Query psy8340
Match_columns 173
No_of_seqs 135 out of 209
Neff 3.6
Searched_HMMs 29240
Date Sat Aug 17 01:13:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqq_A Zinc finger HIT domain- 98.2 6.4E-07 2.2E-11 61.3 3.2 38 115-152 6-43 (56)
2 1x4s_A Protein FON, zinc finge 98.1 9.7E-07 3.3E-11 61.2 2.6 38 114-151 4-45 (59)
3 2dj8_A Protein CBFA2T1; zinc f 71.3 3.7 0.00013 26.8 3.2 33 117-149 11-44 (60)
4 2yqp_A Probable ATP-dependent 67.6 3.1 0.0001 28.8 2.2 32 119-150 17-48 (60)
5 2pzo_E CAP-Gly domain-containi 56.2 2.4 8.1E-05 27.5 0.0 18 118-135 17-34 (42)
6 2od1_A Protein CBFA2T1; zinc f 54.9 7.4 0.00025 25.3 2.3 30 120-149 12-42 (60)
7 3j20_Y 30S ribosomal protein S 54.5 3.2 0.00011 27.0 0.4 38 106-144 5-49 (50)
8 2hqh_E Restin; beta/BETA struc 54.1 2.7 9.2E-05 24.7 0.0 16 120-135 2-17 (26)
9 2odd_A Protein CBFA2T1; MYND z 52.3 7.5 0.00026 25.3 2.0 31 119-149 15-46 (64)
10 2kn9_A Rubredoxin; metalloprot 51.2 12 0.00041 26.8 3.0 13 129-141 57-69 (81)
11 2d8q_A BLU protein, zinc finge 47.9 23 0.00079 23.9 4.0 33 117-149 11-44 (70)
12 1lv3_A Hypothetical protein YA 47.8 9.8 0.00034 26.6 2.1 32 119-150 7-38 (68)
13 4rxn_A Rubredoxin; electron tr 46.8 10 0.00035 25.1 2.0 13 129-141 33-45 (54)
14 1yuz_A Nigerythrin; rubrythrin 42.0 9.8 0.00033 30.5 1.5 22 120-141 170-195 (202)
15 2jw6_A Deformed epidermal auto 40.8 15 0.0005 22.7 1.9 30 121-150 9-39 (52)
16 3e2u_E CAP-Gly domain-containi 40.0 6.4 0.00022 25.5 0.1 17 119-135 18-34 (42)
17 2v3b_B Rubredoxin 2, rubredoxi 39.3 15 0.0005 24.2 1.8 13 129-141 33-45 (55)
18 1znf_A 31ST zinc finger from X 38.1 23 0.0008 17.0 2.2 19 132-150 1-19 (27)
19 1dx8_A Rubredoxin; electron tr 37.8 16 0.00056 25.2 2.0 21 129-152 37-57 (70)
20 1klr_A Zinc finger Y-chromosom 36.0 22 0.00077 17.2 1.9 19 132-150 2-20 (30)
21 1p7a_A BF3, BKLF, kruppel-like 35.5 28 0.00097 18.2 2.4 20 131-150 10-29 (37)
22 2m0e_A Zinc finger and BTB dom 34.7 23 0.0008 17.0 1.8 18 132-149 2-19 (29)
23 1ard_A Yeast transcription fac 34.1 32 0.0011 16.6 2.3 19 132-150 2-20 (29)
24 2kvh_A Zinc finger and BTB dom 32.9 21 0.00072 17.4 1.5 19 132-150 3-21 (27)
25 1e8j_A Rubredoxin; iron-sulfur 31.7 26 0.00088 22.8 2.0 13 129-141 33-45 (52)
26 1rik_A E6APC1 peptide; E6-bind 31.6 19 0.00065 17.6 1.1 19 132-150 2-20 (29)
27 1paa_A Yeast transcription fac 31.2 31 0.001 16.9 1.9 19 132-150 2-20 (30)
28 1s24_A Rubredoxin 2; electron 30.1 23 0.00078 25.7 1.7 13 129-141 65-77 (87)
29 4ayb_B DNA-directed RNA polyme 29.6 15 0.00052 36.3 0.9 34 122-155 1062-1111(1131)
30 3pwf_A Rubrerythrin; non heme 29.3 23 0.00079 27.6 1.8 23 119-141 136-162 (170)
31 2kvf_A Zinc finger and BTB dom 28.7 29 0.00099 16.8 1.6 19 132-150 3-21 (28)
32 3qww_A SET and MYND domain-con 28.3 27 0.00093 30.4 2.2 30 120-149 48-80 (433)
33 2jvx_A NF-kappa-B essential mo 28.1 30 0.001 20.2 1.7 21 130-150 1-21 (28)
34 3lq9_A DNA-damage-inducible tr 26.7 24 0.00081 27.6 1.4 26 17-42 94-121 (134)
35 1rim_A E6APC2 peptide; E6-bind 26.4 48 0.0016 17.3 2.3 19 132-150 2-20 (33)
36 2elr_A Zinc finger protein 406 26.2 50 0.0017 17.0 2.3 20 131-150 8-27 (36)
37 1vq8_1 50S ribosomal protein L 25.4 15 0.0005 25.1 -0.0 18 115-132 26-44 (57)
38 2m0f_A Zinc finger and BTB dom 25.3 37 0.0013 16.2 1.6 19 132-150 2-20 (29)
39 2kvg_A Zinc finger and BTB dom 25.2 23 0.00078 17.5 0.7 18 132-149 3-20 (27)
40 3qwp_A SET and MYND domain-con 25.2 34 0.0012 29.5 2.2 29 121-149 47-78 (429)
