-24 Score=202.07 Aligned_cols=144 Identities=21% Similarity=0.368 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCC
Q psy834 434 VKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQE 513 (926)
Q Consensus 434 LDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeED 513 (926)
+|++|+++|++||++|+.+|.++|+.|+ .||++.|.+ ++++|
T Consensus 1 ~~~~~~~~f~~~f~~i~~~f~~~f~~L~-------------------------------------~~g~~~l~l-~~~~~ 42 (173)
T 3kta_B 1 MEKEKKNVFMRTFEAISRNFSEIFAKLS-------------------------------------PGGSARLIL-ENPED 42 (173)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHS-------------------------------------TTCEEEEEE-SCSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhC-------------------------------------CCCEEEEEe-eCCCC
Confidence 5789999999999999999999999985 488999999 77899
Q ss_pred ccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 514 PYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSR 593 (926)
Q Consensus 514 PFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~ 593 (926)
||..||.|.|.|+|+..+.+..||||||+++|||++||++.++| +||+.+ ||.++.|
T Consensus 43 ~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~-----~~~llL----------DEp~a~L-------- 99 (173)
T 3kta_B 43 PFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKP-----APFYLF----------DEIDAHL-------- 99 (173)
T ss_dssp GGGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSC-----CSEEEE----------ESTTTTC--------
T ss_pred ccccCceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCC-----CCEEEE----------CCCccCC--------
Confidence 99999999999999999999999999999999999999999999 999999 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCC
Q psy834 594 VNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGS 666 (926)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~ 666 (926)
|.. |..++ +++|.+++.. +-++| +|+..++..+|+++||+| +.|+
T Consensus 100 ----------------D~~--~~~~~-------~~~l~~~~~~--~~~ivith~~~~~~~ad~i~~v~~-~~g~ 145 (173)
T 3kta_B 100 ----------------DDA--NVKRV-------ADLIKESSKE--SQFIVITLRDVMMANADKIIGVSM-RDGV 145 (173)
T ss_dssp ----------------CHH--HHHHH-------HHHHHHHTTT--SEEEEECSCHHHHTTCSEEEEEEE-ETTE
T ss_pred ----------------CHH--HHHHH-------HHHHHHhccC--CEEEEEEecHHHHHhCCEEEEEEe-cCCE
Confidence 887 88898 6788888754 34555 999999999999999999 6675
No 2
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.85 E-value=4.1e-22 Score=205.24 Aligned_cols=194 Identities=24% Similarity=0.358 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCC
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWP 476 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP 476 (926)
.+|+++|+++.+++.++..+++++++....+.+.|++|++++.+.|+.+|+.|+.+|.++|+.|+.+...|+
T Consensus 224 ~~a~ee~e~l~e~l~~l~~~l~~~r~~~~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-------- 295 (430)
T 1w1w_A 224 GPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNV-------- 295 (430)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc--------
Confidence 478999999999999999999999999999999999999999999999999999999999999873211110
Q ss_pred CcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhccc
Q psy834 477 KKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLV 556 (926)
Q Consensus 477 ~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcD 556 (926)
.+ .||.+.|.+ .++.++|..|+.|.+.||++.++.+..||||||+++|||++||++.+.
T Consensus 296 -------------~~-------~~g~~~l~~-~d~~~~~~~g~~~~~~~~~~~~~~~~~lS~Gq~~~~~la~~la~~~~~ 354 (430)
T 1w1w_A 296 -------------EL-------AGGNASLTI-EDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQ 354 (430)
T ss_dssp ------------------------CEEEEC-------------CEEEECTTCCCCCGGGSCHHHHHHHHHHHHHHHHTSS
T ss_pred -------------cC-------CCceEEEEe-cCCCCcccCceEEEEECCCccccccccCCcchHHHHHHHHHHHHhcCC
Confidence 11 388999988 566789999999999999999999999999999999999999999998
Q ss_pred cCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccC
Q psy834 557 VRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSS 636 (926)
Q Consensus 557 P~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~ 636 (926)
| .||+.+ ||+++.| |.. +..++ ++.|.++...
T Consensus 355 ~-----~~~lll----------DEp~~~L------------------------D~~--~~~~l-------~~~l~~~~~~ 386 (430)
T 1w1w_A 355 P-----SPFFVL----------DEVDAAL------------------------DIT--NVQRI-------AAYIRRHRNP 386 (430)
T ss_dssp C-----CSEEEE----------SSTTTTC------------------------CHH--HHHHH-------HHHHHHHCBT
T ss_pred C-----CCEEEe----------CCCcccC------------------------CHH--HHHHH-------HHHHHHHhcC
Confidence 9 999999 9999999 877 88888 6677777654
Q ss_pred CCceeEeecChhhHHhhhhhcceeee-cCCCC
Q psy834 637 PNTRSRVQSSPTTRSRVQSSLTIQSA-EQGSP 667 (926)
Q Consensus 637 ~~tr~~v~~~~~t~sr~~~~~~v~~a-E~G~~ 667 (926)
..+=++|+|++.++..+|++++|+|. |.|+-
T Consensus 387 ~~~~ii~th~~~~~~~~d~~~~~~~~~~~~~s 418 (430)
T 1w1w_A 387 DLQFIVISLKNTMFEKSDALVGVYRQQQENSS 418 (430)
T ss_dssp TBEEEEECSCHHHHTTCSEEEEEEEETTTTEE
T ss_pred CCEEEEEECCHHHHHhCCEEEEEEEeCCCCee
Confidence 33334449999999999999999998 56753
No 3
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.63 E-value=3.3e-08 Score=98.86 Aligned_cols=134 Identities=21% Similarity=0.264 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEE
Q psy834 444 NMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSC 523 (926)
Q Consensus 444 kTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISV 523 (926)
..|+.|.++|..+|+.+. .||.+.+.+.....+.+..|+.+.+
T Consensus 165 ~~y~rv~e~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~l~~g~~~~~ 207 (322)
T 1e69_A 165 GSYQRVNESFNRFISLLF-------------------------------------FGGEGRLNIVSEAKSILDAGFEISI 207 (322)
T ss_dssp --CHHHHHHHHHHHHHHH-------------------------------------TSCEEEC--------------CCEE
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------------------CCceEEEEeeccccccccCCeEEEE
Confidence 457788888888888753 1333444331111222334677777
Q ss_pred eCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 524 TPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRAN 603 (926)
Q Consensus 524 SPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~ 603 (926)
.++++....+..||||||.+++||..||+..+.+ .||+.+ ||..+-|
T Consensus 208 ~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~-----~~~lll----------DEp~~~L------------------ 254 (322)
T 1e69_A 208 RKPGRRDQKLSLLSGGEKALVGLALLFALMEIKP-----SPFYVL----------DEVDSPL------------------ 254 (322)
T ss_dssp ECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSC-----CSEEEE----------ESCCSSC------------------
T ss_pred ecCccccCchhhCCHHHHHHHHHHHHHHHhccCC-----CCEEEE----------eCCCCCC------------------
Confidence 7777777788999999999999999999887777 799999 9988888
Q ss_pred CCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeec
Q psy834 604 PNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAE 663 (926)
Q Consensus 604 ~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE 663 (926)
|.. +..++ .+.|.++.. ..|=++|+|++..+.-.|+..+|.|..
T Consensus 255 ------D~~--~~~~l-------~~~l~~~~~-~~~vi~~tH~~~~~~~~d~~~~v~~~~ 298 (322)
T 1e69_A 255 ------DDY--NAERF-------KRLLKENSK-HTQFIVITHNKIVMEAADLLHGVTMVN 298 (322)
T ss_dssp ------CHH--HHHHH-------HHHHHHHTT-TSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred ------CHH--HHHHH-------HHHHHHhcC-CCeEEEEECCHHHHhhCceEEEEEEeC
Confidence 655 66777 567777743 334455599987777788888898864
No 4
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.43 E-value=6e-06 Score=87.96 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=70.3
Q ss_pred ceEEEEeC-CCCcccccccC-chhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 518 GMNFSCTP-QGRSYVGIQHL-SGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN 595 (926)
Q Consensus 518 GVeISVSP-PGKr~QsIQQL-SGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~ 595 (926)
.|.|.+.. +|...+.+..| |||||++++||..++. +|. . |+..+ ||.++-+
T Consensus 378 ~v~~~~~~~~~~~~~~~~~l~SgG~~qrv~la~~l~~---~~~--~--~~lil----------DEp~~gl---------- 430 (517)
T 4ad8_A 378 DVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVL---GAD--T--PSVVF----------DEVDAGI---------- 430 (517)
T ss_dssp EEEEEEESSTTSCCCBSSSSSCSSHHHHHHHHHHHHH---CCC--S--SEEEE----------CSCSSSC----------
T ss_pred eeeeeccCCCCCCcccHHhcCCHHHHHHHHHHHHHHh---CCC--C--CEEEE----------eCCcCCC----------
Confidence 45565555 56678899998 9999999999995553 340 1 78999 9988888
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeee
Q psy834 596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSA 662 (926)
Q Consensus 596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~a 662 (926)
|.. +...+ .+.|.+++. ..|=.+|||.+-.....|+.+.|...
T Consensus 431 --------------d~~--~~~~i-------~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 431 --------------GGA--AAIAV-------AEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp --------------CTH--HHHHH-------HHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred --------------CHH--HHHHH-------HHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 655 56666 567888876 45545559999999999999887654
No 5
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.94 E-value=5.3e-05 Score=77.42 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=62.1
Q ss_pred eEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhc---cc-cCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 519 MNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWK---LV-VRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRV 594 (926)
Q Consensus 519 VeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQK---cD-P~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~ 594 (926)
+.|.+..+++. ..+..||||||.+++|||.+|+-+ .+ | |+..+ ||+.+-+
T Consensus 265 ~~~~~~~~~~~-~~~~~lS~G~~~~~~lal~la~a~~l~~~~~------~~lll----------DEp~~~L--------- 318 (371)
T 3auy_A 265 FEVRVHAPNGV-LTIDNLSGGEQIAVALSLRLAIANALIGNRV------ECIIL----------DEPTVYL--------- 318 (371)
T ss_dssp CCEEEEETTEE-ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCC------SEEEE----------ESTTTTC---------
T ss_pred eeEEEEcCCCc-cchHhcCHHHHHHHHHHHHHHHHHHHhcCCC------CeEEE----------eCCCCcC---------
Confidence 56666665543 367789999999999998877643 35 5 89999 9988888
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee
Q psy834 595 NPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ 660 (926)
Q Consensus 595 ~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~ 660 (926)
|.. ....+ .+.|.++... .+=++|+|.+-...-.|+.+-|.
T Consensus 319 ---------------D~~--~~~~l-------~~~l~~~~~~-~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 319 ---------------DEN--RRAKL-------AEIFRKVKSI-PQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp ---------------CHH--HHHHH-------HHHHHHCCSC-SEEEEEESCGGGGGGCSEEEEEE
T ss_pred ---------------CHH--HHHHH-------HHHHHHhccC-CeEEEEEChHHHHhhCCEEEEEE
Confidence 544 44444 4456665433 45566699987666667766553
No 6
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.79 E-value=0.00016 Score=73.28 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=63.8
Q ss_pred eEEEEeCC-CCcccccccC-chhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 519 MNFSCTPQ-GRSYVGIQHL-SGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNP 596 (926)
Q Consensus 519 VeISVSPP-GKr~QsIQQL-SGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~ 596 (926)
+.+.+... +...+.+..| |||||++++||+.++- +| . .|+..+ ||+++=|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~---~~--~--~~~LlL----------DEpt~~L----------- 328 (415)
T 4aby_A 277 VLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVL---GA--D--TPSVVF----------DEVDAGI----------- 328 (415)
T ss_dssp EEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHH---CC--S--SSEEEE----------SSTTTTC-----------
T ss_pred EEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHh---CC--C--CCEEEE----------ECCCCCC-----------
Confidence 34455543 3345666666 9999999999996553 44 1 189999 9988888
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 597 NPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 597 ~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.. ....+ .+.|.+++ ..-|=++|||.+-..+.+|+.+-|
T Consensus 329 -------------D~~--~~~~l-------~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 329 -------------GGA--AAIAV-------AEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp -------------CHH--HHHHH-------HHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEE
T ss_pred -------------CHH--HHHHH-------HHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEE
Confidence 544 55566 66778887 345666779999888888887765
No 7
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.72 E-value=2.9e-05 Score=78.45 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=59.1
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHhc--cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 527 GRSYVGIQHLSGGERTLAALAMIFTIWK--LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANP 604 (926)
Q Consensus 527 GKr~QsIQQLSGGEKSLVALALIFAIQK--cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~ 604 (926)
....+.+..||||||.+++||+.+|+-+ +.. .||..+ ||..+-|
T Consensus 240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~-----p~~lll----------DEp~~~L------------------- 285 (339)
T 3qkt_A 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGE-----ISLLIL----------DEPTPYL------------------- 285 (339)
T ss_dssp TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTT-----TCEEEE----------ECCCTTC-------------------
T ss_pred ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCC-----CCEEEE----------ECCCCCC-------------------
Confidence 3456788999999999998876655532 222 488888 7755555
Q ss_pred CCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeee
Q psy834 605 NPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSA 662 (926)
Q Consensus 605 ~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~a 662 (926)
|.. ....+ .+.|.++.....|=++|+|++-.+..+|+.+-+.+.
T Consensus 286 -----D~~--~~~~l-------~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~~~ 329 (339)
T 3qkt_A 286 -----DEE--RRRKL-------ITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE 329 (339)
T ss_dssp -----CHH--HHHHH-------HHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEE
T ss_pred -----CHH--HHHHH-------HHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEEec
Confidence 333 33333 455666655444556669998888888888877653
No 8
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.50 E-value=0.00015 Score=67.18 Aligned_cols=94 Identities=14% Similarity=0.055 Sum_probs=60.4
Q ss_pred ceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHh--ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 518 GMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIW--KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN 595 (926)
Q Consensus 518 GVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQ--KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~ 595 (926)
|+.+.+... ...+.+..||||||.+++||+.|||- .+.. .++..+ ||-.+-+
T Consensus 41 ~~~l~~~~~-~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~-----p~lllL----------DEPt~~L---------- 94 (148)
T 1f2t_B 41 KVRLFVVWE-GKERPLTFLSGGERIALGLAFRLAMSLYLAGE-----ISLLIL----------DEPTPYL---------- 94 (148)
T ss_dssp SEEEEEEET-TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSS-----CSEEEE----------ESCSCTT----------
T ss_pred ceEEEeccc-cccCChhHCCHHHHHHHHHHhhhHHHHHHcCC-----CCEEEE----------ECCCccC----------
Confidence 566665432 23467889999999999999877762 2233 388888 7755555
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee
Q psy834 596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ 660 (926)
Q Consensus 596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~ 660 (926)
|.. +...+ .+.|.++.....|=.+|+|+......+|+.+-+.
T Consensus 95 --------------D~~--~~~~l-------~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 95 --------------DEE--RRRKL-------ITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 136 (148)
T ss_dssp --------------CHH--HHHHH-------HHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred --------------CHH--HHHHH-------HHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEE
Confidence 433 44445 5566666554455555699986555567665553
No 9
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.26 E-value=0.0067 Score=62.59 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=57.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhc---cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWK---LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN 607 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQK---cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~ 607 (926)
+.+..||||||.+++||+.+++-+ .+| ++..+ ||--+-|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p------~~lll----------DEpt~~L---------------------- 316 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRL------DAFFI----------DEGFSSL---------------------- 316 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTC------CEEEE----------ESCCTTS----------------------
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCC------CEEEE----------eCCCccC----------------------
Confidence 678899999999999999888533 355 78888 7755544
Q ss_pred CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.. ....+ .+.|.++.....|=.+|+|+.-.+..+|+.+-+
T Consensus 317 --D~~--~~~~~-------~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l 357 (365)
T 3qf7_A 317 --DTE--NKEKI-------ASVLKELERLNKVIVFITHDREFSEAFDRKLRI 357 (365)
T ss_dssp --CHH--HHHHH-------HHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEE
T ss_pred --CHH--HHHHH-------HHHHHHHHhCCCEEEEEecchHHHHhCCEEEEE
Confidence 433 44444 566778877666766779998777667765433
No 10
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.63 E-value=0.0076 Score=58.70 Aligned_cols=75 Identities=19% Similarity=0.100 Sum_probs=54.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||+++|||..|+. +| +|..+ ||--+-+ |.
