RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy834
(926 letters)
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 81.7 bits (202), Expect = 2e-16
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 33/154 (21%)
Query: 401 QRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460
R R + + L + +F K+K R++ FE +D+V+D++DA Y+
Sbjct: 228 SRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYR-- 285
Query: 461 LKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSF--GHAFLDITGAEQEPYLAG 518
L G+A L I + EP+ AG
Sbjct: 286 ----------------------------ELTKNPNSNVELAGGNASLTIEDED-EPFNAG 316
Query: 519 MNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTI 552
+ + TP + + +++LSGGE+T+AALA++F I
Sbjct: 317 IKYHATPPLKRFKDMEYLSGGEKTVAALALLFAI 350
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 2e-10
Identities = 80/598 (13%), Positives = 162/598 (27%), Gaps = 211/598 (35%)
Query: 66 IQHTESSTSSSNSEQNLRELTKATTYIQN----IESLLSQASDLIERRQLEAHRILYVLL 121
+ + S S++ + + + + +LLS+ +++++ E RI Y L
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 122 --KFRTELEGTHQSYDSGSDQAGFISPME-TQDENPPSEHSSEFPGVERCLRRIESSLLN 178
+TE +I + ++N F + + R++ L
Sbjct: 95 MSPIKTEQRQPSMMTRM------YIEQRDRLYNDNQV------FA--KYNVSRLQP-YLK 139
Query: 179 VRDLLENRPSDTLSPAQ------------SEVQAEFLSGESREE--------LTFANESS 218
+R L L PA+ + V + + L N +S
Sbjct: 140 LRQALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 219 ETNSQGVPRAERIMQRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELS-----PPTPG 273
E +++ ++ L Q+ R Q EL P
Sbjct: 195 P---------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE- 244
Query: 274 PNPNSRA--------NPNP----NPNSR-----ANPNLSRRAQANNSAQNPL------FS 310
N N + + ++ A + L +
Sbjct: 245 -----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 311 KGEHL----------CGTLNFQDCTPHPLIIKI---------------QQVFLYKKSCIS 345
E L + T +P + I + V K + I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI- 358
Query: 346 FSPRRESLDSIGSSPSKQH---------SVGHTTSCNIPLR-----WQDRGGVCRQHDVK 391
SL+ + + ++ S +IP W D V
Sbjct: 359 ---IESSLNVLEPAEYRKMFDRLSVFPPSA------HIPTILLSLIWFDVIKSDVMVVVN 409
Query: 392 MQLQ----LNKEQQ----RLAPLLDRLRRYEADLKALYKR---RWILQKKFD-------- 432
+L + K+ + + + L+ + AL++ + + K FD
Sbjct: 410 -KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 433 --------------KVKHTRRQK-FENMY-DF--------------------VNDNID-A 455
++H R F ++ DF +N
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 456 TYKVHLKSSACQ----VYLIVSGWPKKKENLVI-----VVQSNLFSP------QALTQ 498
YK ++ + + V I+ PK +ENL+ +++ L + +A Q
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 56.0 bits (134), Expect = 5e-08
Identities = 74/532 (13%), Positives = 150/532 (28%), Gaps = 162/532 (30%)
Query: 387 QHDVKMQLQLNKEQQRLAPLL-DRLRRYEADL---------KALYKRR---WILQKKFDK 433
H M + + Q + +L + + K++ + I+ K D
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DA 60
Query: 434 VKHTRR------QKFENMYD-FVNDNIDATYK---VHLKSSACQVYLIVSGWPKKKENLV 483
V T R K E M FV + + YK +K+ Q ++ + ++++ L
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 484 IVVQSNLFSPQALTQSFGHAFLDITGA----EQEPYLA--GMNFSCTPQGRSYVGIQHLS 537
Q +F+ +++ +L + A + G+ +G
Sbjct: 121 NDNQ--VFAKYNVSRL--QPYLKLRQALLELRPAKNVLIDGV-----------LGS---- 161
Query: 538 GGERTLAALA---------MIFTI-WKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPG 587
G+ +A M F I W + + Q
Sbjct: 162 -GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----------------- 203
Query: 588 PNPHSRVNPNPNSRANPNPNPNSRAN--PNLSRRAQANNSAQNPL--------PEVSSSP 637
+++PN SR++ + N R + RR + +N L + ++
Sbjct: 204 -KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 638 NTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYT 697
N ++ TTR + Q + S T + + + + ++ KY
Sbjct: 263 NLSCKILL--TTRFK-------QVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKY- 310
Query: 698 LQSTKSNLSRRAQANNSAQNPLP------EVSSSPNTRSRVQSSPTTRSRVQSSPTTRSR 751
L +L R NP + T + V T
Sbjct: 311 LDCRPQDLPREVLTT----NPRRLSIIAESIRDGLATWDNWK-------HVNCDKLTTI- 358
Query: 752 VQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQS------SANI----------RSAEQGS 795
++SSL + R SA+I +