41 2m0d_A Zinc finger and BTB dom 24.9 39 0.0013 16.2 1.7 19 132-150 3-21 (30)
42 2lvu_A Zinc finger and BTB dom 30.5 16 0.00054 17.7 0.0 18 132-149 2-19 (26)
43 3j21_e 50S ribosomal protein L 24.5 20 0.00068 24.8 0.5 18 115-132 26-44 (62)
44 2e72_A POGO transposable eleme 24.2 53 0.0018 21.7 2.5 19 131-149 11-29 (49)
45 2elx_A Zinc finger protein 406 23.8 38 0.0013 17.3 1.5 20 131-150 6-25 (35)
46 1vd4_A Transcription initiatio 23.4 36 0.0012 20.8 1.5 15 130-144 37-51 (62)
47 2els_A Zinc finger protein 406 22.7 43 0.0015 17.4 1.6 19 132-150 9-27 (36)
48 1srk_A Zinc finger protein ZFP 22.7 41 0.0014 17.3 1.5 20 131-150 6-25 (35)
49 3a43_A HYPD, hydrogenase nicke 22.6 34 0.0012 25.8 1.5 24 118-141 67-116 (139)
50 2elt_A Zinc finger protein 406 22.3 41 0.0014 17.3 1.5 19 132-150 9-27 (36)
51 4a18_A RPL37, ribosomal protei 21.6 17 0.00059 27.0 -0.3 17 116-132 26-42 (94)
52 2yte_A Zinc finger protein 473 21.4 67 0.0023 17.1 2.3 20 131-150 9-28 (42)
53 2elq_A Zinc finger protein 406 21.2 45 0.0016 17.3 1.5 19 132-150 9-27 (36)
54 2elo_A Zinc finger protein 406 21.1 35 0.0012 17.8 1.0 20 131-150 8-27 (37)
55 1h7b_A Anaerobic ribonucleotid 21.0 22 0.00076 33.2 0.2 30 106-141 531-567 (605)
56 2ytb_A Zinc finger protein 32; 20.4 68 0.0023 17.1 2.2 20 131-150 10-29 (42)
57 2eon_A ZFP-95, zinc finger pro 20.3 68 0.0023 17.8 2.2 20 131-150 11-30 (46)
58 2yti_A Zinc finger protein 347 20.3 69 0.0024 17.6 2.3 20 131-150 11-30 (46)
59 2elm_A Zinc finger protein 406 20.3 41 0.0014 17.9 1.2 20 131-150 8-27 (37)
60 2elv_A Zinc finger protein 406 20.3 49 0.0017 17.1 1.5 19 132-150 9-27 (36)
61 2eos_A B-cell lymphoma 6 prote 20.2 73 0.0025 17.1 2.3 20 131-150 10-29 (42)
62 2enf_A Zinc finger protein 347 20.1 70 0.0024 17.6 2.2 20 131-150 11-30 (46)
No 1
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=6.4e-07 Score=61.32 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCCCCCcccccccCCCccccCCCCCCcccCHHHHHHHh
Q psy8340 115 PSFKPSLKYSDISRFECNYKDPQTKLYYYNIEEYKLIR 152 (173)
Q Consensus 115 PSlkP~kkyCdITGlpA~YtDP~TgLRY~n~~~y~~Ir 152 (173)
.++.-...+|.|||.+++|+||+|++|||+.+||+.-+
T Consensus 6 ~~~~~~~~~C~vC~~~~kY~CPrC~~~yCSl~C~k~Hk 43 (56)
T 2yqq_A 6 SGLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHK 43 (56)
T ss_dssp CCCCCCCCCCTTTCSCCSEECTTTCCEESSHHHHHHHH
T ss_pred cccCCCCCccCcCcCCCeeeCCCCCCCeeCHHHHHHHH
Confidence 35666667999999999999999999999999998754
No 2
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=98.14 E-value=9.7e-07 Score=61.16 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCCCCCCcccccccC----CCccccCCCCCCcccCHHHHHHH
Q psy8340 114 PPSFKPSLKYSDISR----FECNYKDPQTKLYYYNIEEYKLI 151 (173)
Q Consensus 114 PPSlkP~kkyCdITG----lpA~YtDP~TgLRY~n~~~y~~I 151 (173)
.+|-.++...|.||+ .+++|+||+|++|||+..||+.=
T Consensus 4 ~~s~m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 4 GSSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CCSSCCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCCCCCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 455566778999999 69999999999999999999953
No 3
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=71.27 E-value=3.7 Score=26.76 Aligned_cols=33 Identities=6% Similarity=-0.233 Sum_probs=27.2
Q ss_pred CCCCcccccccCCCccccCCCCCC-cccCHHHHH
Q psy8340 117 FKPSLKYSDISRFECNYKDPQTKL-YYYNIEEYK 149 (173)
Q Consensus 117 lkP~kkyCdITGlpA~YtDP~TgL-RY~n~~~y~ 149 (173)
..+....|..||.++..+|..|+. +||+.++-.