T Consensus 136 ~~~~LSgGq~qrv~lAral~~---~p------~lllL----------DEPts~L------------------------D~ 172 (243)
T 1mv5_A 136 RGVKISGGQRQRLAIARAFLR---NP------KILML----------DEATASL------------------------DS 172 (243)
T ss_dssp TSBCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ECCSCSS------------------------CS
T ss_pred CcCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC------------------------CH
Confidence 457899999999999999987 67 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +..++ .+.|.++. ..-|=.+|+|+.-....+|+.+-+
T Consensus 173 ~--~~~~i-------~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l 210 (243)
T 1mv5_A 173 E--SESMV-------QKALDSLM-KGRTTLVIAHRLSTIVDADKIYFI 210 (243)
T ss_dssp S--SCCHH-------HHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEE
T ss_pred H--HHHHH-------HHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEE
Confidence 4 44555 55677776 445666669998776677876644
No 11
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.28 E-value=0.0059 Score=60.42 Aligned_cols=75 Identities=19% Similarity=0.101 Sum_probs=54.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
....||||||+++|||..|+. +| +|..+ ||--+-+ |.
T Consensus 152 ~~~~LSgGqkqRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~ 188 (260)
T 2ghi_A 152 KGMKLSGGERQRIAIARCLLK---DP------KIVIF----------DEATSSL------------------------DS 188 (260)
T ss_dssp SSBCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ECCCCTT------------------------CH
T ss_pred CcCcCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CH
Confidence 356999999999999999986 67 88888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +...+ .+.|.++.. ..|-.+|+|++-....+|+.+-+
T Consensus 189 ~--~~~~i-------~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~l 226 (260)
T 2ghi_A 189 K--TEYLF-------QKAVEDLRK-NRTLIIIAHRLSTISSAESIILL 226 (260)
T ss_dssp H--HHHHH-------HHHHHHHTT-TSEEEEECSSGGGSTTCSEEEEE
T ss_pred H--HHHHH-------HHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEE
Confidence 4 44555 567777754 45666669998877677776544
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.24 E-value=0.004 Score=60.62 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=54.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||+++|||-.|+. +| +|..+ ||--+-| |
T Consensus 141 ~~~~~LSgGq~QRv~iAral~~---~p------~llll----------DEPts~L------------------------D 177 (235)
T 3tif_A 141 HKPNQLSGGQQQRVAIARALAN---NP------PIILA----------DQPTWAL------------------------D 177 (235)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------C
T ss_pred CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------C
Confidence 3567999999999999999986 67 78888 7765555 5
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~ 657 (926)
.. +...+ .+.|.++... .-|=.+|||+.-....+|+.+
T Consensus 178 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~ 216 (235)
T 3tif_A 178 SK--TGEKI-------MQLLKKLNEEDGKTVVVVTHDINVARFGERII 216 (235)
T ss_dssp HH--HHHHH-------HHHHHHHHHHHCCEEEEECSCHHHHTTSSEEE
T ss_pred HH--HHHHH-------HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEE
Confidence 44 55555 6677887654 456566699987554556554
No 13
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.10 E-value=0.0077 Score=59.18 Aligned_cols=75 Identities=13% Similarity=0.058 Sum_probs=54.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||+++|||..|+. +| +|..+ ||-.+-+ |.
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~---~p------~lllL----------DEPts~L------------------------D~ 178 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVN---NP------KILIF----------DEATSAL------------------------DY 178 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTT---CC------SEEEE----------CCCCSCC------------------------CH
T ss_pred CCCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 457999999999999999986 66 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +...+ .+.|.++. ...|=.+|+|+.-....+|+.+-+
T Consensus 179 ~--~~~~i-------~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l 216 (247)
T 2ff7_A 179 E--SEHVI-------MRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVM 216 (247)
T ss_dssp H--HHHHH-------HHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEE
T ss_pred H--HHHHH-------HHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEE
Confidence 4 55555 56777774 345555669998877677776544
No 14
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.89 E-value=0.094 Score=54.94 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=31.3
Q ss_pred cccc-cCchhHHHHHHHHHHHHHhc------cccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQ-HLSGGERTLAALAMIFTIWK------LVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 531 QsIQ-QLSGGEKSLVALALIFAIQK------cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
+.+. .||||||..++||+.+|-.. .+| ||..+ ||+.+-|
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p------~iLLL----------DEp~s~L 305 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGED------PVLLL----------DDFTAEL 305 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSC------CEEEE----------CCGGGCC
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCC------CEEEE----------eCccccC
Confidence 4555 89999999999999999311 345 89999 8888888
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.80 E-value=0.012 Score=57.47 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=53.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||+++|||..|+. +| +|..+ ||-.+-+ |.
T Consensus 136 ~~~~LSgGq~qrv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~ 172 (240)
T 1ji0_A 136 LGGTLSGGEQQMLAIGRALMS---RP------KLLMM----------DEPSLGL------------------------AP 172 (240)
T ss_dssp BSSSSCHHHHHHHHHHHHHTT---CC------SEEEE----------ECTTTTC------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------CH
Confidence 456899999999999998875 67 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+|+|+.-.. .-+|+.+-+
T Consensus 173 ~--~~~~l-------~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l 212 (240)
T 1ji0_A 173 I--LVSEV-------FEVIQKINQEGTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp H--HHHHH-------HHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4 55555 567778765555656669998544 446776544
No 16
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.75 E-value=0.011 Score=59.09 Aligned_cols=76 Identities=22% Similarity=0.141 Sum_probs=54.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||+++|||..|+. +| +|..+ ||-.+-| |.
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~ 189 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIR---KP------RLLIL----------DNATSAL------------------------DA 189 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred CcCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCccCC------------------------CH
Confidence 467899999999999999886 66 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+|+|+.-....+|+.+-+
T Consensus 190 ~--~~~~i-------~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l 229 (271)
T 2ixe_A 190 G--NQLRV-------QRLLYESPEWASRTVLLITQQLSLAERAHHILFL 229 (271)
T ss_dssp H--HHHHH-------HHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence 4 44555 5667777543 44555569998776667776544
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.70 E-value=0.0075 Score=58.21 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=51.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||+++|||..|+. +| +|..+ ||--+-+ |.
T Consensus 137 ~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~ 173 (224)
T 2pcj_A 137 KPYELSGGEQQRVAIARALAN---EP------ILLFA----------DEPTGNL------------------------DS 173 (224)
T ss_dssp CGGGSCHHHHHHHHHHHHTTT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCCC------------------------CH
Confidence 456999999999999998875 66 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~ 657 (926)
. +...+ .+.|.++....-|=.+|+|+.-...-+|+.+
T Consensus 174 ~--~~~~~-------~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~ 210 (224)
T 2pcj_A 174 A--NTKRV-------MDIFLKINEGGTSIVMVTHERELAELTHRTL 210 (224)
T ss_dssp H--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHTTSSEEE
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHhCCEEE
Confidence 4 44555 5678888766455555599865543345543
No 18
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.63 E-value=0.0087 Score=58.64 Aligned_cols=75 Identities=8% Similarity=0.077 Sum_probs=49.4
Q ss_pred ccc-CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQH-LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 533 IQQ-LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
+.. ||||||+++|||..|+. +| +|..+ ||-.+-+ |.
T Consensus 140 ~~~~LSgGqkQrv~iAraL~~---~p------~lllL----------DEPts~L------------------------D~ 176 (250)
T 2d2e_A 140 LNEGFSGGEKKRNEILQLLVL---EP------TYAVL----------DETDSGL------------------------DI 176 (250)
T ss_dssp TTCC----HHHHHHHHHHHHH---CC------SEEEE----------ECGGGTT------------------------CH
T ss_pred cccCCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence 446 99999999999999986 67 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh--hhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV--QSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~--~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+|+|+.-...++ |+.+-+
T Consensus 177 ~--~~~~l-------~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l 217 (250)
T 2d2e_A 177 D--ALKVV-------ARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM 217 (250)
T ss_dssp H--HHHHH-------HHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence 4 55555 566777765545656669997766663 665543
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.50 E-value=0.011 Score=58.61 Aligned_cols=76 Identities=13% Similarity=-0.033 Sum_probs=54.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||++++||..|+. +| +|..+ ||--+-+ |.
T Consensus 143 ~~~~LSgGq~qRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~ 179 (256)
T 1vpl_A 143 RVSTYSKGMVRKLLIARALMV---NP------RLAIL----------DEPTSGL------------------------DV 179 (256)
T ss_dssp BGGGCCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccc------------------------CH
Confidence 467999999999999998886 67 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+|+|..-...+ +|+.+-+
T Consensus 180 ~--~~~~l-------~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l 219 (256)
T 1vpl_A 180 L--NAREV-------RKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 219 (256)
T ss_dssp H--HHHHH-------HHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence 4 45555 56778887655555556999877666 5765543
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.42 E-value=0.01 Score=58.84 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=54.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||+++|||..|+. +| +|..+ ||-.+-+ |.
T Consensus 135 ~~~~LSgGq~qRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~ 171 (266)
T 2yz2_A 135 VPFFLSGGEKRRVAIASVIVH---EP------DILIL----------DEPLVGL------------------------DR 171 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCccccC------------------------CH
Confidence 347899999999999999887 67 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++.....|=.+|+|+.-...+ +|+.+-+
T Consensus 172 ~--~~~~l-------~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l 211 (266)
T 2yz2_A 172 E--GKTDL-------LRIVEKWKTLGKTVILISHDIETVINHVDRVVVL 211 (266)
T ss_dssp H--HHHHH-------HHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 45555 56677876554555556999877665 5765543
No 21
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.31 E-value=0.017 Score=59.36 Aligned_cols=74 Identities=23% Similarity=0.173 Sum_probs=54.4
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||+++|||-.|+- +| +|..+ ||--+-+ |..
T Consensus 188 g~~LSGGqrQRvaiARAL~~---~p------~iLlL----------DEPts~L------------------------D~~ 224 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILK---AP------GIILL----------DEATSAL------------------------DTS 224 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ECCSSCC------------------------CHH
T ss_pred cCCCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccC------------------------CHH
Confidence 45899999999999998876 66 88888 7654444 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.++ .+.|.++.. ..|-.+|+|..-+...+|+.+-+
T Consensus 225 --~~~~i-------~~~l~~l~~-~~Tvi~itH~l~~~~~aD~i~vl 261 (306)
T 3nh6_A 225 --NERAI-------QASLAKVCA-NRTTIVVAHRLSTVVNADQILVI 261 (306)
T ss_dssp --HHHHH-------HHHHHHHHT-TSEEEEECCSHHHHHTCSEEEEE
T ss_pred --HHHHH-------HHHHHHHcC-CCEEEEEEcChHHHHcCCEEEEE
Confidence 33344 455666654 36778889999999889988755
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.29 E-value=0.022 Score=56.32 Aligned_cols=76 Identities=21% Similarity=0.177 Sum_probs=54.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||+++|||..|+. +| +|..+ ||--+-+ |.
T Consensus 125 ~~~~LSgGq~qrv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~ 161 (253)
T 2nq2_C 125 EFTSLSGGQRQLILIARAIAS---EC------KLILL----------DEPTSAL------------------------DL 161 (253)
T ss_dssp BGGGSCHHHHHHHHHHHHHHT---TC------SEEEE----------SSSSTTS------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 467999999999999999987 67 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+|+|+.-...+ +|+.+-+
T Consensus 162 ~--~~~~l-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l 202 (253)
T 2nq2_C 162 A--NQDIV-------LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLL 202 (253)
T ss_dssp H--HHHHH-------HHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4 55555 5677777665 4565556999776544 5765543
No 23
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.26 E-value=0.019 Score=56.91 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=53.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||+++|||..|+. +| +|..+ ||--+-| |.
T Consensus 150 ~~~~LSgGq~qRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~ 186 (262)
T 1b0u_A 150 YPVHLSGGQQQRVSIARALAM---EP------DVLLF----------DEPTSAL------------------------DP 186 (262)
T ss_dssp CGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ESTTTTS------------------------CH
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence 457899999999999999986 67 78888 7755444 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .++|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus 187 ~--~~~~~-------~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (262)
T 1b0u_A 187 E--LVGEV-------LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226 (262)
T ss_dssp H--HHHHH-------HHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 44555 56788887664565566999766554 5665433
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.24 E-value=0.018 Score=57.25 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=52.1
Q ss_pred cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP 614 (926)
Q Consensus 535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 614 (926)
.||||||+++|||..|+. +| +|..+ ||-.+-| |..
T Consensus 164 ~LSgGq~QRv~iAraL~~---~p------~lLlL----------DEPts~L------------------------D~~-- 198 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVL---EP------ELCIL----------DESDSGL------------------------DID-- 198 (267)
T ss_dssp TCCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTTTC------------------------CHH--
T ss_pred CCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCCCC------------------------CHH--
Confidence 599999999999999986 77 78888 7755555 544
Q ss_pred chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhcce
Q psy834 615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSLTI 659 (926)
Q Consensus 615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~~v 659 (926)
+...+ .+.|.++.....|=.+|+|+.-...+ +|+.+-+
T Consensus 199 ~~~~l-------~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 199 ALKVV-------ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp HHHHH-------HHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred HHHHH-------HHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 55555 55677776554555555998766655 4776544
No 25
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.23 E-value=0.022 Score=61.83 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=54.3
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
...||||||+++|||-.|+- +| ||..+ ||--+-+ |..
T Consensus 478 ~~~LSgGq~qr~~iAral~~---~p------~illl----------DEpts~L------------------------D~~ 514 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLR---DA------PVLIL----------DEATSAL------------------------DTE 514 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CHH
Confidence 46899999999999988865 66 89999 7755555 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ .+.|.++.. ..|-.+|+|+.-+...+|+.+-+
T Consensus 515 --~~~~i-------~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l 551 (582)
T 3b5x_A 515 --SERAI-------QAALDELQK-NKTVLVIAHRLSTIEQADEILVV 551 (582)
T ss_pred --HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 33444 556677654 56777779999988888887654
No 26
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.22 E-value=0.011 Score=57.37 Aligned_cols=69 Identities=9% Similarity=0.015 Sum_probs=49.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+..||||||++++||..|+. +| +|..+ ||-.+-+ |.
T Consensus 130 ~~~~LSgGqkqrv~laraL~~---~p------~lllL----------DEPts~L------------------------D~ 166 (214)
T 1sgw_A 130 KLGELSQGTIRRVQLASTLLV---NA------EIYVL----------DDPVVAI------------------------DE 166 (214)
T ss_dssp BGGGSCHHHHHHHHHHHHTTS---CC------SEEEE----------ESTTTTS------------------------CT
T ss_pred ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCCcCC------------------------CH
Confidence 467999999999999998875 66 88899 7766666 54
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR 652 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr 652 (926)
. +...+ .+.|.++.....|=.+|+|++-...+
T Consensus 167 ~--~~~~l-------~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 167 D--SKHKV-------LKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp T--THHHH-------HHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 4 55666 56677776544455566998765444
No 27
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.17 E-value=0.023 Score=61.84 Aligned_cols=74 Identities=16% Similarity=0.060 Sum_probs=54.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||+++|||-.|+- +| ||..+ ||--+-+ |..