Sbjct: 359 ----------IESSLNVLE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 796 PSI------RSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSR 841
+ S V++ P +S+++ S + ++ +H
Sbjct: 405 MVVVNKLHKYSLVEKQPK-----ESTISIPSIYL---ELKVKLENEYALHRS 448
Score = 43.3 bits (101), Expect = 4e-04
Identities = 75/480 (15%), Positives = 127/480 (26%), Gaps = 183/480 (38%)
Query: 131 HQSYDSGSDQAG-----------FISPMETQDENPPSEHSSEFPGVERCLRRIESS---- 175
H +++G Q F+ + +D V+ + I S
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-------------VQDMPKSILSKEEID 52
Query: 176 -LLNVRDLLEN--RPSDTLSPAQSEVQAEFLSGESREELTFANESSETNSQGVPRAERIM 232
++ +D + R TL Q E+ +F+ R F +M
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----------------LM 95
Query: 233 QRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELSPPTPGPNPNSRANPNPNPNSRANP 292
I++ Q P + + N N
Sbjct: 96 SPIKTEQRQ---------------------------PSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 293 -NLSRRAQANNSAQNPLFS------------KGEHLCG-T-------------------- 318
N+SR Q + L G G T
Sbjct: 129 YNVSRL-QPYLKLRQALLELRPAKNVLIDGVLG---SGKTWVALDVCLSYKVQCKMDFKI 184
Query: 319 --LNFQDCTPHPLIIKIQQVFLYKKSCISFSPRRESLDSIGSSPSKQHSVGHTTSCNIPL 376
LN ++C ++++ Q LY+ +D +S S S NI L
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ------------IDPNWTSRSDH-------SSNIKL 225
Query: 377 RWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKAL--YKRRWILQKKFD-- 432
R ++ Q L LL + + YE L L + F+
Sbjct: 226 R------------------IHSIQAELRRLL-KSKPYENCLLVLLNVQNAKAW-NAFNLS 265
Query: 433 -KVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENL---VIVVQS 488
K+ T R K V D + A H+ + L P + ++L + +
Sbjct: 266 CKILLTTRFK------QVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP 315
Query: 489 NLFSPQALTQSFGHAF-LDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGG-ERTLAAL 546
+ LT + L I + T +V L+ E +L L
Sbjct: 316 QDLPREVLT---TNPRRLSIIAESIR------DGLATWDNWKHVNCDKLTTIIESSLNVL 366
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 6e-10
Identities = 76/524 (14%), Positives = 149/524 (28%), Gaps = 182/524 (34%)
Query: 82 LRELTKATTYIQNIE-SLLSQASDLIERRQLEAHRILYVLLKFRTELEGTHQSYDSGSDQ 140
R LT ++ ++E LL + QL+ +F L + + + +
Sbjct: 6 TRPLT--LSH-GSLEHVLLVPTASFFIASQLQE--------QFNKILPEPTEGFAADDEP 54
Query: 141 A----------GFISPMETQDENPPSEHSSEFPGVERCLRRIESSLLNVRDLLENRPSDT 190
G++S PS+ + CL E+
Sbjct: 55 TTPAELVGKFLGYVS-----SLVEPSKVGQFDQVLNLCLTEFEN---------------- 93
Query: 191 LSPAQSEVQAEFLSGESREEL-TFANESSETNSQGVPRAERIMQRIESSLLQVRNLLELR 249
+L G ++ A + + N + + + +++ + + R + + R
Sbjct: 94 ----------CYLEG---NDIHALAAKLLQENDTTLVKTKELIK----NYITARIMAK-R 135
Query: 250 PLTPPPQS-------DPES------GTQG-------EL------SPPTPGPNPNSRANPN 283
P S + + G QG EL G
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD--------- 186
Query: 284 PNPNSRANPNLSRRAQANNSAQNPLFSKGEHLCGTLNFQDCTPH-----------PLIIK 332
+ LS + A +F++G ++ L TP PLI
Sbjct: 187 --LIKFSAETLSELIRTTLDA-EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 333 IQQVFLYKKSC--ISFSPR--RESLDS-------------IGSSPSKQHSVGHTTSCNIP 375
IQ Y + + F+P R L I + S +
Sbjct: 244 IQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 376 LRWQDRGGVCRQHDV---------KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWI 426
L + G R ++ ++ L + +P+L
Sbjct: 303 LFFI--G--VRCYEAYPNTSLPPSILEDSLENNEGVPSPML------------------- 339
Query: 427 LQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH--LKSSACQVYLIVSGWPKKKENLVI 484
+ + +++ ++ + N ++ A +V L + A L+VSG P+ L +
Sbjct: 340 ------SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN--LVVSGPPQSLYGLNL 391
Query: 485 VVQSNLFSPQALTQS----------FGHAFLDITGAEQEPYLAG 518
++ +P L QS F + FL + L
Sbjct: 392 TLR-KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Score = 58.9 bits (142), Expect = 8e-09
Identities = 67/424 (15%), Positives = 122/424 (28%), Gaps = 150/424 (35%)
Query: 388 HDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDK------VKHTRRQK 441
H + +L L + L + ++ Y R + ++ FDK +
Sbjct: 102 HALAAKL-LQENDTTLVKTKELIKNY-------ITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 442 FE---------NMYDFVND--NIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNL 490