T Consensus 11 ~~~~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~ 44 (60)
T 2dj8_A 11 QEDSSESCWNCGRKASETCSGCNTARYCGSFCQH 44 (60)
T ss_dssp CCCCSCCCSSSCSCCCEECTTTSCCEESSHHHHH
T ss_pred CCCCCcccccCCCCCcccCCCCCCEeeeCHHHHH
Confidence 345667999999999999999987 688888754
No 4
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.63 E-value=3.1 Score=28.76 Aligned_cols=32 Identities=13% Similarity=-0.048 Sum_probs=28.5
Q ss_pred CCcccccccCCCccccCCCCCCcccCHHHHHH
Q psy8340 119 PSLKYSDISRFECNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 119 P~kkyCdITGlpA~YtDP~TgLRY~n~~~y~~ 150 (173)
|.-..|.|||-.+-|.|-+|.-+-|+.||=..
T Consensus 17 pgePvCvvCGryGeYICd~Td~DVCSlECK~~ 48 (60)
T 2yqp_A 17 PGEPICVVCGRYGEYICDKTDEDVCSLECKAK 48 (60)
T ss_dssp TTSCCCSSSSSCCSEECSSSCCEESSHHHHHH
T ss_pred CCCceEEEecCccceeecCCCcchhhHHHHHH
Confidence 44556999999999999999999999999765
No 5
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=56.16 E-value=2.4 Score=27.48 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=12.3
Q ss_pred CCCcccccccCCCccccC
Q psy8340 118 KPSLKYSDISRFECNYKD 135 (173)
Q Consensus 118 kP~kkyCdITGlpA~YtD 135 (173)
...|.|||||..++..+.
T Consensus 17 ~~eRpYCd~CEvFGH~t~ 34 (42)
T 2pzo_E 17 GEERPYCEICEMFGHWAT 34 (42)
T ss_dssp ----CEETTTTEESSCGG
T ss_pred ccCCcccccccccCcccc
Confidence 367899999999988763
No 6
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=54.89 E-value=7.4 Score=25.32 Aligned_cols=30 Identities=7% Similarity=-0.233 Sum_probs=25.2
Q ss_pred CcccccccCCCccccCCCCCC-cccCHHHHH
Q psy8340 120 SLKYSDISRFECNYKDPQTKL-YYYNIEEYK 149 (173)
Q Consensus 120 ~kkyCdITGlpA~YtDP~TgL-RY~n~~~y~ 149 (173)
....|..||.++..+|..|+. +||+.++-.
T Consensus 12 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~ 42 (60)
T 2od1_A 12 SSESCWNCGRKASETCSGCNTARYCGSFCQH 42 (60)
T ss_dssp CSSCCTTTSSCCCEECTTTSCCEESSHHHHH
T ss_pred CCCccccCCCcccccCCCCCCeeecCHHHHH
Confidence 456899999999999999985 688888754
No 7
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.54 E-value=3.2 Score=27.00 Aligned_cols=38 Identities=5% Similarity=-0.118 Sum_probs=27.2
Q ss_pred CcccccccCCCCCCCcccccccCC---C----ccccCCCCCCcccC
Q psy8340 106 IHYSSIVAPPSFKPSLKYSDISRF---E----CNYKDPQTKLYYYN 144 (173)
Q Consensus 106 ptY~sI~APPSlkP~kkyCdITGl---p----A~YtDP~TgLRY~n 144 (173)
..|..++ --.+...++||+-||- - .++.|++||.-|.+
T Consensus 5 l~~y~v~-~~kv~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 5 WKLYEIK-DGKVIRKNKFCPRCGPGVFMADHGDRWACGKCGYTEWK 49 (50)
T ss_dssp CCCCEEC-SSCEECSSEECSSSCSSCEEEECSSEEECSSSCCEEEC
T ss_pred eeEEEEE-CCEEEEecccCCCCCCceEEecCCCeEECCCCCCEEEC
Confidence 3566665 2345678899999985 2 38899999987764
No 8
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=54.09 E-value=2.7 Score=24.75 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=12.1
Q ss_pred CcccccccCCCccccC
Q psy8340 120 SLKYSDISRFECNYKD 135 (173)
Q Consensus 120 ~kkyCdITGlpA~YtD 135 (173)
.|.||++|...+..++
T Consensus 2 ~RpYCe~CE~FGH~t~ 17 (26)
T 2hqh_E 2 SRPYCEICEMFGHWAT 17 (26)
T ss_dssp --CEETTTTEESSCGG
T ss_pred CCccchHHHHhCcccc
Confidence 4789999999988764
No 9
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=52.25 E-value=7.5 Score=25.35 Aligned_cols=31 Identities=6% Similarity=-0.233 Sum_probs=25.6
Q ss_pred CCcccccccCCCccccCCCCCC-cccCHHHHH
Q psy8340 119 PSLKYSDISRFECNYKDPQTKL-YYYNIEEYK 149 (173)
Q Consensus 119 P~kkyCdITGlpA~YtDP~TgL-RY~n~~~y~ 149 (173)
|....|..||.++..+|..|+. +||+.++-.