T Consensus 481 ~~~LSgGq~qrv~iAral~~---~p------~illl----------DEpts~L------------------------D~~ 517 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLK---NP------KILLL----------DEATSAL------------------------DAE 517 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ECCCSSC------------------------CHH
T ss_pred CCcCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECcccCC------------------------CHH
Confidence 46899999999999998876 66 89999 7755555 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ .+.|.++.. ..|-.+|+|++-+...+|+.+-+
T Consensus 518 --~~~~i-------~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l 554 (595)
T 2yl4_A 518 --NEYLV-------QEALDRLMD-GRTVLVIAHRLSTIKNANMVAVL 554 (595)
T ss_dssp --HHHHH-------HHHHHHHHT-TSEEEEECCCHHHHHHSSEEEEE
T ss_pred --HHHHH-------HHHHHHHhc-CCEEEEEecCHHHHHcCCEEEEE
Confidence 33444 556667655 46777779999998888887654
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.05 E-value=0.016 Score=56.98 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=53.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||+++|||..|+. +| +|..+ ||--+-+ |
T Consensus 149 ~~~~~LSgGqkQrv~iAraL~~---~p------~lllL----------DEPts~L------------------------D 185 (257)
T 1g6h_A 149 RKAGELSGGQMKLVEIGRALMT---NP------KMIVM----------DEPIAGV------------------------A 185 (257)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred CCchhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------C
Confidence 4567999999999999999885 67 78888 7755444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus 186 ~~--~~~~l-------~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 186 PG--LAHDI-------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp HH--HHHHH-------HHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred HH--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 44 44555 56788887665555556998765443 5665443
No 29
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.04 E-value=0.02 Score=57.27 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=53.8
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||+++|||..|+. +| +|..+ ||--+-| |.
T Consensus 156 ~~~~LSgGqkQRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~ 192 (263)
T 2olj_A 156 YPDSLSGGQAQRVAIARALAM---EP------KIMLF----------DEPTSAL------------------------DP 192 (263)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHC---CC------CEEEE----------eCCcccC------------------------CH
Confidence 457999999999999999886 67 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus 193 ~--~~~~~-------~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 193 E--MVGEV-------LSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp H--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 4 44455 56788887664455555999776655 5665443
No 30
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.73 E-value=0.013 Score=59.02 Aligned_cols=77 Identities=13% Similarity=0.020 Sum_probs=53.8
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||+++|||..|+. +| +|..+ ||--+-| |
T Consensus 139 ~~~~~LSgGqkQRv~iAraL~~---~P------~lLlL----------DEPts~L------------------------D 175 (275)
T 3gfo_A 139 KPTHCLSFGQKKRVAIAGVLVM---EP------KVLIL----------DEPTAGL------------------------D 175 (275)
T ss_dssp SBGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ECTTTTC------------------------C
T ss_pred CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------C
Confidence 3456899999999999999986 77 78888 6644444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhc-cCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVS-SSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~-~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .++|.++. ...-|=.+|+|+.-...+ +|+.+-+
T Consensus 176 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 176 PM--GVSEI-------MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp HH--HHHHH-------HHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred HH--HHHHH-------HHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 44 44555 66788876 444565666999766655 6775433
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.58 E-value=0.033 Score=55.15 Aligned_cols=79 Identities=18% Similarity=0.097 Sum_probs=53.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCc----eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRP----LTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN 607 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aP----i~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~ 607 (926)
.+..||||||++++||..|+. +|. -++ |..+ ||-.+-|
T Consensus 123 ~~~~LSgGq~qrv~lAraL~~---~p~---~~~~~~~lllL----------DEPts~L---------------------- 164 (249)
T 2qi9_C 123 STNQLSGGEWQRVRLAAVVLQ---ITP---QANPAGQLLLL----------DEPMNSL---------------------- 164 (249)
T ss_dssp BGGGCCHHHHHHHHHHHHHHH---HCT---TTCTTCCEEEE----------SSTTTTC----------------------
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CCC---cCCCCCeEEEE----------ECCcccC----------------------
Confidence 567999999999999999987 550 011 7778 6655545
Q ss_pred CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
|.. +...+ .+.|.++.....|=.+|+|+.-...+ .|+.+-+
T Consensus 165 --D~~--~~~~l-------~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l 206 (249)
T 2qi9_C 165 --DVA--QQSAL-------DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL 206 (249)
T ss_dssp --CHH--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred --CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 444 55555 56788887654565555999776544 5665543
No 32
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.57 E-value=0.03 Score=61.77 Aligned_cols=78 Identities=22% Similarity=0.092 Sum_probs=57.1
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCc-eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRP-LTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aP-i~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
+.+..||||||++++||-.++. +| .| |..+ ||-.+=|
T Consensus 198 ~~~~~LSGGe~QRv~iArAL~~---~p-----~~~lLlL----------DEPtsgL------------------------ 235 (670)
T 3ux8_A 198 RSAGTLSGGEAQRIRLATQIGS---RL-----TGVLYVL----------DEPSIGL------------------------ 235 (670)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHT---CC-----CSCEEEE----------ECTTTTC------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHhh---CC-----CCCEEEE----------ECCccCC------------------------
Confidence 5678999999999999998876 66 43 7777 6644444
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.. +...+ .++|.++.....|=.+|+|+.-.+..+|+.+-+
T Consensus 236 D~~--~~~~l-------~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l 276 (670)
T 3ux8_A 236 HQR--DNDRL-------IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI 276 (670)
T ss_dssp CGG--GHHHH-------HHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEE
T ss_pred CHH--HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEe
Confidence 444 56666 667888876667767779998877777776533
No 33
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.52 E-value=0.018 Score=63.55 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=57.0
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+...+||||||+++|||-.++..--+| +|..+ ||-.+=| |
T Consensus 539 ~~~~~LSgG~~qrv~iAraL~~~p~~p------~llll----------DEPt~~L------------------------D 578 (670)
T 3ux8_A 539 QPATTLSGGEAQRVKLAAELHRRSNGR------TLYIL----------DEPTTGL------------------------H 578 (670)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHSCCCSC------EEEEE----------ESTTTTC------------------------C
T ss_pred CCchhCCHHHHHHHHHHHHHhhCCCCC------cEEEE----------eCCCCCC------------------------C
Confidence 567899999999999999988633333 58888 6654444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT 658 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~ 658 (926)
.. +...+ .++|.++.....|=.+|+|+.-....+|+.+-
T Consensus 579 ~~--~~~~i-------~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~ 617 (670)
T 3ux8_A 579 VD--DIARL-------LDVLHRLVDNGDTVLVIEHNLDVIKTADYIID 617 (670)
T ss_dssp HH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred HH--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEE
Confidence 44 45555 56788887766677777999887777777653
No 34
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.46 E-value=0.028 Score=56.04 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=53.1
Q ss_pred cccccCchhHHHHHHHHHHHHH-hcc--ccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTI-WKL--VVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN 607 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAI-QKc--DP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~ 607 (926)
+.+.+||||||+++|||..|+. +-+ +| +|..+ ||--+-|
T Consensus 137 ~~~~~LSgGq~QRv~iAraL~~~~~~~~~p------~lLll----------DEPts~L---------------------- 178 (266)
T 4g1u_C 137 RDYRVLSGGEQQRVQLARVLAQLWQPQPTP------RWLFL----------DEPTSAL---------------------- 178 (266)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHHTCCSSCCC------EEEEE----------CCCCSSC----------------------
T ss_pred CCcccCCHHHHHHHHHHHHHhcccccCCCC------CEEEE----------eCccccC----------------------
Confidence 3456899999999999999985 322 44 56666 6644434
Q ss_pred CCCCCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHh-hhhhcce
Q psy834 608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr-~~~~~~v 659 (926)
|.. +...+ .++|.++..... |=.+|+|+.-...+ +|+.+-+
T Consensus 179 --D~~--~~~~i-------~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl 221 (266)
T 4g1u_C 179 --DLY--HQQHT-------LRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL 221 (266)
T ss_dssp --CHH--HHHHH-------HHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred --CHH--HHHHH-------HHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 433 44455 667888876554 55566999776654 6776544
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.46 E-value=0.022 Score=57.30 Aligned_cols=75 Identities=17% Similarity=-0.031 Sum_probs=52.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||+++|||..|+. +| +|..+ ||--+-| |.
T Consensus 158 ~~~~LSgGqkqRv~lAraL~~---~p------~lLlL----------DEPts~L------------------------D~ 194 (279)
T 2ihy_A 158 YIGYLSTGEKQRVMIARALMG---QP------QVLIL----------DEPAAGL------------------------DF 194 (279)
T ss_dssp BGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCcccc------------------------CH
Confidence 467899999999999999886 67 78888 7755555 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCce--eEeecChhhHHh-hhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTR--SRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr--~~v~~~~~t~sr-~~~~~~ 658 (926)
. +...+ .+.|.++....-|= .+|+|+.-...+ +|+.+-
T Consensus 195 ~--~~~~l-------~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 195 I--ARESL-------LSILDSLSDSYPTLAMIYVTHFIEEITANFSKILL 235 (279)
T ss_dssp H--HHHHH-------HHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEE
T ss_pred H--HHHHH-------HHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEE
Confidence 4 44555 56777776654565 566998765433 566543
No 36
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.42 E-value=0.032 Score=61.06 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=54.0
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||+++|||-.|+- +| +|..+ ||--+-+ |..
T Consensus 489 g~~LSgGq~Qrv~iAral~~---~p------~illl----------DEpts~L------------------------D~~ 525 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLA---NP------KILIL----------DEATSNV------------------------DTK 525 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHT---CC------SEEEE----------CCCCTTC------------------------CHH
T ss_pred CCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCccCC------------------------CHH
Confidence 35899999999999988774 66 89999 7755444 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-... .+.|.++. ...|-.+|+|+.-+...+|+.+-+
T Consensus 526 --~~~~i-------~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l 562 (598)
T 3qf4_B 526 --TEKSI-------QAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVL 562 (598)
T ss_dssp --HHHHH-------HHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEE
T ss_pred --HHHHH-------HHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEE
Confidence 33333 44566664 357888889999999889987755
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.41 E-value=0.034 Score=53.82 Aligned_cols=75 Identities=17% Similarity=0.025 Sum_probs=49.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
...||||||++++||..|+. +| +|..+ ||--+-+ |..
T Consensus 128 ~~~LSgGqkqrv~lAral~~---~p------~lllL----------DEPts~L------------------------D~~ 164 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYK---DA------DLYLL----------DSPFGYL------------------------DVL 164 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTS------------------------CHH
T ss_pred CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECcccCC------------------------CHH
Confidence 56999999999999998885 66 78888 7755555 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+..++.+. ++.++.. ..|-.+|+|+.-....+|+.+-+
T Consensus 165 --~~~~i~~~------l~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l 202 (229)
T 2pze_A 165 --TEKEIFES------CVCKLMA-NKTRILVTSKMEHLKKADKILIL 202 (229)
T ss_dssp --HHHHHHHH------CCCCCTT-TSEEEEECCCHHHHHHCSEEEEE
T ss_pred --HHHHHHHH------HHHHhhC-CCEEEEEcCChHHHHhCCEEEEE
Confidence 44444211 1233322 34656669998776667776544
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.37 E-value=0.029 Score=54.69 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=28.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
.+..||||||+++|||..|+. +| +|..+ ||--+-+
T Consensus 124 ~~~~LSgGqkqRv~lAraL~~---~p------~lllL----------DEPts~L 158 (237)
T 2cbz_A 124 KGVNLSGGQKQRVSLARAVYS---NA------DIYLF----------DDPLSAV 158 (237)
T ss_dssp TSBCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTTTS
T ss_pred CCCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccc
Confidence 457999999999999999986 67 88888 7755555
No 39
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.35 E-value=0.025 Score=55.59 Aligned_cols=76 Identities=20% Similarity=0.079 Sum_probs=51.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||+++|||..|+. +| ++..+ ||--+-+ |.
T Consensus 123 ~~~~LSgGqkqRv~lAral~~---~p------~lllL----------DEPts~L------------------------D~ 159 (240)
T 2onk_A 123 KPARLSGGERQRVALARALVI---QP------RLLLL----------DEPLSAV------------------------DL 159 (240)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT---CC------SSBEE----------ESTTSSC------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 346999999999999999886 67 78888 7644444 44
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
. +...+ .+.|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus 160 ~--~~~~~-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l 200 (240)
T 2onk_A 160 K--TKGVL-------MEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200 (240)
T ss_dssp H--HHHHH-------HHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 44455 5667777653 4565666999765444 5765443
No 40
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.03 E-value=0.036 Score=55.38 Aligned_cols=74 Identities=11% Similarity=0.022 Sum_probs=50.2
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||+++|||..|+. +| +|..+ ||-.+-+ |
T Consensus 124 ~~~~~LSgGqkqRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D 160 (263)
T 2pjz_A 124 RKLYKLSAGQSVLVRTSLALAS---QP------EIVGL----------DEPFENV------------------------D 160 (263)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ECTTTTC------------------------C
T ss_pred CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccc------------------------C
Confidence 3467999999999999999886 67 78888 7754444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhh-hhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQ-SSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~-~~~~v 659 (926)
.. +...+ .+.|.++.. |=.+|+|+.-... -+| +.+-+
T Consensus 161 ~~--~~~~l-------~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l 199 (263)
T 2pjz_A 161 AA--RRHVI-------SRYIKEYGK---EGILVTHELDMLNLYKEYKAYFL 199 (263)
T ss_dssp HH--HHHHH-------HHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEE
T ss_pred HH--HHHHH-------HHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEE
Confidence 44 44445 455666654 5555699976544 356 55433
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.87 E-value=0.034 Score=60.47 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=54.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
...||||||+++|||-.|+- +| ||..+ ||--+-+ |..
T Consensus 478 ~~~LSgGq~qrl~iAral~~---~p------~illl----------DEpts~L------------------------D~~ 514 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLR---DS------PILIL----------DEATSAL------------------------DTE 514 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHH---CC------SEEEE----------ETTTSSC------------------------CHH
T ss_pred CCCCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECccccC------------------------CHH
Confidence 46899999999999998875 66 89999 7755555 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-... .+.|.++.. ..|-.+|+|++-+...+|+.+-+
T Consensus 515 --~~~~i-------~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l 551 (582)
T 3b60_A 515 --SERAI-------QAALDELQK-NRTSLVIAHRLSTIEQADEIVVV 551 (582)
T ss_dssp --HHHHH-------HHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEE
T ss_pred --HHHHH-------HHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEE
Confidence 33344 456677654 56777779999888888886644
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.74 E-value=0.036 Score=60.65 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
..+||||||+++|||-.++- +| ||..+ ||--+-+ |..
T Consensus 477 ~~~LSgGqrQrv~lARal~~---~p------~illl----------DEpts~L------------------------D~~ 513 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVK---KP------KVLIL----------DDCTSSV------------------------DPI 513 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHT---CC------SEEEE----------ESCCTTS------------------------CHH
T ss_pred CCCcCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------CHH
Confidence 46899999999999987764 66 89999 7755444 333
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-.+. .+.|.++. ...|-.+|+|+.-+...+|+.+-+
T Consensus 514 --~~~~i-------~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl 550 (587)
T 3qf4_A 514 --TEKRI-------LDGLKRYT-KGCTTFIITQKIPTALLADKILVL 550 (587)
T ss_dssp --HHHHH-------HHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEE
T ss_pred --HHHHH-------HHHHHHhC-CCCEEEEEecChHHHHhCCEEEEE
Confidence 33333 33455553 357888889999998888887755
No 43
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=92.28 E-value=0.032 Score=65.22 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=59.3
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+....||||||++++||-.++-...+| .|+.+ ||--.=| |
T Consensus 801 q~~~~LSGGErQRV~LAraL~~~p~~p------~LLIL----------DEPTsGL------------------------D 840 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELRKRDTGR------TLYIL----------DEPTVGL------------------------H 840 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTSCCCSS------EEEEE----------ESTTTTC------------------------C
T ss_pred CCccCCCHHHHHHHHHHHHHhhCCCCC------CEEEE----------ECCCCCC------------------------C
Confidence 567899999999999999887533333 68888 6643333 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
-+ +...+ .+.|.++.....|=.+|+|+.-.....|+.+-+
T Consensus 841 ~~--~~~~L-------~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivL 880 (916)
T 3pih_A 841 FE--DVRKL-------VEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDL 880 (916)
T ss_dssp HH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred HH--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEe
Confidence 34 55566 667888877788877789999888888887644
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.21 E-value=0.049 Score=59.23 Aligned_cols=75 Identities=23% Similarity=0.175 Sum_probs=54.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
...+||||||+++|||-.++- +| +|..+ ||--+-+ |.
