RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy834
         (926 letters)



>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 33.4 bits (76), Expect = 0.14
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 16/79 (20%)

Query: 514 PYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDP 573
           P+ A              GI  +      +A L  I+ ++ +++  ++   L   P    
Sbjct: 448 PHAAVPM-----VFNVLAGI--VLL----VALLLFIYGLFSVLLSRERKPELAEAPLPFA 496

Query: 574 ESGTQGELSPPTPGPNPHS 592
           E      +S P       +
Sbjct: 497 EV-----ISGPEDRRLVLA 510


>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus
           thermophilus [TaxId: 274]}
          Length = 175

 Score = 29.4 bits (65), Expect = 1.1
 Identities = 17/128 (13%), Positives = 30/128 (23%), Gaps = 4/128 (3%)

Query: 397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFEN-MYDFVNDNIDA 455
              +   A LL  LR        LY     L  + + +           +       +  
Sbjct: 21  ALSRAVGAALLPWLRERGFRHILLY---HPLPHELNLLPLMEAYPARYYLPKVAGKGLTV 77

Query: 456 TYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPY 515
                L      +    +     +   ++VV    F  +      G  F D    E    
Sbjct: 78  HPFGPLAPGPFGLLEPTTPPEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVRAA 137

Query: 516 LAGMNFSC 523
             G+    
Sbjct: 138 TVGVVPQA 145


>d1ua4a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 454

 Score = 29.8 bits (67), Expect = 1.7
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 426 ILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIV 485
           + +   +K       K + +    N NIDA    +L S   +  +I +G  ++       
Sbjct: 6   LYKNAIEKAI-KSVPKVKGVLLGYNTNIDAI--KYLDSKDLEERIIKAG-KEEVIKYSEE 61

Query: 486 VQSNLFSPQALTQSFGHAFLDITGAE 511
           +   + +   L  S   +      AE
Sbjct: 62  LPDKINTVSQLLGSILWSIRRGKAAE 87


>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
           Thermococcus litoralis [TaxId: 2265]}
          Length = 451

 Score = 28.7 bits (64), Expect = 3.9
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 426 ILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIV 485
           + +K  DKV+ + R K   +    N NIDA    +LK    +  +   G  +       +
Sbjct: 4   LYEKALDKVEASIR-KVRGVLLAYNTNIDAI--KYLKREDLEKRIEKVGKEEVLRYSEEL 60

Query: 486 VQSNLFSPQALTQSFGHAFLDITGAE 511
               + +   L  S   +      AE
Sbjct: 61  -PKEIETIPQLLGSILWSIKRGKAAE 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.122    0.338 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,935,089
Number of extensions: 130353
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 8
Length of query: 926
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 832
Effective length of database: 1,116,976
Effective search space: 929324032
Effective search space used: 929324032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.1 bits)