T Consensus 15 ~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~ 46 (64)
T 2odd_A 15 DSSESCWNCGRKASETCSGCNTARYCGSFCQH 46 (64)
T ss_dssp CCSSSCTTTSSCCCEEETTTSCCEESSHHHHH
T ss_pred CCCCcCccccCCCcccCCCCCChhhCCHHHHH
Confidence 3567999999999999999976 588887754
No 10
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=51.16 E-value=12 Score=26.83 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=9.7
Q ss_pred CCccccCCCCCCc
Q psy8340 129 FECNYKDPQTKLY 141 (173)
Q Consensus 129 lpA~YtDP~TgLR 141 (173)
||..|+||.||..
T Consensus 57 lPddW~CPvCga~ 69 (81)
T 2kn9_A 57 IPDDWSCPDCGAA 69 (81)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 5667788888873
No 11
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=47.91 E-value=23 Score=23.90 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=27.2
Q ss_pred CCCCcccccccCCCccccCCCCCC-cccCHHHHH
Q psy8340 117 FKPSLKYSDISRFECNYKDPQTKL-YYYNIEEYK 149 (173)
Q Consensus 117 lkP~kkyCdITGlpA~YtDP~TgL-RY~n~~~y~ 149 (173)
+.+....|..||-++.-+|-+|+. +||+.+|-.
T Consensus 11 ~~~~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~ 44 (70)
T 2d8q_A 11 VAPERPRCAYCSAEASKRCSRCQNEWYCCRECQV 44 (70)
T ss_dssp CCCCCCBCSSSCCBCCCBCTTTSCCBCSCHHHHH
T ss_pred ccCCCCcCCCCCCcccccCCCCCCEeeCCHHHhH
Confidence 356677999999999999999985 588888754
No 12
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=47.78 E-value=9.8 Score=26.58 Aligned_cols=32 Identities=0% Similarity=-0.197 Sum_probs=25.8
Q ss_pred CCcccccccCCCccccCCCCCCcccCHHHHHH
Q psy8340 119 PSLKYSDISRFECNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 119 P~kkyCdITGlpA~YtDP~TgLRY~n~~~y~~ 150 (173)
++.+-|.+||.|..|..-.---+||+.+|-.+
T Consensus 7 ~~~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 7 TITVNCPTCGKTVVWGEISPFRPFCSKRCQLI 38 (68)
T ss_dssp CCEEECTTTCCEEECSSSSSCCSSSSHHHHHH
T ss_pred CCcCcCCCCCCcccccccCCCCcccCHHHHhh
Confidence 35668999999999876666779999998654
No 13
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.76 E-value=10 Score=25.13 Aligned_cols=13 Identities=8% Similarity=0.025 Sum_probs=10.5
Q ss_pred CCccccCCCCCCc
Q psy8340 129 FECNYKDPQTKLY 141 (173)
Q Consensus 129 lpA~YtDP~TgLR 141 (173)
||..|+||.||..
T Consensus 33 lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 33 IPDDWVCPLCGVG 45 (54)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4778899999875
No 14
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=41.97 E-value=9.8 Score=30.50 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=17.6
Q ss_pred CcccccccCCC----ccccCCCCCCc
Q psy8340 120 SLKYSDISRFE----CNYKDPQTKLY 141 (173)
Q Consensus 120 ~kkyCdITGlp----A~YtDP~TgLR 141 (173)
.+-.|.+||+. ++..||.||..
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCC
Confidence 45579999985 57899999975
No 15
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=40.75 E-value=15 Score=22.73 Aligned_cols=30 Identities=7% Similarity=-0.215 Sum_probs=23.9
Q ss_pred cccccccCCCccccCCCCCC-cccCHHHHHH
Q psy8340 121 LKYSDISRFECNYKDPQTKL-YYYNIEEYKL 150 (173)
Q Consensus 121 kkyCdITGlpA~YtDP~TgL-RY~n~~~y~~ 150 (173)
...|..||.++..+|..++. .||+.++-..
T Consensus 9 ~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~ 39 (52)
T 2jw6_A 9 EQSCVNCGREAMSECTGCHKVNYCSTFCQRK 39 (52)
T ss_dssp --CCSSSSSSCSEECTTTCSSEESSHHHHHH
T ss_pred CCcCCCCCCCCcCcCCCCCCEeecCHHHHHH
Confidence 45899999999999999986 5888887653
No 16
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=40.04 E-value=6.4 Score=25.45 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=13.3
Q ss_pred CCcccccccCCCccccC
Q psy8340 119 PSLKYSDISRFECNYKD 135 (173)
Q Consensus 119 P~kkyCdITGlpA~YtD 135 (173)
..|+||++|-.++..++
T Consensus 18 ~eRpYCe~CEVFGH~t~ 34 (42)
T 3e2u_E 18 EERPYCEICEMFGHWAT 34 (42)
T ss_dssp --CCEETTTTEESSCGG
T ss_pred ccCcccccceecccccc
Confidence 45899999999988774
No 17
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=39.28 E-value=15 Score=24.25 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=10.2
Q ss_pred CCccccCCCCCCc
Q psy8340 129 FECNYKDPQTKLY 141 (173)
Q Consensus 129 lpA~YtDP~TgLR 141 (173)
||..|+||.||..