T Consensus 474 ~g~~LSgGq~Qrv~lAral~~---~p------~illl----------DEpts~L------------------------D~ 510 (578)
T 4a82_A 474 RGVKLSGGQKQRLSIARIFLN---NP------PILIL----------DEATSAL------------------------DL 510 (578)
T ss_dssp GGTTSCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred CCCcCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CH
Confidence 346899999999999988875 66 89999 7755555 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
. +-..+ .+.|.++.. ..|-.+|+|+.-+...+|+.+-+
T Consensus 511 ~--~~~~i-------~~~l~~~~~-~~t~i~itH~l~~~~~~d~i~~l 548 (578)
T 4a82_A 511 E--SESII-------QEALDVLSK-DRTTLIVAHRLSTITHADKIVVI 548 (578)
T ss_dssp H--HHHHH-------HHHHHHHTT-TSEEEEECSSGGGTTTCSEEEEE
T ss_pred H--HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHcCCEEEEE
Confidence 3 33344 445666644 46888889999998888887654
No 45
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.94 E-value=0.07 Score=55.69 Aligned_cols=74 Identities=19% Similarity=0.017 Sum_probs=49.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||++||||-.|+. +| +|..+ ||--+-| |.
T Consensus 137 ~~~~LSGGq~QRvalAraL~~---~P------~lLLL----------DEP~s~L------------------------D~ 173 (353)
T 1oxx_K 137 FPRELSGAQQQRVALARALVK---DP------SLLLL----------DEPFSNL------------------------DA 173 (353)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------CG
T ss_pred ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccC------------------------CH
Confidence 356999999999999999887 77 78888 6643333 33
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
. +-..+ .+.|.++... .-|=..|||+.-...+ .|+.+
T Consensus 174 ~--~r~~l-------~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~ 212 (353)
T 1oxx_K 174 R--MRDSA-------RALVKEVQSRLGVTLLVVSHDPADIFAIADRVG 212 (353)
T ss_dssp G--GHHHH-------HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 3 33333 4556666543 4455556999765444 57654
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.81 E-value=0.07 Score=54.12 Aligned_cols=75 Identities=17% Similarity=0.025 Sum_probs=48.9
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
+..||||||++++||..|+. +| +|..+ ||--+-+ |..
T Consensus 157 ~~~LSgGq~QRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~~ 193 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYK---DA------DLYLL----------DSPFGYL------------------------DVL 193 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTC------------------------CHH
T ss_pred cCcCCHHHHHHHHHHHHHHC---CC------CEEEE----------ECCcccC------------------------CHH
Confidence 46899999999999999885 66 78888 7755555 443
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+..++.+. ++.++.. .-|=.+|+|+.-....+|+.+-+
T Consensus 194 --~~~~i~~~------ll~~~~~-~~tviivtHd~~~~~~~d~i~~l 231 (290)
T 2bbs_A 194 --TEKEIFES------CVCKLMA-NKTRILVTSKMEHLKKADKILIL 231 (290)
T ss_dssp --HHHHHHHH------CCCCCTT-TSEEEEECCCHHHHHHSSEEEEE
T ss_pred --HHHHHHHH------HHHHhhC-CCEEEEEecCHHHHHcCCEEEEE
Confidence 44444211 1223322 34555569998777777776543
No 47
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=91.79 E-value=0.08 Score=62.03 Aligned_cols=78 Identities=18% Similarity=0.097 Sum_probs=59.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCc-eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRP-LTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aP-i~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
+.+..||||||++++||-.++- +| .| ++.+ ||=.+-|
T Consensus 460 r~~~~LSGGe~QRv~LAraL~~---~p-----~~~lllL----------DEPT~gL------------------------ 497 (916)
T 3pih_A 460 RSATTLSGGESQRIRLATQIGS---GL-----TGVIYVL----------DEPTIGL------------------------ 497 (916)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHT---TC-----CSCEEEE----------ECTTTTC------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHhh---CC-----CCcEEEE----------ECCccCC------------------------
Confidence 5678999999999999988876 34 32 7777 6644444
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.. +..+. .+.|.++....+|=.+|+|+.-.+...|+.+-+
T Consensus 498 D~~--~~~~l-------~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~l 538 (916)
T 3pih_A 498 HPR--DTERL-------IKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDI 538 (916)
T ss_dssp CGG--GHHHH-------HHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEE
T ss_pred CHH--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence 444 56666 667888888888888889999888888887654
No 48
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.07 E-value=0.053 Score=57.49 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=52.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
...+||||||++||||-.++. +| .|..+ ||--+-| |.
T Consensus 160 ~~~~LSGGqkQRVaIArAL~~---~P------~lLLl----------DEPTs~L------------------------D~ 196 (366)
T 3tui_C 160 YPSNLSGGQKQRVAIARALAS---NP------KVLLC----------DQATSAL------------------------DP 196 (366)
T ss_dssp CTTTSCHHHHHHHHHHHHTTT---CC------SEEEE----------ESTTTTS------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCccC------------------------CH
Confidence 456999999999999998876 77 67788 6644444 43
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
. +...+ .++|.++... .-|=.+|||..-...+ +|+.+-
T Consensus 197 ~--~~~~i-------~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 197 A--TTRSI-------LELLKDINRRLGLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp H--HHHHH-------HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred H--HHHHH-------HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 3 44445 6778888655 4565666999766555 677543
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.90 E-value=0.061 Score=56.20 Aligned_cols=74 Identities=18% Similarity=0.088 Sum_probs=48.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||+++|||-.|+. +| ++..+ ||--+-| |.
T Consensus 124 ~~~~LSgGq~QRvalAraL~~---~P------~lLLL----------DEP~s~L------------------------D~ 160 (348)
T 3d31_A 124 NPLTLSGGEQQRVALARALVT---NP------KILLL----------DEPLSAL------------------------DP 160 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHTTS---CC------SEEEE----------ESSSTTS------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CH
Confidence 456999999999999998886 67 78888 6644333 32
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~ 657 (926)
. +-..+ .+.|.++... .-|=..|||..-. +.-.|+.+
T Consensus 161 ~--~~~~l-------~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~ 199 (348)
T 3d31_A 161 R--TQENA-------REMLSVLHKKNKLTVLHITHDQTEARIMADRIA 199 (348)
T ss_dssp H--HHHHH-------HHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEE
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 2 33333 4567777554 3455555999764 44457654
No 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.89 E-value=0.078 Score=55.80 Aligned_cols=75 Identities=16% Similarity=0.037 Sum_probs=48.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||++||||-.|+. +| ++..+ ||--+-| |.
T Consensus 136 ~~~~LSGGq~QRvalArAL~~---~P------~lLLL----------DEP~s~L------------------------D~ 172 (372)
T 1g29_1 136 KPRELSGGQRQRVALGRAIVR---KP------QVFLM----------DEPLSNL------------------------DA 172 (372)
T ss_dssp CGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ECTTTTS------------------------CH
T ss_pred CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCCccC------------------------CH
Confidence 346999999999999999987 77 67777 6633333 32
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~ 658 (926)
. +-..+ .+.|.++... .-|=..|||..-...+ .|+.+-
T Consensus 173 ~--~r~~l-------~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 173 K--LRVRM-------RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp H--HHHHH-------HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence 2 22333 4456666544 3455556999765444 566543
No 51
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.55 E-value=0.08 Score=55.67 Aligned_cols=74 Identities=16% Similarity=0.032 Sum_probs=48.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||++||||-.|+. +| +|..+ ||--+-| |.
T Consensus 142 ~~~~LSGGq~QRvalArAL~~---~P------~lLLL----------DEP~s~L------------------------D~ 178 (355)
T 1z47_A 142 FPHELSGGQQQRVALARALAP---RP------QVLLF----------DEPFAAI------------------------DT 178 (355)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTCCS------------------------SH
T ss_pred CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence 456999999999999999887 77 67777 6633333 32
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
. +-..+ .+.|.++... .-|=..|||......+ .|+.+
T Consensus 179 ~--~r~~l-------~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~ 217 (355)
T 1z47_A 179 Q--IRREL-------RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVL 217 (355)
T ss_dssp H--HHHHH-------HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEE
T ss_pred H--HHHHH-------HHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEE
Confidence 2 22333 4556666554 3455556999766544 56654
No 52
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.20 E-value=0.093 Score=55.18 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=24.0
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
.+.+||||||++||||-.|+. +| ++..+
T Consensus 130 ~~~~LSgGq~QRvalArAL~~---~P------~lLLL 157 (359)
T 2yyz_A 130 KPTQLSGGQQQRVALARALVK---QP------KVLLF 157 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE
Confidence 356999999999999998886 77 77888
No 53
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.48 E-value=0.08 Score=55.70 Aligned_cols=75 Identities=13% Similarity=-0.002 Sum_probs=48.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR 611 (926)
Q Consensus 532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (926)
.+.+||||||++||||-.|+. +| ++..+ ||--+-| |.
T Consensus 130 ~~~~LSGGq~QRvalArAL~~---~P------~lLLL----------DEP~s~L------------------------D~ 166 (362)
T 2it1_A 130 YPWQLSGGQQQRVAIARALVK---EP------EVLLL----------DEPLSNL------------------------DA 166 (362)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESGGGGS------------------------CH
T ss_pred ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CH
Confidence 446999999999999999886 77 67777 6633333 32
Q ss_pred CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhH-Hhhhhhcc
Q psy834 612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTR-SRVQSSLT 658 (926)
Q Consensus 612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~-sr~~~~~~ 658 (926)
. +-..+ .+.|.++... .-|=..|||..-.. .-.|+.+-
T Consensus 167 ~--~r~~l-------~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 206 (362)
T 2it1_A 167 L--LRLEV-------RAELKRLQKELGITTVYVTHDQAEALAMADRIAV 206 (362)
T ss_dssp H--HHHHH-------HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred H--HHHHH-------HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 2 22333 4566666554 44555569997654 44576543
No 54
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=89.45 E-value=0.16 Score=60.22 Aligned_cols=79 Identities=22% Similarity=0.081 Sum_probs=59.8
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||-.++. +| -..|+++ ||=.+=| |
T Consensus 500 R~~~tLSGGEkQRV~LA~aL~~---~~----~~~llIL----------DEPTagL------------------------d 538 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLATQIGS---RL----TGVLYVL----------DEPSIGL------------------------H 538 (972)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTT---CC----CSCEEEE----------ECTTTTC------------------------C
T ss_pred CccccCCHHHHHHHHHHHHHhh---CC----CCCEEEE----------eCcccCC------------------------C
Confidence 4667999999999999999885 32 0148888 7755555 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
.. ...++ -+.|..+....+|=.+|+|..-.+..+|+.+-+
T Consensus 539 p~--~~~~L-------~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~L 578 (972)
T 2r6f_A 539 QR--DNDRL-------IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI 578 (972)
T ss_dssp GG--GHHHH-------HHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEE
T ss_pred HH--HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence 33 55666 566788888889888889999998888887654
No 55
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.29 E-value=0.09 Score=55.51 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=24.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+.+.+||||||++||||-.|+. +| ++..+
T Consensus 137 r~~~~LSGGq~QRvalArAL~~---~P------~lLLL 165 (372)
T 1v43_A 137 RYPAQLSGGQRQRVAVARAIVV---EP------DVLLM 165 (372)
T ss_dssp SCTTTCCSSCHHHHHHHHHHTT---CC------SEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 3457999999999999998886 77 67888
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.26 E-value=0.15 Score=56.83 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=53.3
Q ss_pred cccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 529 SYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNP 608 (926)
Q Consensus 529 r~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~ 608 (926)
..+.+.+||||||+++|||-.|+. +| .|..+ ||-.+-|
T Consensus 222 ~~~~~~~LSGGekQRvaIAraL~~---~P------~lLlL----------DEPTs~L----------------------- 259 (607)
T 3bk7_A 222 LDRELHQLSGGELQRVAIAAALLR---KA------HFYFF----------DEPSSYL----------------------- 259 (607)
T ss_dssp GGSBGGGCCHHHHHHHHHHHHHHS---CC------SEEEE----------ECTTTTC-----------------------
T ss_pred hCCChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC-----------------------
Confidence 346788999999999999999885 67 78888 7755555
Q ss_pred CCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhc
Q psy834 609 NSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSL 657 (926)
Q Consensus 609 ~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~ 657 (926)
|.. +...+ .+.|.++....-|=.+|+|..-...++ |+.+
T Consensus 260 -D~~--~~~~l-------~~~L~~l~~~g~tvIivsHdl~~~~~~adri~ 299 (607)
T 3bk7_A 260 -DIR--QRLKV-------ARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH 299 (607)
T ss_dssp -CHH--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE
T ss_pred -CHH--HHHHH-------HHHHHHHHhcCCEEEEEecChHHHHhhCCEEE
Confidence 444 44444 556777766545555559987655553 6653
No 57
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=88.43 E-value=0.18 Score=58.70 Aligned_cols=78 Identities=17% Similarity=0.035 Sum_probs=58.5
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
+.+..||||||++++||-.++. +| . -|+++ ||=.+-|
T Consensus 375 r~~~tLSGGe~QRV~LA~aL~~---~p-----~~~llIL----------DEPT~~L------------------------ 412 (842)
T 2vf7_A 375 RSTPTLSPGELQRLRLATQLYS---NL-----FGVVYVL----------DEPSAGL------------------------ 412 (842)
T ss_dssp CBGGGSCHHHHHHHHHHHHTTT---CC-----CSCEEEE----------ECTTTTC------------------------
T ss_pred CCcCcCCHHHHHHHHHHHHHhh---CC-----CCeEEEe----------eCccccC------------------------
Confidence 4567999999999999998885 44 2 38888 7755555
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|.+ .+.++ -+.|..+....+|=.+|+|+.-.+..+|+.+-+
T Consensus 413 d~~--~~~~L-------~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 413 HPA--DTEAL-------LSALENLKRGGNSLFVVEHDLDVIRRADWLVDV 453 (842)
T ss_dssp CGG--GHHHH-------HHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred CHH--HHHHH-------HHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEe
Confidence 444 45566 566778888888888889999888777776544
No 58
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.29 E-value=0.17 Score=53.89 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=24.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+.+.+||||||++||||-.++. +| .+..+
T Consensus 129 r~p~~LSGGqrQRVaiArAL~~---~P------~lLLL 157 (381)
T 3rlf_A 129 RKPKALSGGQRQRVAIGRTLVA---EP------SVFLL 157 (381)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHH---CC------SEEEE
T ss_pred CChhHCCHHHHHHHHHHHHHHc---CC------CEEEE
Confidence 3457999999999999999986 77 67777
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.53 E-value=0.23 Score=54.26 Aligned_cols=75 Identities=19% Similarity=0.060 Sum_probs=51.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||+++|||-.|+. +| .|..+ ||-.+-| |
T Consensus 154 ~~~~~LSgGekQRv~iAraL~~---~P------~lLlL----------DEPTs~L------------------------D 190 (538)
T 1yqt_A 154 REIQHLSGGELQRVAIAAALLR---NA------TFYFF----------DEPSSYL------------------------D 190 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC------------------------C
Confidence 4578999999999999998885 77 78888 7744444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
.. +...+ .+.|.++....-|=.+|+|..--..+ +|+.+
T Consensus 191 ~~--~~~~l-------~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~ 229 (538)
T 1yqt_A 191 IR--QRLNA-------ARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH 229 (538)
T ss_dssp HH--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE
T ss_pred HH--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 33 44444 55677776654555555998665555 36654
No 60
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=87.45 E-value=0.18 Score=59.76 Aligned_cols=79 Identities=22% Similarity=0.102 Sum_probs=59.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||-.++. +| -..|+++ ||=.+=| |
T Consensus 517 r~~~tLSGGEkQRV~LA~aL~~---~~----~~~llIL----------DEPTagL------------------------d 555 (993)
T 2ygr_A 517 RAAATLSGGEAQRIRLATQIGS---GL----VGVLYVL----------DEPSIGL------------------------H 555 (993)
T ss_dssp CBGGGCCHHHHHHHHHHHHHTT---CC----CSCEEEE----------ECTTTTC------------------------C
T ss_pred CCcccCCHHHHHHHHHHHHHhh---CC----CCcEEEE----------eCcccCC------------------------C
Confidence 4677999999999999999885 33 0148888 7755555 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
.. .+.++ -+.|..+....+|=.+|+|..-.+..+|+.+-+
T Consensus 556 p~--~~~~L-------~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~L 595 (993)
T 2ygr_A 556 QR--DNRRL-------IETLTRLRDLGNTLIVVEHDEDTIEHADWIVDI 595 (993)
T ss_dssp HH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEE
T ss_pred HH--HHHHH-------HHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEe
Confidence 33 45566 566788877888888889999988888887544
No 61
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.08 E-value=0.2 Score=52.91 Aligned_cols=29 Identities=31% Similarity=0.182 Sum_probs=24.6
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+.+.+||||||++||||-.++. +| .+..+
T Consensus 134 r~~~~LSGGq~QRValArAL~~---~P------~lLLL 162 (359)
T 3fvq_A 134 RYPHELSGGQQQRAALARALAP---DP------ELILL 162 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTT---CC------SEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE
Confidence 4567999999999999999886 77 67777
No 62
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.90 E-value=0.26 Score=59.13 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
-..||||||+++|||=-+ + +. +||..+ ||.-+-+ |-.