+ N D+ + ++ TY V + LI + + +
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD------LI--------KFSAETLSELI 199
Query: 491 FSPQALTQSFGHAFLDI----TGAEQEP---YLAGMNFSCTP-----QGRSYV------G 532
+ + F +I P YL + SC P Q YV G
Sbjct: 200 RTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLG 257
Query: 533 I------QHLSG----GERTLAALAM-------------------IFTIWKLVVRVQQLR 563
+L G + + A+A+ +F + + VR +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF--F-IGVRCYEAY 314
Query: 564 P-LTPPPQSDPESGTQGELSPPTP-----GPNP---HSRVNPNPNSRANPNPNPNSRANP 614
P + PP +S E P+P VN + N
Sbjct: 315 PNTSLPPSILEDSLENNE-GVPSPMLSISNLTQEQVQDYVN---------------KTNS 358
Query: 615 NLSRRAQAN----NSAQNPLPEVSSSP------NTRSRVQSSPTT--RSRVQSS------ 656
+L Q N A+N + VS P N R +P+ +SR+ S
Sbjct: 359 HLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 657 ----LTIQSA-------EQGSPNTRSRVQSSA-NIRSAEQGSPISRTRFTKYTLQSTKSN 704
L + ++ S + + + + + P+ T F L+ +
Sbjct: 417 SNRFLPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-FDGSDLRVLSGS 474
Query: 705 LSRR 708
+S R
Sbjct: 475 ISER 478
Score = 46.6 bits (110), Expect = 5e-05
Identities = 73/450 (16%), Positives = 123/450 (27%), Gaps = 135/450 (30%)
Query: 1 MREVQTLE-SQLFPVIRLERVTMERR--PSPEIHIPTVDSTSSVSSEEIRRHESNLNLLR 57
V+ + Q V+ L E +IH + ++ E L++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE----LIK 124
Query: 58 RKTQQRRTIQHTESSTSSS---------------------NSEQNLRELTKA-TTYIQNI 95
R + S+S N++ EL TY +
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 96 ESLLSQASDLIERRQLEAHRILYVLLKFRTELEGTHQSYDSGSDQAGFISPMETQDENPP 155
L+ +++ L + + + G + ++ ENP
Sbjct: 185 GDLIKFSAET--------------LSELIRTTLDAEKVFTQGLNILEWL-------ENPS 223
Query: 156 SEHSSEFPGVERCLRRIESS--LLNVRDLLENRPSDTLSPAQSEVQAEFLSGESREELTF 213
+ ++ L I S L+ V L A V A+ L G + EL
Sbjct: 224 NTPDKDY------LLSIPISCPLIGVIQL-----------AHYVVTAKLL-GFTPGELRS 265
Query: 214 ANESSETNSQGVPRAERI--MQRIESSLLQVRNLLEL------------RPLTPPPQ--S 257
+ + +SQG+ A I ES + VR + + + PP
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 258 DPESGTQGELSPPTP-----GPNPN---SRANPNPNPNSRANPNLSRRAQAN----NSAQ 305
D +G P+P N + N +L Q N A+
Sbjct: 326 DSLENNEG---VPSPMLSISNLTQEQVQDYVN-------KTNSHLPAGKQVEISLVNGAK 375
Query: 306 N------P--LFSKGEHL----CGTLNFQDCTPH----PLIIKIQQVFLYKKSCIS--F- 346
N P L+ L + Q P K FL ++ F
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL---KFSNRFLP----VASPFH 428
Query: 347 SPR-RESLDSIGSSPSKQHSVGHTTSCNIP 375
S + D I K + + IP
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 32.7 bits (74), Expect = 0.84
Identities = 28/171 (16%), Positives = 50/171 (29%), Gaps = 48/171 (28%)
Query: 754 SSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQ---------GSPSIRSAVQR 804
+ +TR LT+ GS V +++ A Q P+ A
Sbjct: 2 DAYSTRP-----LTLS---HGSLEHVLLVPTASFFI-ASQLQEQFNKILPEPTEGFAADD 52
Query: 805 SPNTRSRVQSSL-------TTHSAEQGSPTTRSTV-------------QGAPRIHSREQS 844
P T + L + E V +G IH+
Sbjct: 53 EPTT----PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHALAAK 107
Query: 845 SPNTHSAEQRSPNTRSRVQSSATTRSTEQR---SRSRSPLTRSTEQGSPNI 892
+ T+ +++ T R +R +S S L R+ +G+ +
Sbjct: 108 LLQENDTTL--VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 44.6 bits (106), Expect = 3e-05
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 501 GHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKL 555
G A L + E +P+ G+ P G+ I+ +SGGE+ L ALA +F I K
Sbjct: 31 GSARLILENPE-DPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKF 84
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 44.2 bits (104), Expect = 1e-04
Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 11/196 (5%)
Query: 578 QGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSP 637
Q +++ P H A N + S + + P +
Sbjct: 297 QSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTL 356
Query: 638 NTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYT 697
+ + + S+ + S ++R SS+ S SRTR
Sbjct: 357 AKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTR----- 411
Query: 698 LQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPT 757