T Consensus 33 lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 33 IPADWVCPDCGVG 45 (55)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 6778888888874
No 18
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=38.12 E-value=23 Score=16.99 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=14.6
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.||-.|.....+..
T Consensus 1 ~~~C~~C~k~f~~~~~l~~ 19 (27)
T 1znf_A 1 XYKCGLCERSFVEKSALSR 19 (27)
T ss_dssp -CBCSSSCCBCSSHHHHHH
T ss_pred CccCCCCCCcCCCHHHHHH
Confidence 4889999999988776654
No 19
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=37.82 E-value=16 Score=25.16 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=14.1
Q ss_pred CCccccCCCCCCcccCHHHHHHHh
Q psy8340 129 FECNYKDPQTKLYYYNIEEYKLIR 152 (173)
Q Consensus 129 lpA~YtDP~TgLRY~n~~~y~~Ir 152 (173)
||..|+||.||.. .+.|..|.
T Consensus 37 lPddw~CP~Cga~---K~~F~~~~ 57 (70)
T 1dx8_A 37 LSDSFMCPACRSP---KNQFKSIK 57 (70)
T ss_dssp SCTTCBCTTTCCB---GGGEEECC
T ss_pred CCCCCcCCCCCCC---HHHceEcc
Confidence 6777888888874 45555443
No 20
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=36.00 E-value=22 Score=17.20 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=14.9
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.||-.|.....+..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKT 20 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHH
T ss_pred CccCCCCCCccCCHHHHHH
Confidence 5889999999988766553
No 21
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=35.46 E-value=28 Score=18.20 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=16.1
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 10 k~~~C~~C~k~f~~~~~l~~ 29 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHLAL 29 (37)
T ss_dssp SSBCCTTTCCCBSSHHHHHH
T ss_pred CCccCCCCCcccCcHHHHHH
Confidence 46999999999998776654
No 22
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.68 E-value=23 Score=16.98 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=13.8
Q ss_pred cccCCCCCCcccCHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYK 149 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~ 149 (173)
+|.|+.||-.|.....+.
T Consensus 2 ~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCSSCCCCCCTTTHHH
T ss_pred CCcCCCCCcccCCHHHHH
Confidence 588888988888766554
No 23
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.11 E-value=32 Score=16.59 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=15.1
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.||-.|.....+..
T Consensus 2 ~~~C~~C~~~f~~~~~l~~ 20 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHLKR 20 (29)
T ss_dssp CCBCTTTCCBCSSHHHHHH
T ss_pred CeECCCCCcccCCHHHHHH
Confidence 5889999999988776654
No 24
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.88 E-value=21 Score=17.40 Aligned_cols=19 Identities=0% Similarity=-0.122 Sum_probs=14.9
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.||-.|.....+..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~ 21 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTK 21 (27)
T ss_dssp CEECSSSSCEESSHHHHHH
T ss_pred CccCCCcChhhCCHHHHHH
Confidence 5889999999988776543
No 25
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.68 E-value=26 Score=22.79 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=8.8
Q ss_pred CCccccCCCCCCc
Q psy8340 129 FECNYKDPQTKLY 141 (173)
Q Consensus 129 lpA~YtDP~TgLR 141 (173)
||..|+||.||..
T Consensus 33 lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 33 LPDDWACPVCGAS 45 (52)
T ss_dssp SCTTCCCSSSCCC
T ss_pred CCCCCcCCCCCCc
Confidence 4666777777763
No 26
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=31.62 E-value=19 Score=17.60 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=14.8
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.||-.|.....+..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTL 20 (29)
T ss_dssp CEECSSSSCEESCSHHHHH
T ss_pred CccCCCCCchhCCHHHHHH
Confidence 5888999999988776654
No 27
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=31.17 E-value=31 Score=16.90 Aligned_cols=19 Identities=5% Similarity=-0.115 Sum_probs=14.9
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.||-.|.....+..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLIR 20 (30)
T ss_dssp CSBCTTTCCBCSSSHHHHH
T ss_pred CcCCcccCcccCChHHHHH
Confidence 5889999999988776654
No 28
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=30.14 E-value=23 Score=25.66 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=9.6
Q ss_pred CCccccCCCCCCc
Q psy8340 129 FECNYKDPQTKLY 141 (173)
Q Consensus 129 lpA~YtDP~TgLR 141 (173)
||..|+||.||..
T Consensus 65 lPddW~CPvCga~ 77 (87)
T 1s24_A 65 IPDDWCCPDCGAT 77 (87)
T ss_dssp CCTTCCCSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 5667788888863
No 29
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=29.59 E-value=15 Score=36.33 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=23.4
Q ss_pred ccccccCCCcccc-------CCCCC---------CcccCHHHHHHHhcCC
Q psy8340 122 KYSDISRFECNYK-------DPQTK---------LYYYNIEEYKLIRKLP 155 (173)
Q Consensus 122 kyCdITGlpA~Yt-------DP~Tg---------LRY~n~~~y~~Ir~lp 155 (173)
+.||+||..+-|. |+.|| ++|+-.--++.++.|.