T Consensus 552 G~~LSGGQkQRiaiARAl--~--~~-----~~IliL----------DE~tSaL------------------------D~~ 588 (1321)
T 4f4c_A 552 GTQLSGGQKQRIAIARAL--V--RN-----PKILLL----------DEATSAL------------------------DAE 588 (1321)
T ss_dssp SCCCCHHHHHHHHHHHHH--T--TC-----CSEEEE----------ESTTTTS------------------------CTT
T ss_pred CCCCCHHHHHHHHHHHHH--c--cC-----CCEEEE----------ecccccC------------------------CHH
Confidence 358999999999998643 3 34 589999 8866666 433
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+ ++.. ++-|.++.. ..|..+|+|..-|...+|+.+-+
T Consensus 589 --t-e~~i------~~~l~~~~~-~~T~iiiaHrls~i~~aD~Iivl 625 (1321)
T 4f4c_A 589 --S-EGIV------QQALDKAAK-GRTTIIIAHRLSTIRNADLIISC 625 (1321)
T ss_dssp --T-HHHH------HHHHHHHHT-TSEEEEECSCTTTTTTCSEEEEE
T ss_pred --H-HHHH------HHHHHHHhC-CCEEEEEcccHHHHHhCCEEEEe
Confidence 2 3332 233455443 57999999999999999998754
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.84 E-value=0.32 Score=54.32 Aligned_cols=76 Identities=14% Similarity=-0.002 Sum_probs=51.5
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+.+||||||+++|||-.++. +| .|..+ ||-.+-|
T Consensus 216 ~~~~~~LSgGe~Qrv~iAraL~~---~p------~llll----------DEPts~L------------------------ 252 (608)
T 3j16_B 216 KRDIEKLSGGELQRFAIGMSCVQ---EA------DVYMF----------DEPSSYL------------------------ 252 (608)
T ss_dssp GSCTTTCCHHHHHHHHHHHHHHS---CC------SEEEE----------ECTTTTC------------------------
T ss_pred CCChHHCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECcccCC------------------------
Confidence 35667999999999999988875 67 68888 7754444
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL 657 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~ 657 (926)
|.. ....+ .+.|.++.....|=.+|+|..-...+ .|+.+
T Consensus 253 D~~--~~~~l-------~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~ 292 (608)
T 3j16_B 253 DVK--QRLNA-------AQIIRSLLAPTKYVICVEHDLSVLDYLSDFVC 292 (608)
T ss_dssp CHH--HHHHH-------HHHHHGGGTTTCEEEEECSCHHHHHHHCSEEE
T ss_pred CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 333 33334 45677777766665555998765555 35543
No 64
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.86 E-value=0.29 Score=54.51 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=52.3
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||..|+. +| .|..+ ||-.+=| |
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~---~p------~lLlL----------DEPt~~L------------------------D 503 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLR---DA------DIYLL----------DEPSAYL------------------------D 503 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTS---CC------SEEEE----------ECTTTTC------------------------C
T ss_pred CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCccCC------------------------C
Confidence 4567999999999999998875 55 78888 6633333 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhcc-CCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSS-SPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~-~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ .++|.++.. ..-|=.+|+|......+ .|+.+-+
T Consensus 504 ~~--~~~~l-------~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl 545 (607)
T 3bk7_A 504 VE--QRLAV-------SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545 (607)
T ss_dssp HH--HHHHH-------HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 33 33333 456777753 35566677999877665 5776544
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=85.63 E-value=0.19 Score=59.73 Aligned_cols=80 Identities=14% Similarity=0.013 Sum_probs=56.1
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||++++||..++.....| .|+.+ ||-..=|
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p------~lLIL----------DEPTsGL------------------------ 897 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGR------TVYIL----------DEPTTGL------------------------ 897 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSS------EEEEE----------ESTTTTC------------------------
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCC------CEEEE----------ECCCCCC------------------------
Confidence 3567899999999999999887532334 68888 6633333
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT 658 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~ 658 (926)
|-. ....+ .++|.++.....|=.+|+|+.-.+...|+.+-
T Consensus 898 D~~--~~~~l-------~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv 937 (993)
T 2ygr_A 898 HFD--DIRKL-------LNVINGLVDKGNTVIVIEHNLDVIKTSDWIID 937 (993)
T ss_dssp CHH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred CHH--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 333 45555 56678887777787777999877666666543
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=85.21 E-value=0.14 Score=59.56 Aligned_cols=81 Identities=25% Similarity=0.152 Sum_probs=56.4
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||++++||..++.....| .|+.+ || ||-|-
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p------~lLIL----------DE---PTsGL--------------------- 764 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGG------TVYVL----------DE---PTTGL--------------------- 764 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSC------EEEEE----------EC---TTTTC---------------------
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCC------CEEEE----------EC---CCCCC---------------------
Confidence 3567899999999999998776532234 68888 66 55221
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
|-+ ....+ .++|.++.....|=.+|+|+.-.....|+.+-+
T Consensus 765 D~~--~~~~l-------~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L 805 (842)
T 2vf7_A 765 HPA--DVERL-------QRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDI 805 (842)
T ss_dssp CHH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred CHH--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEE
Confidence 333 55566 567888887778878889998777666765443
No 67
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.04 E-value=0.47 Score=52.06 Aligned_cols=72 Identities=11% Similarity=-0.047 Sum_probs=49.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||-.++. +| .|..+ ||-.+-| |
T Consensus 134 ~~~~~LSgGe~Qrv~iA~aL~~---~p------~illl----------DEPts~L------------------------D 170 (538)
T 3ozx_A 134 KDANILSGGGLQRLLVAASLLR---EA------DVYIF----------DQPSSYL------------------------D 170 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------C
Confidence 5678999999999999988875 67 68888 6644444 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhh
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQS 655 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~ 655 (926)
.. ....+ .+.|.++.. ..|=.+|+|..--...+..
T Consensus 171 ~~--~~~~l-------~~~l~~l~~-g~tii~vsHdl~~~~~~~d 205 (538)
T 3ozx_A 171 VR--ERMNM-------AKAIRELLK-NKYVIVVDHDLIVLDYLTD 205 (538)
T ss_dssp HH--HHHHH-------HHHHHHHCT-TSEEEEECSCHHHHHHHCS
T ss_pred HH--HHHHH-------HHHHHHHhC-CCEEEEEEeChHHHHhhCC
Confidence 33 34444 566777765 4565555998766555443
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=84.97 E-value=0.19 Score=59.55 Aligned_cols=80 Identities=19% Similarity=0.118 Sum_probs=55.5
Q ss_pred ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609 (926)
Q Consensus 530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (926)
.+.+..||||||++++||..++.....| .|+.+ || |+-|-
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p------~lLIL----------DE---PTsGL--------------------- 879 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGR------TLYIL----------DE---PTTGL--------------------- 879 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSC------EEEEE----------EC---TTTTC---------------------
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCC------CEEEE----------EC---CCCCC---------------------
Confidence 3577899999999999999887532334 68888 66 55221
Q ss_pred CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834 610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT 658 (926)
Q Consensus 610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~ 658 (926)
|-. +...+ .+.|.++.....|=.+|+|+.-.+...|+.+-
T Consensus 880 D~~--~~~~l-------~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv 919 (972)
T 2r6f_A 880 HVD--DIARL-------LDVLHRLVDNGDTVLVIEHNLDVIKTADYIID 919 (972)
T ss_dssp CHH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred CHH--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 333 45555 56677887777787777999877666666543
No 69
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.63 E-value=0.32 Score=53.40 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=51.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||++||||-.++. +| +|..+ ||-.+=| |
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~---~p------~lLlL----------DEPT~gL------------------------D 417 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAK---EA------DLYVL----------DQPSSYL------------------------D 417 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------C
Confidence 4677999999999999999886 67 78888 6633333 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ .++|.++... .-|=++|+|..-...+ +|+.+-+
T Consensus 418 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl 459 (538)
T 3ozx_A 418 VE--ERYIV-------AKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF 459 (538)
T ss_dssp HH--HHHHH-------HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22 22233 4567777653 4455667999876665 5776543
No 70
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.13 E-value=0.34 Score=54.15 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=50.6
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+.+||||||++||||..++. +| .|..+ ||-.+=| |
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~---~p------~lLlL----------DEPT~gL------------------------D 499 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGI---PA------DIYLI----------DEPSAYL------------------------D 499 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTS---CC------SEEEE----------CCTTTTC------------------------C
T ss_pred CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCCCCC------------------------C
Confidence 4667999999999999998876 66 78888 6633333 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhcc-CCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSS-SPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~-~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ .++|.++.. ..-|=.+|+|..-...+ .|+.+-+
T Consensus 500 ~~--~~~~i-------~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl 541 (608)
T 3j16_B 500 SE--QRIIC-------SKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541 (608)
T ss_dssp HH--HHHHH-------HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEC
T ss_pred HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22 22233 455666643 34566666999766655 5776543
No 71
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.85 E-value=0.38 Score=57.52 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=52.0
Q ss_pred cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA 612 (926)
Q Consensus 533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 612 (926)
...||||||+++|||=.+.- +| +|..+ ||--+-+ |..
T Consensus 524 g~~LSgGq~QriaiARal~~---~p------~iliL----------DEpts~L------------------------D~~ 560 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVR---NP------KILLL----------DEATSAL------------------------DTE 560 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTCSS------------------------CHH
T ss_pred CCccCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------CHH
Confidence 45899999999999988764 66 89999 7755555 332
Q ss_pred CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-..+ ++.|.+... ..|-.+|+|..-+...+|+.+-+
T Consensus 561 --~~~~i-------~~~l~~~~~-~~t~i~itH~l~~i~~~d~i~vl 597 (1284)
T 3g5u_A 561 --SEAVV-------QAALDKARE-GRTTIVIAHRLSTVRNADVIAGF 597 (1284)
T ss_dssp --HHHHH-------HHHHHHHHT-TSEEEEECSCHHHHTTCSEEEEC
T ss_pred --HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHcCCEEEEE
Confidence 22222 334545433 57888889999998888886643
No 72
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.39 E-value=0.36 Score=52.74 Aligned_cols=77 Identities=14% Similarity=0.052 Sum_probs=51.7
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||..|+. +| +|..+ ||--.=+ |
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~---~p------~lLlL----------DEPt~~L------------------------D 433 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLR---DA------DIYLL----------DEPSAYL------------------------D 433 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTS---CC------SEEEE----------ECTTTTC------------------------C
T ss_pred CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCcccC------------------------C
Confidence 5667999999999999998875 56 78888 5533333 3
Q ss_pred CCCCchhhhhhcccCCCCChhhhcc-CCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSS-SPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~-~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
-. +...+ .++|.++.. ..-|=.+|+|..-...+ +|+.+-+
T Consensus 434 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl 475 (538)
T 1yqt_A 434 VE--QRLAV-------SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF 475 (538)
T ss_dssp HH--HHHHH-------HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 33 33344 556777753 34565666999776665 5776544
No 73
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.55 E-value=0.19 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=22.5
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
..||||||+++|||-.++. +| +|..+
T Consensus 154 ~~LSGGqrQRvalARAL~~---~P------~lLLL 179 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLS---KA------KILLL 179 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHT---TC------CEEEE
T ss_pred ccCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence 5799999999999999986 67 67777
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.60 E-value=0.92 Score=53.88 Aligned_cols=74 Identities=18% Similarity=0.075 Sum_probs=50.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS 610 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (926)
+.+..||||||++++||..|+. +| .|..+ ||-.+=| |
T Consensus 544 ~~~~~LSGGqkQRvaLArAL~~---~P------~lLLL----------DEPTs~L------------------------D 580 (986)
T 2iw3_A 544 MPISALSGGWKMKLALARAVLR---NA------DILLL----------DEPTNHL------------------------D 580 (986)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHT---TC------SEEEE----------ESTTTTC------------------------C
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCccCC------------------------C
Confidence 4678999999999999999985 67 78888 7744444 4
Q ss_pred CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834 611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI 659 (926)
Q Consensus 611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v 659 (926)
.. +...+ .+.|.+ ...|=.+|+|+.-...+ +|+.+-+
T Consensus 581 ~~--~~~~l-------~~~L~~---~g~tvIivSHdl~~l~~~adrii~L 618 (986)
T 2iw3_A 581 TV--NVAWL-------VNYLNT---CGITSITISHDSVFLDNVCEYIINY 618 (986)
T ss_dssp HH--HHHHH-------HHHHHH---SCSEEEEECSCHHHHHHHCSEEEEE
T ss_pred HH--HHHHH-------HHHHHh---CCCEEEEEECCHHHHHHhCCEEEEE
Confidence 44 55555 344554 33455555998766655 4665543
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.56 E-value=0.86 Score=42.61 Aligned_cols=35 Identities=6% Similarity=-0.272 Sum_probs=27.6
Q ss_pred cccccCchhHHHHHHHHHH-----HHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834 531 VGIQHLSGGERTLAALAMI-----FTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT 585 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALI-----FAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~ 585 (926)
+....||||||..++||.. ++ .+| +|..+ ||+. |+
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~---~~p------~llil----------DEig-p~ 111 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKK---DRR------KVIII----------DEIG-KM 111 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHH---CTT------CEEEE----------CCCS-TT
T ss_pred ccccCcCHHHHHHHHHHhhccccccc---cCC------CEEEE----------eCCC-Cc
Confidence 4567899999999999985 43 356 78999 9987 55
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.09 E-value=7.1 Score=41.64 Aligned_cols=41 Identities=7% Similarity=0.063 Sum_probs=15.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKF 431 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELI 431 (926)
+++....+...++..+.++.++..++++.+++++..++..+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHH
Confidence 33333333333344444444333444443334433333333
No 77
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=75.89 E-value=0.9 Score=54.41 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=50.1
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||+++|||=.+.- +| +|..+ ||--+-+ |-.