+ + Q P S+ P S + S ++ + +
Sbjct: 412 ---ATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNY---ESALKGIEGLNFD 465
Query: 758 TRSRVQSSLTIQSAEQ 773
RVQ + ++
Sbjct: 466 GDERVQYAAALEHHHH 481
Score = 43.5 bits (102), Expect = 3e-04
Identities = 17/184 (9%), Positives = 52/184 (28%), Gaps = 2/184 (1%)
Query: 640 RSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYTLQ 699
+ S L + + + ++S + +P Q
Sbjct: 300 IASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTLAKQ 359
Query: 700 STKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTR 759
K+ + A + + SR + ++R + + SR +++ +
Sbjct: 360 --KAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTRATDASP 417
Query: 760 SRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTH 819
+ + Q + + S+ + + + +++ + + RVQ +
Sbjct: 418 GAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNYESALKGIEGLNFDGDERVQYAAALE 477
Query: 820 SAEQ 823
Sbjct: 478 HHHH 481
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 40.7 bits (96), Expect = 0.001
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 501 GHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKL 555
G L+I + AG S GR + LSGGE+ L LA++F + ++
Sbjct: 185 GEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEI 239
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.22
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 399 EQQRLAPLLDRLRRYEAD------LKA 419
E+Q L L L+ Y D +KA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKA 44
Score = 29.1 bits (64), Expect = 3.9
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 9/35 (25%)
Query: 166 ERCLRRIESSLLNVRDLLENRPSDTLSPAQSEVQA 200
++ L+++++SL L D+ +PA + ++A
Sbjct: 19 KQALKKLQASL----KLYA--D-DS-APALA-IKA 44
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 34.0 bits (77), Expect = 0.27
Identities = 22/192 (11%), Positives = 47/192 (24%), Gaps = 10/192 (5%)
Query: 560 QQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRV------NPNPNSRANPNPNPNSRAN 613
+ PP + P G Q L+P + + + ++ +PN +
Sbjct: 41 SYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100
Query: 614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR---VQSSLTIQSAEQGSPNTR 670
+ Q P+ P + + + L + P
Sbjct: 101 VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPP 160
Query: 671 SRVQSSANIRSAEQGSPISR-TRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTR 729
+ + +E + R T + S L + P + +
Sbjct: 161 LVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPP 220
Query: 730 SRVQSSPTTRSR 741
+ R R
Sbjct: 221 PLNEDGLIVRCR 232
Score = 30.9 bits (69), Expect = 2.3
Identities = 20/204 (9%), Positives = 40/204 (19%), Gaps = 4/204 (1%)
Query: 567 PPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSA 626
P Q L P P + P + + +
Sbjct: 10 PQAQLQYGQNATP-LQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ 68
Query: 627 QNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGS 686
+ + +++ + + P + + Q + Q S
Sbjct: 69 LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQ---QQPMAAPAYGQPS 125
Query: 687 PISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSP 746
L+ P P + P S
Sbjct: 126 AAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185
Query: 747 TTRSRVQSSPTTRSRVQSSLTIQS 770
SS +S++ L I+
Sbjct: 186 LNAVPKNSSLLKKSKLPFGLVIRP 209
Score = 30.6 bits (68), Expect = 3.5
Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 3/176 (1%)
Query: 560 QQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRR 619
Q P P + G G PP + ++ + + A +++
Sbjct: 27 AQFMPPQDPAAAGMSYGQMG--MPPQGAVPSMGQQQFLTPAQEQLHQQIDQ-ATTSMNDM 83
Query: 620 AQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANI 679
N +P + + + + SA G ++
Sbjct: 84 HLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDL 143
Query: 680 RSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSS 735
+ T + + L +N S +++ P S ++ S
Sbjct: 144 LTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKS 199
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 33.0 bits (75), Expect = 0.51
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 15/139 (10%)
Query: 167 RCLRRIESSLLNVRDLLENRPSDTLSPAQSEVQAEFLSGESREELTFANESSETNSQGVP 226