T Consensus 1062 ~vc~~cG~~~~~~~~~~~~~c~~~~~~~~i~~~~iP~sfk~L~~EL~sm~ 1111 (1131)
T 4ayb_B 1062 YVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMI 1111 (1131)
T ss_dssp EECSSSCCBCEEETTTTEEECSSCSSSSCCEEEEEEHHHHHHHHHHHTTT
T ss_pred eeccCCCceEEEeccCCceeCCccCCCCCccccCCCHHHHHHHHHHHHCC
Confidence 5799999988765 88887 5666555555555553
No 30
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.31 E-value=23 Score=27.64 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=16.7
Q ss_pred CCcccccccCCC----ccccCCCCCCc
Q psy8340 119 PSLKYSDISRFE----CNYKDPQTKLY 141 (173)
Q Consensus 119 P~kkyCdITGlp----A~YtDP~TgLR 141 (173)
+..-.|.+||+. ++-.||.||.+
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 344459999984 56689999864
No 31
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.65 E-value=29 Score=16.84 Aligned_cols=19 Identities=5% Similarity=-0.048 Sum_probs=14.8
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.|+-.|.....+..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~ 21 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMET 21 (28)
T ss_dssp SEECSSSCCEESCHHHHHH
T ss_pred CccCCCCCcccCCHHHHHH
Confidence 5888999999988766553
No 32
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=28.31 E-value=27 Score=30.43 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=25.0
Q ss_pred CcccccccCC--CccccCCCCCC-cccCHHHHH
Q psy8340 120 SLKYSDISRF--ECNYKDPQTKL-YYYNIEEYK 149 (173)
Q Consensus 120 ~kkyCdITGl--pA~YtDP~TgL-RY~n~~~y~ 149 (173)
....|+.|+- ++...|+.|+. +||+.+|..
T Consensus 48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~ 80 (433)
T 3qww_A 48 RGHHCECCFARKEGLSKCGRCKQAFYCDVECQK 80 (433)
T ss_dssp TTTBCTTTCCBCSSCEECTTTSCCEESSHHHHH
T ss_pred cCCcCCcccccCCCCCCCCCCcceeecChhhhh
Confidence 4568999995 58899999998 999988863
No 33
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=28.12 E-value=30 Score=20.19 Aligned_cols=21 Identities=5% Similarity=0.260 Sum_probs=16.0
Q ss_pred CccccCCCCCCcccCHHHHHH
Q psy8340 130 ECNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 130 pA~YtDP~TgLRY~n~~~y~~ 150 (173)
+++|+||.|+..--|.+-|+.
T Consensus 1 ~~k~~CpvCk~q~Pd~kt~~~ 21 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDTLQI 21 (28)
T ss_dssp CCCEECTTSSCEESSHHHHHH
T ss_pred CCcccCccccccCcChHHHHH
Confidence 577888888888777776654
No 34
>3lq9_A DNA-damage-inducible transcript 4 protein; REDD1 DDIT4 MTOR, hypoxia, cancer, signaling protein; 2.00A {Homo sapiens}
Probab=26.66 E-value=24 Score=27.62 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=20.3
Q ss_pred cCCCcceeeeceeecC--CceeEEeccc
Q psy8340 17 KDPTNLLAIQKFFSKG--EGIEITMSQS 42 (173)
Q Consensus 17 ~~~~~~~~i~~~~~~g--~~~~~~ms~~ 42 (173)
-|.++|-.|+..|+.| .+..|++|+.
T Consensus 94 ~d~~~W~~l~~~f~~~~~~~~tl~lSp~ 121 (134)
T 3lq9_A 94 LDSRLWPKIQGLFSSANSPSQSLTLSTG 121 (134)
T ss_dssp CCTTCC-CCCCSCCTTSCCCCCEECCSC
T ss_pred eCCCCCHhHHHHHhcCCCCCceEEECCC
Confidence 3788999999999988 5677777765
No 35
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.35 E-value=48 Score=17.27 Aligned_cols=19 Identities=5% Similarity=0.196 Sum_probs=15.1
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.||-.|.....+..
T Consensus 2 p~~C~~C~k~F~~~~~L~~ 20 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSK 20 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHH
T ss_pred cccCCCCCchhCCHHHHHH
Confidence 5889999999988776653
No 36
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.17 E-value=50 Score=16.97 Aligned_cols=20 Identities=5% Similarity=-0.252 Sum_probs=15.1
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKS 27 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHH
Confidence 35888889989888776643
No 37
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=25.43 E-value=15 Score=25.06 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=14.5
Q ss_pred CCCCCCcccccccCC-Ccc
Q psy8340 115 PSFKPSLKYSDISRF-ECN 132 (173)
Q Consensus 115 PSlkP~kkyCdITGl-pA~ 132 (173)
.|+..+++.|.-||+ ||.
T Consensus 26 ~syH~qK~~Ca~CGygpa~ 44 (57)
T 1vq8_1 26 KSYHTKKKVCSSCGFGKSA 44 (57)
T ss_dssp EEEETTTTEETTTCTTTCS
T ss_pred hhhhccccccccccCCchh
Confidence 345678999999999 884
No 38
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.30 E-value=37 Score=16.25 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=14.8
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.|+-.|.....+..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKR 20 (29)
T ss_dssp CEECTTTSCEESCHHHHHH
T ss_pred CccCCCCCCccCChhHHHH
Confidence 5888999988888776653
No 39
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.23 E-value=23 Score=17.51 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=14.1
Q ss_pred cccCCCCCCcccCHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYK 149 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~ 149 (173)
+|.|+.||-.|.....+.