T Consensus 1170 ~~LSgGq~Qrv~iARal~~---~p------~iLiL----------DEpTs~l------------------------D~~- 1205 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVR---QP------HILLL----------DEATSAL------------------------DTE- 1205 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHH---CC------SSEEE----------ESCSSSC------------------------CHH-
T ss_pred CccCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence 5899999999999988875 56 78888 6644333 322
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI 659 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v 659 (926)
+-... ++.|.+.. ...|=..|+|..-+...+|+.+-+
T Consensus 1206 -~~~~i-------~~~l~~~~-~~~tvi~isH~l~~i~~~dri~vl 1242 (1284)
T 3g5u_A 1206 -SEKVV-------QEALDKAR-EGRTCIVIAHRLSTIQNADLIVVI 1242 (1284)
T ss_dssp -HHHHH-------HHHHHHHS-SSSCEEEECSCTTGGGSCSEEEEE
T ss_pred -HHHHH-------HHHHHHhC-CCCEEEEEecCHHHHHcCCEEEEE
Confidence 22223 44455543 345777779999998888887654
No 78
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.47 E-value=49 Score=29.25 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQ 440 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrE 440 (926)
.+.|.+++. .|+...-.|++.++.+..++.....+.+.+...+.++...|..|...-..
T Consensus 4 md~iKkKm~-~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 4 MEAIKKKMQ-MLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 66666678888888888888888888888888888888888777665443
No 79
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=68.97 E-value=1.6 Score=52.57 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=53.9
Q ss_pred ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834 534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN 613 (926)
Q Consensus 534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 613 (926)
.+||||||+++|||=-| . +. +||..+ ||--+-+ |-.
T Consensus 1216 ~~LSgGQrQriaiARAl--l--r~-----~~ILiL----------DEaTSaL------------------------D~~- 1251 (1321)
T 4f4c_A 1216 TQLSGGQKQRIAIARAL--V--RN-----PKILLL----------DEATSAL------------------------DTE- 1251 (1321)
T ss_dssp CSSCHHHHHHHHHHHHH--H--SC-----CSEEEE----------ESCCCST------------------------TSH-
T ss_pred cccCHHHHHHHHHHHHH--H--hC-----CCEEEE----------eCccccC------------------------CHH-
Confidence 57999999999998643 3 33 489999 8865555 322
Q ss_pred CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCC
Q psy834 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSP 667 (926)
Q Consensus 614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~ 667 (926)
-++.-| +-|.++.. ..|-..|+|..-|...+|+.+=+ ..+|+|.|
T Consensus 1252 --tE~~Iq------~~l~~~~~-~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1252 --SEKVVQ------EALDRARE-GRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp --HHHHHH------HHHTTTSS-SSEEEEECSSSSTTTTCSEEEEESSSSEEEEECH
T ss_pred --HHHHHH------HHHHHHcC-CCEEEEeccCHHHHHhCCEEEEEECCEEEEECCH
Confidence 334322 23444432 35778889999999999998744 24555554
No 80
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=67.49 E-value=72 Score=28.87 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 398 KEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 398 KAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
.+..++..+..++..+..++.++......+...+..+..+. ..+..-+..+...+..+...|
T Consensus 220 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL-YAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555555555555433 445555666777777777665
No 81
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.59 E-value=57 Score=29.07 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRR 439 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKr 439 (926)
.+.|.+++. .|+...-.|++.++....++.....+.+.+..++.++...|..|+..-.
T Consensus 4 MdaIKkKm~-~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 4 MDAIKKKMQ-MLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345666666 6666667888888888888888888888888888888888877766544
No 82
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.56 E-value=14 Score=34.81 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 392 MQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHT 437 (926)
Q Consensus 392 Lk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKE 437 (926)
+-+.+.++-++++.+..+++++.++..+|+.+..+++..++.++++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555555554444433
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=65.25 E-value=2.4 Score=50.43 Aligned_cols=29 Identities=28% Similarity=0.125 Sum_probs=24.6
Q ss_pred cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834 531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP 568 (926)
Q Consensus 531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~ 568 (926)
+.+..||||||.+++||..|+. +| +|..+
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~---~P------~LLLL 925 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQ---RP------HLIVL 925 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTT---CC------SEEEE
T ss_pred CCccccCHHHHHHHHHHHHHHh---CC------CEEEE
Confidence 3577999999999999998874 66 78888
No 84
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.77 E-value=63 Score=27.59 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 383 GVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTR 438 (926)
Q Consensus 383 eL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEK 438 (926)
.|.+++. .|+...-.|.++++....++.....+...+..++..+...|..|+..-
T Consensus 3 ~ikkKm~-~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 3 AIKKKMQ-MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455555 555555678888888888888777777777777777777777666553
No 85
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.74 E-value=75 Score=31.63 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q psy834 449 VNDNIDATYKVH 460 (926)
Q Consensus 449 VNenFsEIFKeL 460 (926)
|...+-..|.++
T Consensus 173 i~~~lL~~Yeri 184 (256)
T 3na7_A 173 TEPKIYSFYERI 184 (256)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 333444555554
No 86
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.88 E-value=22 Score=31.15 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 388 HDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKV 434 (926)
Q Consensus 388 L~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeL 434 (926)
+. +|+..+.+..+++....+.+++|++++.+.+..+..|+..++++
T Consensus 21 i~-eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LR-DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 66666668888999999999999999999988888887777665
No 87
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=61.81 E-value=1e+02 Score=30.01 Aligned_cols=17 Identities=6% Similarity=0.096 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy834 444 NMYDFVNDNIDATYKVH 460 (926)
Q Consensus 444 kTFKQVNenFsEIFKeL 460 (926)
.-|+.|...++..|..|
T Consensus 119 ek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 119 LKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555444
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.18 E-value=44 Score=29.78 Aligned_cols=48 Identities=10% Similarity=0.258 Sum_probs=29.7
Q ss_pred HhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQ-------RLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTR 438 (926)
Q Consensus 391 KLk~vnkKAIE-------QYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEK 438 (926)
+|+..+..|+| ++++++++-..|..+.+++...++.+..-++.|+.+.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455557788 5555555555556666666666666766777776654
No 89
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=59.17 E-value=79 Score=31.95 Aligned_cols=80 Identities=9% Similarity=0.030 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTRR--------QKFENMYDFV 449 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEKr--------EAFmkTFKQV 449 (926)
.++.+..++. .++..++++..+|+.+.++...-..+... +.+-+..|...++.|++-.. ..|...|+-|
T Consensus 67 ~l~~l~~e~~-el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi 145 (213)
T 4ani_A 67 QIAELEAKLS-EMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMV 145 (213)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3455555665 66666678888888887766544333222 22223444444555554432 3577778888
Q ss_pred HHHHHHHHHHh
Q psy834 450 NDNIDATYKVH 460 (926)
Q Consensus 450 NenFsEIFKeL 460 (926)
-+.|..+|.++
T Consensus 146 ~k~l~~~L~k~ 156 (213)
T 4ani_A 146 YRSLVDALKKE 156 (213)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 88888888775
No 90
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=58.02 E-value=66 Score=30.42 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy834 382 GGVCRQHDVKMQLQL----NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQK-FENMYDFVNDNIDAT 456 (926)
Q Consensus 382 eeL~~eL~~KLk~vn----kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEA-FmkTFKQVNenFsEI 456 (926)
..|..+++ .|+.++ .+--+.|.+-...-+.-...+.+...-...|.+.+..|...+..+ |...|+.+-+.|..+
T Consensus 5 ~~V~s~l~-~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~ 83 (119)
T 2avr_X 5 ASLVGELQ-ALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 44555555 555554 344445666666556666666666666778888888887765544 567899999999999
Q ss_pred HHHhh
Q psy834 457 YKVHL 461 (926)
Q Consensus 457 FKeLV 461 (926)
++.|=
T Consensus 84 ~~~Ld 88 (119)
T 2avr_X 84 LKKLE 88 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 91
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=55.52 E-value=68 Score=28.44 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 399 EQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQ 440 (926)
Q Consensus 399 AIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrE 440 (926)
.-+.+......++.|..=.++|..+..+|.+.|..|+++..+
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~ 57 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334566677888888889999999999999999999988754
No 92
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=54.19 E-value=1.4e+02 Score=28.57 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=39.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNID 454 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFs 454 (926)
|++....+|-++|......++....++ ......+-+.|..++.+|...|...+......+.
T Consensus 167 K~~~k~~ka~~~Y~~~v~~~n~~~~~~---~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~ 227 (276)
T 2v0o_A 167 KAAVKSKKATDTYKLYVEKYALAKADF---EQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIK 227 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567777776666665554443 4667777788888888888877666655554444
No 93
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=53.40 E-value=93 Score=31.22 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVN 450 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVN 450 (926)
+++++..++. ++.....+|-++|......++... .........+-+.|+.++.+|...|...+....
T Consensus 184 ~~eK~~~k~~-k~~~~~~~a~~~Y~~~v~~~n~~~---~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~~ 250 (337)
T 2x3v_A 184 QQKKLVDKVD-KCRQDVQKTQEKYEKVLEDVGKTT---PQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIK 250 (337)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777 777777788888887777776663 445567788888888999888877766555433
No 94
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=53.00 E-value=66 Score=32.71 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=51.1
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVND 451 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNe 451 (926)
++++++..++. ++.....+|-++|......++.... ........+-+.++.++.+|...|...+-....
T Consensus 192 k~~eK~~~k~~-k~~~~~~~a~~~Y~~~v~~~n~~~~---~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~ 260 (350)
T 3aco_A 192 EQLKKLQDKIE-KCKQDVLKTKEKYEKSLKELDQGTP---QYMENMEQVFEQCQQFEEKRLRFFREVLLEVQK 260 (350)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777 7777777888888887777776644 456678888889999999998888766654443
No 95
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=52.38 E-value=68 Score=31.12 Aligned_cols=57 Identities=7% Similarity=0.103 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 405 PLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 405 EfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
.+..++..|.+++..+++....+...-..++..-.+....+.+.|...|..||+.+-
T Consensus 126 ~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 182 (202)
T 2p4w_A 126 ELAEFLHELNERIREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEIFRDIE 182 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556667777777777777777787888888888888888999999999999999984
No 96
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.42 E-value=79 Score=31.69 Aligned_cols=25 Identities=4% Similarity=-0.007 Sum_probs=16.2
Q ss_pred ccccccccCCchhhHHHHHHHHHhh
Q psy834 316 CGTLNFQDCTPHPLIIKIQQVFLYK 340 (926)
Q Consensus 316 ~g~~n~~d~~~h~Li~K~qq~fl~~ 340 (926)
.......||+...|+..-+..|...
T Consensus 53 ~~rAk~~~~~~eey~~~l~~aL~~~ 77 (213)
T 1ik9_A 53 SQEADDMAMEKGKYVGELRKALLSG 77 (213)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHCC-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhCC
Confidence 3445566788888887776666555
No 97
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=50.67 E-value=71 Score=30.82 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=25.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWI 426 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeS 426 (926)
+|+.+-..-..+|.++..+++.+..++.+|+.....
T Consensus 49 rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~ 84 (140)
T 1xaw_A 49 LYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666667777887777777777777777755443
No 98
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=49.46 E-value=97 Score=24.59 Aligned_cols=40 Identities=8% Similarity=0.177 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 398 KEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHT 437 (926)
Q Consensus 398 KAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKE 437 (926)
..-+++......++.+..+++.+.+....+.+-|..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 16 ELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566667777777777777777777777777766554
No 99
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=48.84 E-value=45 Score=36.72 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=19.1
Q ss_pred cccc--cccCchhHHHHHHHHHHHHHhc
Q psy834 529 SYVG--IQHLSGGERTLAALAMIFTIWK 554 (926)
Q Consensus 529 r~Qs--IQQLSGGEKSLVALALIFAIQK 554 (926)
.+.. +..+||||+...-+|+.-|+..
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~ 398 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQ 398 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHH
Confidence 4444 8899999999777777666543
No 100
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.54 E-value=1.4e+02 Score=33.26 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 400 QQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTR 438 (926)
Q Consensus 400 IEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEK 438 (926)
++++.++.+++.++..+.++|+.+++.+.+.|.++++.+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~ 107 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ 107 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 677888888888888888888888888888887766543
No 101
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.52 E-value=1.4e+02 Score=33.23 Aligned_cols=11 Identities=18% Similarity=0.075 Sum_probs=4.2
Q ss_pred ccccccccccc
Q psy834 309 FSKGEHLCGTL 319 (926)
Q Consensus 309 f~k~e~l~g~~ 319 (926)
...--|+.+.|
T Consensus 67 a~~c~~~~~~~ 77 (464)
T 1m1j_B 67 AGGCKHPLDEL 77 (464)
T ss_dssp CSCEECSSTTT
T ss_pred CCCccccCCCc
Confidence 33333444333
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.06 E-value=50 Score=28.62 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=19.3
Q ss_pred hhhhhhCCCCCCCcccCCccccCCCccccChhHHHHHHH
Q psy834 351 ESLDSIGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHD 389 (926)
Q Consensus 351 E~IRkLGsLPeeA~s~ekYss~eiPll~KdleeL~~eL~ 389 (926)
..+.+|..||.+...|.....+ ....+.+++...|.
T Consensus 41 ~~~~eL~~l~~d~~vy~~iG~v---fv~~~~~ea~~~L~ 76 (117)
T 2zqm_A 41 KALDEIESLPDDAVVYKTVGTL---IVKTTKDKAVAELK 76 (117)
T ss_dssp HHHHHHHTSCTTCCEEEEETTE---EEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHhHHHhhHH---HhhccHHHHHHHHH
Confidence 4566788888765322222222 12346667666666
No 103
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.72 E-value=74 Score=35.46 Aligned_cols=54 Identities=13% Similarity=0.021 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
+.+.+.+.+.++-.. ...++++.++.+++.++..+.++|+.++..+.+.|..++
T Consensus 14 n~~~v~~~~~~R~~~--~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k 67 (485)
T 3qne_A 14 DPEIIKASQKKRGDS--VELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRF 67 (485)
T ss_dssp CHHHHHHHHHHHTCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666532211 012556666666666666666666666666666555544
No 104
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.49 E-value=1.4e+02 Score=35.94 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 398 KEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNID 454 (926)
Q Consensus 398 KAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFs 454 (926)
+.+++++...+++..++.+.+.|+++...+++.++++.+++.+. .....+..+.+.