+ + +L + D A++E+ A S + + ++ +
Sbjct: 324 EAISQTFPWVLTCCQFDDKETEDD-KDAETEIPAGESS----------DAAPSADAAQMK 372
Query: 227 RAERIMQRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELSPPTPGPNPNSRANPNPNP 286
+MQ+++ + PPPQ P G + PP P P P
Sbjct: 373 EMMAMMQKMQQQQAAYPP----QGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAP 428
Query: 287 NSRANPNLSRRAQANNSAQ 305
A P + N + Q
Sbjct: 429 PQGAPPAAPPQGVDNQAYQ 447
Score = 29.9 bits (67), Expect = 4.5
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 558 RVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLS 617
++QQ + PP P P G P P P P A P
Sbjct: 380 KMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGY--PPQGYPPPPQGAPPQGAPPAAP 437
Query: 618 RRAQANNSAQ 627
+ N + Q
Sbjct: 438 PQGVDNQAYQ 447
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.8 bits (74), Expect = 0.66
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 11/195 (5%)
Query: 564 PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQAN 623
T P + E+ T +PG +P S + +P S +P+ S
Sbjct: 1518 EATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYS----PT 1573
Query: 624 NSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAE 683
+ + +P S + S + + S T S SP+ S + ++
Sbjct: 1574 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSP 1631
Query: 684 QGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT-TRSRV 742
SP S + Y+ S + + + + S S SP + S +SP+ + +
Sbjct: 1632 SYSPTSPS----YSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687
Query: 743 QSSPTTRSRVQSSPT 757
SPT+ + +SP+
Sbjct: 1688 SYSPTSPNYSPTSPS 1702
Score = 31.6 bits (71), Expect = 1.6
Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 10/172 (5%)
Query: 568 PPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRR---AQANN 624
P P S + SP +P S +P+ +P S + S +
Sbjct: 1567 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1626
Query: 625 SAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQG-SPNTRSRVQSSANIRSAE 683
S +P +S + + SPT+ S +S SP + S +S +
Sbjct: 1627 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY---- 1682
Query: 684 QGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSS 735
SP S + S S S +P + ++S
Sbjct: 1683 --SPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.1 bits (73), Expect = 0.77
Identities = 21/169 (12%), Positives = 62/169 (36%), Gaps = 4/169 (2%)
Query: 392 MQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVND 451
+ L+ +++ + +A LL + +E + + + +K+ ++++ K E++ + +
Sbjct: 141 LSLKPSEKLETVAKLLG-IDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKE 199
Query: 452 NIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAE 511
+ + + + V + + + + + + AF +
Sbjct: 200 MSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYV---PLIQKYLNEAFSEFDLPY 256
Query: 512 QEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQ 560
L + I +LSGGE+ AL++ I ++ +
Sbjct: 257 SFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNR 305
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.80
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 23/64 (35%)
Query: 267 LSPPTPGPNPNSRANPNPN-----PN-SRANPNLSRRAQANNSAQNPLFSKGEHLCGTLN 320
++ R PN N P P + R FS+G+ +C
Sbjct: 2 MTRE-SIDKRAGRRGPNLNIVLTCPECKVYPPKIVER-----------FSEGDVVCA--- 46
Query: 321 FQDC 324
C
Sbjct: 47 --LC 48
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 29.4 bits (66), Expect = 1.2
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 268 SPPTPGPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPL---FSKGEHL 315
PP P P+ NS + N + A+ + +AQ K E L
Sbjct: 6 PPPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERL 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 31.5 bits (71), Expect = 1.7
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 498 QSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMI 549
F +T E E + + + P+ S+ I+ LSGG++ LA
Sbjct: 866 ALASGQFRPLTRKEIEEHCSMLGL--DPEIVSHSRIRGLSGGQKVKLVLAAG 915
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 30.6 bits (68), Expect = 2.7
Identities = 13/101 (12%), Positives = 29/101 (28%)
Query: 780 SRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIH 839