T Consensus 3 ~~~C~~C~k~f~~~~~l~ 20 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASMQ 20 (27)
T ss_dssp TEEETTTTEEESCHHHHH
T ss_pred CcCCCCCCcccCCHHHHH
Confidence 588888998888876654
No 40
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=25.16 E-value=34 Score=29.53 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=24.3
Q ss_pred cccccccCC--CccccCCCCCC-cccCHHHHH
Q psy8340 121 LKYSDISRF--ECNYKDPQTKL-YYYNIEEYK 149 (173)
Q Consensus 121 kkyCdITGl--pA~YtDP~TgL-RY~n~~~y~ 149 (173)
...|+.|+- ++...|+.|+. +||+.+|..
T Consensus 47 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~ 78 (429)
T 3qwp_A 47 GVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQK 78 (429)
T ss_dssp TTBCTTTCCBCSSCEECTTTSCCEESSHHHHH
T ss_pred CCcCcCCCCcCCCCCcCCCCCCcccCChhhhh
Confidence 457999984 67899999998 999998864
No 41
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.92 E-value=39 Score=16.22 Aligned_cols=19 Identities=5% Similarity=-0.097 Sum_probs=15.1
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.||-.|.....+..
T Consensus 3 ~~~C~~C~~~f~~~~~l~~ 21 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMR 21 (30)
T ss_dssp CEECTTTCCEESCHHHHHH
T ss_pred CccCCCCCcccCCHHHHHH
Confidence 5888999999988776654
No 42
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.45 E-value=16 Score=17.75 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=12.4
Q ss_pred cccCCCCCCcccCHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYK 149 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~ 149 (173)
+|.|+.||-.|.....+.
T Consensus 2 p~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLA 19 (26)
Confidence 477888888777665443
No 43
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.46 E-value=20 Score=24.80 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=14.3
Q ss_pred CCCCCCcccccccCC-Ccc
Q psy8340 115 PSFKPSLKYSDISRF-ECN 132 (173)
Q Consensus 115 PSlkP~kkyCdITGl-pA~ 132 (173)
-|+..+++.|.-||| ||.
T Consensus 26 ~syH~qK~~Ca~CGygps~ 44 (62)
T 3j21_e 26 VSYNVKKGYCAACGFGRSR 44 (62)
T ss_dssp BCEETTTTEETTTCTTTCS
T ss_pred chhccccccccccCCchhh
Confidence 455678999999999 653
No 44
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.20 E-value=53 Score=21.72 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=16.0
Q ss_pred ccccCCCCCCcccCHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYK 149 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~ 149 (173)
.+|.||+|+..|.-.+..+
T Consensus 11 ~~~~CPrCn~~f~~~~sLr 29 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEALR 29 (49)
T ss_dssp SCCCCTTTCCCCSSHHHHH
T ss_pred CceeCCcccccccchHHHH
Confidence 7899999999998776554
No 45
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.75 E-value=38 Score=17.26 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=15.5
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 6 k~~~C~~C~k~f~~~~~L~~ 25 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLRS 25 (35)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCcchhCCHHHHHH
Confidence 35889999999988776653
No 46
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=23.39 E-value=36 Score=20.78 Aligned_cols=15 Identities=0% Similarity=-0.137 Sum_probs=9.4
Q ss_pred CccccCCCCCCcccC
Q psy8340 130 ECNYKDPQTKLYYYN 144 (173)
Q Consensus 130 pA~YtDP~TgLRY~n 144 (173)
.-+|.|+.||-.|..
T Consensus 37 ~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 37 TGTFRCTFCHTEVEE 51 (62)
T ss_dssp TTEEBCSSSCCBCEE
T ss_pred CCCEECCCCCCcccc
Confidence 356777777766643
No 47
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.71 E-value=43 Score=17.41 Aligned_cols=19 Identities=0% Similarity=-0.123 Sum_probs=14.9
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.|+-.|.....+..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2els_A 9 IFTCEYCNKVFKFKHSLQA 27 (36)
T ss_dssp CEECTTTCCEESSHHHHHH
T ss_pred CEECCCCCceeCCHHHHHH
Confidence 5889999999888776653
No 48
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.67 E-value=41 Score=17.28 Aligned_cols=20 Identities=0% Similarity=-0.217 Sum_probs=15.8
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 6 k~~~C~~C~k~f~~~~~l~~ 25 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCAR 25 (35)
T ss_dssp SCEECSSSCCEESSHHHHHH
T ss_pred cCeeCCCCCcccCCHHHHHH
Confidence 36889999999988776654
No 49
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=22.64 E-value=34 Score=25.85 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=18.6
Q ss_pred CCCcccccccCCC----------------c----------cccCCCCCCc
Q psy8340 118 KPSLKYSDISRFE----------------C----------NYKDPQTKLY 141 (173)
Q Consensus 118 kP~kkyCdITGlp----------------A----------~YtDP~TgLR 141 (173)
.|.+-.|--||.. . .+.||.||-+
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 3677888888876 4 6889999876
No 50
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.33 E-value=41 Score=17.33 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=14.8
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.|+-.|.....+..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elt_A 9 PYKCPQCSYASAIKANLNV 27 (36)
T ss_dssp SEECSSSSCEESSHHHHHH
T ss_pred CCCCCCCCcccCCHHHHHH
Confidence 5888889988888776553
No 51
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=21.63 E-value=17 Score=26.97 Aligned_cols=17 Identities=0% Similarity=0.002 Sum_probs=13.8
Q ss_pred CCCCCcccccccCCCcc
Q psy8340 116 SFKPSLKYSDISRFECN 132 (173)
Q Consensus 116 SlkP~kkyCdITGlpA~ 132 (173)
|+..+++.|.-||+|+.