T Consensus 967 ~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l-ee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI-EEWADKYKHETE 1022 (1080)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44555555555555666666666666666666666666555443 333444443333
No 105
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.72 E-value=1.4e+02 Score=29.69 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
...+.+++. .++..+..+.++..++.++++.+...++++......++..++.++
T Consensus 92 ~~aL~kEie-~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 92 LRSLNIEED-IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 444444334444444444444444444444444444433333333
No 106
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.45 E-value=1.3e+02 Score=27.66 Aligned_cols=56 Identities=7% Similarity=0.107 Sum_probs=34.5
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
+.++.+..++. ++...+...-.++..+..++.+-..++.++...+..|..-++.|-
T Consensus 5 ~~~e~lre~l~-~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 5 SNYNQLKEDYN-TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777 666666555556666666666666666666666666655555443
No 107
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.40 E-value=1.3e+02 Score=30.83 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 396 LNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 396 nkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
|..|+++.+.+.++++.+..++..|+++...++.++++++ +|..|+.+|+
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q----------------~la~vi~~l~ 159 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ----------------YMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHh
Confidence 4578899999999999988888888888888888776654 7778888886
No 108
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=42.14 E-value=6.5 Score=42.45 Aligned_cols=27 Identities=4% Similarity=-0.220 Sum_probs=23.0
Q ss_pred cccCchhHHHHHHHHHH--HHHhccccCCCCCCce----ecC
Q psy834 533 IQHLSGGERTLAALAMI--FTIWKLVVRVQQLRPL----TPP 568 (926)
Q Consensus 533 IQQLSGGEKSLVALALI--FAIQKcDP~V~q~aPi----~~~ 568 (926)
..+||||||+.+|||.. |+. +| ++ +.+
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~---~p------~i~~sGLlL 265 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHL---DP------QVRRSGCIV 265 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH---CH------HHHHSCEEE
T ss_pred hhhhhHHHHHHHHHHHHHHhcc---Cc------ccCcceEEE
Confidence 77999999999999998 765 66 67 777
No 109
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.13 E-value=1.7e+02 Score=26.01 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK 436 (926)
.+..+..+|. .++..+.+.++..-+=-++++.|..+-++|......++..=.+|++
T Consensus 31 ~l~~vq~eld-eVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~r 86 (96)
T 1sfc_A 31 RLQQTQAQVD-EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 86 (96)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888 8888888999988888899999999998888887766655545443
No 110
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=41.79 E-value=7.5 Score=40.41 Aligned_cols=101 Identities=8% Similarity=0.046 Sum_probs=56.1
Q ss_pred cCchhhhhhhhCCCCCCCcccCCccccCCCccccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 346 FSPRRESLDSIGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRW 425 (926)
Q Consensus 346 ~skR~E~IRkLGsLPeeA~s~ekYss~eiPll~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKeke 425 (926)
..+...++++||.|-...+. .+++. +|.-..++...+. -+-++|..+++.+..|..+++++.+++.
T Consensus 130 rkri~~Itqrlg~ltL~~~~-----~~eId-LFewA~~L~q~i~--------~ln~k~~~~E~si~~L~~qLeElv~~k~ 195 (246)
T 1z56_A 130 ELESSAIIRKIAELTLHPVK-----KGEID-LFEMADKLYKDIC--------CVNDSYRNIKESDSSNRNRVEQLARERE 195 (246)
T ss_dssp -----------------------------------CTTSGGGTT--------HHHHHHHHTTTTTTHHHHHHHHTTTTHH
T ss_pred eehhhHHHhhheeEEeecCc-----cchhh-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778999988654321 12222 2222333333333 5666889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 426 ILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 426 SIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
....+|++=|.+-+..|...++.=...+.+.=+.|
T Consensus 196 ~~dqLi~~RD~~tR~~fv~LLNEKK~KIR~qqrlL 230 (246)
T 1z56_A 196 LLDKLLETRDERTRAMMVTLLNEKKKKIRELHEIL 230 (246)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHhhcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999988888887777766655444
No 111
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=41.73 E-value=88 Score=33.66 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=49.0
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVN 450 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVN 450 (926)
++++++..++. +......+|-++|......+... ..........+-+.|..|+.+|...|...|..+.
T Consensus 185 k~~eK~~~k~~-k~~~~~~~a~~~Y~~~v~~~n~~---~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~ 252 (486)
T 3haj_A 185 EQLKKLQDKIE-KCKQDVLKTKEKYEKSLKELDQG---TPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ 252 (486)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777 66666677778887777766665 3456678888888899999888887766665533
No 112
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=41.60 E-value=1.9e+02 Score=25.73 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFD 432 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIE 432 (926)
..+....++.+++..+..++..+..+++.+..........++
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444433333
No 113
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=40.93 E-value=1.9e+02 Score=25.51 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQK 429 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrE 429 (926)
.++.++...+..++..+..+++.+......+..
T Consensus 40 ~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 40 KQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333
No 114
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=40.89 E-value=1.8e+02 Score=25.37 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHT 437 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKE 437 (926)
.+.+++.+++ ..+..+.+-+|+.-+--++++.|..+-++|.......+..=.+|+++
T Consensus 6 ~l~~vq~ev~-evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 6 RLQQTQAQVD-EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888 88888888888888889999999999999988887776655555544
No 115
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=40.55 E-value=61 Score=32.16 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDN 452 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNen 452 (926)
++++..++. ++.....+|-++|......++.+..+ .......+-+.+..++.+|...|...+-.....
T Consensus 194 ~eK~~~k~~-k~~~~~~~a~~~Y~~~v~~~n~~~~~---~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~ 261 (312)
T 3abh_A 194 LKKLQDKIE-KCKQDVLKTKEKYEKSLKELDQGTPQ---YMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH 261 (312)
T ss_dssp HHGGGTTTT-SHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 44444456777777776666666443 445778888888899998888887766544444
No 116
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=40.39 E-value=1.6e+02 Score=24.62 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHT 437 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKE 437 (926)
.+..+..++. .+...++.+++...+=-++++.|..+-++|......+...=..|.++
T Consensus 5 ~i~~v~~qv~-ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 5 GIEGVKGAAS-GVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp -CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888 78888889999999999999999999999998888877766665543
No 117
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.35 E-value=1.3e+02 Score=27.02 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 395 QLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 395 vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
.|..|+++-+.+.++++.+..+...+++..+.++.+.+.++
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999998888775
No 118
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.42 E-value=1.1e+02 Score=32.13 Aligned_cols=46 Identities=4% Similarity=0.009 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 415 ADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 415 aRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
.+++.++...+.+.+.|+.+++ ..++..+-+..+...+.+.+.++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHHH
Confidence 3334444555666666666666 556666667777777766666653
No 119
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.38 E-value=2e+02 Score=25.06 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=26.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY 457 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF 457 (926)
++...+.++-+.|......+.+|..+...|..++..|...+...+ .+++.+...-..+...+.++-
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaE-e~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLE-DKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444433322222 233333344444444444443
No 120
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=37.93 E-value=1e+02 Score=33.36 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=8.8
Q ss_pred CCceeEeecChh
Q psy834 637 PNTRSRVQSSPT 648 (926)
Q Consensus 637 ~~tr~~v~~~~~ 648 (926)
++|--+++|-|+
T Consensus 235 t~SaVrl~HlPt 246 (354)
T 3d5a_X 235 TDSAVRVVHLPT 246 (354)
T ss_dssp CCCEEEEEETTT
T ss_pred ccceEEEEEcCC
Confidence 466777788886
No 121
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=37.91 E-value=64 Score=32.83 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 395 QLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVND 451 (926)
Q Consensus 395 vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNe 451 (926)
...+|-++|......+..+..++ ......+-+.|..|+.+|-..|...|..+..
T Consensus 198 ~~~~a~~~Y~~~l~~~n~~~~~y---~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~ 251 (320)
T 3m3w_A 198 EAEKMKTQYEQTLAELNRYTPRY---MEDMEQAFESCQAAERQRLLFFKDVLLTLHQ 251 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477777877777777665544 4567788888899999998888776666543
No 122
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.83 E-value=71 Score=42.82 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK 436 (926)
.+.+++++++ +.+..+..+.+++.+++++++.|+++++++..++..|++.++..+.
T Consensus 2015 ~l~~ae~~l~-~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2015 EVEQLENAAN-ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555 4444445555555556666666666666655555555555544433
No 123
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.81 E-value=97 Score=33.22 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 405 PLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQK 441 (926)
Q Consensus 405 EfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEA 441 (926)
++.++..++..++++++.+.+.+.+.+.+-+..|+..
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 124
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.36 E-value=1.4e+02 Score=34.16 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 426 ILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 426 SIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
+|+..|..|+.+-.+.| .....+..++.++..+|
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34444444444444444 33444444444444433
No 125
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=36.43 E-value=2.5e+02 Score=25.59 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQ 440 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrE 440 (926)
.+..++++|. .+...+.+..-+.+.+....+++..++++-...+..++.-|..|++.-++
T Consensus 21 ~I~~LR~qid-~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 21 EMRELRRQVD-QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccH
Confidence 3555666665 55555444444444444444444444444333344444444444443333
No 126
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.36 E-value=40 Score=28.87 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=19.2
Q ss_pred hhhhhhCCCCCCCcccCCccccCCCccccChhHHHHHHH
Q psy834 351 ESLDSIGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHD 389 (926)
Q Consensus 351 E~IRkLGsLPeeA~s~ekYss~eiPll~KdleeL~~eL~ 389 (926)
..+.+|..||.+...|.....+ ....+.+++...|.
T Consensus 36 ~~~~EL~~l~~d~~vy~~iG~v---fv~~~~~e~~~~L~ 71 (107)
T 1fxk_A 36 KALEELSRAADDAEVYKSSGNI---LIRVAKDELTEELQ 71 (107)
T ss_dssp HHHHHHHHSCTTCCEEEEETTE---EEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCchHHHHHhHH---HHhccHHHHHHHHH
Confidence 3556677788765332222222 12346677776666
No 127
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=34.75 E-value=1.6e+02 Score=35.29 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 382 GGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKF 431 (926)
Q Consensus 382 eeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELI 431 (926)
.++..++. +++..+.+..+.+.++.+++..|..+++++..........+
T Consensus 860 ~~L~~eL~-el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l 908 (1184)
T 1i84_S 860 QAKDEELQ-RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908 (1184)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 55555544445555555555555555555554444333333
No 128
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=34.30 E-value=2.7e+02 Score=26.85 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 424 RWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY 457 (926)
Q Consensus 424 keSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF 457 (926)
.+..++.++.+...=.+.+-..++.-...|..+|
T Consensus 188 l~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l 221 (251)
T 2fic_A 188 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 221 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333333333333333333333333
No 129
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.58 E-value=2e+02 Score=24.47 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy834 403 LAPLLDRLRRYEA 415 (926)
Q Consensus 403 YEEfeEQyEELea 415 (926)
+..+..++..|..
T Consensus 43 v~~L~kKiq~lE~ 55 (81)
T 1ic2_A 43 LVALQKKLKGTED 55 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 130
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.79 E-value=1.5e+02 Score=30.10 Aligned_cols=8 Identities=38% Similarity=1.178 Sum_probs=4.8
Q ss_pred hhhcCC-CC
Q psy834 470 LIVSGW-PK 477 (926)
Q Consensus 470 L~lSgw-P~ 477 (926)
+++.|| |.
T Consensus 287 ~~~~gWvp~ 295 (357)
T 3rrk_A 287 AALMGWVPQ 295 (357)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEeeH
Confidence 456788 43
No 131
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=32.13 E-value=2.3e+02 Score=23.83 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
.+..+..+|. .+...+.+-++..-+=-++++.|..+-++|......++..=..|+
T Consensus 9 ~l~~vq~el~-ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~ 63 (74)
T 2nps_A 9 KIKHVQNQVD-EVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 63 (74)
T ss_dssp SSHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888 787877788888888888888888888888887776655544444
No 132
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=31.69 E-value=1.2e+02 Score=27.75 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQL-----NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKK 430 (926)
Q Consensus 380 dleeL~~eL~~KLk~vn-----kKAIEQYEEfeEQyEELeaRrEELdKekeSIrEL 430 (926)
....+..++. ++..++ ...+..|..+..++++|.++++.+.+....-+..
T Consensus 24 ~~~~lk~E~~-~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 24 KYLAKVKERH-ELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp HHHHHHHHHH-HHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666 666666 3444455556666666666666666555544433
No 133
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.98 E-value=2.2e+02 Score=38.45 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 398 KEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTR 438 (926)
Q Consensus 398 KAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEK 438 (926)
+--++|++...+.+.|+.+.+...........+|..|..+|
T Consensus 2046 ~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2046 TYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33344444444444444444444445555555555555544
No 134
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.83 E-value=1e+02 Score=33.66 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 400 QQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKV 434 (926)
Q Consensus 400 IEQYEEfeEQyEELeaRrEELdKekeSIrELIEeL 434 (926)
++++.++.+++.++..+.++|+.+++.+.+.|..+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666666666666666665555555543
No 135
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=29.98 E-value=5.1e+02 Score=29.69 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhHHhhhh
Q psy834 228 AERIMQRIESSLLQVRN 244 (926)
Q Consensus 228 ~~~~~~~~~~~~~~~~~ 244 (926)
|...+-|-|..|-|-.|
T Consensus 245 ~~~~~~~~~~~~~~~~~ 261 (602)
T 1cii_A 245 ARNALTRAEQQLTQQKN 261 (602)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccC
Confidence 44556666777777666
No 136
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=29.84 E-value=1.8e+02 Score=34.90 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=28.8
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKV 434 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeL 434 (926)
+.+.++..++. +++..+..+.+++..+.+++..+..++++.......+.+.+..+
T Consensus 864 ~eL~el~~~L~-~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l 918 (1184)
T 1i84_S 864 EELQRTKERQQ-KAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918 (1184)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 55555555555555555555555555554444444444444444
No 137
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=29.45 E-value=5.8e+02 Score=27.72 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=6.8
Q ss_pred CCceeEeecChh
Q psy834 637 PNTRSRVQSSPT 648 (926)
Q Consensus 637 ~~tr~~v~~~~~ 648 (926)
++|.-+++|-|+
T Consensus 257 t~saVrl~HiPt 268 (365)
T 1gqe_A 257 TESAVRITHIPT 268 (365)
T ss_dssp SCCEEEEEETTT
T ss_pred ccceEEEEECCC
Confidence 345555666664
No 138
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.30 E-value=2.5e+02 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 409 RLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 409 QyEELeaRrEELdKekeSIrELIEeLD 435 (926)
..+.|..+++++++.+..|+..++.|+
T Consensus 82 ~~~~L~~~~~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 82 RAELLKKQRIELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444444444
No 139
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=28.32 E-value=2.4e+02 Score=22.89 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK 436 (926)
.+..+..++. .++..+.+.++..-+=-++++.|..+-++|......+...=.+|++
T Consensus 5 ~l~~v~~~l~-ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r 60 (63)
T 1n7s_A 5 RLQQTQAQVD-EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 60 (63)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888 8888878888888888888888888888888877666555444443
No 140
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=27.54 E-value=1.1e+02 Score=30.04 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNI 453 (926)
Q Consensus 391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenF 453 (926)
+......+|-.+|......+.....+ .......+-+.|..|+.+|...|...+..+...+
T Consensus 181 k~~~~~~~a~~~Y~~~v~~~n~~~~~---~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~ 240 (290)
T 3i2w_A 181 KTKDQVQKCREKYEQAIAEITKYNSV---YIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCL 240 (290)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344457777887777777666443 5677788888888999888888877766555443
No 141
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=27.16 E-value=3.7e+02 Score=25.36 Aligned_cols=34 Identities=6% Similarity=-0.043 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 427 LQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 427 IrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
|.+-+..+...+..-|..+|..+-.....+|..+
T Consensus 189 L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~ 222 (244)
T 1uru_A 189 LHDELPALYDSRILFLVTNLQTLFATEQVFHNET 222 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554444444443
No 142
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=27.01 E-value=3.1 Score=37.81 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=20.3
Q ss_pred CCChhhhccCCCceeEeecChhhHHhhhhh
Q psy834 627 QNPLPEVSSSPNTRSRVQSSPTTRSRVQSS 656 (926)
Q Consensus 627 ~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~ 656 (926)
.++|.++....-|-.+|+|+.-...+++..
T Consensus 139 ~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 139 KKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 455666766666777779998766665543
No 143
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.41 E-value=1.4e+02 Score=31.77 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYK 422 (926)
Q Consensus 380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdK 422 (926)
+...+..++. +|+..++.+..+...+.+.++.+..++.+|+.