+ + Q + R + +S + +G + AP
Sbjct: 333 HTIDRTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDS 392
Query: 840 SREQSSPNTHSAEQRSPNTRSRVQSSATTRSTEQRSRSRSP 880
E+ + ++ SP+ + + + R R R R
Sbjct: 393 GAEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPK 433
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 30.2 bits (68), Expect = 3.0
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 566 TPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN 609
+P P+ PE P P P++ + P ++P+P+P
Sbjct: 303 SPDPEPSPEPE-------PKPSLEPNTSLEREPRPNSSPSPSPG 339
Score = 29.8 bits (67), Expect = 4.4
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 252 TPPPQSDPESGTQGELSPPTPGPNPNSRANPNPNPNSRANPNLSRRAQA 300
+P P+ PE P P PN+ P PNS +P+ + ++
Sbjct: 303 SPDPEPSPEPE-------PKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
Score = 29.5 bits (66), Expect = 5.6
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 567 PPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRAN-PNPNPN 609
P P+ +P+ + + P P+S +P+P + P+P P+
Sbjct: 308 PSPEPEPKPSLEP-NTSLEREPRPNSSPSPSPGQASETPHPRPS 350
Score = 29.1 bits (65), Expect = 6.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 582 SPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN 615
P+P P P + PN + P PN + +P
Sbjct: 306 PEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPG 339
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 30.4 bits (68), Expect = 3.3
Identities = 18/165 (10%), Positives = 37/165 (22%), Gaps = 7/165 (4%)
Query: 713 NSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAE 772
+S +N + + S + +R + +++ + AE
Sbjct: 3 SSGRNFFRKKVMGNRRSDEPAKTKKGLSSI-LDAARWNRGEPQVPDFRHLKAEV---DAE 58
Query: 773 QGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTV 832
+ R + V P + + S+
Sbjct: 59 KPGATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADA---PLELGDSSP 115
Query: 833 QGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSATTRSTEQRSRS 877
QG + S AE SP + + E
Sbjct: 116 QGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEPP 160
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 30.1 bits (66), Expect = 4.1
Identities = 19/156 (12%), Positives = 40/156 (25%)
Query: 563 RPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQA 622
R PP+ P SP P + RA P P +RR
Sbjct: 12 RRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71
Query: 623 NNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSA 682
+ + P +P+ + + ++ +S R+
Sbjct: 72 LSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRAR 131
Query: 683 EQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNP 718
E G+ + + + + + + +
Sbjct: 132 ELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKA 167
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 28.5 bits (63), Expect = 5.1
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 554 KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNP 590
KL + V P + P P P+P
Sbjct: 101 KLSINVVAANATVSMPPPSSSPPSSVMPPPVMPPPSP 137
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 27.4 bits (61), Expect = 5.6
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 270 PTPGPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNP---LFSKGEHL 315
P P PNS + P + ++ A + A + F KG+ +
Sbjct: 2 PLGSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQM 50
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 29.1 bits (66), Expect = 6.9
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 11/44 (25%)
Query: 527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQ 570
GRS LSGGE LA V +Q P Q
Sbjct: 121 GRST---NQLSGGEWQRVRLAA--------VVLQITPQANPAGQ 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.122 0.338
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,249,774
Number of extensions: 688922
Number of successful extensions: 1547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 89
Length of query: 926
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 824
Effective length of database: 3,853,851
Effective search space: 3175573224
Effective search space used: 3175573224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.2 bits)