T Consensus 26 syH~qK~~Ca~CGyps~ 42 (94)
T 4a18_A 26 TYHKQKLRCAACGYPDA 42 (94)
T ss_dssp EEETTTTEESSSCGGGS
T ss_pred hhhhccccccccCCcHH
Confidence 45578999999999863
No 52
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.38 E-value=67 Score=17.12 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=16.0
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 9 k~~~C~~C~k~f~~~~~L~~ 28 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRLVQ 28 (42)
T ss_dssp CSCBCTTTCCBCSSHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 36889999999998877654
No 53
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.23 E-value=45 Score=17.29 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=15.2
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.|+-.|.....+..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elq_A 9 PFKCSLCEYATRSKSNLKA 27 (36)
T ss_dssp SEECSSSSCEESCHHHHHH
T ss_pred CccCCCCCchhCCHHHHHH
Confidence 5889999999988776653
No 54
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.09 E-value=35 Score=17.83 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=15.3
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.||-.|.....+..
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRLIKS 27 (37)
T ss_dssp CCCEETTTTEECSSHHHHHH
T ss_pred CCcCCCCCCCccCCHHHHHH
Confidence 35888889999988776653
No 55
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=20.97 E-value=22 Score=33.21 Aligned_cols=30 Identities=3% Similarity=-0.079 Sum_probs=8.5
Q ss_pred CcccccccCCCCCCCcccccccCCCcc-------ccCCCCCCc
Q psy8340 106 IHYSSIVAPPSFKPSLKYSDISRFECN-------YKDPQTKLY 141 (173)
Q Consensus 106 ptY~sI~APPSlkP~kkyCdITGlpA~-------YtDP~TgLR 141 (173)
.-|+++.- +-.+|..||+.+. +.||.||-+
T Consensus 531 i~Y~~~n~------~~~~C~~CGy~~~~~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 531 LDYFGVNM------PVDKCFTCGSTHEMTPTENGFVCSICGET 567 (605)
T ss_dssp CSEEEEEC------CEEET------------------------
T ss_pred CCeEEeCC------CCccCcccCCcCccCccccCCcCCCCCCC
Confidence 44777764 4559999998872 789999964
No 56
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=68 Score=17.10 Aligned_cols=20 Identities=10% Similarity=0.012 Sum_probs=15.9
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.||-.|.....+..
T Consensus 10 k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGSLIV 29 (42)
T ss_dssp CSBCCTTTTCCBSSHHHHHT
T ss_pred CCeeCCCccchhCCHHHHHH
Confidence 46899999999998776653
No 57
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.32 E-value=68 Score=17.78 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=16.1
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eon_A 11 KPYKCQVCGKAFRVSSHLVQ 30 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHH
T ss_pred cccCCCCCCcccCcHHHHHH
Confidence 46899999999998877654
No 58
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.29 E-value=69 Score=17.59 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=16.5
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2yti_A 11 KPYKCNECGKVFTQNSHLAR 30 (46)
T ss_dssp CTTCCSSSCCCCSSHHHHHH
T ss_pred cCeECCCCCcccCChhHHHH
Confidence 46899999999998887765
No 59
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.26 E-value=41 Score=17.90 Aligned_cols=20 Identities=15% Similarity=-0.094 Sum_probs=15.5
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 8 k~~~C~~C~k~f~~~~~L~~ 27 (37)
T 2elm_A 8 HLYYCSQCHYSSITKNCLKR 27 (37)
T ss_dssp CEEECSSSSCEEECHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHH
Confidence 36889999999988776653
No 60
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.25 E-value=49 Score=17.15 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=14.7
Q ss_pred cccCCCCCCcccCHHHHHH
Q psy8340 132 NYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 132 ~YtDP~TgLRY~n~~~y~~ 150 (173)
+|.|+.|+-.|.....+..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elv_A 9 LYDCHICERKFKNELDRDR 27 (36)
T ss_dssp CEECSSSCCEESSHHHHHH
T ss_pred CeECCCCCCccCCHHHHHH
Confidence 5888888888888776654
No 61
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.19 E-value=73 Score=17.12 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=16.2
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 10 k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQTLKS 29 (42)
T ss_dssp CCBCCSSSCCCBSSHHHHHH
T ss_pred CCEECCCCCCccCCHHHHHH
Confidence 46899999999998877654
No 62
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.06 E-value=70 Score=17.58 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=16.5
Q ss_pred ccccCCCCCCcccCHHHHHH
Q psy8340 131 CNYKDPQTKLYYYNIEEYKL 150 (173)
Q Consensus 131 A~YtDP~TgLRY~n~~~y~~ 150 (173)
-+|.|+.|+-.|.....+..
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2enf_A 11 KPYKCNECGKVFTQNSHLVR 30 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHH
Confidence 46899999999998887765
Done!