T Consensus 6 ~~~~~~~~~~-~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 6 TVQKILEEVR-ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666 56555444444444444444444444444433
No 144
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=25.88 E-value=4.9e+02 Score=25.65 Aligned_cols=64 Identities=6% Similarity=0.005 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 398 KEQQRLAPLLDRLRRYEA-------DLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 398 KAIEQYEEfeEQyEELea-------RrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
+.+-+|+....+++.|.. ++..++++....++.++.|+.+=.+.+=..|......|...|..++
T Consensus 136 ~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i 206 (237)
T 4avm_A 136 RKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNIS 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457777777776642 3445555666666677777776666666666666666666665554
No 145
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=25.87 E-value=1.6e+02 Score=28.37 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 411 RRYEADLKALYKRRWILQKKFDKVKHTRRQKF 442 (926)
Q Consensus 411 EELeaRrEELdKekeSIrELIEeLDKEKrEAF 442 (926)
..+..++.+..+.....++.+++|+++|...|
T Consensus 48 q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~ 79 (136)
T 3ter_A 48 AFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVL 79 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHhhhchh
Confidence 33445555555666666666666666655544
No 146
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=25.73 E-value=1.4e+02 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=19.2
Q ss_pred ccccccccCCchhhHHHHHHHHHhhccc
Q psy834 316 CGTLNFQDCTPHPLIIKIQQVFLYKKSC 343 (926)
Q Consensus 316 ~g~~n~~d~~~h~Li~K~qq~fl~~K~~ 343 (926)
-++|+-+..+.+.|..|..+.|...|..
T Consensus 8 ~s~l~~LEaeyq~L~~kE~qrynqeka~ 35 (119)
T 2avr_X 8 VGELQALDAEYQNLANQEEARFNEERAQ 35 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777887777777666553
No 147
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.68 E-value=1.8e+02 Score=26.19 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 398 KEQQRLAPLL----DRLRRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 398 KAIEQYEEfe----EQyEELeaRrEELdKekeSIrELIEeLDK 436 (926)
+..+++..+. ++++.-.++++++.++++.++..|..|+.
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444 33455556666666666666666666655
No 148
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=25.55 E-value=2.7e+02 Score=22.58 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy834 438 RRQKFENMYDFVN 450 (926)
Q Consensus 438 KrEAFmkTFKQVN 450 (926)
..++|...|+...
T Consensus 50 a~~af~~~~~~~~ 62 (93)
T 4ioe_A 50 TQAKFRGEFIQSK 62 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3334444333333
No 149
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=25.49 E-value=54 Score=33.30 Aligned_cols=64 Identities=6% Similarity=0.020 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL 461 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV 461 (926)
...+..|+++.++++++..+.+.+.++..+++..|++|+.++.+.=...... .++..++|.+++
T Consensus 137 E~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~-~k~~~qly~~vt 200 (250)
T 2ve7_C 137 EACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPS-AVYVAQLYHQVS 200 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHh
Confidence 4566678888999999999999999999999999999888866544333322 567788898876
No 150
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=25.12 E-value=3.7e+02 Score=25.62 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK 436 (926)
.-|...|+++..++..+...++............|..|+.
T Consensus 69 eeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEe 108 (147)
T 2b9c_A 69 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 108 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555554443
No 151
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.88 E-value=3.5e+02 Score=32.62 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=18.3
Q ss_pred CCCCcHHHHHHHHhhhchhhHHhhhc
Q psy834 160 SEFPGVERCLRRIESSLLNVRDLLEN 185 (926)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (926)
-+|+.-.-|+.-||.. ..+-.||+.
T Consensus 487 i~f~dn~~~idlie~~-~Gil~lLde 511 (1080)
T 2dfs_A 487 IDFYDNQPCINLIEAK-MGVLDLLDE 511 (1080)
T ss_dssp CCCCCCHHHHHHHHST-TSHHHHHHH
T ss_pred ccccccHHHHHHHhcC-Cceeeeccc
Confidence 4678888899999986 556666643
No 152
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=24.79 E-value=1.2e+02 Score=33.13 Aligned_cols=82 Identities=6% Similarity=-0.024 Sum_probs=32.0
Q ss_pred ccChhHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q psy834 378 WQDRGGVCRQHDVKMQLQLN-----KEQQRLAPLLDRLRR---YEADLKALYKRRWILQKKFDKV-----KHTRRQKFEN 444 (926)
Q Consensus 378 ~KdleeL~~eL~~KLk~vnk-----KAIEQYEEfeEQyEE---LeaRrEELdKekeSIrELIEeL-----DKEKrEAFmk 444 (926)
|.+++.+..++. .++..+. .-.++|.++..++.. +...++++....+.|.++++-+ |.+..+.+..
T Consensus 16 ~~~l~~~~~r~~-el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~ 94 (371)
T 1zbt_A 16 YDQLQAVEDRYE-ELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHH-HC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred HhhHHHHHHHHH-HHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 345666666666 6655541 011222222222222 2233333344444444433333 3344455555
Q ss_pred HHHHHHHHHHHHHHHh
Q psy834 445 MYDFVNDNIDATYKVH 460 (926)
Q Consensus 445 TFKQVNenFsEIFKeL 460 (926)
-++.+...+..+-.+|
T Consensus 95 e~~~l~~~l~~le~~l 110 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKL 110 (371)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666667776666544
No 153
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.68 E-value=2.3e+02 Score=31.52 Aligned_cols=36 Identities=19% Similarity=0.006 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 400 QQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 400 IEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
++++.++.+++.++..+.++|+..+..+.+.|..++
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555554443
No 154
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.22 E-value=1.2e+02 Score=24.06 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 417 LKALYKRRWILQKKFDKVKHTRRQKFEN 444 (926)
Q Consensus 417 rEELdKekeSIrELIEeLDKEKrEAFmk 444 (926)
+++.++.+..++..++.|+.+|+..|+.
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555666667777777888877763
No 155
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.05 E-value=3e+02 Score=24.78 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 396 LNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 396 nkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
+..|+++-+.+.+.++.+..++..|+++-..++.+.+..+
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888888888777777666544
No 156
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.71 E-value=4.8e+02 Score=25.68 Aligned_cols=79 Identities=10% Similarity=-0.027 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---------HHHHHHH
Q psy834 381 RGGVCRQHDVKMQ----LQLNKEQQRLAPLLDRLRRYEADLKA--LYKRRWILQKKFDKVKHTR---------RQKFENM 445 (926)
Q Consensus 381 leeL~~eL~~KLk----~vnkKAIEQYEEfeEQyEELeaRrEE--LdKekeSIrELIEeLDKEK---------rEAFmkT 445 (926)
+..+..++. .++ ..++++..+|+.+.++...-..+... +.+-+..|...++.|++-. ...|...
T Consensus 44 ~~~l~~~l~-e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~l~~G 122 (197)
T 1dkg_A 44 VANLEAQLA-EAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVED 122 (197)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC------CHHHHHH
T ss_pred HHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccchHHHHHHH
Confidence 445555555 444 35577777888877665543332221 1222333333333333322 1345555
Q ss_pred HHHHHHHHHHHHHHh
Q psy834 446 YDFVNDNIDATYKVH 460 (926)
Q Consensus 446 FKQVNenFsEIFKeL 460 (926)
|+-|-+.|..+|.++
T Consensus 123 v~~~~~~l~~~L~~~ 137 (197)
T 1dkg_A 123 IELTLKSMLDVVRKF 137 (197)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHC
Confidence 556666666666553
No 157
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.70 E-value=4.3e+02 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 409 RLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 409 QyEELeaRrEELdKekeSIrELIEeLD 435 (926)
..+.|..+++++++.+..++..++.|+
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~ 122 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQ 122 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 158
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=23.66 E-value=2.1e+02 Score=23.62 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 403 LAPLLDRLRRYEADLKALYKRRWILQKKFDKV----KHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 403 YEEfeEQyEELeaRrEELdKekeSIrELIEeL----DKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
|+++...-..+....+++......|...+..| +-.-.++|...|+..+..|..+-..|
T Consensus 10 ~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L 71 (98)
T 3gwk_C 10 PEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLL 71 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHH
No 159
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.63 E-value=6.5e+02 Score=26.34 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 407 LDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFEN 444 (926)
Q Consensus 407 eEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmk 444 (926)
....+...++.+.++++...++..|++++.+-.++-..
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 33333444445555555555555555555554444433
No 160
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.62 E-value=1.1e+02 Score=26.47 Aligned_cols=44 Identities=5% Similarity=0.027 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQL-----NKEQQRLAPLLDRLRRYEADLKALYKRRW 425 (926)
Q Consensus 381 leeL~~eL~~KLk~vn-----kKAIEQYEEfeEQyEELeaRrEELdKeke 425 (926)
...+..++. ++..++ ..-+..|..+..++++|.++++.+.+.+.
T Consensus 8 ~~~l~~E~~-~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 8 YLAKVKERH-ELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHH-HHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666 666665 34444555556666666666665555443
No 161
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.30 E-value=4.3e+02 Score=26.46 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 410 LRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 410 yEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
++.+....+++.+..+++-..-++++..-...|...++.=...+.+.=.+|
T Consensus 148 ~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 148 NERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333444444455555544444444444333
No 162
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=23.18 E-value=3e+02 Score=22.29 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 381 RGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH 436 (926)
Q Consensus 381 leeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK 436 (926)
+..+..++. ..+..+.+-++..-+=-++++.|..+-++|......+...=..|++
T Consensus 4 l~~vq~~l~-evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r 58 (61)
T 3b5n_A 4 TAELQAEID-DTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRK 58 (61)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777787 7777778888888888888888888888888777666655555544
No 163
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.16 E-value=2.5e+02 Score=24.10 Aligned_cols=15 Identities=0% Similarity=0.111 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy834 443 ENMYDFVNDNIDATY 457 (926)
Q Consensus 443 mkTFKQVNenFsEIF 457 (926)
..-+..+...+...|
T Consensus 62 ~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 62 LADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 164
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.94 E-value=3.2e+02 Score=27.36 Aligned_cols=19 Identities=0% Similarity=-0.050 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy834 442 FENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 442 FmkTFKQVNenFsEIFKeL 460 (926)
...++.-+-..++....+.
T Consensus 128 ~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3345555566666666554
No 165
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.81 E-value=4.5e+02 Score=24.14 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 402 RLAPLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 402 QYEEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
++..+...+..|..++.+-...+..++.....|+
T Consensus 20 ~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie 53 (97)
T 2eqb_B 20 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 53 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 166
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.67 E-value=5.5e+02 Score=25.16 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 382 GGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDN 452 (926)
Q Consensus 382 eeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNen 452 (926)
..+..++. .+...+..--+++.+-....+.+.+++..|.-....+++.+..|+++-.+.+.+-..++...
T Consensus 71 ~~L~~El~-~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qE 140 (152)
T 3a7p_A 71 AILQKELK-SKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKE 140 (152)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 44444433334444455556666677777777777777777777777766666666555543
No 167
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.53 E-value=3.7e+02 Score=23.15 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 409 RLRRYEADLKALYKRRWILQKKFDKVKHT 437 (926)
Q Consensus 409 QyEELeaRrEELdKekeSIrELIEeLDKE 437 (926)
..+.|..+++.+.+.+..+...++.|+..
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRT 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666543
No 168
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.29 E-value=2.9e+02 Score=24.84 Aligned_cols=40 Identities=8% Similarity=0.177 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 401 QRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQ 440 (926)
Q Consensus 401 EQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrE 440 (926)
+++..+......+..++.|.+.....|...|+.|+.+.++
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555544444
No 169
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.23 E-value=5.5e+02 Score=28.40 Aligned_cols=8 Identities=13% Similarity=-0.164 Sum_probs=4.6
Q ss_pred chhHHHHH
Q psy834 537 SGGERTLA 544 (926)
Q Consensus 537 SGGEKSLV 544 (926)
|..||++.
T Consensus 223 sq~q~a~~ 230 (390)
T 1deq_A 223 SQLQEAPL 230 (390)
T ss_pred ccccccch
Confidence 55566655
No 170
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.87 E-value=2.2e+02 Score=30.75 Aligned_cols=36 Identities=8% Similarity=-0.054 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 404 APLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRR 439 (926)
Q Consensus 404 EEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKr 439 (926)
.++.++.+++.++.+++..+.+.+.+.+.+.+.+|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr 48 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERK 48 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333
No 171
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.82 E-value=4.7e+02 Score=24.55 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=39.0
Q ss_pred ccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 378 WQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRR----Y-EADLKALYKRRWILQKKFDKVKHTRRQKF 442 (926)
Q Consensus 378 ~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEE----L-eaRrEELdKekeSIrELIEeLDKEKrEAF 442 (926)
+.++++|.+++. ..+.+|.-|..++....++++. + +.-++.=......|+++|.+|+++.-++.
T Consensus 34 M~~ieeLQ~Ei~-~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENIT-AHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888887 7777775555555555554432 1 12222333456778888888887766654
No 172
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.70 E-value=3e+02 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 400 QQRLAPLLDRLRRYEADLKALYKRRWILQKKF 431 (926)
Q Consensus 400 IEQYEEfeEQyEELeaRrEELdKekeSIrELI 431 (926)
++++.++.+++.++..+.++|+.++.++.+.|
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444444333
No 173
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=21.54 E-value=5.5e+02 Score=24.75 Aligned_cols=79 Identities=6% Similarity=0.022 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYK 458 (926)
Q Consensus 379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFK 458 (926)
++++++..+.. +......+|-.+|.......+.. +........-.+-+.|+.++.+|...|...|.........+..
T Consensus 172 ~~~eK~~~k~~-~~~~~~~~a~~~Y~~~v~~~n~~--~~~~~~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~~~~~~~~~ 248 (305)
T 2efl_A 172 ADVEKARQQAQ-IRHQMAEDSKADYSSILQKFNHE--QHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIP 248 (305)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred Hh
Q psy834 459 VH 460 (926)
Q Consensus 459 eL 460 (926)
.+
T Consensus 249 ~~ 250 (305)
T 2efl_A 249 II 250 (305)
T ss_dssp HH
T ss_pred HH
No 174
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.25 E-value=3e+02 Score=25.86 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.5
Q ss_pred hCCCCCC
Q psy834 356 IGSSPSK 362 (926)
Q Consensus 356 LGsLPee 362 (926)
-|.+|..
T Consensus 12 ~~~~~~~ 18 (110)
T 2v4h_A 12 SGLVPRG 18 (110)
T ss_dssp -CCCCTT
T ss_pred cCCCcch
Confidence 3566653
No 175
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.89 E-value=2.8e+02 Score=29.95 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 404 APLLDRLRRYEADLKALYKRRWILQKKFDKVK 435 (926)
Q Consensus 404 EEfeEQyEELeaRrEELdKekeSIrELIEeLD 435 (926)
..++++++++.++.+++++..+.+...++.++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444444
No 176
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.87 E-value=1.6e+02 Score=24.91 Aligned_cols=38 Identities=11% Similarity=0.245 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKV 434 (926)
Q Consensus 397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeL 434 (926)
.+|++-...+.++...|..+.++|......++..+..|
T Consensus 43 ~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 43 DKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666666677777777777777777777776666543
No 177
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.08 E-value=4.2e+02 Score=25.52 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy834 403 LAPLLDRLRRYEADLKALYKRRWILQKKF--DKVKHTRRQKFENMYDFVNDNIDATYKVH 460 (926)
Q Consensus 403 YEEfeEQyEELeaRrEELdKekeSIrELI--EeLDKEKrEAFmkTFKQVNenFsEIFKeL 460 (926)
+..+++..+.+.++++++..+...|+..| +.|..+....+.+-...+++.|..+...|
T Consensus 23 L~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~L 82 (135)
T 1i6z_A 23 LKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEI 82 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566666666666666666655 33333444444455556666676666665
No 178
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.06 E-value=7.7e+02 Score=28.36 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834 404 APLLDRLRRYEADLKALYKRRWILQKKFD 432 (926)
Q Consensus 404 EEfeEQyEELeaRrEELdKekeSIrELIE 432 (926)
+..+.+|+...+++++.++....+++.+.
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555544433
Done!